Multiple sequence alignment - TraesCS5B01G129300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G129300 chr5B 100.000 3058 0 0 1 3058 239161673 239158616 0.000000e+00 5648.0
1 TraesCS5B01G129300 chr5B 95.788 1282 18 23 922 2201 242544423 242545670 0.000000e+00 2036.0
2 TraesCS5B01G129300 chr5B 96.242 479 16 2 2575 3052 242545736 242546213 0.000000e+00 784.0
3 TraesCS5B01G129300 chr5B 96.774 31 1 0 1979 2009 185223236 185223266 6.000000e-03 52.8
4 TraesCS5B01G129300 chr5A 97.975 1037 14 2 922 1954 293865478 293866511 0.000000e+00 1792.0
5 TraesCS5B01G129300 chr5A 92.094 468 30 5 2596 3058 293866580 293867045 0.000000e+00 652.0
6 TraesCS5B01G129300 chr5A 94.393 214 11 1 2213 2426 11380085 11380297 8.180000e-86 327.0
7 TraesCS5B01G129300 chr5A 88.991 218 23 1 2213 2429 708376103 708376320 5.030000e-68 268.0
8 TraesCS5B01G129300 chr5A 92.308 65 5 0 2533 2597 10916042 10916106 3.250000e-15 93.5
9 TraesCS5B01G129300 chr5D 96.515 1033 21 3 922 1954 220098193 220099210 0.000000e+00 1694.0
10 TraesCS5B01G129300 chr5D 90.672 461 40 1 2596 3053 220099278 220099738 7.250000e-171 610.0
11 TraesCS5B01G129300 chrUn 95.717 607 16 4 1 603 280520691 280521291 0.000000e+00 968.0
12 TraesCS5B01G129300 chrUn 95.717 607 16 4 1 603 287846155 287845555 0.000000e+00 968.0
13 TraesCS5B01G129300 chrUn 95.717 607 16 4 1 603 294730520 294729920 0.000000e+00 968.0
14 TraesCS5B01G129300 chrUn 95.717 607 16 4 1 603 295167587 295166987 0.000000e+00 968.0
15 TraesCS5B01G129300 chrUn 93.717 191 11 1 2011 2201 277980313 277980124 4.990000e-73 285.0
16 TraesCS5B01G129300 chrUn 90.323 155 15 0 772 926 280521310 280521464 1.440000e-48 204.0
17 TraesCS5B01G129300 chrUn 90.323 155 15 0 772 926 287845536 287845382 1.440000e-48 204.0
18 TraesCS5B01G129300 chrUn 90.323 155 15 0 772 926 294729901 294729747 1.440000e-48 204.0
19 TraesCS5B01G129300 chrUn 90.323 155 15 0 772 926 295166968 295166814 1.440000e-48 204.0
20 TraesCS5B01G129300 chr3B 92.505 467 16 7 391 845 225180330 225180789 0.000000e+00 651.0
21 TraesCS5B01G129300 chr3B 97.231 325 6 3 1 322 225179640 225179964 5.760000e-152 547.0
22 TraesCS5B01G129300 chr3B 96.721 183 6 0 2213 2395 794300929 794300747 3.830000e-79 305.0
23 TraesCS5B01G129300 chr3B 92.453 212 6 4 320 527 225180125 225180330 8.290000e-76 294.0
24 TraesCS5B01G129300 chr3B 79.032 310 41 15 463 763 758444050 758443756 1.120000e-44 191.0
25 TraesCS5B01G129300 chr3B 90.476 126 12 0 463 588 14090546 14090671 1.890000e-37 167.0
26 TraesCS5B01G129300 chr2A 85.897 624 47 19 1 595 64627033 64627644 7.200000e-176 627.0
27 TraesCS5B01G129300 chr2A 85.737 624 48 17 1 595 15915702 15916313 3.350000e-174 621.0
28 TraesCS5B01G129300 chr2A 86.598 97 13 0 2009 2105 28817957 28818053 1.160000e-19 108.0
29 TraesCS5B01G129300 chr2A 91.429 70 6 0 2534 2603 700027720 700027651 2.510000e-16 97.1
30 TraesCS5B01G129300 chr1A 91.648 455 31 4 1 449 242689690 242690143 9.310000e-175 623.0
31 TraesCS5B01G129300 chr1A 94.037 218 13 0 2213 2430 18304880 18304663 6.320000e-87 331.0
32 TraesCS5B01G129300 chr1A 94.203 69 4 0 2529 2597 340015070 340015002 4.170000e-19 106.0
33 TraesCS5B01G129300 chr7D 84.735 452 52 11 474 924 634643970 634644405 1.300000e-118 436.0
34 TraesCS5B01G129300 chr7D 79.191 173 32 4 754 924 403271974 403272144 1.930000e-22 117.0
35 TraesCS5B01G129300 chr7D 82.787 122 19 2 2011 2131 449415781 449415661 1.160000e-19 108.0
36 TraesCS5B01G129300 chr7D 90.476 42 1 2 1969 2009 86685215 86685254 6.000000e-03 52.8
37 TraesCS5B01G129300 chr6D 82.012 517 43 20 286 771 461324631 461324134 7.950000e-106 394.0
38 TraesCS5B01G129300 chr6D 77.344 128 28 1 2004 2131 331236783 331236909 1.180000e-09 75.0
39 TraesCS5B01G129300 chr6B 81.431 517 42 21 286 771 702805621 702805128 1.040000e-99 374.0
40 TraesCS5B01G129300 chr6B 94.262 244 13 1 1 243 702805863 702805620 3.720000e-99 372.0
41 TraesCS5B01G129300 chr4B 95.814 215 9 0 2213 2427 572564930 572564716 6.280000e-92 348.0
42 TraesCS5B01G129300 chr1B 95.833 216 8 1 2213 2428 173126885 173126671 6.280000e-92 348.0
43 TraesCS5B01G129300 chr1B 88.889 216 23 1 2213 2427 544755302 544755087 6.500000e-67 265.0
44 TraesCS5B01G129300 chr1B 94.118 68 3 1 2535 2601 396594817 396594750 5.390000e-18 102.0
45 TraesCS5B01G129300 chr1B 82.301 113 18 2 813 924 425429 425318 2.510000e-16 97.1
46 TraesCS5B01G129300 chr1B 82.301 113 18 2 813 924 432238 432127 2.510000e-16 97.1
47 TraesCS5B01G129300 chr3D 94.470 217 12 0 2213 2429 124504073 124503857 4.890000e-88 335.0
48 TraesCS5B01G129300 chr3D 89.302 215 21 2 2213 2426 39424248 39424035 5.030000e-68 268.0
49 TraesCS5B01G129300 chr3D 76.685 356 54 18 463 807 184660968 184660631 1.460000e-38 171.0
50 TraesCS5B01G129300 chr7A 78.736 174 33 4 753 924 622376250 622376421 2.490000e-21 113.0
51 TraesCS5B01G129300 chr7A 92.105 76 2 2 2533 2606 490992990 490992917 1.500000e-18 104.0
52 TraesCS5B01G129300 chr1D 82.787 122 19 2 2011 2131 420572219 420572099 1.160000e-19 108.0
53 TraesCS5B01G129300 chr1D 92.647 68 4 1 2535 2601 295184656 295184589 2.510000e-16 97.1
54 TraesCS5B01G129300 chr3A 92.537 67 4 1 2533 2598 424454708 424454774 9.030000e-16 95.3
55 TraesCS5B01G129300 chr2B 91.176 68 6 0 2533 2600 601206911 601206844 3.250000e-15 93.5
56 TraesCS5B01G129300 chr2B 89.041 73 6 2 2533 2605 768661093 768661023 4.200000e-14 89.8
57 TraesCS5B01G129300 chr6A 100.000 30 0 0 1982 2011 505243292 505243321 4.260000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G129300 chr5B 239158616 239161673 3057 True 5648.000000 5648 100.0000 1 3058 1 chr5B.!!$R1 3057
1 TraesCS5B01G129300 chr5B 242544423 242546213 1790 False 1410.000000 2036 96.0150 922 3052 2 chr5B.!!$F2 2130
2 TraesCS5B01G129300 chr5A 293865478 293867045 1567 False 1222.000000 1792 95.0345 922 3058 2 chr5A.!!$F4 2136
3 TraesCS5B01G129300 chr5D 220098193 220099738 1545 False 1152.000000 1694 93.5935 922 3053 2 chr5D.!!$F1 2131
4 TraesCS5B01G129300 chrUn 280520691 280521464 773 False 586.000000 968 93.0200 1 926 2 chrUn.!!$F1 925
5 TraesCS5B01G129300 chrUn 287845382 287846155 773 True 586.000000 968 93.0200 1 926 2 chrUn.!!$R2 925
6 TraesCS5B01G129300 chrUn 294729747 294730520 773 True 586.000000 968 93.0200 1 926 2 chrUn.!!$R3 925
7 TraesCS5B01G129300 chrUn 295166814 295167587 773 True 586.000000 968 93.0200 1 926 2 chrUn.!!$R4 925
8 TraesCS5B01G129300 chr3B 225179640 225180789 1149 False 497.333333 651 94.0630 1 845 3 chr3B.!!$F2 844
9 TraesCS5B01G129300 chr2A 64627033 64627644 611 False 627.000000 627 85.8970 1 595 1 chr2A.!!$F3 594
10 TraesCS5B01G129300 chr2A 15915702 15916313 611 False 621.000000 621 85.7370 1 595 1 chr2A.!!$F1 594
11 TraesCS5B01G129300 chr6B 702805128 702805863 735 True 373.000000 374 87.8465 1 771 2 chr6B.!!$R1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 1187 0.172352 CAGCGTCTTGAGGAGGAGTC 59.828 60.0 0.0 0.0 32.1 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2341 2879 0.034089 GTTCTGCAGGGTGGCCTAAT 60.034 55.0 15.13 0.0 0.0 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 194 1.173444 ACACGCAATTAAACGGGGCA 61.173 50.000 3.65 0.00 36.89 5.36
274 277 4.772624 ACAACCTAGCTAGAATCTGTGTGA 59.227 41.667 22.70 0.00 0.00 3.58
311 316 5.179929 CACAATCGCATGGCAGAGATTATAA 59.820 40.000 12.39 0.00 36.15 0.98
347 515 6.417258 TCACAGCAGAAATGAATCATTCCTA 58.583 36.000 9.11 0.00 32.43 2.94
374 542 8.621286 TCAAAGTCTCAGTTTACCAAAAAGATC 58.379 33.333 0.00 0.00 0.00 2.75
449 755 3.662247 ACAGACCGAACCAGACTAAAG 57.338 47.619 0.00 0.00 0.00 1.85
450 756 2.963782 ACAGACCGAACCAGACTAAAGT 59.036 45.455 0.00 0.00 0.00 2.66
453 759 3.640029 AGACCGAACCAGACTAAAGTGAA 59.360 43.478 0.00 0.00 0.00 3.18
454 760 3.725490 ACCGAACCAGACTAAAGTGAAC 58.275 45.455 0.00 0.00 0.00 3.18
455 761 3.387050 ACCGAACCAGACTAAAGTGAACT 59.613 43.478 0.00 0.00 0.00 3.01
456 762 4.141779 ACCGAACCAGACTAAAGTGAACTT 60.142 41.667 0.00 0.00 37.91 2.66
460 766 4.451900 ACCAGACTAAAGTGAACTTGGTG 58.548 43.478 0.00 0.00 36.12 4.17
461 767 4.163458 ACCAGACTAAAGTGAACTTGGTGA 59.837 41.667 0.00 0.00 36.12 4.02
472 802 1.003355 CTTGGTGATGGTGACGGCT 60.003 57.895 0.00 0.00 0.00 5.52
478 808 1.336755 GTGATGGTGACGGCTTTGTTT 59.663 47.619 0.00 0.00 0.00 2.83
617 1119 4.387343 AGGACTTACCGCCGGGGA 62.387 66.667 21.95 0.00 44.74 4.81
618 1120 3.846430 GGACTTACCGCCGGGGAG 61.846 72.222 21.95 12.18 39.97 4.30
619 1121 2.757099 GACTTACCGCCGGGGAGA 60.757 66.667 21.95 3.91 39.97 3.71
620 1122 3.073101 ACTTACCGCCGGGGAGAC 61.073 66.667 21.95 0.00 39.97 3.36
621 1123 4.203076 CTTACCGCCGGGGAGACG 62.203 72.222 21.95 5.66 39.97 4.18
628 1130 2.044650 CCGGGGAGACGTCCAGTA 60.045 66.667 13.01 0.00 46.07 2.74
629 1131 1.455217 CCGGGGAGACGTCCAGTAT 60.455 63.158 13.01 0.00 46.07 2.12
630 1132 1.734137 CGGGGAGACGTCCAGTATG 59.266 63.158 13.01 0.00 46.07 2.39
631 1133 1.442148 GGGGAGACGTCCAGTATGC 59.558 63.158 13.01 0.00 46.07 3.14
632 1134 1.442148 GGGAGACGTCCAGTATGCC 59.558 63.158 13.01 4.03 45.00 4.40
633 1135 1.065928 GGAGACGTCCAGTATGCCG 59.934 63.158 13.01 0.00 43.31 5.69
634 1136 1.065928 GAGACGTCCAGTATGCCGG 59.934 63.158 13.01 0.00 33.98 6.13
635 1137 1.379443 AGACGTCCAGTATGCCGGA 60.379 57.895 13.01 0.00 33.98 5.14
636 1138 1.065928 GACGTCCAGTATGCCGGAG 59.934 63.158 5.05 0.00 33.98 4.63
651 1153 4.139234 GAGGGGTACACCGGCGTC 62.139 72.222 8.95 0.00 41.60 5.19
654 1156 4.487412 GGGTACACCGGCGTCGAG 62.487 72.222 12.93 5.47 39.00 4.04
655 1157 4.487412 GGTACACCGGCGTCGAGG 62.487 72.222 12.93 4.55 39.00 4.63
679 1181 4.742201 GCGGCAGCGTCTTGAGGA 62.742 66.667 0.00 0.00 0.00 3.71
680 1182 2.507992 CGGCAGCGTCTTGAGGAG 60.508 66.667 0.00 0.00 0.00 3.69
681 1183 2.125350 GGCAGCGTCTTGAGGAGG 60.125 66.667 0.00 0.00 0.00 4.30
682 1184 2.650116 GGCAGCGTCTTGAGGAGGA 61.650 63.158 0.00 0.00 32.10 3.71
683 1185 1.153667 GCAGCGTCTTGAGGAGGAG 60.154 63.158 0.00 0.00 32.10 3.69
684 1186 1.882989 GCAGCGTCTTGAGGAGGAGT 61.883 60.000 0.00 0.00 32.10 3.85
685 1187 0.172352 CAGCGTCTTGAGGAGGAGTC 59.828 60.000 0.00 0.00 32.10 3.36
686 1188 1.137825 GCGTCTTGAGGAGGAGTCG 59.862 63.158 0.00 0.00 32.10 4.18
687 1189 1.803943 CGTCTTGAGGAGGAGTCGG 59.196 63.158 0.00 0.00 32.10 4.79
688 1190 1.658686 CGTCTTGAGGAGGAGTCGGG 61.659 65.000 0.00 0.00 32.10 5.14
689 1191 1.682684 TCTTGAGGAGGAGTCGGGC 60.683 63.158 0.00 0.00 0.00 6.13
690 1192 3.068691 TTGAGGAGGAGTCGGGCG 61.069 66.667 0.00 0.00 0.00 6.13
705 1207 3.782244 GCGGCAGAGCGTTGAGTG 61.782 66.667 0.00 0.00 0.00 3.51
706 1208 2.049156 CGGCAGAGCGTTGAGTGA 60.049 61.111 0.00 0.00 0.00 3.41
707 1209 2.091112 CGGCAGAGCGTTGAGTGAG 61.091 63.158 0.00 0.00 0.00 3.51
708 1210 2.386660 GGCAGAGCGTTGAGTGAGC 61.387 63.158 0.00 0.00 0.00 4.26
709 1211 2.724708 GCAGAGCGTTGAGTGAGCG 61.725 63.158 0.00 0.00 35.78 5.03
710 1212 2.091112 CAGAGCGTTGAGTGAGCGG 61.091 63.158 0.00 0.00 35.78 5.52
711 1213 3.482783 GAGCGTTGAGTGAGCGGC 61.483 66.667 0.00 0.00 35.78 6.53
715 1217 4.681978 GTTGAGTGAGCGGCGGGT 62.682 66.667 9.78 0.00 0.00 5.28
716 1218 4.680237 TTGAGTGAGCGGCGGGTG 62.680 66.667 9.78 0.00 0.00 4.61
734 1236 4.717313 GGGGCGGCTTCGTTTCCT 62.717 66.667 9.56 0.00 36.07 3.36
735 1237 3.125573 GGGCGGCTTCGTTTCCTC 61.126 66.667 9.56 0.00 36.07 3.71
736 1238 3.125573 GGCGGCTTCGTTTCCTCC 61.126 66.667 0.00 0.00 36.07 4.30
737 1239 2.358247 GCGGCTTCGTTTCCTCCA 60.358 61.111 0.00 0.00 36.07 3.86
738 1240 1.964373 GCGGCTTCGTTTCCTCCAA 60.964 57.895 0.00 0.00 36.07 3.53
739 1241 1.512156 GCGGCTTCGTTTCCTCCAAA 61.512 55.000 0.00 0.00 36.07 3.28
740 1242 1.165270 CGGCTTCGTTTCCTCCAAAT 58.835 50.000 0.00 0.00 0.00 2.32
741 1243 1.130561 CGGCTTCGTTTCCTCCAAATC 59.869 52.381 0.00 0.00 0.00 2.17
742 1244 1.472878 GGCTTCGTTTCCTCCAAATCC 59.527 52.381 0.00 0.00 0.00 3.01
743 1245 2.437413 GCTTCGTTTCCTCCAAATCCT 58.563 47.619 0.00 0.00 0.00 3.24
744 1246 2.820197 GCTTCGTTTCCTCCAAATCCTT 59.180 45.455 0.00 0.00 0.00 3.36
745 1247 3.366374 GCTTCGTTTCCTCCAAATCCTTG 60.366 47.826 0.00 0.00 0.00 3.61
746 1248 3.780804 TCGTTTCCTCCAAATCCTTGA 57.219 42.857 0.00 0.00 34.14 3.02
747 1249 3.674997 TCGTTTCCTCCAAATCCTTGAG 58.325 45.455 0.00 0.00 34.14 3.02
748 1250 3.072476 TCGTTTCCTCCAAATCCTTGAGT 59.928 43.478 0.00 0.00 34.14 3.41
749 1251 3.437049 CGTTTCCTCCAAATCCTTGAGTC 59.563 47.826 0.00 0.00 34.14 3.36
750 1252 3.721087 TTCCTCCAAATCCTTGAGTCC 57.279 47.619 0.00 0.00 34.14 3.85
751 1253 1.916181 TCCTCCAAATCCTTGAGTCCC 59.084 52.381 0.00 0.00 34.14 4.46
752 1254 1.064389 CCTCCAAATCCTTGAGTCCCC 60.064 57.143 0.00 0.00 34.14 4.81
753 1255 0.999712 TCCAAATCCTTGAGTCCCCC 59.000 55.000 0.00 0.00 34.14 5.40
770 1272 2.896443 CCTCGAGGGCTGAGAACC 59.104 66.667 24.62 0.00 35.43 3.62
771 1273 1.984570 CCTCGAGGGCTGAGAACCA 60.985 63.158 24.62 0.00 35.43 3.67
772 1274 1.216710 CTCGAGGGCTGAGAACCAC 59.783 63.158 3.91 0.00 35.43 4.16
773 1275 2.125912 CGAGGGCTGAGAACCACG 60.126 66.667 0.10 0.10 34.75 4.94
774 1276 2.932234 CGAGGGCTGAGAACCACGT 61.932 63.158 5.57 0.00 36.34 4.49
775 1277 1.374758 GAGGGCTGAGAACCACGTG 60.375 63.158 9.08 9.08 0.00 4.49
776 1278 2.358737 GGGCTGAGAACCACGTGG 60.359 66.667 32.83 32.83 42.17 4.94
777 1279 2.741092 GGCTGAGAACCACGTGGA 59.259 61.111 40.21 17.21 38.94 4.02
810 1312 2.584391 CGGGGATCGAAGGGGGATC 61.584 68.421 0.00 0.00 42.43 3.36
811 1313 1.461461 GGGGATCGAAGGGGGATCA 60.461 63.158 0.00 0.00 41.62 2.92
813 1315 1.373059 GGATCGAAGGGGGATCAGC 59.627 63.158 0.00 0.00 41.62 4.26
899 1401 2.044793 ATCCTCTCCAAACCCTGTCA 57.955 50.000 0.00 0.00 0.00 3.58
902 1404 3.526899 TCCTCTCCAAACCCTGTCAATA 58.473 45.455 0.00 0.00 0.00 1.90
914 1416 3.386726 CCCTGTCAATACCCTCGTATCAA 59.613 47.826 0.00 0.00 33.90 2.57
1009 1511 1.375908 GTGGCAAGCACCTCATCGA 60.376 57.895 0.00 0.00 0.00 3.59
1912 2418 6.540083 AGAATAGAACCATGCATCATCATCA 58.460 36.000 0.00 0.00 0.00 3.07
2026 2564 3.282021 GTCTTAGGGCATCTTCAATGCA 58.718 45.455 11.69 0.00 46.21 3.96
2029 2567 0.822164 AGGGCATCTTCAATGCAAGC 59.178 50.000 11.69 0.00 46.21 4.01
2030 2568 0.179092 GGGCATCTTCAATGCAAGCC 60.179 55.000 11.69 0.00 46.21 4.35
2031 2569 0.526954 GGCATCTTCAATGCAAGCCG 60.527 55.000 11.69 0.00 46.21 5.52
2032 2570 1.143969 GCATCTTCAATGCAAGCCGC 61.144 55.000 5.18 0.00 44.00 6.53
2033 2571 0.454600 CATCTTCAATGCAAGCCGCT 59.545 50.000 0.00 0.00 43.06 5.52
2034 2572 1.135199 CATCTTCAATGCAAGCCGCTT 60.135 47.619 0.00 0.00 43.06 4.68
2035 2573 1.819928 TCTTCAATGCAAGCCGCTTA 58.180 45.000 5.03 0.00 43.06 3.09
2036 2574 2.368439 TCTTCAATGCAAGCCGCTTAT 58.632 42.857 5.03 0.00 43.06 1.73
2037 2575 3.540617 TCTTCAATGCAAGCCGCTTATA 58.459 40.909 5.03 0.00 43.06 0.98
2038 2576 3.561310 TCTTCAATGCAAGCCGCTTATAG 59.439 43.478 5.03 0.00 43.06 1.31
2039 2577 3.192541 TCAATGCAAGCCGCTTATAGA 57.807 42.857 5.03 0.00 43.06 1.98
2040 2578 3.540617 TCAATGCAAGCCGCTTATAGAA 58.459 40.909 5.03 0.00 43.06 2.10
2066 2604 8.739972 AGCGCTTAGGGAAATAAAAATATATGG 58.260 33.333 2.64 0.00 0.00 2.74
2138 2676 0.737219 TCGTAGGCGCTAGGAAGAAC 59.263 55.000 7.64 0.00 38.14 3.01
2202 2740 2.668212 CGCCCGCTTCCACTTCAA 60.668 61.111 0.00 0.00 0.00 2.69
2205 2743 1.600636 CCCGCTTCCACTTCAAGCA 60.601 57.895 5.35 0.00 45.66 3.91
2207 2745 1.165907 CCGCTTCCACTTCAAGCACA 61.166 55.000 5.35 0.00 45.66 4.57
2208 2746 0.662619 CGCTTCCACTTCAAGCACAA 59.337 50.000 5.35 0.00 45.66 3.33
2209 2747 1.334419 CGCTTCCACTTCAAGCACAAG 60.334 52.381 5.35 0.00 45.66 3.16
2210 2748 1.601412 GCTTCCACTTCAAGCACAAGC 60.601 52.381 0.00 0.34 44.87 4.01
2220 2758 4.606071 GCACAAGCGACAGGAGAT 57.394 55.556 0.00 0.00 0.00 2.75
2221 2759 3.741029 GCACAAGCGACAGGAGATA 57.259 52.632 0.00 0.00 0.00 1.98
2222 2760 1.565305 GCACAAGCGACAGGAGATAG 58.435 55.000 0.00 0.00 0.00 2.08
2223 2761 1.134965 GCACAAGCGACAGGAGATAGT 60.135 52.381 0.00 0.00 0.00 2.12
2224 2762 2.803451 CACAAGCGACAGGAGATAGTC 58.197 52.381 0.00 0.00 0.00 2.59
2233 2771 1.502640 GGAGATAGTCCGCCGATCG 59.497 63.158 8.51 8.51 34.84 3.69
2234 2772 0.954449 GGAGATAGTCCGCCGATCGA 60.954 60.000 18.66 0.00 41.67 3.59
2235 2773 0.873054 GAGATAGTCCGCCGATCGAA 59.127 55.000 18.66 0.00 41.67 3.71
2236 2774 1.469308 GAGATAGTCCGCCGATCGAAT 59.531 52.381 18.66 0.00 41.67 3.34
2237 2775 1.200252 AGATAGTCCGCCGATCGAATG 59.800 52.381 18.66 5.43 41.67 2.67
2238 2776 1.199327 GATAGTCCGCCGATCGAATGA 59.801 52.381 18.66 6.51 41.67 2.57
2239 2777 1.244816 TAGTCCGCCGATCGAATGAT 58.755 50.000 18.66 0.19 41.67 2.45
2240 2778 0.389391 AGTCCGCCGATCGAATGATT 59.611 50.000 18.66 3.38 41.67 2.57
2241 2779 1.202533 AGTCCGCCGATCGAATGATTT 60.203 47.619 18.66 0.05 41.67 2.17
2242 2780 1.597663 GTCCGCCGATCGAATGATTTT 59.402 47.619 18.66 0.00 41.67 1.82
2243 2781 1.597195 TCCGCCGATCGAATGATTTTG 59.403 47.619 18.66 0.00 41.67 2.44
2244 2782 1.597195 CCGCCGATCGAATGATTTTGA 59.403 47.619 18.66 0.00 41.67 2.69
2245 2783 2.348872 CCGCCGATCGAATGATTTTGAG 60.349 50.000 18.66 0.00 41.67 3.02
2246 2784 2.539688 CGCCGATCGAATGATTTTGAGA 59.460 45.455 18.66 0.00 41.67 3.27
2247 2785 3.185188 CGCCGATCGAATGATTTTGAGAT 59.815 43.478 18.66 0.00 41.67 2.75
2248 2786 4.385748 CGCCGATCGAATGATTTTGAGATA 59.614 41.667 18.66 0.00 41.67 1.98
2249 2787 5.062683 CGCCGATCGAATGATTTTGAGATAT 59.937 40.000 18.66 0.00 41.67 1.63
2250 2788 6.246449 GCCGATCGAATGATTTTGAGATATG 58.754 40.000 18.66 0.00 34.09 1.78
2251 2789 6.128445 GCCGATCGAATGATTTTGAGATATGT 60.128 38.462 18.66 0.00 34.09 2.29
2252 2790 7.063426 GCCGATCGAATGATTTTGAGATATGTA 59.937 37.037 18.66 0.00 34.09 2.29
2253 2791 8.925700 CCGATCGAATGATTTTGAGATATGTAA 58.074 33.333 18.66 0.00 34.09 2.41
2278 2816 8.480643 AATTTAGTCATGAGTTTAGGAGTTCG 57.519 34.615 8.68 0.00 0.00 3.95
2279 2817 6.829229 TTAGTCATGAGTTTAGGAGTTCGA 57.171 37.500 8.68 0.00 0.00 3.71
2280 2818 5.723672 AGTCATGAGTTTAGGAGTTCGAA 57.276 39.130 0.00 0.00 0.00 3.71
2281 2819 6.287589 AGTCATGAGTTTAGGAGTTCGAAT 57.712 37.500 0.00 0.00 0.00 3.34
2282 2820 6.702329 AGTCATGAGTTTAGGAGTTCGAATT 58.298 36.000 0.00 0.00 0.00 2.17
2283 2821 7.162082 AGTCATGAGTTTAGGAGTTCGAATTT 58.838 34.615 0.00 0.00 0.00 1.82
2284 2822 7.332182 AGTCATGAGTTTAGGAGTTCGAATTTC 59.668 37.037 0.00 2.46 0.00 2.17
2285 2823 6.594159 TCATGAGTTTAGGAGTTCGAATTTCC 59.406 38.462 18.80 18.80 0.00 3.13
2286 2824 5.860611 TGAGTTTAGGAGTTCGAATTTCCA 58.139 37.500 24.80 13.39 33.32 3.53
2287 2825 6.292923 TGAGTTTAGGAGTTCGAATTTCCAA 58.707 36.000 24.80 16.88 33.32 3.53
2288 2826 6.426937 TGAGTTTAGGAGTTCGAATTTCCAAG 59.573 38.462 24.80 0.00 33.32 3.61
2289 2827 5.181433 AGTTTAGGAGTTCGAATTTCCAAGC 59.819 40.000 24.80 19.04 33.32 4.01
2290 2828 3.425162 AGGAGTTCGAATTTCCAAGCT 57.575 42.857 24.80 7.26 33.32 3.74
2291 2829 3.339141 AGGAGTTCGAATTTCCAAGCTC 58.661 45.455 24.80 14.22 33.32 4.09
2292 2830 3.074412 GGAGTTCGAATTTCCAAGCTCA 58.926 45.455 20.57 0.00 0.00 4.26
2293 2831 3.120165 GGAGTTCGAATTTCCAAGCTCAC 60.120 47.826 20.57 4.65 0.00 3.51
2294 2832 3.476552 AGTTCGAATTTCCAAGCTCACA 58.523 40.909 0.00 0.00 0.00 3.58
2295 2833 3.882888 AGTTCGAATTTCCAAGCTCACAA 59.117 39.130 0.00 0.00 0.00 3.33
2296 2834 3.896648 TCGAATTTCCAAGCTCACAAC 57.103 42.857 0.00 0.00 0.00 3.32
2297 2835 3.476552 TCGAATTTCCAAGCTCACAACT 58.523 40.909 0.00 0.00 0.00 3.16
2298 2836 3.882888 TCGAATTTCCAAGCTCACAACTT 59.117 39.130 0.00 0.00 0.00 2.66
2299 2837 5.060506 TCGAATTTCCAAGCTCACAACTTA 58.939 37.500 0.00 0.00 0.00 2.24
2300 2838 5.179368 TCGAATTTCCAAGCTCACAACTTAG 59.821 40.000 0.00 0.00 0.00 2.18
2301 2839 4.773323 ATTTCCAAGCTCACAACTTAGC 57.227 40.909 0.00 0.00 39.08 3.09
2302 2840 1.795768 TCCAAGCTCACAACTTAGCG 58.204 50.000 0.00 0.00 43.63 4.26
2303 2841 1.343142 TCCAAGCTCACAACTTAGCGA 59.657 47.619 0.00 0.00 43.63 4.93
2304 2842 2.143122 CCAAGCTCACAACTTAGCGAA 58.857 47.619 0.00 0.00 43.63 4.70
2305 2843 2.158449 CCAAGCTCACAACTTAGCGAAG 59.842 50.000 4.88 4.88 43.63 3.79
2321 2859 1.528586 CGAAGCATGCTTTATCCCTCG 59.471 52.381 32.36 24.62 36.26 4.63
2322 2860 1.876156 GAAGCATGCTTTATCCCTCGG 59.124 52.381 32.36 0.00 36.26 4.63
2323 2861 0.109342 AGCATGCTTTATCCCTCGGG 59.891 55.000 16.30 0.00 0.00 5.14
2324 2862 0.890996 GCATGCTTTATCCCTCGGGG 60.891 60.000 11.37 0.00 46.11 5.73
2325 2863 0.474184 CATGCTTTATCCCTCGGGGT 59.526 55.000 0.00 0.00 44.74 4.95
2326 2864 1.133792 CATGCTTTATCCCTCGGGGTT 60.134 52.381 0.00 0.00 44.74 4.11
2327 2865 1.882308 TGCTTTATCCCTCGGGGTTA 58.118 50.000 0.00 0.00 44.74 2.85
2328 2866 1.766496 TGCTTTATCCCTCGGGGTTAG 59.234 52.381 0.00 0.00 44.74 2.34
2329 2867 1.542767 GCTTTATCCCTCGGGGTTAGC 60.543 57.143 0.00 4.40 44.74 3.09
2330 2868 1.071857 CTTTATCCCTCGGGGTTAGCC 59.928 57.143 0.00 0.00 44.74 3.93
2331 2869 1.117142 TTATCCCTCGGGGTTAGCCG 61.117 60.000 0.00 0.00 44.74 5.52
2335 2873 3.861797 CTCGGGGTTAGCCGCCAT 61.862 66.667 7.10 0.00 46.40 4.40
2336 2874 4.169696 TCGGGGTTAGCCGCCATG 62.170 66.667 7.10 0.00 46.40 3.66
2337 2875 4.483243 CGGGGTTAGCCGCCATGT 62.483 66.667 7.10 0.00 46.40 3.21
2338 2876 2.044352 GGGGTTAGCCGCCATGTT 60.044 61.111 0.69 0.00 45.40 2.71
2339 2877 1.680989 GGGGTTAGCCGCCATGTTT 60.681 57.895 0.69 0.00 45.40 2.83
2340 2878 1.510844 GGGTTAGCCGCCATGTTTG 59.489 57.895 0.00 0.00 34.97 2.93
2341 2879 0.963355 GGGTTAGCCGCCATGTTTGA 60.963 55.000 0.00 0.00 34.97 2.69
2342 2880 1.102978 GGTTAGCCGCCATGTTTGAT 58.897 50.000 0.00 0.00 0.00 2.57
2343 2881 1.476488 GGTTAGCCGCCATGTTTGATT 59.524 47.619 0.00 0.00 0.00 2.57
2344 2882 2.685897 GGTTAGCCGCCATGTTTGATTA 59.314 45.455 0.00 0.00 0.00 1.75
2345 2883 3.243068 GGTTAGCCGCCATGTTTGATTAG 60.243 47.826 0.00 0.00 0.00 1.73
2346 2884 1.392589 AGCCGCCATGTTTGATTAGG 58.607 50.000 0.00 0.00 0.00 2.69
2347 2885 0.249031 GCCGCCATGTTTGATTAGGC 60.249 55.000 0.00 0.00 41.86 3.93
2348 2886 0.385390 CCGCCATGTTTGATTAGGCC 59.615 55.000 0.00 0.00 42.28 5.19
2349 2887 1.102154 CGCCATGTTTGATTAGGCCA 58.898 50.000 5.01 0.00 42.28 5.36
2350 2888 1.202290 CGCCATGTTTGATTAGGCCAC 60.202 52.381 5.01 0.00 42.28 5.01
2351 2889 1.136891 GCCATGTTTGATTAGGCCACC 59.863 52.381 5.01 0.00 39.42 4.61
2352 2890 1.756538 CCATGTTTGATTAGGCCACCC 59.243 52.381 5.01 0.00 0.00 4.61
2353 2891 2.624029 CCATGTTTGATTAGGCCACCCT 60.624 50.000 5.01 0.00 45.61 4.34
2354 2892 2.214376 TGTTTGATTAGGCCACCCTG 57.786 50.000 5.01 0.00 42.90 4.45
2355 2893 0.817654 GTTTGATTAGGCCACCCTGC 59.182 55.000 5.01 0.00 42.90 4.85
2356 2894 0.407528 TTTGATTAGGCCACCCTGCA 59.592 50.000 5.01 0.00 42.90 4.41
2357 2895 0.034186 TTGATTAGGCCACCCTGCAG 60.034 55.000 6.78 6.78 42.90 4.41
2358 2896 0.913934 TGATTAGGCCACCCTGCAGA 60.914 55.000 17.39 0.00 42.90 4.26
2359 2897 0.255890 GATTAGGCCACCCTGCAGAA 59.744 55.000 17.39 0.00 42.90 3.02
2360 2898 0.034089 ATTAGGCCACCCTGCAGAAC 60.034 55.000 17.39 0.00 42.90 3.01
2361 2899 1.133809 TTAGGCCACCCTGCAGAACT 61.134 55.000 17.39 6.18 42.90 3.01
2362 2900 1.133809 TAGGCCACCCTGCAGAACTT 61.134 55.000 17.39 0.00 42.90 2.66
2363 2901 1.531602 GGCCACCCTGCAGAACTTT 60.532 57.895 17.39 0.00 0.00 2.66
2364 2902 1.527433 GGCCACCCTGCAGAACTTTC 61.527 60.000 17.39 0.00 0.00 2.62
2365 2903 0.538287 GCCACCCTGCAGAACTTTCT 60.538 55.000 17.39 0.00 38.25 2.52
2366 2904 1.986882 CCACCCTGCAGAACTTTCTT 58.013 50.000 17.39 0.00 34.74 2.52
2367 2905 2.310538 CCACCCTGCAGAACTTTCTTT 58.689 47.619 17.39 0.00 34.74 2.52
2368 2906 2.294512 CCACCCTGCAGAACTTTCTTTC 59.705 50.000 17.39 0.00 34.74 2.62
2369 2907 2.031682 CACCCTGCAGAACTTTCTTTCG 60.032 50.000 17.39 0.00 34.74 3.46
2370 2908 2.222027 CCCTGCAGAACTTTCTTTCGT 58.778 47.619 17.39 0.00 34.74 3.85
2371 2909 2.224314 CCCTGCAGAACTTTCTTTCGTC 59.776 50.000 17.39 0.00 34.74 4.20
2372 2910 2.224314 CCTGCAGAACTTTCTTTCGTCC 59.776 50.000 17.39 0.00 34.74 4.79
2373 2911 2.218603 TGCAGAACTTTCTTTCGTCCC 58.781 47.619 0.00 0.00 34.74 4.46
2374 2912 2.158813 TGCAGAACTTTCTTTCGTCCCT 60.159 45.455 0.00 0.00 34.74 4.20
2375 2913 2.224314 GCAGAACTTTCTTTCGTCCCTG 59.776 50.000 0.00 0.00 34.74 4.45
2376 2914 3.467803 CAGAACTTTCTTTCGTCCCTGT 58.532 45.455 0.00 0.00 34.74 4.00
2377 2915 4.628074 CAGAACTTTCTTTCGTCCCTGTA 58.372 43.478 0.00 0.00 34.74 2.74
2378 2916 5.054477 CAGAACTTTCTTTCGTCCCTGTAA 58.946 41.667 0.00 0.00 34.74 2.41
2379 2917 5.526111 CAGAACTTTCTTTCGTCCCTGTAAA 59.474 40.000 0.00 0.00 34.74 2.01
2380 2918 5.526479 AGAACTTTCTTTCGTCCCTGTAAAC 59.474 40.000 0.00 0.00 32.55 2.01
2381 2919 4.773013 ACTTTCTTTCGTCCCTGTAAACA 58.227 39.130 0.00 0.00 0.00 2.83
2382 2920 5.374071 ACTTTCTTTCGTCCCTGTAAACAT 58.626 37.500 0.00 0.00 0.00 2.71
2383 2921 5.826208 ACTTTCTTTCGTCCCTGTAAACATT 59.174 36.000 0.00 0.00 0.00 2.71
2384 2922 5.682943 TTCTTTCGTCCCTGTAAACATTG 57.317 39.130 0.00 0.00 0.00 2.82
2385 2923 4.710324 TCTTTCGTCCCTGTAAACATTGT 58.290 39.130 0.00 0.00 0.00 2.71
2386 2924 4.513692 TCTTTCGTCCCTGTAAACATTGTG 59.486 41.667 0.00 0.00 0.00 3.33
2387 2925 3.755112 TCGTCCCTGTAAACATTGTGA 57.245 42.857 0.00 0.00 0.00 3.58
2388 2926 3.395639 TCGTCCCTGTAAACATTGTGAC 58.604 45.455 0.00 0.00 0.00 3.67
2389 2927 2.156891 CGTCCCTGTAAACATTGTGACG 59.843 50.000 8.54 8.54 38.42 4.35
2390 2928 3.135994 GTCCCTGTAAACATTGTGACGT 58.864 45.455 0.00 0.00 0.00 4.34
2391 2929 3.185797 GTCCCTGTAAACATTGTGACGTC 59.814 47.826 9.11 9.11 0.00 4.34
2392 2930 3.070446 TCCCTGTAAACATTGTGACGTCT 59.930 43.478 17.92 0.00 0.00 4.18
2393 2931 3.813166 CCCTGTAAACATTGTGACGTCTT 59.187 43.478 17.92 3.09 0.00 3.01
2394 2932 4.992319 CCCTGTAAACATTGTGACGTCTTA 59.008 41.667 17.92 2.44 0.00 2.10
2395 2933 5.467399 CCCTGTAAACATTGTGACGTCTTAA 59.533 40.000 17.92 11.92 0.00 1.85
2396 2934 6.148811 CCCTGTAAACATTGTGACGTCTTAAT 59.851 38.462 17.92 13.65 0.00 1.40
2397 2935 7.332430 CCCTGTAAACATTGTGACGTCTTAATA 59.668 37.037 17.92 0.00 0.00 0.98
2398 2936 8.714179 CCTGTAAACATTGTGACGTCTTAATAA 58.286 33.333 17.92 1.40 0.00 1.40
2402 2940 8.502161 AAACATTGTGACGTCTTAATAAAAGC 57.498 30.769 17.92 0.00 0.00 3.51
2403 2941 7.435068 ACATTGTGACGTCTTAATAAAAGCT 57.565 32.000 17.92 0.00 0.00 3.74
2404 2942 7.871853 ACATTGTGACGTCTTAATAAAAGCTT 58.128 30.769 17.92 0.00 0.00 3.74
2405 2943 8.015658 ACATTGTGACGTCTTAATAAAAGCTTC 58.984 33.333 17.92 0.00 0.00 3.86
2406 2944 6.148270 TGTGACGTCTTAATAAAAGCTTCG 57.852 37.500 17.92 0.00 0.00 3.79
2407 2945 5.013859 GTGACGTCTTAATAAAAGCTTCGC 58.986 41.667 17.92 0.00 0.00 4.70
2408 2946 4.201551 TGACGTCTTAATAAAAGCTTCGCG 60.202 41.667 17.92 0.00 0.00 5.87
2409 2947 3.922240 ACGTCTTAATAAAAGCTTCGCGA 59.078 39.130 3.71 3.71 0.00 5.87
2410 2948 4.031426 ACGTCTTAATAAAAGCTTCGCGAG 59.969 41.667 9.59 4.97 0.00 5.03
2411 2949 4.548346 CGTCTTAATAAAAGCTTCGCGAGG 60.548 45.833 14.69 14.69 0.00 4.63
2412 2950 4.329256 GTCTTAATAAAAGCTTCGCGAGGT 59.671 41.667 19.98 11.81 37.82 3.85
2414 2952 3.471495 AATAAAAGCTTCGCGAGGTTG 57.529 42.857 19.98 7.98 44.94 3.77
2415 2953 1.873698 TAAAAGCTTCGCGAGGTTGT 58.126 45.000 19.98 16.72 44.94 3.32
2416 2954 0.586802 AAAAGCTTCGCGAGGTTGTC 59.413 50.000 19.98 2.72 44.94 3.18
2417 2955 0.249911 AAAGCTTCGCGAGGTTGTCT 60.250 50.000 19.98 5.19 44.94 3.41
2418 2956 0.667792 AAGCTTCGCGAGGTTGTCTC 60.668 55.000 19.98 1.57 44.07 3.36
2419 2957 1.372997 GCTTCGCGAGGTTGTCTCA 60.373 57.895 19.98 0.00 42.55 3.27
2420 2958 0.944311 GCTTCGCGAGGTTGTCTCAA 60.944 55.000 19.98 0.00 42.55 3.02
2421 2959 1.497991 CTTCGCGAGGTTGTCTCAAA 58.502 50.000 9.59 0.00 42.55 2.69
2422 2960 1.864711 CTTCGCGAGGTTGTCTCAAAA 59.135 47.619 9.59 0.00 42.55 2.44
2423 2961 1.942677 TCGCGAGGTTGTCTCAAAAA 58.057 45.000 3.71 0.00 42.55 1.94
2471 3009 1.131126 CATGTGACGCCAGGAATTGAC 59.869 52.381 0.00 0.00 0.00 3.18
2484 3022 0.893727 AATTGACGGTCCAACTGCCC 60.894 55.000 5.55 0.00 0.00 5.36
2494 3032 1.550130 CCAACTGCCCTTCTACCGGA 61.550 60.000 9.46 0.00 0.00 5.14
2498 3036 1.633945 ACTGCCCTTCTACCGGAAATT 59.366 47.619 9.46 0.00 33.07 1.82
2499 3037 2.841881 ACTGCCCTTCTACCGGAAATTA 59.158 45.455 9.46 0.00 33.07 1.40
2500 3038 3.264964 ACTGCCCTTCTACCGGAAATTAA 59.735 43.478 9.46 0.00 33.07 1.40
2501 3039 4.079958 ACTGCCCTTCTACCGGAAATTAAT 60.080 41.667 9.46 0.00 33.07 1.40
2502 3040 4.862371 TGCCCTTCTACCGGAAATTAATT 58.138 39.130 9.46 0.00 33.07 1.40
2503 3041 4.885325 TGCCCTTCTACCGGAAATTAATTC 59.115 41.667 9.46 0.00 37.31 2.17
2515 3053 2.833631 ATTAATTCCTAGCGTCCCCG 57.166 50.000 0.00 0.00 37.07 5.73
2516 3054 1.488390 TTAATTCCTAGCGTCCCCGT 58.512 50.000 0.00 0.00 36.15 5.28
2517 3055 1.488390 TAATTCCTAGCGTCCCCGTT 58.512 50.000 0.00 0.00 36.15 4.44
2518 3056 0.107848 AATTCCTAGCGTCCCCGTTG 60.108 55.000 0.00 0.00 36.15 4.10
2519 3057 1.968050 ATTCCTAGCGTCCCCGTTGG 61.968 60.000 0.00 0.00 36.15 3.77
2520 3058 3.072468 CCTAGCGTCCCCGTTGGA 61.072 66.667 0.00 0.00 42.41 3.53
2527 3065 4.041762 TCCCCGTTGGACATGCCC 62.042 66.667 0.00 0.00 38.61 5.36
2528 3066 4.047125 CCCCGTTGGACATGCCCT 62.047 66.667 0.00 0.00 35.39 5.19
2529 3067 2.035626 CCCGTTGGACATGCCCTT 59.964 61.111 0.00 0.00 34.97 3.95
2530 3068 1.301623 CCCGTTGGACATGCCCTTA 59.698 57.895 0.00 0.00 34.97 2.69
2531 3069 0.106719 CCCGTTGGACATGCCCTTAT 60.107 55.000 0.00 0.00 34.97 1.73
2532 3070 1.308998 CCGTTGGACATGCCCTTATC 58.691 55.000 0.00 0.00 34.97 1.75
2533 3071 1.134098 CCGTTGGACATGCCCTTATCT 60.134 52.381 0.00 0.00 34.97 1.98
2534 3072 2.643551 CGTTGGACATGCCCTTATCTT 58.356 47.619 0.00 0.00 34.97 2.40
2535 3073 3.433031 CCGTTGGACATGCCCTTATCTTA 60.433 47.826 0.00 0.00 34.97 2.10
2536 3074 3.809832 CGTTGGACATGCCCTTATCTTAG 59.190 47.826 0.00 0.00 34.97 2.18
2537 3075 4.683400 CGTTGGACATGCCCTTATCTTAGT 60.683 45.833 0.00 0.00 34.97 2.24
2538 3076 5.452776 CGTTGGACATGCCCTTATCTTAGTA 60.453 44.000 0.00 0.00 34.97 1.82
2539 3077 6.534634 GTTGGACATGCCCTTATCTTAGTAT 58.465 40.000 0.00 0.00 34.97 2.12
2540 3078 7.524863 CGTTGGACATGCCCTTATCTTAGTATA 60.525 40.741 0.00 0.00 34.97 1.47
2541 3079 7.865530 TGGACATGCCCTTATCTTAGTATAA 57.134 36.000 0.00 0.00 34.97 0.98
2542 3080 8.449423 TGGACATGCCCTTATCTTAGTATAAT 57.551 34.615 0.00 0.00 34.97 1.28
2543 3081 8.890472 TGGACATGCCCTTATCTTAGTATAATT 58.110 33.333 0.00 0.00 34.97 1.40
2544 3082 9.740710 GGACATGCCCTTATCTTAGTATAATTT 57.259 33.333 0.00 0.00 0.00 1.82
2591 3129 4.530875 AGGCACTTATTTTGAGATGGAGG 58.469 43.478 0.00 0.00 27.25 4.30
2855 3400 3.812053 CCATAAGAGGCACAAGTAGATGC 59.188 47.826 0.00 0.00 41.29 3.91
2857 3402 3.423539 AAGAGGCACAAGTAGATGCAA 57.576 42.857 0.00 0.00 43.93 4.08
2867 3412 4.051922 CAAGTAGATGCAAGGTATCGTCC 58.948 47.826 0.00 0.00 0.00 4.79
2920 3465 1.529438 CTAACACGCAACACCGACATT 59.471 47.619 0.00 0.00 0.00 2.71
2944 3489 0.602562 CCGAACCCTACGGTACAACA 59.397 55.000 0.00 0.00 43.71 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 194 5.594317 GCAGTACCCACCAGATTATTCAATT 59.406 40.000 0.00 0.00 0.00 2.32
274 277 5.637006 TGCGATTGTGCCTTTTAGTAATT 57.363 34.783 0.00 0.00 0.00 1.40
311 316 9.346005 TCATTTCTGCTGTGATGTAATTATCAT 57.654 29.630 0.00 0.00 39.13 2.45
347 515 8.519799 TCTTTTTGGTAAACTGAGACTTTGAT 57.480 30.769 0.00 0.00 0.00 2.57
449 755 1.531149 CGTCACCATCACCAAGTTCAC 59.469 52.381 0.00 0.00 0.00 3.18
450 756 1.542328 CCGTCACCATCACCAAGTTCA 60.542 52.381 0.00 0.00 0.00 3.18
453 759 1.302511 GCCGTCACCATCACCAAGT 60.303 57.895 0.00 0.00 0.00 3.16
454 760 0.606401 AAGCCGTCACCATCACCAAG 60.606 55.000 0.00 0.00 0.00 3.61
455 761 0.179004 AAAGCCGTCACCATCACCAA 60.179 50.000 0.00 0.00 0.00 3.67
456 762 0.888736 CAAAGCCGTCACCATCACCA 60.889 55.000 0.00 0.00 0.00 4.17
460 766 1.068541 GGAAACAAAGCCGTCACCATC 60.069 52.381 0.00 0.00 0.00 3.51
461 767 0.958822 GGAAACAAAGCCGTCACCAT 59.041 50.000 0.00 0.00 0.00 3.55
472 802 0.034337 CCGTCTCCGAGGGAAACAAA 59.966 55.000 0.00 0.00 39.66 2.83
617 1119 3.207354 CCGGCATACTGGACGTCT 58.793 61.111 16.46 0.00 46.41 4.18
623 1125 1.458777 TACCCCTCCGGCATACTGG 60.459 63.158 0.00 0.00 44.63 4.00
624 1126 1.046472 TGTACCCCTCCGGCATACTG 61.046 60.000 0.00 0.00 33.26 2.74
625 1127 1.047034 GTGTACCCCTCCGGCATACT 61.047 60.000 0.00 0.00 33.26 2.12
626 1128 1.444672 GTGTACCCCTCCGGCATAC 59.555 63.158 0.00 0.00 33.26 2.39
627 1129 1.763256 GGTGTACCCCTCCGGCATA 60.763 63.158 0.00 0.00 33.26 3.14
628 1130 3.087906 GGTGTACCCCTCCGGCAT 61.088 66.667 0.00 0.00 33.26 4.40
634 1136 4.139234 GACGCCGGTGTACCCCTC 62.139 72.222 23.00 3.18 0.00 4.30
637 1139 4.487412 CTCGACGCCGGTGTACCC 62.487 72.222 23.00 8.04 36.24 3.69
638 1140 4.487412 CCTCGACGCCGGTGTACC 62.487 72.222 23.00 8.86 36.24 3.34
662 1164 4.742201 TCCTCAAGACGCTGCCGC 62.742 66.667 0.00 0.00 38.22 6.53
663 1165 2.507992 CTCCTCAAGACGCTGCCG 60.508 66.667 0.00 0.00 41.14 5.69
664 1166 2.125350 CCTCCTCAAGACGCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
665 1167 1.153667 CTCCTCCTCAAGACGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
666 1168 0.172352 GACTCCTCCTCAAGACGCTG 59.828 60.000 0.00 0.00 0.00 5.18
667 1169 1.309499 CGACTCCTCCTCAAGACGCT 61.309 60.000 0.00 0.00 0.00 5.07
668 1170 1.137825 CGACTCCTCCTCAAGACGC 59.862 63.158 0.00 0.00 0.00 5.19
669 1171 1.658686 CCCGACTCCTCCTCAAGACG 61.659 65.000 0.00 0.00 0.00 4.18
670 1172 1.950973 GCCCGACTCCTCCTCAAGAC 61.951 65.000 0.00 0.00 0.00 3.01
671 1173 1.682684 GCCCGACTCCTCCTCAAGA 60.683 63.158 0.00 0.00 0.00 3.02
672 1174 2.896443 GCCCGACTCCTCCTCAAG 59.104 66.667 0.00 0.00 0.00 3.02
673 1175 3.068691 CGCCCGACTCCTCCTCAA 61.069 66.667 0.00 0.00 0.00 3.02
688 1190 3.782244 CACTCAACGCTCTGCCGC 61.782 66.667 0.00 0.00 0.00 6.53
689 1191 2.049156 TCACTCAACGCTCTGCCG 60.049 61.111 0.00 0.00 0.00 5.69
690 1192 2.386660 GCTCACTCAACGCTCTGCC 61.387 63.158 0.00 0.00 0.00 4.85
691 1193 2.724708 CGCTCACTCAACGCTCTGC 61.725 63.158 0.00 0.00 0.00 4.26
692 1194 2.091112 CCGCTCACTCAACGCTCTG 61.091 63.158 0.00 0.00 0.00 3.35
693 1195 2.259818 CCGCTCACTCAACGCTCT 59.740 61.111 0.00 0.00 0.00 4.09
694 1196 3.482783 GCCGCTCACTCAACGCTC 61.483 66.667 0.00 0.00 0.00 5.03
698 1200 4.681978 ACCCGCCGCTCACTCAAC 62.682 66.667 0.00 0.00 0.00 3.18
699 1201 4.680237 CACCCGCCGCTCACTCAA 62.680 66.667 0.00 0.00 0.00 3.02
717 1219 4.717313 AGGAAACGAAGCCGCCCC 62.717 66.667 0.00 0.00 39.95 5.80
718 1220 3.125573 GAGGAAACGAAGCCGCCC 61.126 66.667 0.00 0.00 39.95 6.13
719 1221 3.125573 GGAGGAAACGAAGCCGCC 61.126 66.667 0.00 0.00 39.95 6.13
720 1222 1.512156 TTTGGAGGAAACGAAGCCGC 61.512 55.000 0.00 0.00 39.95 6.53
721 1223 1.130561 GATTTGGAGGAAACGAAGCCG 59.869 52.381 0.00 0.00 42.50 5.52
722 1224 1.472878 GGATTTGGAGGAAACGAAGCC 59.527 52.381 0.00 0.00 0.00 4.35
723 1225 2.437413 AGGATTTGGAGGAAACGAAGC 58.563 47.619 0.00 0.00 0.00 3.86
724 1226 4.072131 TCAAGGATTTGGAGGAAACGAAG 58.928 43.478 0.00 0.00 34.97 3.79
725 1227 4.072131 CTCAAGGATTTGGAGGAAACGAA 58.928 43.478 0.00 0.00 34.97 3.85
726 1228 3.072476 ACTCAAGGATTTGGAGGAAACGA 59.928 43.478 0.00 0.00 34.97 3.85
727 1229 3.412386 ACTCAAGGATTTGGAGGAAACG 58.588 45.455 0.00 0.00 34.97 3.60
728 1230 3.759086 GGACTCAAGGATTTGGAGGAAAC 59.241 47.826 0.00 0.00 34.97 2.78
729 1231 3.245264 GGGACTCAAGGATTTGGAGGAAA 60.245 47.826 0.00 0.00 34.97 3.13
730 1232 2.308866 GGGACTCAAGGATTTGGAGGAA 59.691 50.000 0.00 0.00 34.97 3.36
731 1233 1.916181 GGGACTCAAGGATTTGGAGGA 59.084 52.381 0.00 0.00 34.97 3.71
732 1234 1.064389 GGGGACTCAAGGATTTGGAGG 60.064 57.143 0.00 0.00 34.97 4.30
733 1235 1.064389 GGGGGACTCAAGGATTTGGAG 60.064 57.143 0.00 0.00 34.97 3.86
734 1236 0.999712 GGGGGACTCAAGGATTTGGA 59.000 55.000 0.00 0.00 34.97 3.53
735 1237 3.596362 GGGGGACTCAAGGATTTGG 57.404 57.895 0.00 0.00 34.97 3.28
753 1255 1.984570 TGGTTCTCAGCCCTCGAGG 60.985 63.158 25.36 25.36 39.47 4.63
754 1256 1.216710 GTGGTTCTCAGCCCTCGAG 59.783 63.158 5.13 5.13 0.00 4.04
755 1257 2.636412 CGTGGTTCTCAGCCCTCGA 61.636 63.158 0.00 0.00 39.42 4.04
756 1258 2.125912 CGTGGTTCTCAGCCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
757 1259 1.374758 CACGTGGTTCTCAGCCCTC 60.375 63.158 7.95 0.00 0.00 4.30
758 1260 2.743718 CACGTGGTTCTCAGCCCT 59.256 61.111 7.95 0.00 0.00 5.19
759 1261 2.185310 ATCCACGTGGTTCTCAGCCC 62.185 60.000 32.74 0.00 36.34 5.19
760 1262 0.535335 TATCCACGTGGTTCTCAGCC 59.465 55.000 32.74 0.00 36.34 4.85
761 1263 1.471676 CCTATCCACGTGGTTCTCAGC 60.472 57.143 32.74 0.00 36.34 4.26
762 1264 2.099921 CTCCTATCCACGTGGTTCTCAG 59.900 54.545 32.74 21.17 36.34 3.35
763 1265 2.100197 CTCCTATCCACGTGGTTCTCA 58.900 52.381 32.74 15.05 36.34 3.27
764 1266 1.409427 CCTCCTATCCACGTGGTTCTC 59.591 57.143 32.74 0.00 36.34 2.87
765 1267 1.486211 CCTCCTATCCACGTGGTTCT 58.514 55.000 32.74 20.63 36.34 3.01
766 1268 0.464452 CCCTCCTATCCACGTGGTTC 59.536 60.000 32.74 0.00 36.34 3.62
767 1269 0.981277 CCCCTCCTATCCACGTGGTT 60.981 60.000 32.74 26.83 36.34 3.67
768 1270 1.382695 CCCCTCCTATCCACGTGGT 60.383 63.158 32.74 22.03 36.34 4.16
769 1271 2.140792 CCCCCTCCTATCCACGTGG 61.141 68.421 29.26 29.26 0.00 4.94
770 1272 1.382695 ACCCCCTCCTATCCACGTG 60.383 63.158 9.08 9.08 0.00 4.49
771 1273 1.075450 GACCCCCTCCTATCCACGT 60.075 63.158 0.00 0.00 0.00 4.49
772 1274 2.201022 CGACCCCCTCCTATCCACG 61.201 68.421 0.00 0.00 0.00 4.94
773 1275 1.114119 GTCGACCCCCTCCTATCCAC 61.114 65.000 3.51 0.00 0.00 4.02
774 1276 1.232216 GTCGACCCCCTCCTATCCA 59.768 63.158 3.51 0.00 0.00 3.41
775 1277 1.902432 CGTCGACCCCCTCCTATCC 60.902 68.421 10.58 0.00 0.00 2.59
776 1278 1.902432 CCGTCGACCCCCTCCTATC 60.902 68.421 10.58 0.00 0.00 2.08
777 1279 2.197875 CCGTCGACCCCCTCCTAT 59.802 66.667 10.58 0.00 0.00 2.57
810 1312 1.298563 CACGTGGTTTGCACAGCTG 60.299 57.895 13.48 13.48 0.00 4.24
811 1313 1.029408 TTCACGTGGTTTGCACAGCT 61.029 50.000 17.00 0.00 0.00 4.24
813 1315 1.135546 TGTTTCACGTGGTTTGCACAG 60.136 47.619 17.00 0.00 0.00 3.66
853 1355 3.388841 GAGGCCCAGAAACCTCGA 58.611 61.111 0.00 0.00 42.92 4.04
887 1389 2.723273 GAGGGTATTGACAGGGTTTGG 58.277 52.381 0.00 0.00 0.00 3.28
893 1395 4.665833 TTGATACGAGGGTATTGACAGG 57.334 45.455 0.00 0.00 39.44 4.00
1009 1511 3.320879 CTCCCGCTGACCATGCAGT 62.321 63.158 0.00 0.00 38.17 4.40
1258 1760 3.606065 AAGACGACGAGGTTCGCGG 62.606 63.158 6.13 0.00 45.12 6.46
1912 2418 8.515414 CAATTACAAGATGCAGATGATGATGAT 58.485 33.333 0.00 0.00 0.00 2.45
1993 2531 5.249780 TGCCCTAAGACACTTATTTTGGA 57.750 39.130 0.00 0.00 0.00 3.53
2000 2538 5.755409 TTGAAGATGCCCTAAGACACTTA 57.245 39.130 0.00 0.00 0.00 2.24
2032 2570 8.603242 TTTATTTCCCTAAGCGCTTCTATAAG 57.397 34.615 28.82 17.78 35.68 1.73
2033 2571 8.967664 TTTTATTTCCCTAAGCGCTTCTATAA 57.032 30.769 28.82 17.24 0.00 0.98
2034 2572 8.967664 TTTTTATTTCCCTAAGCGCTTCTATA 57.032 30.769 28.82 8.22 0.00 1.31
2035 2573 7.875327 TTTTTATTTCCCTAAGCGCTTCTAT 57.125 32.000 28.82 13.66 0.00 1.98
2036 2574 7.875327 ATTTTTATTTCCCTAAGCGCTTCTA 57.125 32.000 28.82 9.51 0.00 2.10
2037 2575 6.775594 ATTTTTATTTCCCTAAGCGCTTCT 57.224 33.333 28.82 6.33 0.00 2.85
2040 2578 8.739972 CCATATATTTTTATTTCCCTAAGCGCT 58.260 33.333 2.64 2.64 0.00 5.92
2066 2604 8.182227 AGCGCTTGGATATTTCTTTAGTTTTAC 58.818 33.333 2.64 0.00 0.00 2.01
2121 2659 0.248949 CCGTTCTTCCTAGCGCCTAC 60.249 60.000 2.29 0.00 0.00 3.18
2201 2739 0.322975 ATCTCCTGTCGCTTGTGCTT 59.677 50.000 0.00 0.00 36.97 3.91
2202 2740 1.135915 CTATCTCCTGTCGCTTGTGCT 59.864 52.381 0.00 0.00 36.97 4.40
2205 2743 1.751924 GGACTATCTCCTGTCGCTTGT 59.248 52.381 0.00 0.00 35.89 3.16
2207 2745 1.025812 CGGACTATCTCCTGTCGCTT 58.974 55.000 0.00 0.00 36.80 4.68
2208 2746 1.448922 GCGGACTATCTCCTGTCGCT 61.449 60.000 0.00 0.00 36.80 4.93
2209 2747 1.008309 GCGGACTATCTCCTGTCGC 60.008 63.158 0.00 0.00 36.80 5.19
2210 2748 1.655329 GGCGGACTATCTCCTGTCG 59.345 63.158 0.00 0.00 36.80 4.35
2211 2749 0.818445 TCGGCGGACTATCTCCTGTC 60.818 60.000 7.21 0.00 36.80 3.51
2212 2750 0.178987 ATCGGCGGACTATCTCCTGT 60.179 55.000 7.21 0.00 36.80 4.00
2213 2751 0.523966 GATCGGCGGACTATCTCCTG 59.476 60.000 7.21 0.00 36.80 3.86
2214 2752 0.956410 CGATCGGCGGACTATCTCCT 60.956 60.000 7.38 0.00 36.80 3.69
2215 2753 0.954449 TCGATCGGCGGACTATCTCC 60.954 60.000 16.41 0.00 41.33 3.71
2216 2754 0.873054 TTCGATCGGCGGACTATCTC 59.127 55.000 16.41 0.00 41.33 2.75
2217 2755 1.200252 CATTCGATCGGCGGACTATCT 59.800 52.381 16.41 0.00 41.33 1.98
2218 2756 1.199327 TCATTCGATCGGCGGACTATC 59.801 52.381 16.41 1.08 41.33 2.08
2219 2757 1.244816 TCATTCGATCGGCGGACTAT 58.755 50.000 16.41 0.00 41.33 2.12
2220 2758 1.244816 ATCATTCGATCGGCGGACTA 58.755 50.000 16.41 0.00 41.33 2.59
2221 2759 0.389391 AATCATTCGATCGGCGGACT 59.611 50.000 16.41 0.00 41.33 3.85
2222 2760 1.217882 AAATCATTCGATCGGCGGAC 58.782 50.000 16.41 0.01 41.33 4.79
2223 2761 1.597195 CAAAATCATTCGATCGGCGGA 59.403 47.619 16.41 10.39 41.33 5.54
2224 2762 1.597195 TCAAAATCATTCGATCGGCGG 59.403 47.619 16.41 4.89 41.33 6.13
2225 2763 2.539688 TCTCAAAATCATTCGATCGGCG 59.460 45.455 16.41 0.00 42.69 6.46
2226 2764 4.739046 ATCTCAAAATCATTCGATCGGC 57.261 40.909 16.41 0.00 0.00 5.54
2227 2765 7.356641 ACATATCTCAAAATCATTCGATCGG 57.643 36.000 16.41 0.00 0.00 4.18
2252 2790 8.936864 CGAACTCCTAAACTCATGACTAAATTT 58.063 33.333 0.00 0.00 0.00 1.82
2253 2791 8.311836 TCGAACTCCTAAACTCATGACTAAATT 58.688 33.333 0.00 0.00 0.00 1.82
2254 2792 7.837863 TCGAACTCCTAAACTCATGACTAAAT 58.162 34.615 0.00 0.00 0.00 1.40
2255 2793 7.223260 TCGAACTCCTAAACTCATGACTAAA 57.777 36.000 0.00 0.00 0.00 1.85
2256 2794 6.829229 TCGAACTCCTAAACTCATGACTAA 57.171 37.500 0.00 0.00 0.00 2.24
2257 2795 6.829229 TTCGAACTCCTAAACTCATGACTA 57.171 37.500 0.00 0.00 0.00 2.59
2258 2796 5.723672 TTCGAACTCCTAAACTCATGACT 57.276 39.130 0.00 0.00 0.00 3.41
2259 2797 6.969828 AATTCGAACTCCTAAACTCATGAC 57.030 37.500 0.00 0.00 0.00 3.06
2260 2798 6.594159 GGAAATTCGAACTCCTAAACTCATGA 59.406 38.462 17.21 0.00 0.00 3.07
2261 2799 6.371548 TGGAAATTCGAACTCCTAAACTCATG 59.628 38.462 22.38 0.00 0.00 3.07
2262 2800 6.472887 TGGAAATTCGAACTCCTAAACTCAT 58.527 36.000 22.38 0.00 0.00 2.90
2263 2801 5.860611 TGGAAATTCGAACTCCTAAACTCA 58.139 37.500 22.38 4.52 0.00 3.41
2264 2802 6.620949 GCTTGGAAATTCGAACTCCTAAACTC 60.621 42.308 22.38 7.92 0.00 3.01
2265 2803 5.181433 GCTTGGAAATTCGAACTCCTAAACT 59.819 40.000 22.38 0.00 0.00 2.66
2266 2804 5.181433 AGCTTGGAAATTCGAACTCCTAAAC 59.819 40.000 22.38 13.23 0.00 2.01
2267 2805 5.313712 AGCTTGGAAATTCGAACTCCTAAA 58.686 37.500 22.38 12.42 0.00 1.85
2268 2806 4.906618 AGCTTGGAAATTCGAACTCCTAA 58.093 39.130 22.38 15.66 0.00 2.69
2269 2807 4.020573 TGAGCTTGGAAATTCGAACTCCTA 60.021 41.667 22.38 16.51 0.00 2.94
2270 2808 3.244561 TGAGCTTGGAAATTCGAACTCCT 60.245 43.478 22.38 8.02 0.00 3.69
2271 2809 3.074412 TGAGCTTGGAAATTCGAACTCC 58.926 45.455 17.52 17.52 0.00 3.85
2272 2810 3.498397 TGTGAGCTTGGAAATTCGAACTC 59.502 43.478 0.00 0.00 0.00 3.01
2273 2811 3.476552 TGTGAGCTTGGAAATTCGAACT 58.523 40.909 0.00 0.00 0.00 3.01
2274 2812 3.896648 TGTGAGCTTGGAAATTCGAAC 57.103 42.857 0.00 0.00 0.00 3.95
2275 2813 3.882888 AGTTGTGAGCTTGGAAATTCGAA 59.117 39.130 0.00 0.00 0.00 3.71
2276 2814 3.476552 AGTTGTGAGCTTGGAAATTCGA 58.523 40.909 0.00 0.00 0.00 3.71
2277 2815 3.904136 AGTTGTGAGCTTGGAAATTCG 57.096 42.857 0.00 0.00 0.00 3.34
2278 2816 5.157067 GCTAAGTTGTGAGCTTGGAAATTC 58.843 41.667 0.00 0.00 35.73 2.17
2279 2817 4.320494 CGCTAAGTTGTGAGCTTGGAAATT 60.320 41.667 0.00 0.00 36.50 1.82
2280 2818 3.189287 CGCTAAGTTGTGAGCTTGGAAAT 59.811 43.478 0.00 0.00 36.50 2.17
2281 2819 2.548057 CGCTAAGTTGTGAGCTTGGAAA 59.452 45.455 0.00 0.00 36.50 3.13
2282 2820 2.143122 CGCTAAGTTGTGAGCTTGGAA 58.857 47.619 0.00 0.00 36.50 3.53
2283 2821 1.343142 TCGCTAAGTTGTGAGCTTGGA 59.657 47.619 0.00 0.00 36.50 3.53
2284 2822 1.795768 TCGCTAAGTTGTGAGCTTGG 58.204 50.000 0.00 0.00 36.50 3.61
2285 2823 2.412065 GCTTCGCTAAGTTGTGAGCTTG 60.412 50.000 0.00 0.00 36.50 4.01
2286 2824 1.801178 GCTTCGCTAAGTTGTGAGCTT 59.199 47.619 0.00 0.00 36.50 3.74
2287 2825 1.270305 TGCTTCGCTAAGTTGTGAGCT 60.270 47.619 0.00 0.00 36.50 4.09
2288 2826 1.148310 TGCTTCGCTAAGTTGTGAGC 58.852 50.000 0.00 0.00 34.99 4.26
2289 2827 2.475187 GCATGCTTCGCTAAGTTGTGAG 60.475 50.000 11.37 0.00 34.99 3.51
2290 2828 1.464608 GCATGCTTCGCTAAGTTGTGA 59.535 47.619 11.37 0.00 34.99 3.58
2291 2829 1.466167 AGCATGCTTCGCTAAGTTGTG 59.534 47.619 16.30 0.00 38.15 3.33
2292 2830 1.813513 AGCATGCTTCGCTAAGTTGT 58.186 45.000 16.30 0.00 38.15 3.32
2293 2831 2.907910 AAGCATGCTTCGCTAAGTTG 57.092 45.000 27.21 0.12 39.29 3.16
2294 2832 4.035675 GGATAAAGCATGCTTCGCTAAGTT 59.964 41.667 32.01 16.73 39.29 2.66
2295 2833 3.561725 GGATAAAGCATGCTTCGCTAAGT 59.438 43.478 32.01 17.45 39.29 2.24
2296 2834 3.058639 GGGATAAAGCATGCTTCGCTAAG 60.059 47.826 32.01 0.00 39.29 2.18
2297 2835 2.878406 GGGATAAAGCATGCTTCGCTAA 59.122 45.455 32.01 15.84 39.29 3.09
2298 2836 2.104792 AGGGATAAAGCATGCTTCGCTA 59.895 45.455 32.01 21.11 39.29 4.26
2299 2837 1.133976 AGGGATAAAGCATGCTTCGCT 60.134 47.619 32.01 27.53 42.98 4.93
2300 2838 1.265365 GAGGGATAAAGCATGCTTCGC 59.735 52.381 32.01 25.90 34.84 4.70
2301 2839 1.528586 CGAGGGATAAAGCATGCTTCG 59.471 52.381 32.01 24.38 45.40 3.79
2302 2840 1.876156 CCGAGGGATAAAGCATGCTTC 59.124 52.381 32.01 20.18 34.84 3.86
2303 2841 1.477558 CCCGAGGGATAAAGCATGCTT 60.478 52.381 27.21 27.21 37.50 3.91
2304 2842 0.109342 CCCGAGGGATAAAGCATGCT 59.891 55.000 16.30 16.30 37.50 3.79
2305 2843 2.633860 CCCGAGGGATAAAGCATGC 58.366 57.895 10.51 10.51 37.50 4.06
2321 2859 1.680989 AAACATGGCGGCTAACCCC 60.681 57.895 11.43 0.00 0.00 4.95
2322 2860 0.963355 TCAAACATGGCGGCTAACCC 60.963 55.000 11.43 0.00 0.00 4.11
2323 2861 1.102978 ATCAAACATGGCGGCTAACC 58.897 50.000 11.43 0.00 0.00 2.85
2324 2862 2.939460 AATCAAACATGGCGGCTAAC 57.061 45.000 11.43 0.00 0.00 2.34
2325 2863 2.948979 CCTAATCAAACATGGCGGCTAA 59.051 45.455 11.43 0.00 0.00 3.09
2326 2864 2.571212 CCTAATCAAACATGGCGGCTA 58.429 47.619 11.43 0.00 0.00 3.93
2327 2865 1.392589 CCTAATCAAACATGGCGGCT 58.607 50.000 11.43 0.00 0.00 5.52
2328 2866 0.249031 GCCTAATCAAACATGGCGGC 60.249 55.000 0.00 0.00 33.96 6.53
2329 2867 0.385390 GGCCTAATCAAACATGGCGG 59.615 55.000 0.00 0.00 44.07 6.13
2330 2868 1.102154 TGGCCTAATCAAACATGGCG 58.898 50.000 3.32 0.00 44.07 5.69
2331 2869 1.136891 GGTGGCCTAATCAAACATGGC 59.863 52.381 3.32 0.00 42.56 4.40
2332 2870 1.756538 GGGTGGCCTAATCAAACATGG 59.243 52.381 3.32 0.00 0.00 3.66
2333 2871 2.428171 CAGGGTGGCCTAATCAAACATG 59.572 50.000 3.32 0.00 0.00 3.21
2334 2872 2.738743 CAGGGTGGCCTAATCAAACAT 58.261 47.619 3.32 0.00 0.00 2.71
2335 2873 1.890573 GCAGGGTGGCCTAATCAAACA 60.891 52.381 3.32 0.00 0.00 2.83
2336 2874 0.817654 GCAGGGTGGCCTAATCAAAC 59.182 55.000 3.32 0.00 0.00 2.93
2337 2875 0.407528 TGCAGGGTGGCCTAATCAAA 59.592 50.000 3.32 0.00 0.00 2.69
2338 2876 0.034186 CTGCAGGGTGGCCTAATCAA 60.034 55.000 5.57 0.00 0.00 2.57
2339 2877 0.913934 TCTGCAGGGTGGCCTAATCA 60.914 55.000 15.13 0.00 0.00 2.57
2340 2878 0.255890 TTCTGCAGGGTGGCCTAATC 59.744 55.000 15.13 0.00 0.00 1.75
2341 2879 0.034089 GTTCTGCAGGGTGGCCTAAT 60.034 55.000 15.13 0.00 0.00 1.73
2342 2880 1.133809 AGTTCTGCAGGGTGGCCTAA 61.134 55.000 15.13 0.00 0.00 2.69
2343 2881 1.133809 AAGTTCTGCAGGGTGGCCTA 61.134 55.000 15.13 0.00 0.00 3.93
2344 2882 2.011617 AAAGTTCTGCAGGGTGGCCT 62.012 55.000 15.13 0.00 0.00 5.19
2345 2883 1.527433 GAAAGTTCTGCAGGGTGGCC 61.527 60.000 15.13 0.00 0.00 5.36
2346 2884 0.538287 AGAAAGTTCTGCAGGGTGGC 60.538 55.000 15.13 0.00 35.89 5.01
2347 2885 1.986882 AAGAAAGTTCTGCAGGGTGG 58.013 50.000 15.13 0.00 37.65 4.61
2348 2886 2.031682 CGAAAGAAAGTTCTGCAGGGTG 60.032 50.000 15.13 0.00 37.65 4.61
2349 2887 2.222027 CGAAAGAAAGTTCTGCAGGGT 58.778 47.619 15.13 0.00 37.65 4.34
2350 2888 2.222027 ACGAAAGAAAGTTCTGCAGGG 58.778 47.619 15.13 0.00 37.65 4.45
2351 2889 2.224314 GGACGAAAGAAAGTTCTGCAGG 59.776 50.000 15.13 0.00 37.65 4.85
2352 2890 2.224314 GGGACGAAAGAAAGTTCTGCAG 59.776 50.000 7.63 7.63 37.65 4.41
2353 2891 2.158813 AGGGACGAAAGAAAGTTCTGCA 60.159 45.455 0.00 0.00 37.65 4.41
2354 2892 2.224314 CAGGGACGAAAGAAAGTTCTGC 59.776 50.000 0.00 0.00 37.65 4.26
2355 2893 3.467803 ACAGGGACGAAAGAAAGTTCTG 58.532 45.455 0.00 0.00 37.65 3.02
2356 2894 3.840124 ACAGGGACGAAAGAAAGTTCT 57.160 42.857 0.00 0.00 39.74 3.01
2357 2895 5.295045 TGTTTACAGGGACGAAAGAAAGTTC 59.705 40.000 0.00 0.00 0.00 3.01
2358 2896 5.187687 TGTTTACAGGGACGAAAGAAAGTT 58.812 37.500 0.00 0.00 0.00 2.66
2359 2897 4.773013 TGTTTACAGGGACGAAAGAAAGT 58.227 39.130 0.00 0.00 0.00 2.66
2360 2898 5.941948 ATGTTTACAGGGACGAAAGAAAG 57.058 39.130 0.00 0.00 0.00 2.62
2361 2899 5.591067 ACAATGTTTACAGGGACGAAAGAAA 59.409 36.000 0.00 0.00 0.00 2.52
2362 2900 5.008217 CACAATGTTTACAGGGACGAAAGAA 59.992 40.000 0.00 0.00 0.00 2.52
2363 2901 4.513692 CACAATGTTTACAGGGACGAAAGA 59.486 41.667 0.00 0.00 0.00 2.52
2364 2902 4.513692 TCACAATGTTTACAGGGACGAAAG 59.486 41.667 0.00 0.00 0.00 2.62
2365 2903 4.273969 GTCACAATGTTTACAGGGACGAAA 59.726 41.667 0.00 0.00 0.00 3.46
2366 2904 3.810941 GTCACAATGTTTACAGGGACGAA 59.189 43.478 0.00 0.00 0.00 3.85
2367 2905 3.395639 GTCACAATGTTTACAGGGACGA 58.604 45.455 0.00 0.00 0.00 4.20
2368 2906 2.156891 CGTCACAATGTTTACAGGGACG 59.843 50.000 11.00 11.00 40.45 4.79
2369 2907 3.135994 ACGTCACAATGTTTACAGGGAC 58.864 45.455 0.00 0.00 0.00 4.46
2370 2908 3.070446 AGACGTCACAATGTTTACAGGGA 59.930 43.478 19.50 0.00 0.00 4.20
2371 2909 3.399330 AGACGTCACAATGTTTACAGGG 58.601 45.455 19.50 0.00 0.00 4.45
2372 2910 6.533819 TTAAGACGTCACAATGTTTACAGG 57.466 37.500 19.50 0.00 0.00 4.00
2376 2914 9.601971 GCTTTTATTAAGACGTCACAATGTTTA 57.398 29.630 19.50 2.63 0.00 2.01
2377 2915 8.349983 AGCTTTTATTAAGACGTCACAATGTTT 58.650 29.630 19.50 3.68 0.00 2.83
2378 2916 7.871853 AGCTTTTATTAAGACGTCACAATGTT 58.128 30.769 19.50 4.46 0.00 2.71
2379 2917 7.435068 AGCTTTTATTAAGACGTCACAATGT 57.565 32.000 19.50 0.96 0.00 2.71
2380 2918 7.214449 CGAAGCTTTTATTAAGACGTCACAATG 59.786 37.037 19.50 5.74 0.00 2.82
2381 2919 7.234384 CGAAGCTTTTATTAAGACGTCACAAT 58.766 34.615 19.50 17.37 0.00 2.71
2382 2920 6.586751 CGAAGCTTTTATTAAGACGTCACAA 58.413 36.000 19.50 11.23 0.00 3.33
2383 2921 6.148270 CGAAGCTTTTATTAAGACGTCACA 57.852 37.500 19.50 1.06 0.00 3.58
2402 2940 1.497991 TTTGAGACAACCTCGCGAAG 58.502 50.000 11.33 6.75 44.92 3.79
2403 2941 1.942677 TTTTGAGACAACCTCGCGAA 58.057 45.000 11.33 0.00 44.92 4.70
2404 2942 1.942677 TTTTTGAGACAACCTCGCGA 58.057 45.000 9.26 9.26 44.92 5.87
2440 2978 3.516681 GCGTCACATGAAGCATCTATG 57.483 47.619 13.89 0.00 46.36 2.23
2510 3048 4.041762 GGGCATGTCCAACGGGGA 62.042 66.667 12.68 0.00 45.89 4.81
2511 3049 2.204865 TAAGGGCATGTCCAACGGGG 62.205 60.000 20.74 0.00 36.21 5.73
2512 3050 0.106719 ATAAGGGCATGTCCAACGGG 60.107 55.000 20.74 0.00 36.21 5.28
2513 3051 1.134098 AGATAAGGGCATGTCCAACGG 60.134 52.381 20.74 0.00 36.21 4.44
2514 3052 2.332063 AGATAAGGGCATGTCCAACG 57.668 50.000 20.74 0.00 36.21 4.10
2515 3053 4.781934 ACTAAGATAAGGGCATGTCCAAC 58.218 43.478 20.74 6.55 36.21 3.77
2516 3054 6.763715 ATACTAAGATAAGGGCATGTCCAA 57.236 37.500 20.74 6.48 36.21 3.53
2517 3055 7.865530 TTATACTAAGATAAGGGCATGTCCA 57.134 36.000 20.74 0.00 36.21 4.02
2518 3056 9.740710 AAATTATACTAAGATAAGGGCATGTCC 57.259 33.333 8.79 8.79 0.00 4.02
2562 3100 8.306761 CCATCTCAAAATAAGTGCCTTAACTTT 58.693 33.333 0.00 0.00 40.77 2.66
2563 3101 7.669722 TCCATCTCAAAATAAGTGCCTTAACTT 59.330 33.333 0.00 0.00 42.89 2.66
2564 3102 7.175104 TCCATCTCAAAATAAGTGCCTTAACT 58.825 34.615 0.00 0.00 29.35 2.24
2565 3103 7.391148 TCCATCTCAAAATAAGTGCCTTAAC 57.609 36.000 0.00 0.00 29.35 2.01
2566 3104 6.603201 CCTCCATCTCAAAATAAGTGCCTTAA 59.397 38.462 0.00 0.00 29.35 1.85
2567 3105 6.122277 CCTCCATCTCAAAATAAGTGCCTTA 58.878 40.000 0.00 0.00 0.00 2.69
2568 3106 4.952335 CCTCCATCTCAAAATAAGTGCCTT 59.048 41.667 0.00 0.00 0.00 4.35
2569 3107 4.530875 CCTCCATCTCAAAATAAGTGCCT 58.469 43.478 0.00 0.00 0.00 4.75
2570 3108 3.633986 CCCTCCATCTCAAAATAAGTGCC 59.366 47.826 0.00 0.00 0.00 5.01
2571 3109 4.526970 TCCCTCCATCTCAAAATAAGTGC 58.473 43.478 0.00 0.00 0.00 4.40
2572 3110 5.749462 ACTCCCTCCATCTCAAAATAAGTG 58.251 41.667 0.00 0.00 0.00 3.16
2573 3111 6.674419 AGTACTCCCTCCATCTCAAAATAAGT 59.326 38.462 0.00 0.00 0.00 2.24
2586 3124 3.706594 CTGCAAATCTAGTACTCCCTCCA 59.293 47.826 0.00 0.00 0.00 3.86
2591 3129 7.617041 AACATTTCTGCAAATCTAGTACTCC 57.383 36.000 0.00 0.00 28.97 3.85
2710 3251 2.184088 TCTGGGGTCAATTATCCGGA 57.816 50.000 6.61 6.61 32.73 5.14
2855 3400 2.039418 TGATCCCTGGACGATACCTTG 58.961 52.381 0.00 0.00 0.00 3.61
2857 3402 1.063190 TGTGATCCCTGGACGATACCT 60.063 52.381 0.00 0.00 0.00 3.08
2867 3412 4.654091 AGTTTTTGTGTTGTGATCCCTG 57.346 40.909 0.00 0.00 0.00 4.45
2939 3484 1.281419 TATGGATGGTCCCGTGTTGT 58.719 50.000 0.00 0.00 35.03 3.32
2944 3489 1.072331 GCTGATTATGGATGGTCCCGT 59.928 52.381 0.00 0.00 35.03 5.28
2986 3531 0.768221 AGCTCCCAGTCAAGGTCCAA 60.768 55.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.