Multiple sequence alignment - TraesCS5B01G129000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G129000 chr5B 100.000 2456 0 0 1 2456 236282725 236285180 0.000000e+00 4536
1 TraesCS5B01G129000 chr5B 90.637 769 59 7 388 1152 284155706 284156465 0.000000e+00 1009
2 TraesCS5B01G129000 chr5B 89.244 344 26 8 1610 1951 673972153 673971819 1.050000e-113 420
3 TraesCS5B01G129000 chr5B 89.531 277 27 2 1294 1570 673972413 673972139 1.400000e-92 350
4 TraesCS5B01G129000 chr5B 96.500 200 7 0 2020 2219 221837603 221837802 5.060000e-87 331
5 TraesCS5B01G129000 chr6B 93.469 1577 97 4 388 1963 199565838 199567409 0.000000e+00 2337
6 TraesCS5B01G129000 chr6B 91.899 753 51 4 388 1139 169114963 169115706 0.000000e+00 1044
7 TraesCS5B01G129000 chr6B 90.985 721 54 8 1247 1963 417851763 417851050 0.000000e+00 961
8 TraesCS5B01G129000 chr6B 96.980 563 17 0 1107 1669 214170815 214171377 0.000000e+00 946
9 TraesCS5B01G129000 chr6B 95.855 386 16 0 1963 2348 199567280 199567665 2.070000e-175 625
10 TraesCS5B01G129000 chr6B 84.820 527 43 12 1966 2456 417851177 417850652 1.700000e-136 496
11 TraesCS5B01G129000 chr1A 93.629 1444 76 8 528 1963 424757788 424759223 0.000000e+00 2143
12 TraesCS5B01G129000 chr1A 89.415 718 62 6 385 1094 265144343 265145054 0.000000e+00 893
13 TraesCS5B01G129000 chr1A 92.471 425 19 4 1963 2374 424759094 424759518 1.630000e-166 595
14 TraesCS5B01G129000 chr1B 93.744 1055 57 7 914 1966 303996364 303997411 0.000000e+00 1574
15 TraesCS5B01G129000 chr1B 89.861 503 16 7 1965 2432 303997281 303997783 4.490000e-172 614
16 TraesCS5B01G129000 chr1B 84.450 373 37 11 1963 2322 486305700 486306064 5.030000e-92 348
17 TraesCS5B01G129000 chr1B 90.511 137 13 0 2208 2344 253019503 253019639 5.400000e-42 182
18 TraesCS5B01G129000 chr3B 92.696 753 51 2 388 1139 322204386 322205135 0.000000e+00 1083
19 TraesCS5B01G129000 chr3B 91.238 719 49 10 1247 1962 139392466 139393173 0.000000e+00 966
20 TraesCS5B01G129000 chr3B 85.849 530 38 12 1963 2456 139393044 139393572 1.670000e-146 529
21 TraesCS5B01G129000 chr4B 90.649 770 60 6 387 1152 422785933 422785172 0.000000e+00 1013
22 TraesCS5B01G129000 chr4B 89.883 771 65 9 388 1152 96978044 96977281 0.000000e+00 979
23 TraesCS5B01G129000 chr4B 96.020 201 7 1 2020 2219 472484304 472484104 2.360000e-85 326
24 TraesCS5B01G129000 chr4A 91.806 720 47 8 1247 1963 191357210 191357920 0.000000e+00 992
25 TraesCS5B01G129000 chr4A 85.472 530 38 14 1963 2456 191357790 191358316 1.300000e-142 516
26 TraesCS5B01G129000 chr4A 86.022 372 31 8 1966 2324 621702290 621701927 1.780000e-101 379
27 TraesCS5B01G129000 chr7B 89.870 770 68 6 388 1152 258623198 258622434 0.000000e+00 981
28 TraesCS5B01G129000 chr7B 95.812 382 13 3 1586 1967 383666335 383666713 4.490000e-172 614
29 TraesCS5B01G129000 chr7B 94.942 257 13 0 1963 2219 383666580 383666836 1.060000e-108 403
30 TraesCS5B01G129000 chr7D 91.274 722 49 8 1247 1966 61278191 61277482 0.000000e+00 972
31 TraesCS5B01G129000 chr7D 95.373 389 18 0 1 389 392270826 392271214 9.650000e-174 619
32 TraesCS5B01G129000 chr5D 95.630 389 17 0 1 389 373180679 373180291 2.070000e-175 625
33 TraesCS5B01G129000 chr1D 95.630 389 17 0 1 389 191775361 191774973 2.070000e-175 625
34 TraesCS5B01G129000 chr3D 95.373 389 18 0 1 389 27614585 27614973 9.650000e-174 619
35 TraesCS5B01G129000 chr3D 94.192 396 23 0 1 396 442875687 442875292 2.700000e-169 604
36 TraesCS5B01G129000 chr2D 95.373 389 17 1 1 389 425999544 425999931 3.470000e-173 617
37 TraesCS5B01G129000 chr2D 95.116 389 19 0 1 389 286441327 286441715 4.490000e-172 614
38 TraesCS5B01G129000 chr6D 95.325 385 18 0 1 385 440431269 440431653 1.610000e-171 612
39 TraesCS5B01G129000 chr4D 94.859 389 20 0 1 389 438138217 438137829 2.090000e-170 608
40 TraesCS5B01G129000 chr5A 85.027 374 33 11 1963 2322 672725845 672726209 2.320000e-95 359
41 TraesCS5B01G129000 chr7A 78.736 174 33 4 388 559 269283597 269283768 2.000000e-21 113
42 TraesCS5B01G129000 chr2B 83.544 79 13 0 1103 1181 135782549 135782627 9.420000e-10 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G129000 chr5B 236282725 236285180 2455 False 4536.0 4536 100.0000 1 2456 1 chr5B.!!$F2 2455
1 TraesCS5B01G129000 chr5B 284155706 284156465 759 False 1009.0 1009 90.6370 388 1152 1 chr5B.!!$F3 764
2 TraesCS5B01G129000 chr5B 673971819 673972413 594 True 385.0 420 89.3875 1294 1951 2 chr5B.!!$R1 657
3 TraesCS5B01G129000 chr6B 199565838 199567665 1827 False 1481.0 2337 94.6620 388 2348 2 chr6B.!!$F3 1960
4 TraesCS5B01G129000 chr6B 169114963 169115706 743 False 1044.0 1044 91.8990 388 1139 1 chr6B.!!$F1 751
5 TraesCS5B01G129000 chr6B 214170815 214171377 562 False 946.0 946 96.9800 1107 1669 1 chr6B.!!$F2 562
6 TraesCS5B01G129000 chr6B 417850652 417851763 1111 True 728.5 961 87.9025 1247 2456 2 chr6B.!!$R1 1209
7 TraesCS5B01G129000 chr1A 424757788 424759518 1730 False 1369.0 2143 93.0500 528 2374 2 chr1A.!!$F2 1846
8 TraesCS5B01G129000 chr1A 265144343 265145054 711 False 893.0 893 89.4150 385 1094 1 chr1A.!!$F1 709
9 TraesCS5B01G129000 chr1B 303996364 303997783 1419 False 1094.0 1574 91.8025 914 2432 2 chr1B.!!$F3 1518
10 TraesCS5B01G129000 chr3B 322204386 322205135 749 False 1083.0 1083 92.6960 388 1139 1 chr3B.!!$F1 751
11 TraesCS5B01G129000 chr3B 139392466 139393572 1106 False 747.5 966 88.5435 1247 2456 2 chr3B.!!$F2 1209
12 TraesCS5B01G129000 chr4B 422785172 422785933 761 True 1013.0 1013 90.6490 387 1152 1 chr4B.!!$R2 765
13 TraesCS5B01G129000 chr4B 96977281 96978044 763 True 979.0 979 89.8830 388 1152 1 chr4B.!!$R1 764
14 TraesCS5B01G129000 chr4A 191357210 191358316 1106 False 754.0 992 88.6390 1247 2456 2 chr4A.!!$F1 1209
15 TraesCS5B01G129000 chr7B 258622434 258623198 764 True 981.0 981 89.8700 388 1152 1 chr7B.!!$R1 764
16 TraesCS5B01G129000 chr7B 383666335 383666836 501 False 508.5 614 95.3770 1586 2219 2 chr7B.!!$F1 633
17 TraesCS5B01G129000 chr7D 61277482 61278191 709 True 972.0 972 91.2740 1247 1966 1 chr7D.!!$R1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 420 0.108424 CAGAAGCTAGCCAACTCGCT 60.108 55.0 12.13 0.0 46.22 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2008 0.89832 TCAGCTGGTAGGCTTCTCAC 59.102 55.0 15.13 0.0 41.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.788325 GTGATTAACACCCAAAGAGTACTAAT 57.212 34.615 0.00 0.00 43.05 1.73
29 30 8.665685 GTGATTAACACCCAAAGAGTACTAATG 58.334 37.037 0.00 0.00 43.05 1.90
30 31 8.380099 TGATTAACACCCAAAGAGTACTAATGT 58.620 33.333 0.00 0.00 0.00 2.71
31 32 7.972832 TTAACACCCAAAGAGTACTAATGTG 57.027 36.000 0.00 0.89 0.00 3.21
32 33 5.562298 ACACCCAAAGAGTACTAATGTGT 57.438 39.130 0.00 1.53 0.00 3.72
33 34 5.305585 ACACCCAAAGAGTACTAATGTGTG 58.694 41.667 12.75 12.75 32.40 3.82
34 35 5.071250 ACACCCAAAGAGTACTAATGTGTGA 59.929 40.000 18.04 0.00 31.47 3.58
35 36 6.173339 CACCCAAAGAGTACTAATGTGTGAT 58.827 40.000 10.23 0.00 29.88 3.06
36 37 6.313905 CACCCAAAGAGTACTAATGTGTGATC 59.686 42.308 10.23 0.00 29.88 2.92
37 38 6.013725 ACCCAAAGAGTACTAATGTGTGATCA 60.014 38.462 0.00 0.00 0.00 2.92
38 39 7.050377 CCCAAAGAGTACTAATGTGTGATCAT 58.950 38.462 0.00 0.00 0.00 2.45
39 40 7.011763 CCCAAAGAGTACTAATGTGTGATCATG 59.988 40.741 0.00 0.00 0.00 3.07
40 41 7.550551 CCAAAGAGTACTAATGTGTGATCATGT 59.449 37.037 0.00 0.00 0.00 3.21
41 42 8.939929 CAAAGAGTACTAATGTGTGATCATGTT 58.060 33.333 0.00 0.00 0.00 2.71
42 43 9.507329 AAAGAGTACTAATGTGTGATCATGTTT 57.493 29.630 0.00 0.00 0.00 2.83
43 44 9.507329 AAGAGTACTAATGTGTGATCATGTTTT 57.493 29.630 0.00 0.00 0.00 2.43
46 47 9.944376 AGTACTAATGTGTGATCATGTTTTACT 57.056 29.630 0.00 0.00 0.00 2.24
49 50 9.066892 ACTAATGTGTGATCATGTTTTACTTGT 57.933 29.630 0.00 0.00 0.00 3.16
50 51 9.333497 CTAATGTGTGATCATGTTTTACTTGTG 57.667 33.333 0.00 0.00 0.00 3.33
51 52 6.934048 TGTGTGATCATGTTTTACTTGTGA 57.066 33.333 0.00 0.00 0.00 3.58
52 53 6.958255 TGTGTGATCATGTTTTACTTGTGAG 58.042 36.000 0.00 0.00 0.00 3.51
53 54 6.765512 TGTGTGATCATGTTTTACTTGTGAGA 59.234 34.615 0.00 0.00 0.00 3.27
54 55 7.041848 TGTGTGATCATGTTTTACTTGTGAGAG 60.042 37.037 0.00 0.00 0.00 3.20
55 56 7.171508 GTGTGATCATGTTTTACTTGTGAGAGA 59.828 37.037 0.00 0.00 0.00 3.10
56 57 7.714813 TGTGATCATGTTTTACTTGTGAGAGAA 59.285 33.333 0.00 0.00 0.00 2.87
57 58 8.226448 GTGATCATGTTTTACTTGTGAGAGAAG 58.774 37.037 0.00 0.00 0.00 2.85
58 59 7.933577 TGATCATGTTTTACTTGTGAGAGAAGT 59.066 33.333 0.00 0.00 37.43 3.01
59 60 8.682936 ATCATGTTTTACTTGTGAGAGAAGTT 57.317 30.769 0.00 0.00 35.30 2.66
60 61 8.506168 TCATGTTTTACTTGTGAGAGAAGTTT 57.494 30.769 0.00 0.00 35.30 2.66
61 62 9.607988 TCATGTTTTACTTGTGAGAGAAGTTTA 57.392 29.630 0.00 0.00 35.30 2.01
62 63 9.869844 CATGTTTTACTTGTGAGAGAAGTTTAG 57.130 33.333 0.00 0.00 35.30 1.85
63 64 9.614792 ATGTTTTACTTGTGAGAGAAGTTTAGT 57.385 29.630 0.00 0.00 35.30 2.24
64 65 9.095065 TGTTTTACTTGTGAGAGAAGTTTAGTC 57.905 33.333 0.00 0.00 35.30 2.59
65 66 9.095065 GTTTTACTTGTGAGAGAAGTTTAGTCA 57.905 33.333 0.00 0.00 35.30 3.41
66 67 9.661563 TTTTACTTGTGAGAGAAGTTTAGTCAA 57.338 29.630 0.00 0.00 35.30 3.18
67 68 8.644318 TTACTTGTGAGAGAAGTTTAGTCAAC 57.356 34.615 0.00 0.00 35.30 3.18
68 69 5.749109 ACTTGTGAGAGAAGTTTAGTCAACG 59.251 40.000 0.00 0.00 40.75 4.10
69 70 4.617959 TGTGAGAGAAGTTTAGTCAACGG 58.382 43.478 0.00 0.00 40.75 4.44
70 71 3.988517 GTGAGAGAAGTTTAGTCAACGGG 59.011 47.826 0.00 0.00 40.75 5.28
71 72 3.640029 TGAGAGAAGTTTAGTCAACGGGT 59.360 43.478 0.00 0.00 40.75 5.28
72 73 4.236147 GAGAGAAGTTTAGTCAACGGGTC 58.764 47.826 0.00 0.00 40.75 4.46
73 74 3.896272 AGAGAAGTTTAGTCAACGGGTCT 59.104 43.478 0.00 0.00 40.75 3.85
74 75 3.988517 GAGAAGTTTAGTCAACGGGTCTG 59.011 47.826 0.00 0.00 40.75 3.51
75 76 2.165319 AGTTTAGTCAACGGGTCTGC 57.835 50.000 0.00 0.00 40.75 4.26
76 77 1.154197 GTTTAGTCAACGGGTCTGCC 58.846 55.000 0.00 0.00 0.00 4.85
77 78 0.759959 TTTAGTCAACGGGTCTGCCA 59.240 50.000 0.00 0.00 36.17 4.92
78 79 0.759959 TTAGTCAACGGGTCTGCCAA 59.240 50.000 0.00 0.00 36.17 4.52
79 80 0.759959 TAGTCAACGGGTCTGCCAAA 59.240 50.000 0.00 0.00 36.17 3.28
80 81 0.110486 AGTCAACGGGTCTGCCAAAT 59.890 50.000 0.00 0.00 36.17 2.32
81 82 0.958822 GTCAACGGGTCTGCCAAATT 59.041 50.000 0.00 0.00 36.17 1.82
82 83 1.068541 GTCAACGGGTCTGCCAAATTC 60.069 52.381 0.00 0.00 36.17 2.17
83 84 0.958091 CAACGGGTCTGCCAAATTCA 59.042 50.000 0.00 0.00 36.17 2.57
84 85 1.068333 CAACGGGTCTGCCAAATTCAG 60.068 52.381 0.00 0.00 36.17 3.02
85 86 0.400213 ACGGGTCTGCCAAATTCAGA 59.600 50.000 0.00 0.00 38.16 3.27
86 87 1.004745 ACGGGTCTGCCAAATTCAGAT 59.995 47.619 0.00 0.00 41.93 2.90
87 88 1.672881 CGGGTCTGCCAAATTCAGATC 59.327 52.381 0.00 0.00 41.93 2.75
89 90 2.726821 GGTCTGCCAAATTCAGATCCA 58.273 47.619 0.00 0.00 41.93 3.41
90 91 3.294214 GGTCTGCCAAATTCAGATCCAT 58.706 45.455 0.00 0.00 41.93 3.41
91 92 4.464008 GGTCTGCCAAATTCAGATCCATA 58.536 43.478 0.00 0.00 41.93 2.74
92 93 5.075493 GGTCTGCCAAATTCAGATCCATAT 58.925 41.667 0.00 0.00 41.93 1.78
93 94 5.048224 GGTCTGCCAAATTCAGATCCATATG 60.048 44.000 0.00 0.00 41.93 1.78
94 95 5.533903 GTCTGCCAAATTCAGATCCATATGT 59.466 40.000 1.24 0.00 41.93 2.29
95 96 6.712095 GTCTGCCAAATTCAGATCCATATGTA 59.288 38.462 1.24 0.00 41.93 2.29
96 97 7.392673 GTCTGCCAAATTCAGATCCATATGTAT 59.607 37.037 1.24 0.00 41.93 2.29
97 98 7.946219 TCTGCCAAATTCAGATCCATATGTATT 59.054 33.333 1.24 0.00 35.81 1.89
98 99 8.481492 TGCCAAATTCAGATCCATATGTATTT 57.519 30.769 1.24 0.00 31.96 1.40
99 100 8.926374 TGCCAAATTCAGATCCATATGTATTTT 58.074 29.630 1.24 0.00 30.23 1.82
100 101 9.199982 GCCAAATTCAGATCCATATGTATTTTG 57.800 33.333 1.24 0.00 30.23 2.44
101 102 9.199982 CCAAATTCAGATCCATATGTATTTTGC 57.800 33.333 1.24 0.00 30.23 3.68
102 103 9.752961 CAAATTCAGATCCATATGTATTTTGCA 57.247 29.630 1.24 0.00 30.23 4.08
122 123 8.464770 TTTGCAAATTTCTATGTCTACAATGC 57.535 30.769 8.05 0.00 0.00 3.56
123 124 7.395190 TGCAAATTTCTATGTCTACAATGCT 57.605 32.000 0.00 0.00 0.00 3.79
124 125 7.475015 TGCAAATTTCTATGTCTACAATGCTC 58.525 34.615 0.00 0.00 0.00 4.26
125 126 7.337689 TGCAAATTTCTATGTCTACAATGCTCT 59.662 33.333 0.00 0.00 0.00 4.09
126 127 7.642978 GCAAATTTCTATGTCTACAATGCTCTG 59.357 37.037 0.00 0.00 0.00 3.35
127 128 8.671921 CAAATTTCTATGTCTACAATGCTCTGT 58.328 33.333 0.00 0.00 0.00 3.41
128 129 9.890629 AAATTTCTATGTCTACAATGCTCTGTA 57.109 29.630 0.00 0.00 0.00 2.74
129 130 8.879342 ATTTCTATGTCTACAATGCTCTGTAC 57.121 34.615 0.00 0.00 0.00 2.90
130 131 6.061231 TCTATGTCTACAATGCTCTGTACG 57.939 41.667 0.00 0.00 0.00 3.67
131 132 3.503827 TGTCTACAATGCTCTGTACGG 57.496 47.619 0.00 0.00 0.00 4.02
132 133 3.086282 TGTCTACAATGCTCTGTACGGA 58.914 45.455 3.91 3.91 0.00 4.69
133 134 3.128764 TGTCTACAATGCTCTGTACGGAG 59.871 47.826 24.89 24.89 36.50 4.63
143 144 2.866762 CTCTGTACGGAGCCATTTTAGC 59.133 50.000 18.57 0.00 0.00 3.09
144 145 2.500098 TCTGTACGGAGCCATTTTAGCT 59.500 45.455 0.00 0.00 45.23 3.32
145 146 3.702548 TCTGTACGGAGCCATTTTAGCTA 59.297 43.478 0.00 0.00 41.75 3.32
146 147 4.160814 TCTGTACGGAGCCATTTTAGCTAA 59.839 41.667 0.86 0.86 41.75 3.09
147 148 5.031066 TGTACGGAGCCATTTTAGCTAAT 57.969 39.130 7.08 0.00 41.75 1.73
148 149 5.433526 TGTACGGAGCCATTTTAGCTAATT 58.566 37.500 7.08 0.00 41.75 1.40
149 150 4.900635 ACGGAGCCATTTTAGCTAATTG 57.099 40.909 7.08 8.31 41.75 2.32
150 151 3.066760 ACGGAGCCATTTTAGCTAATTGC 59.933 43.478 7.08 7.82 41.75 3.56
202 203 5.830912 GACTTAGAGTCATCTGGATCAGTG 58.169 45.833 3.33 0.00 44.45 3.66
203 204 5.268387 ACTTAGAGTCATCTGGATCAGTGT 58.732 41.667 0.00 0.00 36.96 3.55
204 205 5.359576 ACTTAGAGTCATCTGGATCAGTGTC 59.640 44.000 0.00 0.00 36.96 3.67
205 206 3.706183 AGAGTCATCTGGATCAGTGTCA 58.294 45.455 0.00 0.00 33.30 3.58
206 207 4.092279 AGAGTCATCTGGATCAGTGTCAA 58.908 43.478 0.00 0.00 33.30 3.18
207 208 4.529769 AGAGTCATCTGGATCAGTGTCAAA 59.470 41.667 0.00 0.00 33.30 2.69
208 209 5.012458 AGAGTCATCTGGATCAGTGTCAAAA 59.988 40.000 0.00 0.00 33.30 2.44
209 210 4.999950 AGTCATCTGGATCAGTGTCAAAAC 59.000 41.667 0.00 0.00 32.61 2.43
210 211 4.999950 GTCATCTGGATCAGTGTCAAAACT 59.000 41.667 0.00 0.00 32.61 2.66
211 212 5.471456 GTCATCTGGATCAGTGTCAAAACTT 59.529 40.000 0.00 0.00 32.61 2.66
212 213 5.471116 TCATCTGGATCAGTGTCAAAACTTG 59.529 40.000 0.00 0.00 32.61 3.16
213 214 3.565482 TCTGGATCAGTGTCAAAACTTGC 59.435 43.478 0.00 0.00 32.61 4.01
214 215 3.286353 TGGATCAGTGTCAAAACTTGCA 58.714 40.909 0.00 0.00 0.00 4.08
215 216 3.890756 TGGATCAGTGTCAAAACTTGCAT 59.109 39.130 0.00 0.00 0.00 3.96
216 217 4.022935 TGGATCAGTGTCAAAACTTGCATC 60.023 41.667 0.00 0.00 0.00 3.91
217 218 3.607422 TCAGTGTCAAAACTTGCATCG 57.393 42.857 0.00 0.00 0.00 3.84
218 219 3.202097 TCAGTGTCAAAACTTGCATCGA 58.798 40.909 0.00 0.00 0.00 3.59
219 220 3.814842 TCAGTGTCAAAACTTGCATCGAT 59.185 39.130 0.00 0.00 0.00 3.59
220 221 3.910170 CAGTGTCAAAACTTGCATCGATG 59.090 43.478 21.27 21.27 0.00 3.84
221 222 3.565482 AGTGTCAAAACTTGCATCGATGT 59.435 39.130 25.47 3.76 0.00 3.06
222 223 4.754618 AGTGTCAAAACTTGCATCGATGTA 59.245 37.500 25.47 19.51 0.00 2.29
223 224 5.238432 AGTGTCAAAACTTGCATCGATGTAA 59.762 36.000 24.53 24.53 0.00 2.41
224 225 5.339611 GTGTCAAAACTTGCATCGATGTAAC 59.660 40.000 22.80 13.60 0.00 2.50
225 226 4.851558 GTCAAAACTTGCATCGATGTAACC 59.148 41.667 22.80 9.07 0.00 2.85
226 227 4.083003 TCAAAACTTGCATCGATGTAACCC 60.083 41.667 22.80 8.71 0.00 4.11
227 228 3.350219 AACTTGCATCGATGTAACCCT 57.650 42.857 22.80 8.99 0.00 4.34
228 229 3.350219 ACTTGCATCGATGTAACCCTT 57.650 42.857 22.80 6.89 0.00 3.95
229 230 3.686016 ACTTGCATCGATGTAACCCTTT 58.314 40.909 22.80 4.69 0.00 3.11
230 231 4.839121 ACTTGCATCGATGTAACCCTTTA 58.161 39.130 22.80 3.47 0.00 1.85
231 232 4.634443 ACTTGCATCGATGTAACCCTTTAC 59.366 41.667 22.80 5.26 38.51 2.01
232 233 3.191669 TGCATCGATGTAACCCTTTACG 58.808 45.455 25.47 0.00 40.61 3.18
233 234 3.119065 TGCATCGATGTAACCCTTTACGA 60.119 43.478 25.47 0.00 40.61 3.43
234 235 3.244579 GCATCGATGTAACCCTTTACGAC 59.755 47.826 25.47 0.96 40.61 4.34
235 236 3.135414 TCGATGTAACCCTTTACGACG 57.865 47.619 0.00 0.00 40.61 5.12
236 237 2.746904 TCGATGTAACCCTTTACGACGA 59.253 45.455 0.00 9.89 41.49 4.20
237 238 3.190327 TCGATGTAACCCTTTACGACGAA 59.810 43.478 0.00 0.00 41.17 3.85
238 239 3.301642 CGATGTAACCCTTTACGACGAAC 59.698 47.826 0.00 0.00 40.61 3.95
239 240 3.025287 TGTAACCCTTTACGACGAACC 57.975 47.619 0.00 0.00 40.61 3.62
240 241 2.627699 TGTAACCCTTTACGACGAACCT 59.372 45.455 0.00 0.00 40.61 3.50
241 242 2.916702 AACCCTTTACGACGAACCTT 57.083 45.000 0.00 0.00 0.00 3.50
242 243 2.916702 ACCCTTTACGACGAACCTTT 57.083 45.000 0.00 0.00 0.00 3.11
243 244 3.198409 ACCCTTTACGACGAACCTTTT 57.802 42.857 0.00 0.00 0.00 2.27
244 245 2.874086 ACCCTTTACGACGAACCTTTTG 59.126 45.455 0.00 0.00 0.00 2.44
245 246 2.874086 CCCTTTACGACGAACCTTTTGT 59.126 45.455 0.00 0.00 0.00 2.83
246 247 3.059393 CCCTTTACGACGAACCTTTTGTC 60.059 47.826 0.00 0.00 40.07 3.18
247 248 3.556775 CCTTTACGACGAACCTTTTGTCA 59.443 43.478 0.00 0.00 42.96 3.58
248 249 4.511734 CTTTACGACGAACCTTTTGTCAC 58.488 43.478 0.00 0.00 42.96 3.67
249 250 1.292992 ACGACGAACCTTTTGTCACC 58.707 50.000 0.00 0.00 42.96 4.02
250 251 1.134610 ACGACGAACCTTTTGTCACCT 60.135 47.619 0.00 0.00 42.96 4.00
251 252 1.525619 CGACGAACCTTTTGTCACCTC 59.474 52.381 7.01 0.00 42.96 3.85
252 253 1.871676 GACGAACCTTTTGTCACCTCC 59.128 52.381 0.00 0.00 42.48 4.30
253 254 1.210967 ACGAACCTTTTGTCACCTCCA 59.789 47.619 0.00 0.00 0.00 3.86
254 255 2.158667 ACGAACCTTTTGTCACCTCCAT 60.159 45.455 0.00 0.00 0.00 3.41
255 256 3.071892 ACGAACCTTTTGTCACCTCCATA 59.928 43.478 0.00 0.00 0.00 2.74
256 257 4.069304 CGAACCTTTTGTCACCTCCATAA 58.931 43.478 0.00 0.00 0.00 1.90
257 258 4.700213 CGAACCTTTTGTCACCTCCATAAT 59.300 41.667 0.00 0.00 0.00 1.28
258 259 5.163754 CGAACCTTTTGTCACCTCCATAATC 60.164 44.000 0.00 0.00 0.00 1.75
259 260 4.261801 ACCTTTTGTCACCTCCATAATCG 58.738 43.478 0.00 0.00 0.00 3.34
260 261 4.019681 ACCTTTTGTCACCTCCATAATCGA 60.020 41.667 0.00 0.00 0.00 3.59
261 262 4.572389 CCTTTTGTCACCTCCATAATCGAG 59.428 45.833 0.00 0.00 0.00 4.04
262 263 5.414789 TTTTGTCACCTCCATAATCGAGA 57.585 39.130 0.00 0.00 0.00 4.04
263 264 5.414789 TTTGTCACCTCCATAATCGAGAA 57.585 39.130 0.00 0.00 0.00 2.87
264 265 5.414789 TTGTCACCTCCATAATCGAGAAA 57.585 39.130 0.00 0.00 0.00 2.52
265 266 4.755411 TGTCACCTCCATAATCGAGAAAC 58.245 43.478 0.00 0.00 0.00 2.78
266 267 4.221924 TGTCACCTCCATAATCGAGAAACA 59.778 41.667 0.00 0.00 0.00 2.83
267 268 5.104941 TGTCACCTCCATAATCGAGAAACAT 60.105 40.000 0.00 0.00 0.00 2.71
268 269 6.097696 TGTCACCTCCATAATCGAGAAACATA 59.902 38.462 0.00 0.00 0.00 2.29
269 270 7.155328 GTCACCTCCATAATCGAGAAACATAT 58.845 38.462 0.00 0.00 0.00 1.78
270 271 7.329717 GTCACCTCCATAATCGAGAAACATATC 59.670 40.741 0.00 0.00 0.00 1.63
271 272 7.233553 TCACCTCCATAATCGAGAAACATATCT 59.766 37.037 0.00 0.00 0.00 1.98
272 273 7.875041 CACCTCCATAATCGAGAAACATATCTT 59.125 37.037 0.00 0.00 0.00 2.40
273 274 8.432805 ACCTCCATAATCGAGAAACATATCTTT 58.567 33.333 0.00 0.00 0.00 2.52
274 275 9.929180 CCTCCATAATCGAGAAACATATCTTTA 57.071 33.333 0.00 0.00 0.00 1.85
281 282 8.668510 ATCGAGAAACATATCTTTATTGCACT 57.331 30.769 0.00 0.00 0.00 4.40
282 283 9.764363 ATCGAGAAACATATCTTTATTGCACTA 57.236 29.630 0.00 0.00 0.00 2.74
283 284 9.594478 TCGAGAAACATATCTTTATTGCACTAA 57.406 29.630 0.00 0.00 0.00 2.24
284 285 9.855361 CGAGAAACATATCTTTATTGCACTAAG 57.145 33.333 0.00 0.00 0.00 2.18
286 287 9.905713 AGAAACATATCTTTATTGCACTAAGGA 57.094 29.630 10.40 10.40 0.00 3.36
298 299 5.811399 TGCACTAAGGATAATTTTGACCG 57.189 39.130 0.00 0.00 0.00 4.79
299 300 4.095782 TGCACTAAGGATAATTTTGACCGC 59.904 41.667 0.00 0.00 0.00 5.68
300 301 4.335594 GCACTAAGGATAATTTTGACCGCT 59.664 41.667 0.00 0.00 0.00 5.52
301 302 5.730568 GCACTAAGGATAATTTTGACCGCTG 60.731 44.000 0.00 0.00 0.00 5.18
302 303 5.354234 CACTAAGGATAATTTTGACCGCTGT 59.646 40.000 0.00 0.00 0.00 4.40
303 304 5.944007 ACTAAGGATAATTTTGACCGCTGTT 59.056 36.000 0.00 0.00 0.00 3.16
304 305 4.965119 AGGATAATTTTGACCGCTGTTC 57.035 40.909 0.00 0.00 0.00 3.18
305 306 4.331968 AGGATAATTTTGACCGCTGTTCA 58.668 39.130 0.00 0.00 0.00 3.18
306 307 4.396166 AGGATAATTTTGACCGCTGTTCAG 59.604 41.667 0.00 0.00 0.00 3.02
307 308 4.156008 GGATAATTTTGACCGCTGTTCAGT 59.844 41.667 1.78 0.00 0.00 3.41
308 309 3.354089 AATTTTGACCGCTGTTCAGTG 57.646 42.857 6.41 6.41 0.00 3.66
309 310 2.031258 TTTTGACCGCTGTTCAGTGA 57.969 45.000 13.92 0.00 0.00 3.41
310 311 2.254546 TTTGACCGCTGTTCAGTGAT 57.745 45.000 13.92 0.00 0.00 3.06
311 312 1.795768 TTGACCGCTGTTCAGTGATC 58.204 50.000 13.92 7.74 0.00 2.92
312 313 0.969149 TGACCGCTGTTCAGTGATCT 59.031 50.000 13.92 0.00 0.00 2.75
313 314 2.167662 TGACCGCTGTTCAGTGATCTA 58.832 47.619 13.92 0.00 0.00 1.98
314 315 2.094700 TGACCGCTGTTCAGTGATCTAC 60.095 50.000 13.92 0.00 0.00 2.59
315 316 2.164624 GACCGCTGTTCAGTGATCTACT 59.835 50.000 13.92 0.00 41.36 2.57
316 317 2.164624 ACCGCTGTTCAGTGATCTACTC 59.835 50.000 13.92 0.00 37.60 2.59
317 318 2.425312 CCGCTGTTCAGTGATCTACTCT 59.575 50.000 13.92 0.00 37.60 3.24
318 319 3.119316 CCGCTGTTCAGTGATCTACTCTT 60.119 47.826 13.92 0.00 37.60 2.85
319 320 4.096532 CCGCTGTTCAGTGATCTACTCTTA 59.903 45.833 13.92 0.00 37.60 2.10
320 321 5.270083 CGCTGTTCAGTGATCTACTCTTAG 58.730 45.833 7.50 0.00 37.60 2.18
321 322 5.065346 CGCTGTTCAGTGATCTACTCTTAGA 59.935 44.000 7.50 0.00 37.60 2.10
322 323 6.238621 CGCTGTTCAGTGATCTACTCTTAGAT 60.239 42.308 7.50 0.00 46.17 1.98
336 337 9.781633 TCTACTCTTAGATCACTATTGTACTCC 57.218 37.037 0.00 0.00 28.60 3.85
337 338 7.826918 ACTCTTAGATCACTATTGTACTCCC 57.173 40.000 0.00 0.00 0.00 4.30
338 339 7.588169 ACTCTTAGATCACTATTGTACTCCCT 58.412 38.462 0.00 0.00 0.00 4.20
339 340 8.062536 ACTCTTAGATCACTATTGTACTCCCTT 58.937 37.037 0.00 0.00 0.00 3.95
340 341 8.239038 TCTTAGATCACTATTGTACTCCCTTG 57.761 38.462 0.00 0.00 0.00 3.61
341 342 5.283457 AGATCACTATTGTACTCCCTTGC 57.717 43.478 0.00 0.00 0.00 4.01
342 343 3.906720 TCACTATTGTACTCCCTTGCC 57.093 47.619 0.00 0.00 0.00 4.52
343 344 3.178046 TCACTATTGTACTCCCTTGCCA 58.822 45.455 0.00 0.00 0.00 4.92
344 345 3.585289 TCACTATTGTACTCCCTTGCCAA 59.415 43.478 0.00 0.00 0.00 4.52
345 346 4.042311 TCACTATTGTACTCCCTTGCCAAA 59.958 41.667 0.00 0.00 0.00 3.28
346 347 4.156008 CACTATTGTACTCCCTTGCCAAAC 59.844 45.833 0.00 0.00 0.00 2.93
347 348 3.525800 ATTGTACTCCCTTGCCAAACT 57.474 42.857 0.00 0.00 0.00 2.66
348 349 2.561478 TGTACTCCCTTGCCAAACTC 57.439 50.000 0.00 0.00 0.00 3.01
349 350 1.771854 TGTACTCCCTTGCCAAACTCA 59.228 47.619 0.00 0.00 0.00 3.41
350 351 2.224523 TGTACTCCCTTGCCAAACTCAG 60.225 50.000 0.00 0.00 0.00 3.35
351 352 0.846693 ACTCCCTTGCCAAACTCAGT 59.153 50.000 0.00 0.00 0.00 3.41
352 353 1.242076 CTCCCTTGCCAAACTCAGTG 58.758 55.000 0.00 0.00 0.00 3.66
353 354 0.550914 TCCCTTGCCAAACTCAGTGT 59.449 50.000 0.00 0.00 0.00 3.55
354 355 1.771854 TCCCTTGCCAAACTCAGTGTA 59.228 47.619 0.00 0.00 0.00 2.90
355 356 2.154462 CCCTTGCCAAACTCAGTGTAG 58.846 52.381 0.00 0.00 0.00 2.74
356 357 2.154462 CCTTGCCAAACTCAGTGTAGG 58.846 52.381 0.00 0.00 0.00 3.18
357 358 2.154462 CTTGCCAAACTCAGTGTAGGG 58.846 52.381 0.00 0.00 0.00 3.53
358 359 1.136828 TGCCAAACTCAGTGTAGGGT 58.863 50.000 0.00 0.00 0.00 4.34
359 360 2.331166 TGCCAAACTCAGTGTAGGGTA 58.669 47.619 0.00 0.00 0.00 3.69
360 361 2.910319 TGCCAAACTCAGTGTAGGGTAT 59.090 45.455 0.00 0.00 0.00 2.73
361 362 3.270877 GCCAAACTCAGTGTAGGGTATG 58.729 50.000 0.00 0.00 0.00 2.39
362 363 3.270877 CCAAACTCAGTGTAGGGTATGC 58.729 50.000 0.00 0.00 0.00 3.14
363 364 3.307410 CCAAACTCAGTGTAGGGTATGCA 60.307 47.826 0.00 0.00 0.00 3.96
364 365 4.323417 CAAACTCAGTGTAGGGTATGCAA 58.677 43.478 0.00 0.00 0.00 4.08
365 366 4.844349 AACTCAGTGTAGGGTATGCAAT 57.156 40.909 0.00 0.00 0.00 3.56
366 367 5.950544 AACTCAGTGTAGGGTATGCAATA 57.049 39.130 0.00 0.00 0.00 1.90
367 368 5.537300 ACTCAGTGTAGGGTATGCAATAG 57.463 43.478 0.00 0.00 0.00 1.73
368 369 5.208890 ACTCAGTGTAGGGTATGCAATAGA 58.791 41.667 0.00 0.00 0.00 1.98
369 370 5.841237 ACTCAGTGTAGGGTATGCAATAGAT 59.159 40.000 0.00 0.00 0.00 1.98
370 371 6.015010 ACTCAGTGTAGGGTATGCAATAGATC 60.015 42.308 0.00 0.00 0.00 2.75
371 372 6.077993 TCAGTGTAGGGTATGCAATAGATCT 58.922 40.000 0.00 0.00 0.00 2.75
372 373 6.015095 TCAGTGTAGGGTATGCAATAGATCTG 60.015 42.308 5.18 0.00 0.00 2.90
373 374 6.015095 CAGTGTAGGGTATGCAATAGATCTGA 60.015 42.308 5.18 0.00 0.00 3.27
374 375 6.728164 AGTGTAGGGTATGCAATAGATCTGAT 59.272 38.462 5.18 0.00 0.00 2.90
375 376 7.895962 AGTGTAGGGTATGCAATAGATCTGATA 59.104 37.037 5.18 0.00 0.00 2.15
376 377 7.976734 GTGTAGGGTATGCAATAGATCTGATAC 59.023 40.741 5.18 4.23 0.00 2.24
377 378 7.673926 TGTAGGGTATGCAATAGATCTGATACA 59.326 37.037 5.18 0.00 0.00 2.29
378 379 6.940739 AGGGTATGCAATAGATCTGATACAC 58.059 40.000 5.18 5.36 0.00 2.90
379 380 6.498303 AGGGTATGCAATAGATCTGATACACA 59.502 38.462 5.18 0.00 0.00 3.72
380 381 7.181665 AGGGTATGCAATAGATCTGATACACAT 59.818 37.037 5.18 4.49 0.00 3.21
381 382 7.493971 GGGTATGCAATAGATCTGATACACATC 59.506 40.741 5.18 0.00 0.00 3.06
382 383 8.037166 GGTATGCAATAGATCTGATACACATCA 58.963 37.037 5.18 0.00 38.90 3.07
383 384 9.597170 GTATGCAATAGATCTGATACACATCAT 57.403 33.333 5.18 0.00 40.40 2.45
419 420 0.108424 CAGAAGCTAGCCAACTCGCT 60.108 55.000 12.13 0.00 46.22 4.93
420 421 0.174617 AGAAGCTAGCCAACTCGCTC 59.825 55.000 12.13 0.00 43.67 5.03
436 437 1.630126 GCTCCCAGAATGCTCCCTCA 61.630 60.000 0.00 0.00 31.97 3.86
441 442 2.158505 CCCAGAATGCTCCCTCAATCAT 60.159 50.000 0.00 0.00 31.97 2.45
453 454 3.118629 CCCTCAATCATCTCCTTCGTTGA 60.119 47.826 0.00 0.00 0.00 3.18
459 460 1.202582 CATCTCCTTCGTTGACCGTCT 59.797 52.381 0.00 0.00 37.94 4.18
465 466 2.422479 CCTTCGTTGACCGTCTGATCTA 59.578 50.000 0.00 0.00 37.94 1.98
485 487 1.373497 CTTCTGGCGCGTCTGAACT 60.373 57.895 26.13 0.00 0.00 3.01
498 500 3.428180 CGTCTGAACTGTCGGATCTTCAT 60.428 47.826 0.00 0.00 41.29 2.57
521 523 7.665559 TCATCTGCAGTCAAACCTAATTTTACT 59.334 33.333 14.67 0.00 35.52 2.24
529 531 7.283807 AGTCAAACCTAATTTTACTTCACGGTT 59.716 33.333 0.00 0.00 31.91 4.44
685 695 1.533753 CACCCCAGCCACCAAACAT 60.534 57.895 0.00 0.00 0.00 2.71
875 885 1.218316 GCCGTCGGAGAACAGGATT 59.782 57.895 17.49 0.00 39.69 3.01
924 934 2.499685 GGATCTAAGGCGTGCGGT 59.500 61.111 0.00 0.00 0.00 5.68
981 991 2.212327 GACCACATGGATCGGTCCT 58.788 57.895 17.40 0.00 45.32 3.85
995 1005 0.823460 GGTCCTTGCAGGAGAGAGAG 59.177 60.000 0.00 0.00 46.90 3.20
996 1006 1.618345 GGTCCTTGCAGGAGAGAGAGA 60.618 57.143 0.00 0.00 46.90 3.10
997 1007 1.750778 GTCCTTGCAGGAGAGAGAGAG 59.249 57.143 0.00 0.00 46.90 3.20
1003 1013 1.610522 GCAGGAGAGAGAGAGAGATGC 59.389 57.143 0.00 0.00 0.00 3.91
1019 1029 2.158475 AGATGCGAGAGAGGGAGAGAAT 60.158 50.000 0.00 0.00 0.00 2.40
1157 1177 3.392616 ACTTCTCCACTGCCTAATATGGG 59.607 47.826 0.00 0.00 32.73 4.00
1243 1263 7.949006 GGTAATCTCTATCTGGTTACCCTTCTA 59.051 40.741 0.00 0.00 38.75 2.10
1292 1312 3.523157 TCCAGTGTGTGATCATATTGGGT 59.477 43.478 15.56 0.00 40.82 4.51
1478 1500 3.560025 CCATGGTGAGTTTGAGGCTTACT 60.560 47.826 2.57 0.00 0.00 2.24
1563 1585 8.306761 CAGGAATACAAAGGAAGCTACAAAATT 58.693 33.333 0.00 0.00 0.00 1.82
1625 1647 6.356556 TCTGATTGTACCCAAATGTGATAGG 58.643 40.000 0.00 0.00 33.44 2.57
1674 1696 5.408604 CGAAGTTGTAGTGGCTAAACAAGAT 59.591 40.000 0.20 0.00 34.01 2.40
1774 1797 0.107165 GCGCCCTACCTCCTGAATTT 60.107 55.000 0.00 0.00 0.00 1.82
1788 1811 7.092668 ACCTCCTGAATTTAATAGTGAGAAGCT 60.093 37.037 0.00 0.00 0.00 3.74
1951 1976 7.050377 AGGATGTATGCATATATGTTACTGGC 58.950 38.462 19.40 3.83 35.07 4.85
1952 1977 7.050377 GGATGTATGCATATATGTTACTGGCT 58.950 38.462 19.40 0.00 35.07 4.75
1953 1978 8.204160 GGATGTATGCATATATGTTACTGGCTA 58.796 37.037 19.40 2.30 35.07 3.93
1954 1979 9.254133 GATGTATGCATATATGTTACTGGCTAG 57.746 37.037 19.40 0.00 35.07 3.42
1955 1980 7.041721 TGTATGCATATATGTTACTGGCTAGC 58.958 38.462 10.16 6.04 0.00 3.42
1956 1981 5.482163 TGCATATATGTTACTGGCTAGCA 57.518 39.130 18.24 1.68 0.00 3.49
1957 1982 6.053632 TGCATATATGTTACTGGCTAGCAT 57.946 37.500 18.24 3.70 31.64 3.79
1958 1983 5.876460 TGCATATATGTTACTGGCTAGCATG 59.124 40.000 18.24 10.78 29.67 4.06
1959 1984 6.108687 GCATATATGTTACTGGCTAGCATGA 58.891 40.000 18.24 0.00 29.67 3.07
1960 1985 6.765036 GCATATATGTTACTGGCTAGCATGAT 59.235 38.462 18.24 0.00 29.67 2.45
1961 1986 7.928167 GCATATATGTTACTGGCTAGCATGATA 59.072 37.037 18.24 0.00 29.67 2.15
1962 1987 9.254133 CATATATGTTACTGGCTAGCATGATAC 57.746 37.037 18.24 9.10 29.67 2.24
1963 1988 4.336889 TGTTACTGGCTAGCATGATACC 57.663 45.455 18.24 0.00 0.00 2.73
1964 1989 3.243737 TGTTACTGGCTAGCATGATACCG 60.244 47.826 18.24 0.00 0.00 4.02
1965 1990 1.414158 ACTGGCTAGCATGATACCGT 58.586 50.000 18.24 0.00 0.00 4.83
1966 1991 1.341531 ACTGGCTAGCATGATACCGTC 59.658 52.381 18.24 0.00 0.00 4.79
1967 1992 1.615883 CTGGCTAGCATGATACCGTCT 59.384 52.381 18.24 0.00 0.00 4.18
1968 1993 1.613925 TGGCTAGCATGATACCGTCTC 59.386 52.381 18.24 0.00 0.00 3.36
1969 1994 1.067495 GGCTAGCATGATACCGTCTCC 60.067 57.143 18.24 0.00 0.00 3.71
1970 1995 1.889829 GCTAGCATGATACCGTCTCCT 59.110 52.381 10.63 0.00 0.00 3.69
1971 1996 3.082548 GCTAGCATGATACCGTCTCCTA 58.917 50.000 10.63 0.00 0.00 2.94
1972 1997 3.119779 GCTAGCATGATACCGTCTCCTAC 60.120 52.174 10.63 0.00 0.00 3.18
1973 1998 3.231207 AGCATGATACCGTCTCCTACT 57.769 47.619 0.00 0.00 0.00 2.57
1974 1999 2.887783 AGCATGATACCGTCTCCTACTG 59.112 50.000 0.00 0.00 0.00 2.74
1975 2000 2.885266 GCATGATACCGTCTCCTACTGA 59.115 50.000 0.00 0.00 0.00 3.41
1976 2001 3.318275 GCATGATACCGTCTCCTACTGAA 59.682 47.826 0.00 0.00 0.00 3.02
1977 2002 4.021894 GCATGATACCGTCTCCTACTGAAT 60.022 45.833 0.00 0.00 0.00 2.57
1978 2003 5.509840 GCATGATACCGTCTCCTACTGAATT 60.510 44.000 0.00 0.00 0.00 2.17
1979 2004 6.294564 GCATGATACCGTCTCCTACTGAATTA 60.295 42.308 0.00 0.00 0.00 1.40
1980 2005 7.658261 CATGATACCGTCTCCTACTGAATTAA 58.342 38.462 0.00 0.00 0.00 1.40
1981 2006 7.834881 TGATACCGTCTCCTACTGAATTAAT 57.165 36.000 0.00 0.00 0.00 1.40
1982 2007 8.929260 TGATACCGTCTCCTACTGAATTAATA 57.071 34.615 0.00 0.00 0.00 0.98
1983 2008 9.011095 TGATACCGTCTCCTACTGAATTAATAG 57.989 37.037 0.00 0.00 0.00 1.73
1984 2009 8.937207 ATACCGTCTCCTACTGAATTAATAGT 57.063 34.615 0.00 0.00 0.00 2.12
1985 2010 7.040473 ACCGTCTCCTACTGAATTAATAGTG 57.960 40.000 1.77 0.00 0.00 2.74
1986 2011 6.832384 ACCGTCTCCTACTGAATTAATAGTGA 59.168 38.462 1.77 0.00 0.00 3.41
1987 2012 7.013464 ACCGTCTCCTACTGAATTAATAGTGAG 59.987 40.741 1.77 1.76 0.00 3.51
1988 2013 7.228906 CCGTCTCCTACTGAATTAATAGTGAGA 59.771 40.741 1.77 3.69 0.00 3.27
1989 2014 8.622157 CGTCTCCTACTGAATTAATAGTGAGAA 58.378 37.037 8.77 0.00 30.69 2.87
1990 2015 9.959749 GTCTCCTACTGAATTAATAGTGAGAAG 57.040 37.037 8.77 0.00 30.69 2.85
1991 2016 8.634444 TCTCCTACTGAATTAATAGTGAGAAGC 58.366 37.037 1.77 0.00 0.00 3.86
1992 2017 7.727181 TCCTACTGAATTAATAGTGAGAAGCC 58.273 38.462 1.77 0.00 0.00 4.35
1993 2018 7.565398 TCCTACTGAATTAATAGTGAGAAGCCT 59.435 37.037 1.77 0.00 0.00 4.58
1994 2019 8.861086 CCTACTGAATTAATAGTGAGAAGCCTA 58.139 37.037 1.77 0.00 0.00 3.93
1995 2020 9.685828 CTACTGAATTAATAGTGAGAAGCCTAC 57.314 37.037 1.77 0.00 0.00 3.18
1996 2021 7.501844 ACTGAATTAATAGTGAGAAGCCTACC 58.498 38.462 0.00 0.00 0.00 3.18
1997 2022 7.125811 ACTGAATTAATAGTGAGAAGCCTACCA 59.874 37.037 0.00 0.00 0.00 3.25
1998 2023 7.500992 TGAATTAATAGTGAGAAGCCTACCAG 58.499 38.462 0.00 0.00 0.00 4.00
1999 2024 3.828875 AATAGTGAGAAGCCTACCAGC 57.171 47.619 0.00 0.00 0.00 4.85
2001 2026 0.901124 AGTGAGAAGCCTACCAGCTG 59.099 55.000 6.78 6.78 44.11 4.24
2002 2027 0.898320 GTGAGAAGCCTACCAGCTGA 59.102 55.000 17.39 0.00 44.11 4.26
2003 2028 1.276421 GTGAGAAGCCTACCAGCTGAA 59.724 52.381 17.39 1.38 44.11 3.02
2004 2029 2.093235 GTGAGAAGCCTACCAGCTGAAT 60.093 50.000 17.39 5.38 44.11 2.57
2005 2030 2.573462 TGAGAAGCCTACCAGCTGAATT 59.427 45.455 17.39 1.02 44.11 2.17
2006 2031 3.009473 TGAGAAGCCTACCAGCTGAATTT 59.991 43.478 17.39 0.34 44.11 1.82
2007 2032 3.615155 AGAAGCCTACCAGCTGAATTTC 58.385 45.455 17.39 9.79 44.11 2.17
2008 2033 3.009473 AGAAGCCTACCAGCTGAATTTCA 59.991 43.478 17.39 0.00 44.11 2.69
2009 2034 3.659183 AGCCTACCAGCTGAATTTCAT 57.341 42.857 17.39 0.00 42.95 2.57
2010 2035 3.973425 AGCCTACCAGCTGAATTTCATT 58.027 40.909 17.39 0.00 42.95 2.57
2011 2036 3.950395 AGCCTACCAGCTGAATTTCATTC 59.050 43.478 17.39 0.00 42.95 2.67
2012 2037 3.950395 GCCTACCAGCTGAATTTCATTCT 59.050 43.478 17.39 0.00 39.96 2.40
2013 2038 4.400567 GCCTACCAGCTGAATTTCATTCTT 59.599 41.667 17.39 0.00 39.96 2.52
2014 2039 5.590259 GCCTACCAGCTGAATTTCATTCTTA 59.410 40.000 17.39 0.00 39.96 2.10
2015 2040 6.458888 GCCTACCAGCTGAATTTCATTCTTAC 60.459 42.308 17.39 0.00 39.96 2.34
2016 2041 6.599244 CCTACCAGCTGAATTTCATTCTTACA 59.401 38.462 17.39 0.00 39.96 2.41
2017 2042 7.284034 CCTACCAGCTGAATTTCATTCTTACAT 59.716 37.037 17.39 0.00 39.96 2.29
2018 2043 7.093322 ACCAGCTGAATTTCATTCTTACATC 57.907 36.000 17.39 0.00 39.96 3.06
2019 2044 6.660521 ACCAGCTGAATTTCATTCTTACATCA 59.339 34.615 17.39 0.00 39.96 3.07
2020 2045 7.341256 ACCAGCTGAATTTCATTCTTACATCAT 59.659 33.333 17.39 0.00 39.96 2.45
2021 2046 8.843262 CCAGCTGAATTTCATTCTTACATCATA 58.157 33.333 17.39 0.00 39.96 2.15
2185 2217 1.147376 CCGACAACCACAACAGGGA 59.853 57.895 0.00 0.00 0.00 4.20
2398 2465 8.992835 ACTTAGTTTAGTTTGAATAGGTACCG 57.007 34.615 6.18 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.665685 CATTAGTACTCTTTGGGTGTTAATCAC 58.334 37.037 0.00 1.05 45.47 3.06
4 5 8.380099 ACATTAGTACTCTTTGGGTGTTAATCA 58.620 33.333 0.00 0.00 0.00 2.57
5 6 8.665685 CACATTAGTACTCTTTGGGTGTTAATC 58.334 37.037 0.00 0.00 0.00 1.75
6 7 8.161425 ACACATTAGTACTCTTTGGGTGTTAAT 58.839 33.333 0.00 0.00 0.00 1.40
7 8 7.442969 CACACATTAGTACTCTTTGGGTGTTAA 59.557 37.037 19.41 0.00 36.32 2.01
8 9 6.932400 CACACATTAGTACTCTTTGGGTGTTA 59.068 38.462 19.41 0.00 36.32 2.41
9 10 5.763204 CACACATTAGTACTCTTTGGGTGTT 59.237 40.000 19.41 4.37 36.32 3.32
10 11 5.071250 TCACACATTAGTACTCTTTGGGTGT 59.929 40.000 23.51 16.61 39.18 4.16
11 12 5.547465 TCACACATTAGTACTCTTTGGGTG 58.453 41.667 20.73 20.73 39.34 4.61
12 13 5.818678 TCACACATTAGTACTCTTTGGGT 57.181 39.130 0.00 0.00 0.00 4.51
13 14 6.406370 TGATCACACATTAGTACTCTTTGGG 58.594 40.000 0.00 0.00 0.00 4.12
14 15 7.550551 ACATGATCACACATTAGTACTCTTTGG 59.449 37.037 0.00 0.00 0.00 3.28
15 16 8.484641 ACATGATCACACATTAGTACTCTTTG 57.515 34.615 0.00 0.00 0.00 2.77
16 17 9.507329 AAACATGATCACACATTAGTACTCTTT 57.493 29.630 0.00 0.00 0.00 2.52
17 18 9.507329 AAAACATGATCACACATTAGTACTCTT 57.493 29.630 0.00 0.00 0.00 2.85
20 21 9.944376 AGTAAAACATGATCACACATTAGTACT 57.056 29.630 0.00 0.00 0.00 2.73
23 24 9.066892 ACAAGTAAAACATGATCACACATTAGT 57.933 29.630 0.00 0.00 0.00 2.24
24 25 9.333497 CACAAGTAAAACATGATCACACATTAG 57.667 33.333 0.00 0.00 0.00 1.73
25 26 9.061435 TCACAAGTAAAACATGATCACACATTA 57.939 29.630 0.00 0.00 0.00 1.90
26 27 7.939782 TCACAAGTAAAACATGATCACACATT 58.060 30.769 0.00 0.00 0.00 2.71
27 28 7.445096 TCTCACAAGTAAAACATGATCACACAT 59.555 33.333 0.00 0.00 0.00 3.21
28 29 6.765512 TCTCACAAGTAAAACATGATCACACA 59.234 34.615 0.00 0.00 0.00 3.72
29 30 7.171508 TCTCTCACAAGTAAAACATGATCACAC 59.828 37.037 0.00 0.00 0.00 3.82
30 31 7.216494 TCTCTCACAAGTAAAACATGATCACA 58.784 34.615 0.00 0.00 0.00 3.58
31 32 7.658179 TCTCTCACAAGTAAAACATGATCAC 57.342 36.000 0.00 0.00 0.00 3.06
32 33 7.933577 ACTTCTCTCACAAGTAAAACATGATCA 59.066 33.333 0.00 0.00 32.08 2.92
33 34 8.316640 ACTTCTCTCACAAGTAAAACATGATC 57.683 34.615 0.00 0.00 32.08 2.92
34 35 8.682936 AACTTCTCTCACAAGTAAAACATGAT 57.317 30.769 0.00 0.00 32.71 2.45
35 36 8.506168 AAACTTCTCTCACAAGTAAAACATGA 57.494 30.769 0.00 0.00 32.71 3.07
36 37 9.869844 CTAAACTTCTCTCACAAGTAAAACATG 57.130 33.333 0.00 0.00 32.71 3.21
37 38 9.614792 ACTAAACTTCTCTCACAAGTAAAACAT 57.385 29.630 0.00 0.00 32.71 2.71
38 39 9.095065 GACTAAACTTCTCTCACAAGTAAAACA 57.905 33.333 0.00 0.00 32.71 2.83
39 40 9.095065 TGACTAAACTTCTCTCACAAGTAAAAC 57.905 33.333 0.00 0.00 32.71 2.43
40 41 9.661563 TTGACTAAACTTCTCTCACAAGTAAAA 57.338 29.630 0.00 0.00 32.71 1.52
41 42 9.095065 GTTGACTAAACTTCTCTCACAAGTAAA 57.905 33.333 0.00 0.00 32.71 2.01
42 43 7.434307 CGTTGACTAAACTTCTCTCACAAGTAA 59.566 37.037 0.00 0.00 36.56 2.24
43 44 6.916387 CGTTGACTAAACTTCTCTCACAAGTA 59.084 38.462 0.00 0.00 36.56 2.24
44 45 5.749109 CGTTGACTAAACTTCTCTCACAAGT 59.251 40.000 0.00 0.00 36.56 3.16
45 46 5.175856 CCGTTGACTAAACTTCTCTCACAAG 59.824 44.000 0.00 0.00 36.56 3.16
46 47 5.047847 CCGTTGACTAAACTTCTCTCACAA 58.952 41.667 0.00 0.00 36.56 3.33
47 48 4.500887 CCCGTTGACTAAACTTCTCTCACA 60.501 45.833 0.00 0.00 36.56 3.58
48 49 3.988517 CCCGTTGACTAAACTTCTCTCAC 59.011 47.826 0.00 0.00 36.56 3.51
49 50 3.640029 ACCCGTTGACTAAACTTCTCTCA 59.360 43.478 0.00 0.00 36.56 3.27
50 51 4.022155 AGACCCGTTGACTAAACTTCTCTC 60.022 45.833 0.00 0.00 36.56 3.20
51 52 3.896272 AGACCCGTTGACTAAACTTCTCT 59.104 43.478 0.00 0.00 36.56 3.10
52 53 3.988517 CAGACCCGTTGACTAAACTTCTC 59.011 47.826 0.00 0.00 36.56 2.87
53 54 3.802675 GCAGACCCGTTGACTAAACTTCT 60.803 47.826 0.00 0.00 36.56 2.85
54 55 2.479275 GCAGACCCGTTGACTAAACTTC 59.521 50.000 0.00 0.00 36.56 3.01
55 56 2.490991 GCAGACCCGTTGACTAAACTT 58.509 47.619 0.00 0.00 36.56 2.66
56 57 1.270678 GGCAGACCCGTTGACTAAACT 60.271 52.381 0.00 0.00 36.56 2.66
57 58 1.154197 GGCAGACCCGTTGACTAAAC 58.846 55.000 0.00 0.00 35.25 2.01
58 59 0.759959 TGGCAGACCCGTTGACTAAA 59.240 50.000 0.00 0.00 35.87 1.85
59 60 0.759959 TTGGCAGACCCGTTGACTAA 59.240 50.000 0.00 0.00 35.87 2.24
60 61 0.759959 TTTGGCAGACCCGTTGACTA 59.240 50.000 0.00 0.00 35.87 2.59
61 62 0.110486 ATTTGGCAGACCCGTTGACT 59.890 50.000 0.00 0.00 35.87 3.41
62 63 0.958822 AATTTGGCAGACCCGTTGAC 59.041 50.000 0.00 0.00 35.87 3.18
63 64 1.243902 GAATTTGGCAGACCCGTTGA 58.756 50.000 0.00 0.00 35.87 3.18
64 65 0.958091 TGAATTTGGCAGACCCGTTG 59.042 50.000 0.00 0.00 35.87 4.10
65 66 1.202879 TCTGAATTTGGCAGACCCGTT 60.203 47.619 0.00 0.00 37.46 4.44
66 67 0.400213 TCTGAATTTGGCAGACCCGT 59.600 50.000 0.00 0.00 37.46 5.28
67 68 1.672881 GATCTGAATTTGGCAGACCCG 59.327 52.381 0.00 0.00 44.39 5.28
68 69 2.027385 GGATCTGAATTTGGCAGACCC 58.973 52.381 0.00 0.00 44.39 4.46
69 70 2.726821 TGGATCTGAATTTGGCAGACC 58.273 47.619 0.00 0.00 44.39 3.85
70 71 5.533903 ACATATGGATCTGAATTTGGCAGAC 59.466 40.000 7.80 0.00 44.39 3.51
71 72 5.698104 ACATATGGATCTGAATTTGGCAGA 58.302 37.500 7.80 0.00 45.52 4.26
72 73 7.698506 ATACATATGGATCTGAATTTGGCAG 57.301 36.000 7.80 0.00 34.71 4.85
73 74 8.481492 AAATACATATGGATCTGAATTTGGCA 57.519 30.769 7.80 0.00 0.00 4.92
74 75 9.199982 CAAAATACATATGGATCTGAATTTGGC 57.800 33.333 7.80 0.00 0.00 4.52
75 76 9.199982 GCAAAATACATATGGATCTGAATTTGG 57.800 33.333 17.74 2.98 0.00 3.28
76 77 9.752961 TGCAAAATACATATGGATCTGAATTTG 57.247 29.630 14.07 14.07 0.00 2.32
96 97 8.924691 GCATTGTAGACATAGAAATTTGCAAAA 58.075 29.630 17.19 0.00 0.00 2.44
97 98 8.306038 AGCATTGTAGACATAGAAATTTGCAAA 58.694 29.630 15.44 15.44 0.00 3.68
98 99 7.829725 AGCATTGTAGACATAGAAATTTGCAA 58.170 30.769 0.00 0.00 0.00 4.08
99 100 7.337689 AGAGCATTGTAGACATAGAAATTTGCA 59.662 33.333 0.00 0.00 0.00 4.08
100 101 7.642978 CAGAGCATTGTAGACATAGAAATTTGC 59.357 37.037 0.00 0.00 0.00 3.68
101 102 8.671921 ACAGAGCATTGTAGACATAGAAATTTG 58.328 33.333 0.00 0.00 0.00 2.32
102 103 8.798859 ACAGAGCATTGTAGACATAGAAATTT 57.201 30.769 0.00 0.00 0.00 1.82
103 104 9.319143 GTACAGAGCATTGTAGACATAGAAATT 57.681 33.333 1.07 0.00 34.41 1.82
104 105 7.649705 CGTACAGAGCATTGTAGACATAGAAAT 59.350 37.037 1.07 0.00 34.41 2.17
105 106 6.972901 CGTACAGAGCATTGTAGACATAGAAA 59.027 38.462 1.07 0.00 34.41 2.52
106 107 6.459710 CCGTACAGAGCATTGTAGACATAGAA 60.460 42.308 1.07 0.00 34.41 2.10
107 108 5.008712 CCGTACAGAGCATTGTAGACATAGA 59.991 44.000 1.07 0.00 34.41 1.98
108 109 5.008712 TCCGTACAGAGCATTGTAGACATAG 59.991 44.000 1.07 0.00 34.41 2.23
109 110 4.885325 TCCGTACAGAGCATTGTAGACATA 59.115 41.667 1.07 0.00 34.41 2.29
110 111 3.699538 TCCGTACAGAGCATTGTAGACAT 59.300 43.478 1.07 0.00 34.41 3.06
111 112 3.086282 TCCGTACAGAGCATTGTAGACA 58.914 45.455 1.07 0.00 34.41 3.41
112 113 3.696898 CTCCGTACAGAGCATTGTAGAC 58.303 50.000 0.00 0.00 34.41 2.59
122 123 2.866762 GCTAAAATGGCTCCGTACAGAG 59.133 50.000 1.44 1.44 36.92 3.35
123 124 2.500098 AGCTAAAATGGCTCCGTACAGA 59.500 45.455 0.00 0.00 34.70 3.41
124 125 2.906354 AGCTAAAATGGCTCCGTACAG 58.094 47.619 0.00 0.00 34.70 2.74
125 126 4.475051 TTAGCTAAAATGGCTCCGTACA 57.525 40.909 2.97 0.00 40.74 2.90
126 127 5.748592 CAATTAGCTAAAATGGCTCCGTAC 58.251 41.667 10.85 0.00 40.74 3.67
127 128 4.274950 GCAATTAGCTAAAATGGCTCCGTA 59.725 41.667 10.85 0.00 40.74 4.02
128 129 3.066760 GCAATTAGCTAAAATGGCTCCGT 59.933 43.478 10.85 0.00 40.74 4.69
129 130 3.632189 GCAATTAGCTAAAATGGCTCCG 58.368 45.455 10.85 0.00 40.74 4.63
167 168 9.639563 AGATGACTCTAAGTCTCAATCTGAATA 57.360 33.333 8.44 0.00 45.27 1.75
168 169 8.415553 CAGATGACTCTAAGTCTCAATCTGAAT 58.584 37.037 20.48 2.01 45.96 2.57
169 170 7.147932 CCAGATGACTCTAAGTCTCAATCTGAA 60.148 40.741 23.78 1.02 45.96 3.02
170 171 6.320926 CCAGATGACTCTAAGTCTCAATCTGA 59.679 42.308 23.78 1.56 45.96 3.27
171 172 6.320926 TCCAGATGACTCTAAGTCTCAATCTG 59.679 42.308 19.26 19.26 44.46 2.90
172 173 6.430864 TCCAGATGACTCTAAGTCTCAATCT 58.569 40.000 8.44 5.83 45.27 2.40
173 174 6.707440 TCCAGATGACTCTAAGTCTCAATC 57.293 41.667 8.44 3.88 45.27 2.67
174 175 6.838090 TGATCCAGATGACTCTAAGTCTCAAT 59.162 38.462 8.44 0.00 45.27 2.57
175 176 6.190587 TGATCCAGATGACTCTAAGTCTCAA 58.809 40.000 8.44 0.00 45.27 3.02
176 177 5.760131 TGATCCAGATGACTCTAAGTCTCA 58.240 41.667 8.44 0.00 45.27 3.27
177 178 5.827797 ACTGATCCAGATGACTCTAAGTCTC 59.172 44.000 8.44 4.22 39.29 3.36
178 179 5.593909 CACTGATCCAGATGACTCTAAGTCT 59.406 44.000 8.44 0.00 39.29 3.24
179 180 5.359576 ACACTGATCCAGATGACTCTAAGTC 59.640 44.000 0.45 0.08 39.14 3.01
180 181 5.268387 ACACTGATCCAGATGACTCTAAGT 58.732 41.667 0.45 0.00 35.18 2.24
181 182 5.359292 TGACACTGATCCAGATGACTCTAAG 59.641 44.000 0.45 0.00 35.18 2.18
182 183 5.264395 TGACACTGATCCAGATGACTCTAA 58.736 41.667 0.45 0.00 35.18 2.10
183 184 4.860022 TGACACTGATCCAGATGACTCTA 58.140 43.478 0.45 0.00 35.18 2.43
184 185 3.706183 TGACACTGATCCAGATGACTCT 58.294 45.455 0.45 0.00 35.18 3.24
185 186 4.462508 TTGACACTGATCCAGATGACTC 57.537 45.455 0.45 0.00 35.18 3.36
186 187 4.897509 TTTGACACTGATCCAGATGACT 57.102 40.909 0.45 0.00 35.18 3.41
187 188 4.999950 AGTTTTGACACTGATCCAGATGAC 59.000 41.667 0.45 0.00 35.18 3.06
188 189 5.233083 AGTTTTGACACTGATCCAGATGA 57.767 39.130 0.45 0.00 35.18 2.92
189 190 5.696822 CAAGTTTTGACACTGATCCAGATG 58.303 41.667 0.45 0.00 35.18 2.90
190 191 4.217118 GCAAGTTTTGACACTGATCCAGAT 59.783 41.667 0.45 0.00 35.18 2.90
191 192 3.565482 GCAAGTTTTGACACTGATCCAGA 59.435 43.478 0.45 0.00 35.18 3.86
192 193 3.316029 TGCAAGTTTTGACACTGATCCAG 59.684 43.478 0.00 0.00 37.52 3.86
193 194 3.286353 TGCAAGTTTTGACACTGATCCA 58.714 40.909 0.00 0.00 0.00 3.41
194 195 3.988379 TGCAAGTTTTGACACTGATCC 57.012 42.857 0.00 0.00 0.00 3.36
195 196 4.083855 TCGATGCAAGTTTTGACACTGATC 60.084 41.667 0.00 0.00 0.00 2.92
196 197 3.814842 TCGATGCAAGTTTTGACACTGAT 59.185 39.130 0.00 0.00 0.00 2.90
197 198 3.202097 TCGATGCAAGTTTTGACACTGA 58.798 40.909 0.00 0.00 0.00 3.41
198 199 3.607422 TCGATGCAAGTTTTGACACTG 57.393 42.857 0.00 0.00 0.00 3.66
199 200 3.565482 ACATCGATGCAAGTTTTGACACT 59.435 39.130 25.11 0.00 0.00 3.55
200 201 3.888934 ACATCGATGCAAGTTTTGACAC 58.111 40.909 25.11 0.00 0.00 3.67
201 202 5.448438 GTTACATCGATGCAAGTTTTGACA 58.552 37.500 25.11 0.00 0.00 3.58
202 203 4.851558 GGTTACATCGATGCAAGTTTTGAC 59.148 41.667 25.11 10.29 0.00 3.18
203 204 4.083003 GGGTTACATCGATGCAAGTTTTGA 60.083 41.667 25.11 0.00 0.00 2.69
204 205 4.082787 AGGGTTACATCGATGCAAGTTTTG 60.083 41.667 25.11 0.00 0.00 2.44
205 206 4.079253 AGGGTTACATCGATGCAAGTTTT 58.921 39.130 25.11 6.49 0.00 2.43
206 207 3.686016 AGGGTTACATCGATGCAAGTTT 58.314 40.909 25.11 7.24 0.00 2.66
207 208 3.350219 AGGGTTACATCGATGCAAGTT 57.650 42.857 25.11 7.99 0.00 2.66
208 209 3.350219 AAGGGTTACATCGATGCAAGT 57.650 42.857 25.11 8.38 0.00 3.16
209 210 4.260212 CGTAAAGGGTTACATCGATGCAAG 60.260 45.833 25.11 1.78 39.78 4.01
210 211 3.619483 CGTAAAGGGTTACATCGATGCAA 59.381 43.478 25.11 16.22 39.78 4.08
211 212 3.119065 TCGTAAAGGGTTACATCGATGCA 60.119 43.478 25.11 10.14 39.78 3.96
212 213 3.244579 GTCGTAAAGGGTTACATCGATGC 59.755 47.826 25.11 9.06 39.78 3.91
213 214 3.484649 CGTCGTAAAGGGTTACATCGATG 59.515 47.826 23.68 23.68 39.78 3.84
214 215 3.378112 TCGTCGTAAAGGGTTACATCGAT 59.622 43.478 0.00 0.00 39.78 3.59
215 216 2.746904 TCGTCGTAAAGGGTTACATCGA 59.253 45.455 0.00 0.00 39.78 3.59
216 217 3.135414 TCGTCGTAAAGGGTTACATCG 57.865 47.619 0.00 0.00 39.78 3.84
217 218 3.614176 GGTTCGTCGTAAAGGGTTACATC 59.386 47.826 0.00 0.00 39.78 3.06
218 219 3.259123 AGGTTCGTCGTAAAGGGTTACAT 59.741 43.478 0.00 0.00 39.78 2.29
219 220 2.627699 AGGTTCGTCGTAAAGGGTTACA 59.372 45.455 0.00 0.00 39.78 2.41
220 221 3.303881 AGGTTCGTCGTAAAGGGTTAC 57.696 47.619 0.00 0.00 36.94 2.50
221 222 4.335400 AAAGGTTCGTCGTAAAGGGTTA 57.665 40.909 0.00 0.00 0.00 2.85
222 223 2.916702 AAGGTTCGTCGTAAAGGGTT 57.083 45.000 0.00 0.00 0.00 4.11
223 224 2.874086 CAAAAGGTTCGTCGTAAAGGGT 59.126 45.455 0.00 0.00 0.00 4.34
224 225 2.874086 ACAAAAGGTTCGTCGTAAAGGG 59.126 45.455 0.00 0.00 0.00 3.95
225 226 3.556775 TGACAAAAGGTTCGTCGTAAAGG 59.443 43.478 0.00 0.00 32.17 3.11
226 227 4.511734 GTGACAAAAGGTTCGTCGTAAAG 58.488 43.478 0.00 0.00 32.17 1.85
227 228 3.309410 GGTGACAAAAGGTTCGTCGTAAA 59.691 43.478 0.00 0.00 32.17 2.01
228 229 2.865551 GGTGACAAAAGGTTCGTCGTAA 59.134 45.455 0.00 0.00 32.17 3.18
229 230 2.101249 AGGTGACAAAAGGTTCGTCGTA 59.899 45.455 0.00 0.00 32.17 3.43
230 231 1.134610 AGGTGACAAAAGGTTCGTCGT 60.135 47.619 0.00 0.00 32.17 4.34
231 232 1.525619 GAGGTGACAAAAGGTTCGTCG 59.474 52.381 0.00 0.00 32.17 5.12
232 233 1.871676 GGAGGTGACAAAAGGTTCGTC 59.128 52.381 0.00 0.00 0.00 4.20
233 234 1.210967 TGGAGGTGACAAAAGGTTCGT 59.789 47.619 0.00 0.00 0.00 3.85
234 235 1.961793 TGGAGGTGACAAAAGGTTCG 58.038 50.000 0.00 0.00 0.00 3.95
235 236 5.163754 CGATTATGGAGGTGACAAAAGGTTC 60.164 44.000 0.00 0.00 0.00 3.62
236 237 4.700213 CGATTATGGAGGTGACAAAAGGTT 59.300 41.667 0.00 0.00 0.00 3.50
237 238 4.019681 TCGATTATGGAGGTGACAAAAGGT 60.020 41.667 0.00 0.00 0.00 3.50
238 239 4.513442 TCGATTATGGAGGTGACAAAAGG 58.487 43.478 0.00 0.00 0.00 3.11
239 240 5.419542 TCTCGATTATGGAGGTGACAAAAG 58.580 41.667 4.48 0.00 32.34 2.27
240 241 5.414789 TCTCGATTATGGAGGTGACAAAA 57.585 39.130 4.48 0.00 32.34 2.44
241 242 5.414789 TTCTCGATTATGGAGGTGACAAA 57.585 39.130 4.48 0.00 32.34 2.83
242 243 5.175859 GTTTCTCGATTATGGAGGTGACAA 58.824 41.667 4.48 0.00 32.34 3.18
243 244 4.221924 TGTTTCTCGATTATGGAGGTGACA 59.778 41.667 4.48 4.79 32.34 3.58
244 245 4.755411 TGTTTCTCGATTATGGAGGTGAC 58.245 43.478 4.48 2.59 32.34 3.67
245 246 5.614324 ATGTTTCTCGATTATGGAGGTGA 57.386 39.130 4.48 0.00 32.34 4.02
246 247 7.382110 AGATATGTTTCTCGATTATGGAGGTG 58.618 38.462 4.48 0.00 32.34 4.00
247 248 7.546250 AGATATGTTTCTCGATTATGGAGGT 57.454 36.000 4.48 0.00 32.34 3.85
248 249 8.839310 AAAGATATGTTTCTCGATTATGGAGG 57.161 34.615 4.48 0.00 32.34 4.30
255 256 9.113838 AGTGCAATAAAGATATGTTTCTCGATT 57.886 29.630 0.34 0.00 0.00 3.34
256 257 8.668510 AGTGCAATAAAGATATGTTTCTCGAT 57.331 30.769 0.34 0.00 0.00 3.59
257 258 9.594478 TTAGTGCAATAAAGATATGTTTCTCGA 57.406 29.630 3.73 0.00 0.00 4.04
258 259 9.855361 CTTAGTGCAATAAAGATATGTTTCTCG 57.145 33.333 8.12 0.00 0.00 4.04
260 261 9.905713 TCCTTAGTGCAATAAAGATATGTTTCT 57.094 29.630 8.12 0.00 0.00 2.52
272 273 8.402472 CGGTCAAAATTATCCTTAGTGCAATAA 58.598 33.333 6.43 6.43 0.00 1.40
273 274 7.468084 GCGGTCAAAATTATCCTTAGTGCAATA 60.468 37.037 0.00 0.00 0.00 1.90
274 275 6.680378 GCGGTCAAAATTATCCTTAGTGCAAT 60.680 38.462 0.00 0.00 0.00 3.56
275 276 5.392595 GCGGTCAAAATTATCCTTAGTGCAA 60.393 40.000 0.00 0.00 0.00 4.08
276 277 4.095782 GCGGTCAAAATTATCCTTAGTGCA 59.904 41.667 0.00 0.00 0.00 4.57
277 278 4.335594 AGCGGTCAAAATTATCCTTAGTGC 59.664 41.667 0.00 0.00 0.00 4.40
278 279 5.354234 ACAGCGGTCAAAATTATCCTTAGTG 59.646 40.000 0.00 0.00 0.00 2.74
279 280 5.497474 ACAGCGGTCAAAATTATCCTTAGT 58.503 37.500 0.00 0.00 0.00 2.24
280 281 6.093495 TGAACAGCGGTCAAAATTATCCTTAG 59.907 38.462 0.00 0.00 0.00 2.18
281 282 5.941058 TGAACAGCGGTCAAAATTATCCTTA 59.059 36.000 0.00 0.00 0.00 2.69
282 283 4.764823 TGAACAGCGGTCAAAATTATCCTT 59.235 37.500 0.00 0.00 0.00 3.36
283 284 4.331968 TGAACAGCGGTCAAAATTATCCT 58.668 39.130 0.00 0.00 0.00 3.24
284 285 4.156008 ACTGAACAGCGGTCAAAATTATCC 59.844 41.667 1.46 0.00 0.00 2.59
285 286 5.088739 CACTGAACAGCGGTCAAAATTATC 58.911 41.667 1.46 0.00 32.46 1.75
286 287 4.759693 TCACTGAACAGCGGTCAAAATTAT 59.240 37.500 1.46 0.00 32.46 1.28
287 288 4.130857 TCACTGAACAGCGGTCAAAATTA 58.869 39.130 1.46 0.00 32.46 1.40
288 289 2.948979 TCACTGAACAGCGGTCAAAATT 59.051 40.909 1.46 0.00 32.46 1.82
289 290 2.571212 TCACTGAACAGCGGTCAAAAT 58.429 42.857 1.46 0.00 32.46 1.82
290 291 2.031258 TCACTGAACAGCGGTCAAAA 57.969 45.000 1.46 0.00 32.46 2.44
291 292 2.143122 GATCACTGAACAGCGGTCAAA 58.857 47.619 1.46 0.00 32.46 2.69
292 293 1.344438 AGATCACTGAACAGCGGTCAA 59.656 47.619 6.00 0.00 32.46 3.18
293 294 0.969149 AGATCACTGAACAGCGGTCA 59.031 50.000 6.00 0.00 32.46 4.02
294 295 2.164624 AGTAGATCACTGAACAGCGGTC 59.835 50.000 1.46 0.00 35.62 4.79
295 296 2.164624 GAGTAGATCACTGAACAGCGGT 59.835 50.000 1.46 0.00 37.72 5.68
296 297 2.425312 AGAGTAGATCACTGAACAGCGG 59.575 50.000 1.46 0.00 37.72 5.52
297 298 3.773860 AGAGTAGATCACTGAACAGCG 57.226 47.619 1.46 0.00 37.72 5.18
298 299 6.443934 TCTAAGAGTAGATCACTGAACAGC 57.556 41.667 1.46 0.00 37.72 4.40
310 311 9.781633 GGAGTACAATAGTGATCTAAGAGTAGA 57.218 37.037 0.00 0.00 40.68 2.59
311 312 9.005777 GGGAGTACAATAGTGATCTAAGAGTAG 57.994 40.741 0.00 0.00 0.00 2.57
312 313 8.725256 AGGGAGTACAATAGTGATCTAAGAGTA 58.275 37.037 0.00 0.00 0.00 2.59
313 314 7.588169 AGGGAGTACAATAGTGATCTAAGAGT 58.412 38.462 0.00 0.00 0.00 3.24
314 315 8.356657 CAAGGGAGTACAATAGTGATCTAAGAG 58.643 40.741 0.00 0.00 0.00 2.85
315 316 7.201920 GCAAGGGAGTACAATAGTGATCTAAGA 60.202 40.741 0.00 0.00 0.00 2.10
316 317 6.926272 GCAAGGGAGTACAATAGTGATCTAAG 59.074 42.308 0.00 0.00 0.00 2.18
317 318 6.183360 GGCAAGGGAGTACAATAGTGATCTAA 60.183 42.308 0.00 0.00 0.00 2.10
318 319 5.304614 GGCAAGGGAGTACAATAGTGATCTA 59.695 44.000 0.00 0.00 0.00 1.98
319 320 4.101741 GGCAAGGGAGTACAATAGTGATCT 59.898 45.833 0.00 0.00 0.00 2.75
320 321 4.141711 TGGCAAGGGAGTACAATAGTGATC 60.142 45.833 0.00 0.00 0.00 2.92
321 322 3.780294 TGGCAAGGGAGTACAATAGTGAT 59.220 43.478 0.00 0.00 0.00 3.06
322 323 3.178046 TGGCAAGGGAGTACAATAGTGA 58.822 45.455 0.00 0.00 0.00 3.41
323 324 3.627395 TGGCAAGGGAGTACAATAGTG 57.373 47.619 0.00 0.00 0.00 2.74
324 325 4.042934 AGTTTGGCAAGGGAGTACAATAGT 59.957 41.667 0.00 0.00 0.00 2.12
325 326 4.589908 AGTTTGGCAAGGGAGTACAATAG 58.410 43.478 0.00 0.00 0.00 1.73
326 327 4.042311 TGAGTTTGGCAAGGGAGTACAATA 59.958 41.667 0.00 0.00 0.00 1.90
327 328 3.181434 TGAGTTTGGCAAGGGAGTACAAT 60.181 43.478 0.00 0.00 0.00 2.71
328 329 2.173782 TGAGTTTGGCAAGGGAGTACAA 59.826 45.455 0.00 0.00 0.00 2.41
329 330 1.771854 TGAGTTTGGCAAGGGAGTACA 59.228 47.619 0.00 0.00 0.00 2.90
330 331 2.224548 ACTGAGTTTGGCAAGGGAGTAC 60.225 50.000 0.00 0.00 0.00 2.73
331 332 2.054799 ACTGAGTTTGGCAAGGGAGTA 58.945 47.619 0.00 0.00 0.00 2.59
332 333 0.846693 ACTGAGTTTGGCAAGGGAGT 59.153 50.000 0.00 0.00 0.00 3.85
333 334 1.242076 CACTGAGTTTGGCAAGGGAG 58.758 55.000 0.00 0.00 0.00 4.30
334 335 0.550914 ACACTGAGTTTGGCAAGGGA 59.449 50.000 0.00 0.00 0.00 4.20
335 336 2.154462 CTACACTGAGTTTGGCAAGGG 58.846 52.381 0.00 0.00 0.00 3.95
336 337 2.154462 CCTACACTGAGTTTGGCAAGG 58.846 52.381 0.00 0.00 0.00 3.61
337 338 2.154462 CCCTACACTGAGTTTGGCAAG 58.846 52.381 0.00 0.00 0.00 4.01
338 339 1.493022 ACCCTACACTGAGTTTGGCAA 59.507 47.619 0.00 0.00 0.00 4.52
339 340 1.136828 ACCCTACACTGAGTTTGGCA 58.863 50.000 0.00 0.00 0.00 4.92
340 341 3.270877 CATACCCTACACTGAGTTTGGC 58.729 50.000 0.00 0.00 0.00 4.52
341 342 3.270877 GCATACCCTACACTGAGTTTGG 58.729 50.000 0.00 0.00 0.00 3.28
342 343 3.937814 TGCATACCCTACACTGAGTTTG 58.062 45.455 0.00 0.00 0.00 2.93
343 344 4.634012 TTGCATACCCTACACTGAGTTT 57.366 40.909 0.00 0.00 0.00 2.66
344 345 4.844349 ATTGCATACCCTACACTGAGTT 57.156 40.909 0.00 0.00 0.00 3.01
345 346 5.208890 TCTATTGCATACCCTACACTGAGT 58.791 41.667 0.00 0.00 0.00 3.41
346 347 5.791336 TCTATTGCATACCCTACACTGAG 57.209 43.478 0.00 0.00 0.00 3.35
347 348 6.015095 CAGATCTATTGCATACCCTACACTGA 60.015 42.308 0.00 0.00 0.00 3.41
348 349 6.015095 TCAGATCTATTGCATACCCTACACTG 60.015 42.308 0.00 0.00 0.00 3.66
349 350 6.077993 TCAGATCTATTGCATACCCTACACT 58.922 40.000 0.00 0.00 0.00 3.55
350 351 6.346477 TCAGATCTATTGCATACCCTACAC 57.654 41.667 0.00 0.00 0.00 2.90
351 352 7.673926 TGTATCAGATCTATTGCATACCCTACA 59.326 37.037 0.00 0.00 0.00 2.74
352 353 7.976734 GTGTATCAGATCTATTGCATACCCTAC 59.023 40.741 0.00 0.00 0.00 3.18
353 354 7.673926 TGTGTATCAGATCTATTGCATACCCTA 59.326 37.037 0.00 0.00 0.00 3.53
354 355 6.498303 TGTGTATCAGATCTATTGCATACCCT 59.502 38.462 0.00 0.00 0.00 4.34
355 356 6.701340 TGTGTATCAGATCTATTGCATACCC 58.299 40.000 0.00 0.00 0.00 3.69
356 357 8.037166 TGATGTGTATCAGATCTATTGCATACC 58.963 37.037 0.00 0.00 38.37 2.73
357 358 8.992835 TGATGTGTATCAGATCTATTGCATAC 57.007 34.615 0.00 0.00 38.37 2.39
358 359 9.595823 CATGATGTGTATCAGATCTATTGCATA 57.404 33.333 0.00 0.00 45.89 3.14
359 360 8.319146 TCATGATGTGTATCAGATCTATTGCAT 58.681 33.333 0.00 0.00 45.89 3.96
360 361 7.601508 GTCATGATGTGTATCAGATCTATTGCA 59.398 37.037 0.00 0.00 45.89 4.08
361 362 7.601508 TGTCATGATGTGTATCAGATCTATTGC 59.398 37.037 0.00 0.00 45.89 3.56
362 363 9.654663 ATGTCATGATGTGTATCAGATCTATTG 57.345 33.333 0.00 4.55 45.89 1.90
375 376 9.376075 TGTTTTGTTTTAAATGTCATGATGTGT 57.624 25.926 0.00 0.00 0.00 3.72
376 377 9.852481 CTGTTTTGTTTTAAATGTCATGATGTG 57.148 29.630 0.00 0.00 0.00 3.21
377 378 9.814899 TCTGTTTTGTTTTAAATGTCATGATGT 57.185 25.926 0.00 0.00 0.00 3.06
380 381 8.816144 GCTTCTGTTTTGTTTTAAATGTCATGA 58.184 29.630 0.00 0.00 0.00 3.07
381 382 8.819974 AGCTTCTGTTTTGTTTTAAATGTCATG 58.180 29.630 0.00 0.00 0.00 3.07
382 383 8.947055 AGCTTCTGTTTTGTTTTAAATGTCAT 57.053 26.923 0.00 0.00 0.00 3.06
383 384 9.515020 CTAGCTTCTGTTTTGTTTTAAATGTCA 57.485 29.630 0.00 0.00 0.00 3.58
419 420 1.492176 GATTGAGGGAGCATTCTGGGA 59.508 52.381 0.00 0.00 0.00 4.37
420 421 1.213678 TGATTGAGGGAGCATTCTGGG 59.786 52.381 0.00 0.00 0.00 4.45
453 454 2.379972 CCAGAAGGTAGATCAGACGGT 58.620 52.381 0.00 0.00 0.00 4.83
459 460 1.320344 ACGCGCCAGAAGGTAGATCA 61.320 55.000 5.73 0.00 37.19 2.92
465 466 2.867855 TTCAGACGCGCCAGAAGGT 61.868 57.895 5.73 0.00 37.19 3.50
485 487 1.827344 ACTGCAGATGAAGATCCGACA 59.173 47.619 23.35 0.00 0.00 4.35
498 500 7.500892 TGAAGTAAAATTAGGTTTGACTGCAGA 59.499 33.333 23.35 0.00 40.56 4.26
521 523 4.008330 TGGACTACAAAAACAACCGTGAA 58.992 39.130 0.00 0.00 0.00 3.18
529 531 6.405286 CCACTTGTCATTGGACTACAAAAACA 60.405 38.462 0.00 0.00 44.61 2.83
685 695 1.203440 AGAAAGGAGGCTAGGGTTCCA 60.203 52.381 0.00 0.00 33.32 3.53
730 740 2.284995 GAGAGGGAGGGGTGCAGT 60.285 66.667 0.00 0.00 0.00 4.40
924 934 4.742649 AGAGGCTCGGCTCCACGA 62.743 66.667 15.79 0.00 41.13 4.35
981 991 3.289836 CATCTCTCTCTCTCTCCTGCAA 58.710 50.000 0.00 0.00 0.00 4.08
995 1005 1.202758 TCTCCCTCTCTCGCATCTCTC 60.203 57.143 0.00 0.00 0.00 3.20
996 1006 0.843309 TCTCCCTCTCTCGCATCTCT 59.157 55.000 0.00 0.00 0.00 3.10
997 1007 1.202758 TCTCTCCCTCTCTCGCATCTC 60.203 57.143 0.00 0.00 0.00 2.75
1003 1013 2.622942 CCTTCATTCTCTCCCTCTCTCG 59.377 54.545 0.00 0.00 0.00 4.04
1019 1029 1.002274 GCCTCCCTCCTCTCCTTCA 59.998 63.158 0.00 0.00 0.00 3.02
1043 1053 4.361971 TGACCCTCTCCCGTCGCT 62.362 66.667 0.00 0.00 0.00 4.93
1175 1195 1.951130 CCGCAGAACATCGATCCCG 60.951 63.158 0.00 0.00 37.07 5.14
1292 1312 1.198713 GGAGCACAAGATCCTGGAGA 58.801 55.000 1.52 0.00 46.84 3.71
1371 1391 2.886523 CAAACTCACCATGGAAGAGCAA 59.113 45.455 27.50 4.18 32.71 3.91
1478 1500 6.372659 CCAATTTTAGCTAGCAAGAACAGAGA 59.627 38.462 18.83 0.00 0.00 3.10
1563 1585 8.837788 ATATCTCAAGAAAATGCGATATGACA 57.162 30.769 0.00 0.00 36.73 3.58
1625 1647 2.435059 GCTGCCGAAGAGTGGGAC 60.435 66.667 0.00 0.00 0.00 4.46
1674 1696 8.837099 AAAACCCATCATAAACATGATCCTAA 57.163 30.769 0.00 0.00 39.10 2.69
1694 1716 4.138487 ACCTCTGTATCGATGGAAAACC 57.862 45.455 8.54 0.00 0.00 3.27
1695 1717 6.513180 TCATACCTCTGTATCGATGGAAAAC 58.487 40.000 8.54 0.00 35.46 2.43
1925 1950 8.204160 GCCAGTAACATATATGCATACATCCTA 58.796 37.037 21.90 0.00 37.74 2.94
1926 1951 7.050377 GCCAGTAACATATATGCATACATCCT 58.950 38.462 21.90 0.00 37.74 3.24
1927 1952 7.050377 AGCCAGTAACATATATGCATACATCC 58.950 38.462 21.90 13.42 37.74 3.51
1928 1953 9.254133 CTAGCCAGTAACATATATGCATACATC 57.746 37.037 21.90 14.05 37.74 3.06
1929 1954 7.712639 GCTAGCCAGTAACATATATGCATACAT 59.287 37.037 21.90 0.00 40.49 2.29
1930 1955 7.041721 GCTAGCCAGTAACATATATGCATACA 58.958 38.462 21.90 0.00 0.00 2.29
1931 1956 7.041721 TGCTAGCCAGTAACATATATGCATAC 58.958 38.462 13.29 14.85 0.00 2.39
1932 1957 7.181569 TGCTAGCCAGTAACATATATGCATA 57.818 36.000 13.29 9.27 0.00 3.14
1933 1958 6.053632 TGCTAGCCAGTAACATATATGCAT 57.946 37.500 13.29 3.79 0.00 3.96
1934 1959 5.482163 TGCTAGCCAGTAACATATATGCA 57.518 39.130 13.29 0.00 0.00 3.96
1935 1960 6.108687 TCATGCTAGCCAGTAACATATATGC 58.891 40.000 13.29 0.00 0.00 3.14
1936 1961 9.254133 GTATCATGCTAGCCAGTAACATATATG 57.746 37.037 13.29 11.29 0.00 1.78
1937 1962 8.424918 GGTATCATGCTAGCCAGTAACATATAT 58.575 37.037 13.29 0.00 0.00 0.86
1938 1963 7.416326 CGGTATCATGCTAGCCAGTAACATATA 60.416 40.741 13.29 0.00 0.00 0.86
1939 1964 6.628175 CGGTATCATGCTAGCCAGTAACATAT 60.628 42.308 13.29 0.00 0.00 1.78
1940 1965 5.336451 CGGTATCATGCTAGCCAGTAACATA 60.336 44.000 13.29 0.00 0.00 2.29
1941 1966 4.561530 CGGTATCATGCTAGCCAGTAACAT 60.562 45.833 13.29 0.00 0.00 2.71
1942 1967 3.243737 CGGTATCATGCTAGCCAGTAACA 60.244 47.826 13.29 0.00 0.00 2.41
1943 1968 3.243771 ACGGTATCATGCTAGCCAGTAAC 60.244 47.826 13.29 5.21 0.00 2.50
1944 1969 2.963101 ACGGTATCATGCTAGCCAGTAA 59.037 45.455 13.29 0.00 0.00 2.24
1945 1970 2.557056 GACGGTATCATGCTAGCCAGTA 59.443 50.000 13.29 0.00 0.00 2.74
1946 1971 1.341531 GACGGTATCATGCTAGCCAGT 59.658 52.381 13.29 1.85 0.00 4.00
1947 1972 1.615883 AGACGGTATCATGCTAGCCAG 59.384 52.381 13.29 4.58 0.00 4.85
1948 1973 1.613925 GAGACGGTATCATGCTAGCCA 59.386 52.381 13.29 0.24 0.00 4.75
1949 1974 1.067495 GGAGACGGTATCATGCTAGCC 60.067 57.143 13.29 0.00 0.00 3.93
1950 1975 1.889829 AGGAGACGGTATCATGCTAGC 59.110 52.381 8.10 8.10 0.00 3.42
1951 1976 4.155099 CAGTAGGAGACGGTATCATGCTAG 59.845 50.000 7.65 0.49 0.00 3.42
1952 1977 4.072839 CAGTAGGAGACGGTATCATGCTA 58.927 47.826 7.65 0.00 0.00 3.49
1953 1978 2.887783 CAGTAGGAGACGGTATCATGCT 59.112 50.000 2.26 2.26 0.00 3.79
1954 1979 2.885266 TCAGTAGGAGACGGTATCATGC 59.115 50.000 5.02 1.04 0.00 4.06
1955 1980 5.713792 ATTCAGTAGGAGACGGTATCATG 57.286 43.478 5.02 0.00 0.00 3.07
1956 1981 7.834881 TTAATTCAGTAGGAGACGGTATCAT 57.165 36.000 5.02 0.00 0.00 2.45
1957 1982 7.834881 ATTAATTCAGTAGGAGACGGTATCA 57.165 36.000 5.02 0.00 0.00 2.15
1958 1983 9.012161 ACTATTAATTCAGTAGGAGACGGTATC 57.988 37.037 0.00 0.00 0.00 2.24
1959 1984 8.794553 CACTATTAATTCAGTAGGAGACGGTAT 58.205 37.037 0.00 0.00 0.00 2.73
1960 1985 7.994911 TCACTATTAATTCAGTAGGAGACGGTA 59.005 37.037 0.00 0.00 0.00 4.02
1961 1986 6.832384 TCACTATTAATTCAGTAGGAGACGGT 59.168 38.462 0.00 0.00 0.00 4.83
1962 1987 7.228906 TCTCACTATTAATTCAGTAGGAGACGG 59.771 40.741 0.00 0.00 0.00 4.79
1963 1988 8.155821 TCTCACTATTAATTCAGTAGGAGACG 57.844 38.462 0.00 0.00 0.00 4.18
1964 1989 9.959749 CTTCTCACTATTAATTCAGTAGGAGAC 57.040 37.037 7.46 0.00 29.58 3.36
1965 1990 8.634444 GCTTCTCACTATTAATTCAGTAGGAGA 58.366 37.037 0.00 0.00 0.00 3.71
1966 1991 7.870445 GGCTTCTCACTATTAATTCAGTAGGAG 59.130 40.741 0.00 0.00 0.00 3.69
1967 1992 7.565398 AGGCTTCTCACTATTAATTCAGTAGGA 59.435 37.037 0.00 0.00 0.00 2.94
1968 1993 7.731054 AGGCTTCTCACTATTAATTCAGTAGG 58.269 38.462 0.00 0.00 0.00 3.18
1969 1994 9.685828 GTAGGCTTCTCACTATTAATTCAGTAG 57.314 37.037 0.00 0.00 0.00 2.57
1970 1995 8.639761 GGTAGGCTTCTCACTATTAATTCAGTA 58.360 37.037 0.00 0.00 0.00 2.74
1971 1996 7.125811 TGGTAGGCTTCTCACTATTAATTCAGT 59.874 37.037 0.00 0.00 0.00 3.41
1972 1997 7.500992 TGGTAGGCTTCTCACTATTAATTCAG 58.499 38.462 0.00 0.00 0.00 3.02
1973 1998 7.432148 TGGTAGGCTTCTCACTATTAATTCA 57.568 36.000 0.00 0.00 0.00 2.57
1974 1999 6.425417 GCTGGTAGGCTTCTCACTATTAATTC 59.575 42.308 0.00 0.00 0.00 2.17
1975 2000 6.100424 AGCTGGTAGGCTTCTCACTATTAATT 59.900 38.462 0.00 0.00 39.86 1.40
1976 2001 5.604650 AGCTGGTAGGCTTCTCACTATTAAT 59.395 40.000 0.00 0.00 39.86 1.40
1977 2002 4.962995 AGCTGGTAGGCTTCTCACTATTAA 59.037 41.667 0.00 0.00 39.86 1.40
1978 2003 4.342378 CAGCTGGTAGGCTTCTCACTATTA 59.658 45.833 5.57 0.00 41.00 0.98
1979 2004 3.133721 CAGCTGGTAGGCTTCTCACTATT 59.866 47.826 5.57 0.00 41.00 1.73
1980 2005 2.697751 CAGCTGGTAGGCTTCTCACTAT 59.302 50.000 5.57 0.00 41.00 2.12
1981 2006 2.103373 CAGCTGGTAGGCTTCTCACTA 58.897 52.381 5.57 0.00 41.00 2.74
1982 2007 0.901124 CAGCTGGTAGGCTTCTCACT 59.099 55.000 5.57 0.00 41.00 3.41
1983 2008 0.898320 TCAGCTGGTAGGCTTCTCAC 59.102 55.000 15.13 0.00 41.00 3.51
1984 2009 1.644509 TTCAGCTGGTAGGCTTCTCA 58.355 50.000 15.13 0.00 41.00 3.27
1985 2010 2.998316 ATTCAGCTGGTAGGCTTCTC 57.002 50.000 15.13 0.00 41.00 2.87
1986 2011 3.009473 TGAAATTCAGCTGGTAGGCTTCT 59.991 43.478 15.13 0.00 41.00 2.85
1987 2012 3.347216 TGAAATTCAGCTGGTAGGCTTC 58.653 45.455 15.13 8.99 41.00 3.86
1988 2013 3.439857 TGAAATTCAGCTGGTAGGCTT 57.560 42.857 15.13 0.00 41.00 4.35
1989 2014 3.659183 ATGAAATTCAGCTGGTAGGCT 57.341 42.857 15.13 0.00 44.10 4.58
2185 2217 2.194056 CTTGGCGGCTGGATCCAT 59.806 61.111 16.63 0.00 0.00 3.41
2398 2465 5.791666 AGTTACTGAACCTAGCCTTGTTAC 58.208 41.667 0.00 0.00 36.08 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.