Multiple sequence alignment - TraesCS5B01G128100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G128100 chr5B 100.000 3527 0 0 1 3527 233921283 233924809 0.000000e+00 6514.0
1 TraesCS5B01G128100 chr5B 94.872 39 1 1 235 273 656722558 656722521 3.800000e-05 60.2
2 TraesCS5B01G128100 chr5D 95.149 2680 93 22 176 2840 217754218 217756875 0.000000e+00 4194.0
3 TraesCS5B01G128100 chr5D 90.331 362 28 5 2969 3325 217757098 217757457 5.330000e-128 468.0
4 TraesCS5B01G128100 chr5D 92.500 120 7 2 3327 3444 217757805 217757924 1.680000e-38 171.0
5 TraesCS5B01G128100 chr5D 93.333 60 2 2 2842 2900 362406752 362406694 1.740000e-13 87.9
6 TraesCS5B01G128100 chr5A 95.492 2551 89 9 312 2840 290547303 290549849 0.000000e+00 4050.0
7 TraesCS5B01G128100 chr5A 92.086 278 17 4 2915 3189 290549847 290550122 1.540000e-103 387.0
8 TraesCS5B01G128100 chr5A 88.889 279 25 5 3183 3455 290550430 290550708 4.360000e-89 339.0
9 TraesCS5B01G128100 chr2A 90.260 1540 125 11 964 2492 749448110 749446585 0.000000e+00 1989.0
10 TraesCS5B01G128100 chr2A 90.404 1511 129 5 1000 2504 749523741 749525241 0.000000e+00 1973.0
11 TraesCS5B01G128100 chr2D 90.027 1504 134 7 1000 2497 618532333 618530840 0.000000e+00 1932.0
12 TraesCS5B01G128100 chr2D 91.591 1320 102 5 1188 2507 618645451 618646761 0.000000e+00 1814.0
13 TraesCS5B01G128100 chr2D 80.120 166 29 3 1 164 619590704 619590867 1.720000e-23 121.0
14 TraesCS5B01G128100 chr2D 91.803 61 2 3 2842 2900 93053981 93053922 8.110000e-12 82.4
15 TraesCS5B01G128100 chr2B 90.067 1500 131 7 1000 2492 755038359 755036871 0.000000e+00 1929.0
16 TraesCS5B01G128100 chr2B 90.890 966 70 7 1000 1958 755054585 755055539 0.000000e+00 1280.0
17 TraesCS5B01G128100 chr2B 90.809 544 50 0 1949 2492 755056005 755056548 0.000000e+00 728.0
18 TraesCS5B01G128100 chr2B 95.000 60 1 2 2842 2900 576567550 576567608 3.750000e-15 93.5
19 TraesCS5B01G128100 chr2B 91.935 62 5 0 2839 2900 9552908 9552969 1.740000e-13 87.9
20 TraesCS5B01G128100 chr2B 92.063 63 3 2 2839 2900 82190772 82190833 1.740000e-13 87.9
21 TraesCS5B01G128100 chr4D 83.289 1508 219 18 1012 2498 115543837 115542342 0.000000e+00 1358.0
22 TraesCS5B01G128100 chr4D 92.063 63 3 2 2839 2900 67233282 67233343 1.740000e-13 87.9
23 TraesCS5B01G128100 chr4A 82.614 1507 231 16 1012 2498 461353990 461355485 0.000000e+00 1303.0
24 TraesCS5B01G128100 chr3B 87.654 162 20 0 1 162 229509489 229509328 4.650000e-44 189.0
25 TraesCS5B01G128100 chr3B 79.268 164 29 4 1 162 418312224 418312384 3.720000e-20 110.0
26 TraesCS5B01G128100 chr7B 82.090 134 20 3 31 162 23060876 23060745 1.030000e-20 111.0
27 TraesCS5B01G128100 chr7B 81.679 131 21 3 37 164 157215673 157215803 4.820000e-19 106.0
28 TraesCS5B01G128100 chr7A 92.308 65 3 2 2837 2900 536770432 536770369 1.350000e-14 91.6
29 TraesCS5B01G128100 chr6D 88.732 71 4 3 2833 2900 301102143 301102212 2.260000e-12 84.2
30 TraesCS5B01G128100 chr3D 90.625 64 4 2 2838 2900 105844432 105844370 2.260000e-12 84.2
31 TraesCS5B01G128100 chr7D 83.824 68 9 2 238 304 18555716 18555782 2.940000e-06 63.9
32 TraesCS5B01G128100 chr1D 100.000 28 0 0 235 262 398479955 398479928 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G128100 chr5B 233921283 233924809 3526 False 6514 6514 100.000000 1 3527 1 chr5B.!!$F1 3526
1 TraesCS5B01G128100 chr5D 217754218 217757924 3706 False 1611 4194 92.660000 176 3444 3 chr5D.!!$F1 3268
2 TraesCS5B01G128100 chr5A 290547303 290550708 3405 False 1592 4050 92.155667 312 3455 3 chr5A.!!$F1 3143
3 TraesCS5B01G128100 chr2A 749446585 749448110 1525 True 1989 1989 90.260000 964 2492 1 chr2A.!!$R1 1528
4 TraesCS5B01G128100 chr2A 749523741 749525241 1500 False 1973 1973 90.404000 1000 2504 1 chr2A.!!$F1 1504
5 TraesCS5B01G128100 chr2D 618530840 618532333 1493 True 1932 1932 90.027000 1000 2497 1 chr2D.!!$R2 1497
6 TraesCS5B01G128100 chr2D 618645451 618646761 1310 False 1814 1814 91.591000 1188 2507 1 chr2D.!!$F1 1319
7 TraesCS5B01G128100 chr2B 755036871 755038359 1488 True 1929 1929 90.067000 1000 2492 1 chr2B.!!$R1 1492
8 TraesCS5B01G128100 chr2B 755054585 755056548 1963 False 1004 1280 90.849500 1000 2492 2 chr2B.!!$F4 1492
9 TraesCS5B01G128100 chr4D 115542342 115543837 1495 True 1358 1358 83.289000 1012 2498 1 chr4D.!!$R1 1486
10 TraesCS5B01G128100 chr4A 461353990 461355485 1495 False 1303 1303 82.614000 1012 2498 1 chr4A.!!$F1 1486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.036732 CCAGACTTGCAGCCAACCTA 59.963 55.0 0.00 0.00 0.00 3.08 F
441 450 0.173708 AATGAAGCCGGAGTCGACTC 59.826 55.0 32.96 32.96 42.14 3.36 F
743 754 0.735978 CCGTGCTACATCAACGAGCA 60.736 55.0 0.00 0.00 43.74 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 2658 1.675219 GCCTTCCACGTAGGTTCCA 59.325 57.895 4.81 0.0 39.02 3.53 R
2370 2886 4.314440 GCTCTCACCACGGCCACA 62.314 66.667 2.24 0.0 0.00 4.17 R
2530 3046 3.119495 AGCGCATCCCAATTTTTCACTAC 60.119 43.478 11.47 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.655769 GTCATATAGACATGCAATTGTTAAGTG 57.344 33.333 7.40 2.28 46.77 3.16
37 38 9.394767 TCATATAGACATGCAATTGTTAAGTGT 57.605 29.630 7.40 5.33 0.00 3.55
42 43 8.801715 AGACATGCAATTGTTAAGTGTTTAAG 57.198 30.769 7.40 0.00 29.71 1.85
43 44 8.413229 AGACATGCAATTGTTAAGTGTTTAAGT 58.587 29.630 7.40 0.00 29.71 2.24
44 45 9.672086 GACATGCAATTGTTAAGTGTTTAAGTA 57.328 29.630 7.40 0.00 29.71 2.24
56 57 9.849166 TTAAGTGTTTAAGTATTTATTGCAGCC 57.151 29.630 0.00 0.00 0.00 4.85
57 58 7.461182 AGTGTTTAAGTATTTATTGCAGCCA 57.539 32.000 0.00 0.00 0.00 4.75
58 59 7.538575 AGTGTTTAAGTATTTATTGCAGCCAG 58.461 34.615 0.00 0.00 0.00 4.85
59 60 7.393234 AGTGTTTAAGTATTTATTGCAGCCAGA 59.607 33.333 0.00 0.00 0.00 3.86
60 61 7.484959 GTGTTTAAGTATTTATTGCAGCCAGAC 59.515 37.037 0.00 0.00 0.00 3.51
61 62 7.393234 TGTTTAAGTATTTATTGCAGCCAGACT 59.607 33.333 0.00 0.00 0.00 3.24
62 63 7.938140 TTAAGTATTTATTGCAGCCAGACTT 57.062 32.000 0.00 7.03 0.00 3.01
63 64 5.824904 AGTATTTATTGCAGCCAGACTTG 57.175 39.130 0.00 0.00 0.00 3.16
64 65 3.515330 ATTTATTGCAGCCAGACTTGC 57.485 42.857 0.00 0.00 0.00 4.01
65 66 1.908344 TTATTGCAGCCAGACTTGCA 58.092 45.000 0.85 0.00 32.76 4.08
66 67 1.456296 TATTGCAGCCAGACTTGCAG 58.544 50.000 0.85 0.00 35.05 4.41
67 68 1.874345 ATTGCAGCCAGACTTGCAGC 61.874 55.000 8.74 8.74 41.11 5.25
68 69 3.745803 GCAGCCAGACTTGCAGCC 61.746 66.667 4.74 0.00 35.46 4.85
69 70 2.281970 CAGCCAGACTTGCAGCCA 60.282 61.111 0.85 0.00 0.00 4.75
70 71 1.900016 CAGCCAGACTTGCAGCCAA 60.900 57.895 0.85 0.00 0.00 4.52
71 72 1.900498 AGCCAGACTTGCAGCCAAC 60.900 57.895 0.85 0.00 0.00 3.77
72 73 2.924105 GCCAGACTTGCAGCCAACC 61.924 63.158 0.00 0.00 0.00 3.77
73 74 1.228367 CCAGACTTGCAGCCAACCT 60.228 57.895 0.00 0.00 0.00 3.50
74 75 0.036732 CCAGACTTGCAGCCAACCTA 59.963 55.000 0.00 0.00 0.00 3.08
75 76 1.545428 CCAGACTTGCAGCCAACCTAA 60.545 52.381 0.00 0.00 0.00 2.69
76 77 1.808945 CAGACTTGCAGCCAACCTAAG 59.191 52.381 0.00 0.00 0.00 2.18
77 78 1.699634 AGACTTGCAGCCAACCTAAGA 59.300 47.619 0.00 0.00 0.00 2.10
78 79 2.079925 GACTTGCAGCCAACCTAAGAG 58.920 52.381 0.00 0.00 0.00 2.85
79 80 0.807496 CTTGCAGCCAACCTAAGAGC 59.193 55.000 0.00 0.00 0.00 4.09
80 81 0.609131 TTGCAGCCAACCTAAGAGCC 60.609 55.000 0.00 0.00 0.00 4.70
81 82 1.002134 GCAGCCAACCTAAGAGCCA 60.002 57.895 0.00 0.00 0.00 4.75
82 83 1.028868 GCAGCCAACCTAAGAGCCAG 61.029 60.000 0.00 0.00 0.00 4.85
83 84 1.028868 CAGCCAACCTAAGAGCCAGC 61.029 60.000 0.00 0.00 0.00 4.85
84 85 1.750780 GCCAACCTAAGAGCCAGCC 60.751 63.158 0.00 0.00 0.00 4.85
85 86 1.994463 CCAACCTAAGAGCCAGCCT 59.006 57.895 0.00 0.00 0.00 4.58
86 87 1.204146 CCAACCTAAGAGCCAGCCTA 58.796 55.000 0.00 0.00 0.00 3.93
87 88 1.771255 CCAACCTAAGAGCCAGCCTAT 59.229 52.381 0.00 0.00 0.00 2.57
88 89 2.173569 CCAACCTAAGAGCCAGCCTATT 59.826 50.000 0.00 0.00 0.00 1.73
89 90 3.209410 CAACCTAAGAGCCAGCCTATTG 58.791 50.000 0.00 0.00 0.00 1.90
90 91 2.482494 ACCTAAGAGCCAGCCTATTGT 58.518 47.619 0.00 0.00 0.00 2.71
91 92 3.654273 ACCTAAGAGCCAGCCTATTGTA 58.346 45.455 0.00 0.00 0.00 2.41
92 93 4.235372 ACCTAAGAGCCAGCCTATTGTAT 58.765 43.478 0.00 0.00 0.00 2.29
93 94 4.040952 ACCTAAGAGCCAGCCTATTGTATG 59.959 45.833 0.00 0.00 0.00 2.39
94 95 3.498774 AAGAGCCAGCCTATTGTATGG 57.501 47.619 0.00 0.00 35.84 2.74
95 96 1.701847 AGAGCCAGCCTATTGTATGGG 59.298 52.381 0.00 0.00 33.23 4.00
96 97 1.421646 GAGCCAGCCTATTGTATGGGT 59.578 52.381 0.00 0.00 45.77 4.51
101 102 3.864789 AGCCTATTGTATGGGTGAAGG 57.135 47.619 0.00 0.00 32.72 3.46
102 103 2.158608 AGCCTATTGTATGGGTGAAGGC 60.159 50.000 2.24 2.24 46.67 4.35
103 104 2.158608 GCCTATTGTATGGGTGAAGGCT 60.159 50.000 3.26 0.00 43.70 4.58
104 105 3.688414 GCCTATTGTATGGGTGAAGGCTT 60.688 47.826 0.00 0.00 43.70 4.35
105 106 4.536765 CCTATTGTATGGGTGAAGGCTTT 58.463 43.478 0.00 0.00 0.00 3.51
106 107 5.690865 CCTATTGTATGGGTGAAGGCTTTA 58.309 41.667 0.00 0.00 0.00 1.85
107 108 5.765182 CCTATTGTATGGGTGAAGGCTTTAG 59.235 44.000 0.00 0.00 0.00 1.85
108 109 3.644966 TGTATGGGTGAAGGCTTTAGG 57.355 47.619 0.00 0.00 0.00 2.69
109 110 2.916934 TGTATGGGTGAAGGCTTTAGGT 59.083 45.455 0.00 0.00 0.00 3.08
110 111 4.105577 TGTATGGGTGAAGGCTTTAGGTA 58.894 43.478 0.00 0.00 0.00 3.08
111 112 4.536888 TGTATGGGTGAAGGCTTTAGGTAA 59.463 41.667 0.00 0.00 0.00 2.85
112 113 4.881157 ATGGGTGAAGGCTTTAGGTAAT 57.119 40.909 0.00 0.00 0.00 1.89
113 114 3.963129 TGGGTGAAGGCTTTAGGTAATG 58.037 45.455 0.00 0.00 0.00 1.90
114 115 3.332485 TGGGTGAAGGCTTTAGGTAATGT 59.668 43.478 0.00 0.00 0.00 2.71
115 116 3.694566 GGGTGAAGGCTTTAGGTAATGTG 59.305 47.826 0.00 0.00 0.00 3.21
116 117 3.694566 GGTGAAGGCTTTAGGTAATGTGG 59.305 47.826 0.00 0.00 0.00 4.17
117 118 3.128764 GTGAAGGCTTTAGGTAATGTGGC 59.871 47.826 0.00 0.00 0.00 5.01
118 119 2.038387 AGGCTTTAGGTAATGTGGCG 57.962 50.000 0.00 0.00 0.00 5.69
119 120 1.557832 AGGCTTTAGGTAATGTGGCGA 59.442 47.619 0.00 0.00 0.00 5.54
120 121 2.172717 AGGCTTTAGGTAATGTGGCGAT 59.827 45.455 0.00 0.00 0.00 4.58
121 122 2.290641 GGCTTTAGGTAATGTGGCGATG 59.709 50.000 0.00 0.00 0.00 3.84
122 123 2.290641 GCTTTAGGTAATGTGGCGATGG 59.709 50.000 0.00 0.00 0.00 3.51
123 124 2.631160 TTAGGTAATGTGGCGATGGG 57.369 50.000 0.00 0.00 0.00 4.00
124 125 1.502690 TAGGTAATGTGGCGATGGGT 58.497 50.000 0.00 0.00 0.00 4.51
125 126 0.623723 AGGTAATGTGGCGATGGGTT 59.376 50.000 0.00 0.00 0.00 4.11
126 127 1.841277 AGGTAATGTGGCGATGGGTTA 59.159 47.619 0.00 0.00 0.00 2.85
127 128 2.441750 AGGTAATGTGGCGATGGGTTAT 59.558 45.455 0.00 0.00 0.00 1.89
128 129 3.649023 AGGTAATGTGGCGATGGGTTATA 59.351 43.478 0.00 0.00 0.00 0.98
129 130 4.000988 GGTAATGTGGCGATGGGTTATAG 58.999 47.826 0.00 0.00 0.00 1.31
130 131 2.185004 ATGTGGCGATGGGTTATAGC 57.815 50.000 0.00 0.00 36.76 2.97
138 139 1.531748 TGGGTTATAGCCAGCAGCC 59.468 57.895 8.00 0.00 41.50 4.85
139 140 1.598130 GGGTTATAGCCAGCAGCCG 60.598 63.158 8.00 0.00 45.47 5.52
140 141 1.598130 GGTTATAGCCAGCAGCCGG 60.598 63.158 0.00 0.00 45.47 6.13
150 151 2.825836 GCAGCCGGCTGTGCTATT 60.826 61.111 46.58 16.67 45.24 1.73
151 152 1.523711 GCAGCCGGCTGTGCTATTA 60.524 57.895 46.58 0.00 45.24 0.98
152 153 1.095228 GCAGCCGGCTGTGCTATTAA 61.095 55.000 46.58 0.00 45.24 1.40
153 154 0.657840 CAGCCGGCTGTGCTATTAAC 59.342 55.000 42.09 3.28 36.81 2.01
154 155 0.463833 AGCCGGCTGTGCTATTAACC 60.464 55.000 32.33 0.00 37.28 2.85
155 156 0.463833 GCCGGCTGTGCTATTAACCT 60.464 55.000 22.15 0.00 0.00 3.50
156 157 2.017113 GCCGGCTGTGCTATTAACCTT 61.017 52.381 22.15 0.00 0.00 3.50
157 158 1.670811 CCGGCTGTGCTATTAACCTTG 59.329 52.381 0.00 0.00 0.00 3.61
158 159 1.064060 CGGCTGTGCTATTAACCTTGC 59.936 52.381 0.00 0.00 0.00 4.01
159 160 2.369394 GGCTGTGCTATTAACCTTGCT 58.631 47.619 0.00 0.00 0.00 3.91
160 161 2.356069 GGCTGTGCTATTAACCTTGCTC 59.644 50.000 0.00 0.00 0.00 4.26
161 162 3.274288 GCTGTGCTATTAACCTTGCTCT 58.726 45.455 0.00 0.00 0.00 4.09
162 163 3.691609 GCTGTGCTATTAACCTTGCTCTT 59.308 43.478 0.00 0.00 0.00 2.85
163 164 4.876107 GCTGTGCTATTAACCTTGCTCTTA 59.124 41.667 0.00 0.00 0.00 2.10
164 165 5.529060 GCTGTGCTATTAACCTTGCTCTTAT 59.471 40.000 0.00 0.00 0.00 1.73
165 166 6.038714 GCTGTGCTATTAACCTTGCTCTTATT 59.961 38.462 0.00 0.00 0.00 1.40
166 167 7.320443 TGTGCTATTAACCTTGCTCTTATTG 57.680 36.000 0.00 0.00 0.00 1.90
167 168 6.884295 TGTGCTATTAACCTTGCTCTTATTGT 59.116 34.615 0.00 0.00 0.00 2.71
168 169 8.044309 TGTGCTATTAACCTTGCTCTTATTGTA 58.956 33.333 0.00 0.00 0.00 2.41
169 170 8.336080 GTGCTATTAACCTTGCTCTTATTGTAC 58.664 37.037 0.00 0.00 0.00 2.90
170 171 8.265055 TGCTATTAACCTTGCTCTTATTGTACT 58.735 33.333 0.00 0.00 0.00 2.73
171 172 9.110502 GCTATTAACCTTGCTCTTATTGTACTT 57.889 33.333 0.00 0.00 0.00 2.24
173 174 5.629079 AACCTTGCTCTTATTGTACTTGC 57.371 39.130 0.00 0.00 0.00 4.01
174 175 4.911390 ACCTTGCTCTTATTGTACTTGCT 58.089 39.130 0.00 0.00 0.00 3.91
183 184 7.119262 GCTCTTATTGTACTTGCTCTTACCAAA 59.881 37.037 0.00 0.00 0.00 3.28
186 187 6.560253 ATTGTACTTGCTCTTACCAAACAG 57.440 37.500 0.00 0.00 0.00 3.16
191 192 0.605589 GCTCTTACCAAACAGGCCGT 60.606 55.000 0.00 0.00 43.14 5.68
220 224 7.803724 GTTACCAAATAACCTAATAGCCATCG 58.196 38.462 0.00 0.00 37.76 3.84
233 237 0.934436 GCCATCGCACAACACACAAC 60.934 55.000 0.00 0.00 34.03 3.32
234 238 0.380024 CCATCGCACAACACACAACA 59.620 50.000 0.00 0.00 0.00 3.33
236 240 2.543445 CCATCGCACAACACACAACAAT 60.543 45.455 0.00 0.00 0.00 2.71
238 242 4.286101 CATCGCACAACACACAACAATTA 58.714 39.130 0.00 0.00 0.00 1.40
239 243 3.686128 TCGCACAACACACAACAATTAC 58.314 40.909 0.00 0.00 0.00 1.89
240 244 3.375610 TCGCACAACACACAACAATTACT 59.624 39.130 0.00 0.00 0.00 2.24
242 246 4.041723 GCACAACACACAACAATTACTCC 58.958 43.478 0.00 0.00 0.00 3.85
243 247 4.278858 CACAACACACAACAATTACTCCG 58.721 43.478 0.00 0.00 0.00 4.63
244 248 3.942748 ACAACACACAACAATTACTCCGT 59.057 39.130 0.00 0.00 0.00 4.69
245 249 4.034742 ACAACACACAACAATTACTCCGTC 59.965 41.667 0.00 0.00 0.00 4.79
262 266 5.829924 ACTCCGTCCGTTCCTAAATATAAGA 59.170 40.000 0.00 0.00 0.00 2.10
299 303 9.746457 ATATCAATACAGACTATCTACAGAGCA 57.254 33.333 0.00 0.00 0.00 4.26
300 304 7.881775 TCAATACAGACTATCTACAGAGCAA 57.118 36.000 0.00 0.00 0.00 3.91
301 305 8.293699 TCAATACAGACTATCTACAGAGCAAA 57.706 34.615 0.00 0.00 0.00 3.68
302 306 8.749354 TCAATACAGACTATCTACAGAGCAAAA 58.251 33.333 0.00 0.00 0.00 2.44
303 307 9.539825 CAATACAGACTATCTACAGAGCAAAAT 57.460 33.333 0.00 0.00 0.00 1.82
304 308 9.539825 AATACAGACTATCTACAGAGCAAAATG 57.460 33.333 0.00 0.00 0.00 2.32
305 309 7.175347 ACAGACTATCTACAGAGCAAAATGA 57.825 36.000 0.00 0.00 0.00 2.57
306 310 7.615403 ACAGACTATCTACAGAGCAAAATGAA 58.385 34.615 0.00 0.00 0.00 2.57
307 311 8.097038 ACAGACTATCTACAGAGCAAAATGAAA 58.903 33.333 0.00 0.00 0.00 2.69
308 312 8.386606 CAGACTATCTACAGAGCAAAATGAAAC 58.613 37.037 0.00 0.00 0.00 2.78
309 313 8.097038 AGACTATCTACAGAGCAAAATGAAACA 58.903 33.333 0.00 0.00 0.00 2.83
310 314 8.261492 ACTATCTACAGAGCAAAATGAAACAG 57.739 34.615 0.00 0.00 0.00 3.16
323 327 8.857216 GCAAAATGAAACAGAGAGAATACAATG 58.143 33.333 0.00 0.00 0.00 2.82
384 393 4.624336 TGCATAACACGAAACAACACTT 57.376 36.364 0.00 0.00 0.00 3.16
394 403 6.027131 CACGAAACAACACTTCATGAGAAAA 58.973 36.000 0.00 0.00 32.35 2.29
398 407 6.833342 AACAACACTTCATGAGAAAATTGC 57.167 33.333 0.00 0.00 32.35 3.56
437 446 1.438651 TGAAAATGAAGCCGGAGTCG 58.561 50.000 5.05 0.00 0.00 4.18
439 448 1.393883 GAAAATGAAGCCGGAGTCGAC 59.606 52.381 5.05 7.70 39.00 4.20
441 450 0.173708 AATGAAGCCGGAGTCGACTC 59.826 55.000 32.96 32.96 42.14 3.36
478 487 6.801575 TGGACACAATTCAGGAAGTTTTAAC 58.198 36.000 0.00 0.00 0.00 2.01
514 523 5.246307 AGGATGTAAAGCTGTGTAGAAACC 58.754 41.667 0.00 0.00 0.00 3.27
550 559 5.878332 ACTATCTCGTGATCAGCATCTAG 57.122 43.478 2.72 0.00 34.32 2.43
566 576 4.202264 GCATCTAGAATCCGAAAGAGGGAA 60.202 45.833 0.00 0.00 37.07 3.97
647 657 2.871795 TATGAGCACGGGGAGGAGCA 62.872 60.000 0.00 0.00 0.00 4.26
743 754 0.735978 CCGTGCTACATCAACGAGCA 60.736 55.000 0.00 0.00 43.74 4.26
848 860 1.355381 TGTTCCATGTGCATCTTCCCT 59.645 47.619 0.00 0.00 0.00 4.20
954 966 0.798776 CCGCTCGACATTTGCTTTCT 59.201 50.000 0.00 0.00 0.00 2.52
1302 1325 2.154854 TGCTCAAGACCAACTTCGAG 57.845 50.000 0.00 0.00 36.61 4.04
1905 1928 1.291877 GCGACATCGTGGTCAGCTTT 61.292 55.000 2.85 0.00 42.22 3.51
2142 2658 4.241555 GCGGATGTGCTCCCGGAT 62.242 66.667 0.73 0.00 45.42 4.18
2370 2886 0.534412 CTGAGATGAAGGCGGTCAGT 59.466 55.000 0.62 0.00 31.77 3.41
2530 3046 5.584649 TCGGGTGCAGACTTCAAATAATTAG 59.415 40.000 0.00 0.00 0.00 1.73
2654 3184 5.782893 TCACCGTGATTTCCAAAATTTCT 57.217 34.783 0.00 0.00 0.00 2.52
2663 3193 9.815936 GTGATTTCCAAAATTTCTTGCTTAATG 57.184 29.630 0.00 0.00 0.00 1.90
2716 3246 0.608640 AAGGTTACAGGTCTCAGGCG 59.391 55.000 0.00 0.00 0.00 5.52
2722 3252 0.889306 ACAGGTCTCAGGCGTCTAAC 59.111 55.000 0.00 0.00 0.00 2.34
2727 3257 1.671845 GTCTCAGGCGTCTAACGAGAT 59.328 52.381 8.59 0.00 46.05 2.75
2736 3266 3.181533 GCGTCTAACGAGATCAAAACACC 60.182 47.826 3.28 0.00 46.05 4.16
2786 3320 6.148735 TCATAGACCGAAATCCTCCCTATA 57.851 41.667 0.00 0.00 0.00 1.31
2790 3324 5.265989 AGACCGAAATCCTCCCTATATCTC 58.734 45.833 0.00 0.00 0.00 2.75
2791 3325 5.015817 AGACCGAAATCCTCCCTATATCTCT 59.984 44.000 0.00 0.00 0.00 3.10
2834 3368 6.867550 TCTGACTGAGATACGTTTCATCATT 58.132 36.000 8.74 4.05 0.00 2.57
2840 3374 7.063898 ACTGAGATACGTTTCATCATTCAAGTG 59.936 37.037 8.74 0.15 0.00 3.16
2841 3375 6.111768 AGATACGTTTCATCATTCAAGTGC 57.888 37.500 8.74 0.00 0.00 4.40
2843 3377 4.410492 ACGTTTCATCATTCAAGTGCTC 57.590 40.909 0.00 0.00 0.00 4.26
2844 3378 3.189287 ACGTTTCATCATTCAAGTGCTCC 59.811 43.478 0.00 0.00 0.00 4.70
2845 3379 3.426695 CGTTTCATCATTCAAGTGCTCCC 60.427 47.826 0.00 0.00 0.00 4.30
2847 3381 3.272574 TCATCATTCAAGTGCTCCCTC 57.727 47.619 0.00 0.00 0.00 4.30
2848 3382 2.092753 TCATCATTCAAGTGCTCCCTCC 60.093 50.000 0.00 0.00 0.00 4.30
2849 3383 0.250234 TCATTCAAGTGCTCCCTCCG 59.750 55.000 0.00 0.00 0.00 4.63
2851 3385 0.693049 ATTCAAGTGCTCCCTCCGTT 59.307 50.000 0.00 0.00 0.00 4.44
2852 3386 0.034896 TTCAAGTGCTCCCTCCGTTC 59.965 55.000 0.00 0.00 0.00 3.95
2853 3387 1.376037 CAAGTGCTCCCTCCGTTCC 60.376 63.158 0.00 0.00 0.00 3.62
2854 3388 2.943978 AAGTGCTCCCTCCGTTCCG 61.944 63.158 0.00 0.00 0.00 4.30
2855 3389 3.692406 GTGCTCCCTCCGTTCCGT 61.692 66.667 0.00 0.00 0.00 4.69
2858 3392 0.974010 TGCTCCCTCCGTTCCGTAAT 60.974 55.000 0.00 0.00 0.00 1.89
2859 3393 0.177373 GCTCCCTCCGTTCCGTAATT 59.823 55.000 0.00 0.00 0.00 1.40
2860 3394 1.805495 GCTCCCTCCGTTCCGTAATTC 60.805 57.143 0.00 0.00 0.00 2.17
2861 3395 1.755380 CTCCCTCCGTTCCGTAATTCT 59.245 52.381 0.00 0.00 0.00 2.40
2862 3396 1.753073 TCCCTCCGTTCCGTAATTCTC 59.247 52.381 0.00 0.00 0.00 2.87
2863 3397 1.535437 CCCTCCGTTCCGTAATTCTCG 60.535 57.143 0.00 0.00 0.00 4.04
2865 3399 2.448219 CTCCGTTCCGTAATTCTCGTC 58.552 52.381 3.09 0.00 0.00 4.20
2866 3400 1.186030 CCGTTCCGTAATTCTCGTCG 58.814 55.000 0.00 0.00 0.00 5.12
2867 3401 1.466360 CCGTTCCGTAATTCTCGTCGT 60.466 52.381 0.00 0.00 0.00 4.34
2868 3402 1.576246 CGTTCCGTAATTCTCGTCGTG 59.424 52.381 0.00 0.00 0.00 4.35
2869 3403 1.916000 GTTCCGTAATTCTCGTCGTGG 59.084 52.381 0.00 0.00 0.00 4.94
2870 3404 1.167851 TCCGTAATTCTCGTCGTGGT 58.832 50.000 0.00 0.00 0.00 4.16
2871 3405 1.541147 TCCGTAATTCTCGTCGTGGTT 59.459 47.619 0.00 0.00 0.00 3.67
2872 3406 2.030007 TCCGTAATTCTCGTCGTGGTTT 60.030 45.455 0.00 0.00 0.00 3.27
2873 3407 2.733026 CCGTAATTCTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 0.00 2.43
2875 3409 4.030977 CCGTAATTCTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 0.00 1.85
2876 3410 4.618489 CGTAATTCTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 0.00 2.24
2879 3413 3.713858 TCTCGTCGTGGTTTTAGTTCA 57.286 42.857 0.00 0.00 0.00 3.18
2881 3415 4.431809 TCTCGTCGTGGTTTTAGTTCAAA 58.568 39.130 0.00 0.00 0.00 2.69
2882 3416 5.051816 TCTCGTCGTGGTTTTAGTTCAAAT 58.948 37.500 0.00 0.00 0.00 2.32
2884 3418 5.503498 TCGTCGTGGTTTTAGTTCAAATTG 58.497 37.500 0.00 0.00 0.00 2.32
2885 3419 5.293814 TCGTCGTGGTTTTAGTTCAAATTGA 59.706 36.000 0.00 0.00 0.00 2.57
2886 3420 5.966503 CGTCGTGGTTTTAGTTCAAATTGAA 59.033 36.000 4.03 4.03 33.32 2.69
2913 3447 2.533266 CATGACTATGGGACGAAGGG 57.467 55.000 0.00 0.00 0.00 3.95
2914 3448 2.039418 CATGACTATGGGACGAAGGGA 58.961 52.381 0.00 0.00 0.00 4.20
2915 3449 1.776662 TGACTATGGGACGAAGGGAG 58.223 55.000 0.00 0.00 0.00 4.30
2916 3450 1.006758 TGACTATGGGACGAAGGGAGT 59.993 52.381 0.00 0.00 0.00 3.85
2917 3451 2.242965 TGACTATGGGACGAAGGGAGTA 59.757 50.000 0.00 0.00 0.00 2.59
2918 3452 3.117246 TGACTATGGGACGAAGGGAGTAT 60.117 47.826 0.00 0.00 0.00 2.12
2919 3453 3.896272 GACTATGGGACGAAGGGAGTATT 59.104 47.826 0.00 0.00 0.00 1.89
2921 3455 5.461327 ACTATGGGACGAAGGGAGTATTTA 58.539 41.667 0.00 0.00 0.00 1.40
2922 3456 4.957684 ATGGGACGAAGGGAGTATTTAG 57.042 45.455 0.00 0.00 0.00 1.85
2923 3457 3.716431 TGGGACGAAGGGAGTATTTAGT 58.284 45.455 0.00 0.00 0.00 2.24
2924 3458 4.870636 TGGGACGAAGGGAGTATTTAGTA 58.129 43.478 0.00 0.00 0.00 1.82
2959 3607 1.325355 GCCTTGGGGATGATGACATG 58.675 55.000 0.00 0.00 36.82 3.21
3020 3671 9.991906 AAATCATTTACCTTAGCGCTAGTAATA 57.008 29.630 22.53 16.05 0.00 0.98
3051 3704 5.358298 AGCATTTTTCTCTTACGTTCACC 57.642 39.130 0.00 0.00 0.00 4.02
3063 3716 2.634600 ACGTTCACCAAAGCAGTTACA 58.365 42.857 0.00 0.00 0.00 2.41
3079 3732 8.848474 AGCAGTTACATGTAAGATTTTGTACT 57.152 30.769 18.56 6.87 0.00 2.73
3091 3744 6.481954 AGATTTTGTACTGAACCGATGAAC 57.518 37.500 0.00 0.00 0.00 3.18
3096 3749 4.055360 TGTACTGAACCGATGAACACAAG 58.945 43.478 0.00 0.00 0.00 3.16
3182 3835 6.768381 CCCTGAAGATCAAGGGTTTCTAATAC 59.232 42.308 16.42 0.00 33.17 1.89
3201 4168 8.003044 TCTAATACCTTAAGAATCCTTCCTCGA 58.997 37.037 3.36 0.00 33.94 4.04
3207 4174 7.290248 ACCTTAAGAATCCTTCCTCGATATGAA 59.710 37.037 3.36 0.00 33.94 2.57
3233 4201 8.575649 AAGTAAATATCAAATCCGTGGAGTTT 57.424 30.769 0.00 0.00 29.47 2.66
3253 4221 6.357367 AGTTTTCCTACGAGCCAATGATTAT 58.643 36.000 0.00 0.00 0.00 1.28
3258 4226 5.540337 TCCTACGAGCCAATGATTATCTCTT 59.460 40.000 0.00 0.00 0.00 2.85
3267 4235 6.510799 GCCAATGATTATCTCTTCACTCAACG 60.511 42.308 0.00 0.00 0.00 4.10
3277 4245 5.293569 TCTCTTCACTCAACGAAAAACCTTC 59.706 40.000 0.00 0.00 0.00 3.46
3278 4246 4.334481 TCTTCACTCAACGAAAAACCTTCC 59.666 41.667 0.00 0.00 0.00 3.46
3280 4248 3.625764 TCACTCAACGAAAAACCTTCCTG 59.374 43.478 0.00 0.00 0.00 3.86
3325 4296 2.086869 TGCCAATCTCACTAGCTTTGC 58.913 47.619 0.00 0.00 0.00 3.68
3357 4674 7.331687 GCAAAGATTAATTACTGTGTTTGGCAT 59.668 33.333 12.34 0.00 0.00 4.40
3423 4741 6.367695 GCACAATAAAAGTGTAAAATGGGGTC 59.632 38.462 0.00 0.00 39.17 4.46
3444 4763 5.179555 GGTCGCATTTATGAGGAATAAGGAC 59.820 44.000 0.00 0.00 32.30 3.85
3446 4765 4.152402 CGCATTTATGAGGAATAAGGACCG 59.848 45.833 0.00 0.00 32.30 4.79
3462 4781 2.779506 GACCGGATCCAAAGTTTCACT 58.220 47.619 9.46 0.00 0.00 3.41
3463 4782 3.934068 GACCGGATCCAAAGTTTCACTA 58.066 45.455 9.46 0.00 0.00 2.74
3464 4783 4.514401 GACCGGATCCAAAGTTTCACTAT 58.486 43.478 9.46 0.00 0.00 2.12
3465 4784 4.918588 ACCGGATCCAAAGTTTCACTATT 58.081 39.130 9.46 0.00 0.00 1.73
3466 4785 5.321927 ACCGGATCCAAAGTTTCACTATTT 58.678 37.500 9.46 0.00 0.00 1.40
3467 4786 5.183140 ACCGGATCCAAAGTTTCACTATTTG 59.817 40.000 9.46 0.00 34.45 2.32
3468 4787 5.095490 CGGATCCAAAGTTTCACTATTTGC 58.905 41.667 13.41 0.00 33.55 3.68
3469 4788 5.335583 CGGATCCAAAGTTTCACTATTTGCA 60.336 40.000 13.41 0.00 33.55 4.08
3470 4789 6.625740 CGGATCCAAAGTTTCACTATTTGCAT 60.626 38.462 13.41 0.00 33.55 3.96
3471 4790 6.753744 GGATCCAAAGTTTCACTATTTGCATC 59.246 38.462 6.95 0.00 32.66 3.91
3472 4791 6.899393 TCCAAAGTTTCACTATTTGCATCT 57.101 33.333 0.00 0.00 33.55 2.90
3473 4792 6.913170 TCCAAAGTTTCACTATTTGCATCTC 58.087 36.000 0.00 0.00 33.55 2.75
3474 4793 6.716628 TCCAAAGTTTCACTATTTGCATCTCT 59.283 34.615 0.00 0.00 33.55 3.10
3475 4794 7.025963 CCAAAGTTTCACTATTTGCATCTCTC 58.974 38.462 0.00 0.00 33.55 3.20
3476 4795 6.749923 AAGTTTCACTATTTGCATCTCTCC 57.250 37.500 0.00 0.00 0.00 3.71
3477 4796 5.809001 AGTTTCACTATTTGCATCTCTCCA 58.191 37.500 0.00 0.00 0.00 3.86
3478 4797 6.240894 AGTTTCACTATTTGCATCTCTCCAA 58.759 36.000 0.00 0.00 0.00 3.53
3479 4798 6.716628 AGTTTCACTATTTGCATCTCTCCAAA 59.283 34.615 0.00 0.00 35.64 3.28
3480 4799 6.500684 TTCACTATTTGCATCTCTCCAAAC 57.499 37.500 0.00 0.00 34.18 2.93
3481 4800 5.809001 TCACTATTTGCATCTCTCCAAACT 58.191 37.500 0.00 0.00 34.18 2.66
3482 4801 6.946340 TCACTATTTGCATCTCTCCAAACTA 58.054 36.000 0.00 0.00 34.18 2.24
3483 4802 6.818644 TCACTATTTGCATCTCTCCAAACTAC 59.181 38.462 0.00 0.00 34.18 2.73
3484 4803 6.595326 CACTATTTGCATCTCTCCAAACTACA 59.405 38.462 0.00 0.00 34.18 2.74
3485 4804 7.281774 CACTATTTGCATCTCTCCAAACTACAT 59.718 37.037 0.00 0.00 34.18 2.29
3486 4805 8.486210 ACTATTTGCATCTCTCCAAACTACATA 58.514 33.333 0.00 0.00 34.18 2.29
3487 4806 7.798596 ATTTGCATCTCTCCAAACTACATAG 57.201 36.000 0.00 0.00 34.18 2.23
3488 4807 5.282055 TGCATCTCTCCAAACTACATAGG 57.718 43.478 0.00 0.00 0.00 2.57
3489 4808 4.061596 GCATCTCTCCAAACTACATAGGC 58.938 47.826 0.00 0.00 0.00 3.93
3490 4809 4.443457 GCATCTCTCCAAACTACATAGGCA 60.443 45.833 0.00 0.00 0.00 4.75
3491 4810 5.744300 GCATCTCTCCAAACTACATAGGCAT 60.744 44.000 0.00 0.00 0.00 4.40
3492 4811 6.519043 GCATCTCTCCAAACTACATAGGCATA 60.519 42.308 0.00 0.00 0.00 3.14
3493 4812 6.656632 TCTCTCCAAACTACATAGGCATAG 57.343 41.667 0.00 0.00 0.00 2.23
3494 4813 6.136857 TCTCTCCAAACTACATAGGCATAGT 58.863 40.000 0.00 0.00 32.93 2.12
3495 4814 6.040955 TCTCTCCAAACTACATAGGCATAGTG 59.959 42.308 0.00 0.00 31.93 2.74
3496 4815 5.897250 TCTCCAAACTACATAGGCATAGTGA 59.103 40.000 0.00 0.00 31.93 3.41
3497 4816 6.382859 TCTCCAAACTACATAGGCATAGTGAA 59.617 38.462 0.00 0.00 31.93 3.18
3498 4817 6.346096 TCCAAACTACATAGGCATAGTGAAC 58.654 40.000 0.00 0.00 31.93 3.18
3499 4818 6.070481 TCCAAACTACATAGGCATAGTGAACA 60.070 38.462 0.00 0.00 31.93 3.18
3500 4819 6.037172 CCAAACTACATAGGCATAGTGAACAC 59.963 42.308 0.00 0.00 31.93 3.32
3501 4820 5.932619 ACTACATAGGCATAGTGAACACA 57.067 39.130 7.68 0.00 30.34 3.72
3502 4821 6.294361 ACTACATAGGCATAGTGAACACAA 57.706 37.500 7.68 0.00 30.34 3.33
3503 4822 6.889198 ACTACATAGGCATAGTGAACACAAT 58.111 36.000 7.68 0.00 30.34 2.71
3504 4823 8.018537 ACTACATAGGCATAGTGAACACAATA 57.981 34.615 7.68 0.00 30.34 1.90
3505 4824 8.482943 ACTACATAGGCATAGTGAACACAATAA 58.517 33.333 7.68 0.00 30.34 1.40
3506 4825 9.494271 CTACATAGGCATAGTGAACACAATAAT 57.506 33.333 7.68 0.00 0.00 1.28
3507 4826 8.383318 ACATAGGCATAGTGAACACAATAATC 57.617 34.615 7.68 0.00 0.00 1.75
3508 4827 7.992608 ACATAGGCATAGTGAACACAATAATCA 59.007 33.333 7.68 0.00 0.00 2.57
3509 4828 8.839343 CATAGGCATAGTGAACACAATAATCAA 58.161 33.333 7.68 0.00 0.00 2.57
3510 4829 7.701539 AGGCATAGTGAACACAATAATCAAA 57.298 32.000 7.68 0.00 0.00 2.69
3511 4830 7.538575 AGGCATAGTGAACACAATAATCAAAC 58.461 34.615 7.68 0.00 0.00 2.93
3512 4831 7.176515 AGGCATAGTGAACACAATAATCAAACA 59.823 33.333 7.68 0.00 0.00 2.83
3513 4832 7.273381 GGCATAGTGAACACAATAATCAAACAC 59.727 37.037 7.68 0.00 0.00 3.32
3514 4833 7.007367 GCATAGTGAACACAATAATCAAACACG 59.993 37.037 7.68 0.00 0.00 4.49
3515 4834 5.212194 AGTGAACACAATAATCAAACACGC 58.788 37.500 7.68 0.00 0.00 5.34
3516 4835 4.973051 GTGAACACAATAATCAAACACGCA 59.027 37.500 0.00 0.00 0.00 5.24
3517 4836 5.629020 GTGAACACAATAATCAAACACGCAT 59.371 36.000 0.00 0.00 0.00 4.73
3518 4837 6.799441 GTGAACACAATAATCAAACACGCATA 59.201 34.615 0.00 0.00 0.00 3.14
3519 4838 7.484641 GTGAACACAATAATCAAACACGCATAT 59.515 33.333 0.00 0.00 0.00 1.78
3520 4839 8.669243 TGAACACAATAATCAAACACGCATATA 58.331 29.630 0.00 0.00 0.00 0.86
3521 4840 9.158364 GAACACAATAATCAAACACGCATATAG 57.842 33.333 0.00 0.00 0.00 1.31
3522 4841 8.432110 ACACAATAATCAAACACGCATATAGA 57.568 30.769 0.00 0.00 0.00 1.98
3523 4842 8.335356 ACACAATAATCAAACACGCATATAGAC 58.665 33.333 0.00 0.00 0.00 2.59
3524 4843 8.334632 CACAATAATCAAACACGCATATAGACA 58.665 33.333 0.00 0.00 0.00 3.41
3525 4844 8.335356 ACAATAATCAAACACGCATATAGACAC 58.665 33.333 0.00 0.00 0.00 3.67
3526 4845 8.551205 CAATAATCAAACACGCATATAGACACT 58.449 33.333 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.667007 TGCATGTCTATATGACTTGTTGTG 57.333 37.500 15.72 0.00 46.39 3.33
3 4 7.870509 ATTGCATGTCTATATGACTTGTTGT 57.129 32.000 15.72 0.00 46.39 3.32
4 5 8.186163 ACAATTGCATGTCTATATGACTTGTTG 58.814 33.333 5.05 14.54 46.39 3.33
5 6 8.284945 ACAATTGCATGTCTATATGACTTGTT 57.715 30.769 5.05 6.48 46.39 2.83
6 7 7.870509 ACAATTGCATGTCTATATGACTTGT 57.129 32.000 5.05 10.12 46.39 3.16
9 10 9.618890 ACTTAACAATTGCATGTCTATATGACT 57.381 29.630 5.05 0.00 45.54 3.41
10 11 9.655769 CACTTAACAATTGCATGTCTATATGAC 57.344 33.333 5.05 0.00 45.54 3.06
11 12 9.394767 ACACTTAACAATTGCATGTCTATATGA 57.605 29.630 5.05 0.00 31.81 2.15
16 17 9.891828 CTTAAACACTTAACAATTGCATGTCTA 57.108 29.630 5.05 0.00 31.81 2.59
17 18 8.413229 ACTTAAACACTTAACAATTGCATGTCT 58.587 29.630 5.05 0.00 31.81 3.41
18 19 8.574196 ACTTAAACACTTAACAATTGCATGTC 57.426 30.769 5.05 0.00 31.81 3.06
30 31 9.849166 GGCTGCAATAAATACTTAAACACTTAA 57.151 29.630 0.50 0.00 0.00 1.85
31 32 9.015367 TGGCTGCAATAAATACTTAAACACTTA 57.985 29.630 0.50 0.00 0.00 2.24
32 33 7.891561 TGGCTGCAATAAATACTTAAACACTT 58.108 30.769 0.50 0.00 0.00 3.16
33 34 7.393234 TCTGGCTGCAATAAATACTTAAACACT 59.607 33.333 0.50 0.00 0.00 3.55
34 35 7.484959 GTCTGGCTGCAATAAATACTTAAACAC 59.515 37.037 0.50 0.00 0.00 3.32
35 36 7.393234 AGTCTGGCTGCAATAAATACTTAAACA 59.607 33.333 0.50 0.00 0.00 2.83
36 37 7.762382 AGTCTGGCTGCAATAAATACTTAAAC 58.238 34.615 0.50 0.00 0.00 2.01
37 38 7.938140 AGTCTGGCTGCAATAAATACTTAAA 57.062 32.000 0.50 0.00 0.00 1.52
38 39 7.628366 GCAAGTCTGGCTGCAATAAATACTTAA 60.628 37.037 0.50 0.00 0.00 1.85
39 40 6.183360 GCAAGTCTGGCTGCAATAAATACTTA 60.183 38.462 0.50 0.00 0.00 2.24
40 41 5.393461 GCAAGTCTGGCTGCAATAAATACTT 60.393 40.000 0.50 0.00 0.00 2.24
41 42 4.096984 GCAAGTCTGGCTGCAATAAATACT 59.903 41.667 0.50 0.00 0.00 2.12
42 43 4.142403 TGCAAGTCTGGCTGCAATAAATAC 60.142 41.667 0.50 0.00 34.08 1.89
43 44 4.015764 TGCAAGTCTGGCTGCAATAAATA 58.984 39.130 0.50 0.00 34.08 1.40
44 45 2.827322 TGCAAGTCTGGCTGCAATAAAT 59.173 40.909 0.50 0.00 34.08 1.40
45 46 2.229543 CTGCAAGTCTGGCTGCAATAAA 59.770 45.455 0.50 0.00 36.81 1.40
46 47 1.814394 CTGCAAGTCTGGCTGCAATAA 59.186 47.619 0.50 0.00 36.81 1.40
47 48 1.456296 CTGCAAGTCTGGCTGCAATA 58.544 50.000 0.50 0.00 36.81 1.90
48 49 2.264124 CTGCAAGTCTGGCTGCAAT 58.736 52.632 0.50 0.00 36.81 3.56
49 50 3.754068 CTGCAAGTCTGGCTGCAA 58.246 55.556 0.50 0.00 36.81 4.08
52 53 1.900016 TTGGCTGCAAGTCTGGCTG 60.900 57.895 0.50 0.84 41.06 4.85
53 54 1.900498 GTTGGCTGCAAGTCTGGCT 60.900 57.895 0.50 0.00 41.06 4.75
54 55 2.647297 GTTGGCTGCAAGTCTGGC 59.353 61.111 0.50 0.00 41.06 4.85
55 56 0.036732 TAGGTTGGCTGCAAGTCTGG 59.963 55.000 0.50 0.00 41.06 3.86
56 57 1.808945 CTTAGGTTGGCTGCAAGTCTG 59.191 52.381 0.50 0.00 41.06 3.51
57 58 1.699634 TCTTAGGTTGGCTGCAAGTCT 59.300 47.619 0.50 0.00 41.06 3.24
58 59 2.079925 CTCTTAGGTTGGCTGCAAGTC 58.920 52.381 0.50 0.00 40.66 3.01
59 60 1.884067 GCTCTTAGGTTGGCTGCAAGT 60.884 52.381 0.50 0.00 35.30 3.16
60 61 0.807496 GCTCTTAGGTTGGCTGCAAG 59.193 55.000 0.50 0.00 0.00 4.01
61 62 0.609131 GGCTCTTAGGTTGGCTGCAA 60.609 55.000 0.50 0.00 0.00 4.08
62 63 1.002134 GGCTCTTAGGTTGGCTGCA 60.002 57.895 0.50 0.00 0.00 4.41
63 64 1.002134 TGGCTCTTAGGTTGGCTGC 60.002 57.895 0.00 0.00 0.00 5.25
64 65 1.028868 GCTGGCTCTTAGGTTGGCTG 61.029 60.000 0.00 0.00 0.00 4.85
65 66 1.301293 GCTGGCTCTTAGGTTGGCT 59.699 57.895 0.00 0.00 0.00 4.75
66 67 1.750780 GGCTGGCTCTTAGGTTGGC 60.751 63.158 0.00 0.00 0.00 4.52
67 68 1.204146 TAGGCTGGCTCTTAGGTTGG 58.796 55.000 7.13 0.00 0.00 3.77
68 69 3.209410 CAATAGGCTGGCTCTTAGGTTG 58.791 50.000 7.13 1.57 0.00 3.77
69 70 2.846827 ACAATAGGCTGGCTCTTAGGTT 59.153 45.455 7.13 0.00 0.00 3.50
70 71 2.482494 ACAATAGGCTGGCTCTTAGGT 58.518 47.619 7.13 0.00 0.00 3.08
71 72 4.564406 CCATACAATAGGCTGGCTCTTAGG 60.564 50.000 7.13 1.54 0.00 2.69
72 73 4.564406 CCCATACAATAGGCTGGCTCTTAG 60.564 50.000 7.13 2.58 0.00 2.18
73 74 3.327757 CCCATACAATAGGCTGGCTCTTA 59.672 47.826 7.13 0.00 0.00 2.10
74 75 2.107204 CCCATACAATAGGCTGGCTCTT 59.893 50.000 7.13 0.67 0.00 2.85
75 76 1.701847 CCCATACAATAGGCTGGCTCT 59.298 52.381 7.13 0.00 0.00 4.09
76 77 1.421646 ACCCATACAATAGGCTGGCTC 59.578 52.381 7.13 0.00 0.00 4.70
77 78 1.143684 CACCCATACAATAGGCTGGCT 59.856 52.381 9.28 9.28 0.00 4.75
78 79 1.142870 TCACCCATACAATAGGCTGGC 59.857 52.381 0.00 0.00 0.00 4.85
79 80 3.480470 CTTCACCCATACAATAGGCTGG 58.520 50.000 0.00 0.00 0.00 4.85
80 81 3.480470 CCTTCACCCATACAATAGGCTG 58.520 50.000 0.00 0.00 0.00 4.85
81 82 2.158608 GCCTTCACCCATACAATAGGCT 60.159 50.000 0.00 0.00 42.55 4.58
82 83 2.158608 AGCCTTCACCCATACAATAGGC 60.159 50.000 0.00 0.00 45.38 3.93
83 84 3.864789 AGCCTTCACCCATACAATAGG 57.135 47.619 0.00 0.00 0.00 2.57
84 85 5.765182 CCTAAAGCCTTCACCCATACAATAG 59.235 44.000 0.00 0.00 0.00 1.73
85 86 5.192923 ACCTAAAGCCTTCACCCATACAATA 59.807 40.000 0.00 0.00 0.00 1.90
86 87 4.017499 ACCTAAAGCCTTCACCCATACAAT 60.017 41.667 0.00 0.00 0.00 2.71
87 88 3.332485 ACCTAAAGCCTTCACCCATACAA 59.668 43.478 0.00 0.00 0.00 2.41
88 89 2.916934 ACCTAAAGCCTTCACCCATACA 59.083 45.455 0.00 0.00 0.00 2.29
89 90 3.646736 ACCTAAAGCCTTCACCCATAC 57.353 47.619 0.00 0.00 0.00 2.39
90 91 5.192923 ACATTACCTAAAGCCTTCACCCATA 59.807 40.000 0.00 0.00 0.00 2.74
91 92 4.017499 ACATTACCTAAAGCCTTCACCCAT 60.017 41.667 0.00 0.00 0.00 4.00
92 93 3.332485 ACATTACCTAAAGCCTTCACCCA 59.668 43.478 0.00 0.00 0.00 4.51
93 94 3.694566 CACATTACCTAAAGCCTTCACCC 59.305 47.826 0.00 0.00 0.00 4.61
94 95 3.694566 CCACATTACCTAAAGCCTTCACC 59.305 47.826 0.00 0.00 0.00 4.02
95 96 3.128764 GCCACATTACCTAAAGCCTTCAC 59.871 47.826 0.00 0.00 0.00 3.18
96 97 3.352648 GCCACATTACCTAAAGCCTTCA 58.647 45.455 0.00 0.00 0.00 3.02
97 98 2.354821 CGCCACATTACCTAAAGCCTTC 59.645 50.000 0.00 0.00 0.00 3.46
98 99 2.026636 TCGCCACATTACCTAAAGCCTT 60.027 45.455 0.00 0.00 0.00 4.35
99 100 1.557832 TCGCCACATTACCTAAAGCCT 59.442 47.619 0.00 0.00 0.00 4.58
100 101 2.032680 TCGCCACATTACCTAAAGCC 57.967 50.000 0.00 0.00 0.00 4.35
101 102 2.290641 CCATCGCCACATTACCTAAAGC 59.709 50.000 0.00 0.00 0.00 3.51
102 103 2.878406 CCCATCGCCACATTACCTAAAG 59.122 50.000 0.00 0.00 0.00 1.85
103 104 2.240160 ACCCATCGCCACATTACCTAAA 59.760 45.455 0.00 0.00 0.00 1.85
104 105 1.841277 ACCCATCGCCACATTACCTAA 59.159 47.619 0.00 0.00 0.00 2.69
105 106 1.502690 ACCCATCGCCACATTACCTA 58.497 50.000 0.00 0.00 0.00 3.08
106 107 0.623723 AACCCATCGCCACATTACCT 59.376 50.000 0.00 0.00 0.00 3.08
107 108 2.335316 TAACCCATCGCCACATTACC 57.665 50.000 0.00 0.00 0.00 2.85
108 109 3.435671 GCTATAACCCATCGCCACATTAC 59.564 47.826 0.00 0.00 0.00 1.89
109 110 3.558321 GGCTATAACCCATCGCCACATTA 60.558 47.826 0.00 0.00 43.48 1.90
110 111 2.504367 GCTATAACCCATCGCCACATT 58.496 47.619 0.00 0.00 0.00 2.71
111 112 1.271379 GGCTATAACCCATCGCCACAT 60.271 52.381 0.00 0.00 43.48 3.21
112 113 0.107831 GGCTATAACCCATCGCCACA 59.892 55.000 0.00 0.00 43.48 4.17
113 114 2.928416 GGCTATAACCCATCGCCAC 58.072 57.895 0.00 0.00 43.48 5.01
115 116 0.955919 GCTGGCTATAACCCATCGCC 60.956 60.000 0.00 0.00 44.12 5.54
116 117 0.250295 TGCTGGCTATAACCCATCGC 60.250 55.000 0.00 0.00 0.00 4.58
117 118 1.800805 CTGCTGGCTATAACCCATCG 58.199 55.000 0.00 0.00 0.00 3.84
118 119 1.528129 GCTGCTGGCTATAACCCATC 58.472 55.000 0.00 0.00 38.06 3.51
119 120 0.111253 GGCTGCTGGCTATAACCCAT 59.889 55.000 10.05 0.00 41.46 4.00
120 121 1.531748 GGCTGCTGGCTATAACCCA 59.468 57.895 10.05 0.00 41.46 4.51
121 122 1.598130 CGGCTGCTGGCTATAACCC 60.598 63.158 15.09 0.00 41.46 4.11
122 123 1.598130 CCGGCTGCTGGCTATAACC 60.598 63.158 15.72 0.00 41.46 2.85
123 124 4.049393 CCGGCTGCTGGCTATAAC 57.951 61.111 15.72 0.00 41.46 1.89
135 136 0.463833 GGTTAATAGCACAGCCGGCT 60.464 55.000 27.08 27.08 45.18 5.52
136 137 0.463833 AGGTTAATAGCACAGCCGGC 60.464 55.000 21.89 21.89 0.00 6.13
137 138 1.670811 CAAGGTTAATAGCACAGCCGG 59.329 52.381 0.00 0.00 0.00 6.13
138 139 1.064060 GCAAGGTTAATAGCACAGCCG 59.936 52.381 0.00 0.00 0.00 5.52
139 140 2.356069 GAGCAAGGTTAATAGCACAGCC 59.644 50.000 0.00 0.00 0.00 4.85
140 141 3.274288 AGAGCAAGGTTAATAGCACAGC 58.726 45.455 0.00 0.00 0.00 4.40
141 142 7.066284 ACAATAAGAGCAAGGTTAATAGCACAG 59.934 37.037 0.00 0.00 0.00 3.66
142 143 6.884295 ACAATAAGAGCAAGGTTAATAGCACA 59.116 34.615 0.00 0.00 0.00 4.57
143 144 7.321745 ACAATAAGAGCAAGGTTAATAGCAC 57.678 36.000 0.00 0.00 0.00 4.40
144 145 8.265055 AGTACAATAAGAGCAAGGTTAATAGCA 58.735 33.333 0.00 0.00 0.00 3.49
145 146 8.664211 AGTACAATAAGAGCAAGGTTAATAGC 57.336 34.615 0.00 0.00 0.00 2.97
147 148 8.889717 GCAAGTACAATAAGAGCAAGGTTAATA 58.110 33.333 0.00 0.00 0.00 0.98
148 149 7.611855 AGCAAGTACAATAAGAGCAAGGTTAAT 59.388 33.333 0.00 0.00 0.00 1.40
149 150 6.940298 AGCAAGTACAATAAGAGCAAGGTTAA 59.060 34.615 0.00 0.00 0.00 2.01
150 151 6.472887 AGCAAGTACAATAAGAGCAAGGTTA 58.527 36.000 0.00 0.00 0.00 2.85
151 152 5.316987 AGCAAGTACAATAAGAGCAAGGTT 58.683 37.500 0.00 0.00 0.00 3.50
152 153 4.911390 AGCAAGTACAATAAGAGCAAGGT 58.089 39.130 0.00 0.00 0.00 3.50
153 154 5.181748 AGAGCAAGTACAATAAGAGCAAGG 58.818 41.667 0.00 0.00 0.00 3.61
154 155 6.734104 AAGAGCAAGTACAATAAGAGCAAG 57.266 37.500 0.00 0.00 0.00 4.01
155 156 6.594159 GGTAAGAGCAAGTACAATAAGAGCAA 59.406 38.462 0.00 0.00 0.00 3.91
156 157 6.106673 GGTAAGAGCAAGTACAATAAGAGCA 58.893 40.000 0.00 0.00 0.00 4.26
157 158 6.106673 TGGTAAGAGCAAGTACAATAAGAGC 58.893 40.000 0.00 0.00 0.00 4.09
158 159 8.443937 GTTTGGTAAGAGCAAGTACAATAAGAG 58.556 37.037 0.00 0.00 36.89 2.85
159 160 7.934665 TGTTTGGTAAGAGCAAGTACAATAAGA 59.065 33.333 0.00 0.00 36.89 2.10
160 161 8.094798 TGTTTGGTAAGAGCAAGTACAATAAG 57.905 34.615 0.00 0.00 36.89 1.73
161 162 7.174253 CCTGTTTGGTAAGAGCAAGTACAATAA 59.826 37.037 0.00 0.00 36.89 1.40
162 163 6.653320 CCTGTTTGGTAAGAGCAAGTACAATA 59.347 38.462 0.00 0.00 36.89 1.90
163 164 5.473504 CCTGTTTGGTAAGAGCAAGTACAAT 59.526 40.000 0.00 0.00 36.89 2.71
164 165 4.819630 CCTGTTTGGTAAGAGCAAGTACAA 59.180 41.667 0.00 0.00 36.89 2.41
165 166 4.385825 CCTGTTTGGTAAGAGCAAGTACA 58.614 43.478 0.00 0.00 36.89 2.90
166 167 3.188667 GCCTGTTTGGTAAGAGCAAGTAC 59.811 47.826 0.00 0.00 36.89 2.73
167 168 3.408634 GCCTGTTTGGTAAGAGCAAGTA 58.591 45.455 0.00 0.00 36.89 2.24
168 169 2.230660 GCCTGTTTGGTAAGAGCAAGT 58.769 47.619 0.00 0.00 36.89 3.16
169 170 1.541588 GGCCTGTTTGGTAAGAGCAAG 59.458 52.381 0.00 0.00 36.89 4.01
170 171 1.616159 GGCCTGTTTGGTAAGAGCAA 58.384 50.000 0.00 0.00 38.35 3.91
171 172 0.605319 CGGCCTGTTTGGTAAGAGCA 60.605 55.000 0.00 0.00 38.35 4.26
172 173 0.605589 ACGGCCTGTTTGGTAAGAGC 60.606 55.000 0.00 0.00 38.35 4.09
173 174 1.892209 AACGGCCTGTTTGGTAAGAG 58.108 50.000 0.00 0.00 37.59 2.85
183 184 0.106619 TTGGTAACCAAACGGCCTGT 60.107 50.000 0.00 0.00 40.92 4.00
209 213 2.675844 GTGTGTTGTGCGATGGCTATTA 59.324 45.455 0.15 0.00 40.82 0.98
219 223 3.690422 AGTAATTGTTGTGTGTTGTGCG 58.310 40.909 0.00 0.00 0.00 5.34
220 224 4.041723 GGAGTAATTGTTGTGTGTTGTGC 58.958 43.478 0.00 0.00 0.00 4.57
239 243 6.016443 AGTCTTATATTTAGGAACGGACGGAG 60.016 42.308 0.00 0.00 0.00 4.63
240 244 5.829924 AGTCTTATATTTAGGAACGGACGGA 59.170 40.000 0.00 0.00 0.00 4.69
242 246 7.998753 AAAGTCTTATATTTAGGAACGGACG 57.001 36.000 0.00 0.00 0.00 4.79
275 279 8.470657 TTGCTCTGTAGATAGTCTGTATTGAT 57.529 34.615 0.00 0.00 0.00 2.57
282 286 8.386606 GTTTCATTTTGCTCTGTAGATAGTCTG 58.613 37.037 0.00 0.00 0.00 3.51
289 293 6.524734 TCTCTGTTTCATTTTGCTCTGTAGA 58.475 36.000 0.00 0.00 0.00 2.59
290 294 6.648310 TCTCTCTGTTTCATTTTGCTCTGTAG 59.352 38.462 0.00 0.00 0.00 2.74
294 298 7.663081 TGTATTCTCTCTGTTTCATTTTGCTCT 59.337 33.333 0.00 0.00 0.00 4.09
295 299 7.810658 TGTATTCTCTCTGTTTCATTTTGCTC 58.189 34.615 0.00 0.00 0.00 4.26
297 301 8.857216 CATTGTATTCTCTCTGTTTCATTTTGC 58.143 33.333 0.00 0.00 0.00 3.68
298 302 8.857216 GCATTGTATTCTCTCTGTTTCATTTTG 58.143 33.333 0.00 0.00 0.00 2.44
299 303 8.800332 AGCATTGTATTCTCTCTGTTTCATTTT 58.200 29.630 0.00 0.00 0.00 1.82
300 304 8.345724 AGCATTGTATTCTCTCTGTTTCATTT 57.654 30.769 0.00 0.00 0.00 2.32
301 305 7.934855 AGCATTGTATTCTCTCTGTTTCATT 57.065 32.000 0.00 0.00 0.00 2.57
302 306 9.270640 GATAGCATTGTATTCTCTCTGTTTCAT 57.729 33.333 0.00 0.00 0.00 2.57
303 307 8.481314 AGATAGCATTGTATTCTCTCTGTTTCA 58.519 33.333 0.00 0.00 0.00 2.69
304 308 8.885494 AGATAGCATTGTATTCTCTCTGTTTC 57.115 34.615 0.00 0.00 0.00 2.78
305 309 9.979578 CTAGATAGCATTGTATTCTCTCTGTTT 57.020 33.333 0.00 0.00 0.00 2.83
349 353 6.072783 TCGTGTTATGCAATTCTTCATTGTGA 60.073 34.615 0.00 0.00 43.95 3.58
359 368 5.685511 AGTGTTGTTTCGTGTTATGCAATTC 59.314 36.000 0.00 0.00 0.00 2.17
363 372 4.095036 TGAAGTGTTGTTTCGTGTTATGCA 59.905 37.500 0.00 0.00 0.00 3.96
384 393 2.415168 GGTCGACGCAATTTTCTCATGA 59.585 45.455 9.92 0.00 0.00 3.07
394 403 2.404215 GCATATAGTGGTCGACGCAAT 58.596 47.619 9.92 10.49 0.00 3.56
398 407 2.955607 TACGCATATAGTGGTCGACG 57.044 50.000 9.92 0.00 0.00 5.12
437 446 7.113658 TGTGTCCAATATCTTTCTAGGAGTC 57.886 40.000 0.00 0.00 0.00 3.36
439 448 8.970859 AATTGTGTCCAATATCTTTCTAGGAG 57.029 34.615 0.00 0.00 40.42 3.69
441 450 8.737168 TGAATTGTGTCCAATATCTTTCTAGG 57.263 34.615 0.00 0.00 40.42 3.02
445 454 7.630242 TCCTGAATTGTGTCCAATATCTTTC 57.370 36.000 0.00 0.00 40.42 2.62
478 487 5.066505 GCTTTACATCCTAAGAATGTGGGTG 59.933 44.000 0.00 0.00 37.93 4.61
514 523 4.106197 CGAGATAGTTTTCTGGGACTTCG 58.894 47.826 0.00 0.00 0.00 3.79
550 559 2.010497 GCTGTTCCCTCTTTCGGATTC 58.990 52.381 0.00 0.00 0.00 2.52
566 576 3.559384 GCTACTAAACCAGAAAGGGCTGT 60.559 47.826 0.00 0.00 43.89 4.40
579 589 1.316735 CGTGCTCGTTCGCTACTAAAC 59.683 52.381 0.00 0.00 0.00 2.01
633 643 2.748058 TTTTCTGCTCCTCCCCGTGC 62.748 60.000 0.00 0.00 0.00 5.34
647 657 8.800332 AGCACATGATTAAGACAATCTTTTTCT 58.200 29.630 0.00 0.00 37.89 2.52
743 754 1.822613 CAGCTCATGCCCGCTCAAT 60.823 57.895 1.69 0.00 40.80 2.57
848 860 6.949463 TGTCTATATATAATGTGGGTGGACGA 59.051 38.462 0.00 0.00 0.00 4.20
954 966 1.302112 TCGCACGAATGGCAAAGGA 60.302 52.632 0.00 0.00 0.00 3.36
2142 2658 1.675219 GCCTTCCACGTAGGTTCCA 59.325 57.895 4.81 0.00 39.02 3.53
2370 2886 4.314440 GCTCTCACCACGGCCACA 62.314 66.667 2.24 0.00 0.00 4.17
2530 3046 3.119495 AGCGCATCCCAATTTTTCACTAC 60.119 43.478 11.47 0.00 0.00 2.73
2613 3143 7.594758 CACGGTGAACATTAACTGATGAAAATT 59.405 33.333 0.74 0.00 0.00 1.82
2654 3184 8.518430 TCTGAAATTATAGCACCATTAAGCAA 57.482 30.769 0.00 0.00 0.00 3.91
2663 3193 7.432252 CGGTTGATTTTCTGAAATTATAGCACC 59.568 37.037 3.31 4.08 35.65 5.01
2716 3246 5.227908 TCAGGTGTTTTGATCTCGTTAGAC 58.772 41.667 0.00 0.00 33.57 2.59
2722 3252 6.073276 TGTGTTTATCAGGTGTTTTGATCTCG 60.073 38.462 0.00 0.00 36.68 4.04
2727 3257 8.661257 CGTATATGTGTTTATCAGGTGTTTTGA 58.339 33.333 0.00 0.00 0.00 2.69
2762 3296 3.235200 AGGGAGGATTTCGGTCTATGAG 58.765 50.000 0.00 0.00 0.00 2.90
2786 3320 5.009436 AGTGGAGTATCAGCCATAGAGAT 57.991 43.478 0.00 0.00 36.41 2.75
2790 3324 4.218200 CAGAGAGTGGAGTATCAGCCATAG 59.782 50.000 0.00 0.00 36.41 2.23
2791 3325 4.141158 TCAGAGAGTGGAGTATCAGCCATA 60.141 45.833 0.00 0.00 36.41 2.74
2834 3368 1.671742 GAACGGAGGGAGCACTTGA 59.328 57.895 0.00 0.00 0.00 3.02
2849 3383 1.916000 CCACGACGAGAATTACGGAAC 59.084 52.381 0.00 1.19 34.93 3.62
2851 3385 1.167851 ACCACGACGAGAATTACGGA 58.832 50.000 0.00 0.00 34.93 4.69
2852 3386 1.986698 AACCACGACGAGAATTACGG 58.013 50.000 0.00 0.00 34.93 4.02
2853 3387 4.618489 ACTAAAACCACGACGAGAATTACG 59.382 41.667 0.00 3.51 0.00 3.18
2854 3388 6.144402 TGAACTAAAACCACGACGAGAATTAC 59.856 38.462 0.00 0.00 0.00 1.89
2855 3389 6.215121 TGAACTAAAACCACGACGAGAATTA 58.785 36.000 0.00 0.00 0.00 1.40
2858 3392 4.044336 TGAACTAAAACCACGACGAGAA 57.956 40.909 0.00 0.00 0.00 2.87
2859 3393 3.713858 TGAACTAAAACCACGACGAGA 57.286 42.857 0.00 0.00 0.00 4.04
2860 3394 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2861 3395 5.293814 TCAATTTGAACTAAAACCACGACGA 59.706 36.000 0.00 0.00 0.00 4.20
2862 3396 5.503498 TCAATTTGAACTAAAACCACGACG 58.497 37.500 0.00 0.00 0.00 5.12
2894 3428 2.036475 CTCCCTTCGTCCCATAGTCATG 59.964 54.545 0.00 0.00 0.00 3.07
2898 3432 3.614568 ATACTCCCTTCGTCCCATAGT 57.385 47.619 0.00 0.00 0.00 2.12
2900 3434 5.461327 ACTAAATACTCCCTTCGTCCCATA 58.539 41.667 0.00 0.00 0.00 2.74
2901 3435 4.296056 ACTAAATACTCCCTTCGTCCCAT 58.704 43.478 0.00 0.00 0.00 4.00
2902 3436 3.716431 ACTAAATACTCCCTTCGTCCCA 58.284 45.455 0.00 0.00 0.00 4.37
2903 3437 4.892345 ACTACTAAATACTCCCTTCGTCCC 59.108 45.833 0.00 0.00 0.00 4.46
2904 3438 7.573968 TTACTACTAAATACTCCCTTCGTCC 57.426 40.000 0.00 0.00 0.00 4.79
2905 3439 9.295214 GTTTTACTACTAAATACTCCCTTCGTC 57.705 37.037 0.00 0.00 0.00 4.20
2907 3441 9.643693 TTGTTTTACTACTAAATACTCCCTTCG 57.356 33.333 0.00 0.00 0.00 3.79
2921 3455 8.311109 CCCAAGGCAATATTTTGTTTTACTACT 58.689 33.333 0.00 0.00 35.17 2.57
2922 3456 7.547722 CCCCAAGGCAATATTTTGTTTTACTAC 59.452 37.037 0.00 0.00 35.17 2.73
2923 3457 7.455008 TCCCCAAGGCAATATTTTGTTTTACTA 59.545 33.333 0.00 0.00 35.17 1.82
2924 3458 6.271159 TCCCCAAGGCAATATTTTGTTTTACT 59.729 34.615 0.00 0.00 35.17 2.24
2959 3607 9.088512 TCGAGAAGAAGTTATTTTATGAAGAGC 57.911 33.333 0.00 0.00 0.00 4.09
2994 3643 8.904099 ATTACTAGCGCTAAGGTAAATGATTT 57.096 30.769 24.51 10.90 31.75 2.17
3020 3671 8.349983 ACGTAAGAGAAAAATGCTTGTATTTGT 58.650 29.630 0.00 0.00 43.62 2.83
3051 3704 8.801715 ACAAAATCTTACATGTAACTGCTTTG 57.198 30.769 14.35 19.29 0.00 2.77
3063 3716 7.822334 TCATCGGTTCAGTACAAAATCTTACAT 59.178 33.333 0.00 0.00 0.00 2.29
3079 3732 3.186702 TCACTTGTGTTCATCGGTTCA 57.813 42.857 0.46 0.00 0.00 3.18
3091 3744 6.459298 GGGATATCAGAAAGCAATCACTTGTG 60.459 42.308 4.83 0.00 34.69 3.33
3096 3749 4.518211 CCAGGGATATCAGAAAGCAATCAC 59.482 45.833 4.83 0.00 0.00 3.06
3182 3835 7.233389 TCATATCGAGGAAGGATTCTTAAGG 57.767 40.000 1.85 0.00 46.56 2.69
3207 4174 8.575649 AACTCCACGGATTTGATATTTACTTT 57.424 30.769 0.00 0.00 0.00 2.66
3233 4201 5.540337 AGAGATAATCATTGGCTCGTAGGAA 59.460 40.000 0.00 0.00 0.00 3.36
3253 4221 4.766375 AGGTTTTTCGTTGAGTGAAGAGA 58.234 39.130 0.00 0.00 0.00 3.10
3258 4226 3.625764 CAGGAAGGTTTTTCGTTGAGTGA 59.374 43.478 0.00 0.00 0.00 3.41
3280 4248 7.930332 AACTTCACTAGACTAAGTTGGGGACC 61.930 46.154 15.88 0.00 40.85 4.46
3399 4717 6.584563 CGACCCCATTTTACACTTTTATTGTG 59.415 38.462 0.00 0.00 40.87 3.33
3416 4734 1.774254 TCCTCATAAATGCGACCCCAT 59.226 47.619 0.00 0.00 0.00 4.00
3423 4741 4.152402 CGGTCCTTATTCCTCATAAATGCG 59.848 45.833 0.00 0.00 0.00 4.73
3455 4774 6.500684 TTGGAGAGATGCAAATAGTGAAAC 57.499 37.500 0.00 0.00 0.00 2.78
3456 4775 6.716628 AGTTTGGAGAGATGCAAATAGTGAAA 59.283 34.615 0.00 0.00 0.00 2.69
3457 4776 6.240894 AGTTTGGAGAGATGCAAATAGTGAA 58.759 36.000 0.00 0.00 0.00 3.18
3458 4777 5.809001 AGTTTGGAGAGATGCAAATAGTGA 58.191 37.500 0.00 0.00 0.00 3.41
3459 4778 6.595326 TGTAGTTTGGAGAGATGCAAATAGTG 59.405 38.462 0.00 0.00 0.00 2.74
3460 4779 6.711277 TGTAGTTTGGAGAGATGCAAATAGT 58.289 36.000 0.00 0.00 0.00 2.12
3461 4780 7.798596 ATGTAGTTTGGAGAGATGCAAATAG 57.201 36.000 0.00 0.00 0.00 1.73
3462 4781 7.933577 CCTATGTAGTTTGGAGAGATGCAAATA 59.066 37.037 0.00 0.00 0.00 1.40
3463 4782 6.769822 CCTATGTAGTTTGGAGAGATGCAAAT 59.230 38.462 0.00 0.00 0.00 2.32
3464 4783 6.115446 CCTATGTAGTTTGGAGAGATGCAAA 58.885 40.000 0.00 0.00 0.00 3.68
3465 4784 5.674525 CCTATGTAGTTTGGAGAGATGCAA 58.325 41.667 0.00 0.00 0.00 4.08
3466 4785 4.443457 GCCTATGTAGTTTGGAGAGATGCA 60.443 45.833 0.00 0.00 0.00 3.96
3467 4786 4.061596 GCCTATGTAGTTTGGAGAGATGC 58.938 47.826 0.00 0.00 0.00 3.91
3468 4787 5.282055 TGCCTATGTAGTTTGGAGAGATG 57.718 43.478 0.00 0.00 0.00 2.90
3469 4788 6.784969 ACTATGCCTATGTAGTTTGGAGAGAT 59.215 38.462 0.00 0.00 0.00 2.75
3470 4789 6.040955 CACTATGCCTATGTAGTTTGGAGAGA 59.959 42.308 0.00 0.00 0.00 3.10
3471 4790 6.040955 TCACTATGCCTATGTAGTTTGGAGAG 59.959 42.308 0.00 0.00 0.00 3.20
3472 4791 5.897250 TCACTATGCCTATGTAGTTTGGAGA 59.103 40.000 0.00 0.00 0.00 3.71
3473 4792 6.161855 TCACTATGCCTATGTAGTTTGGAG 57.838 41.667 0.00 0.00 0.00 3.86
3474 4793 6.070481 TGTTCACTATGCCTATGTAGTTTGGA 60.070 38.462 0.00 0.00 0.00 3.53
3475 4794 6.037172 GTGTTCACTATGCCTATGTAGTTTGG 59.963 42.308 0.00 0.00 0.00 3.28
3476 4795 6.593770 TGTGTTCACTATGCCTATGTAGTTTG 59.406 38.462 4.59 0.00 0.00 2.93
3477 4796 6.707290 TGTGTTCACTATGCCTATGTAGTTT 58.293 36.000 4.59 0.00 0.00 2.66
3478 4797 6.294361 TGTGTTCACTATGCCTATGTAGTT 57.706 37.500 4.59 0.00 0.00 2.24
3479 4798 5.932619 TGTGTTCACTATGCCTATGTAGT 57.067 39.130 4.59 0.00 0.00 2.73
3480 4799 8.887036 TTATTGTGTTCACTATGCCTATGTAG 57.113 34.615 9.38 0.00 0.00 2.74
3481 4800 9.489084 GATTATTGTGTTCACTATGCCTATGTA 57.511 33.333 9.38 0.00 0.00 2.29
3482 4801 7.992608 TGATTATTGTGTTCACTATGCCTATGT 59.007 33.333 9.38 0.00 0.00 2.29
3483 4802 8.382030 TGATTATTGTGTTCACTATGCCTATG 57.618 34.615 9.38 0.00 0.00 2.23
3484 4803 8.978874 TTGATTATTGTGTTCACTATGCCTAT 57.021 30.769 9.38 0.54 0.00 2.57
3485 4804 8.673711 GTTTGATTATTGTGTTCACTATGCCTA 58.326 33.333 9.38 0.00 0.00 3.93
3486 4805 7.176515 TGTTTGATTATTGTGTTCACTATGCCT 59.823 33.333 9.38 0.00 0.00 4.75
3487 4806 7.273381 GTGTTTGATTATTGTGTTCACTATGCC 59.727 37.037 9.38 1.51 0.00 4.40
3488 4807 7.007367 CGTGTTTGATTATTGTGTTCACTATGC 59.993 37.037 9.38 1.90 0.00 3.14
3489 4808 7.007367 GCGTGTTTGATTATTGTGTTCACTATG 59.993 37.037 9.38 0.00 0.00 2.23
3490 4809 7.021196 GCGTGTTTGATTATTGTGTTCACTAT 58.979 34.615 4.59 5.04 0.00 2.12
3491 4810 6.017852 TGCGTGTTTGATTATTGTGTTCACTA 60.018 34.615 4.59 0.00 0.00 2.74
3492 4811 5.212194 GCGTGTTTGATTATTGTGTTCACT 58.788 37.500 4.59 0.00 0.00 3.41
3493 4812 4.973051 TGCGTGTTTGATTATTGTGTTCAC 59.027 37.500 0.00 0.00 0.00 3.18
3494 4813 5.175090 TGCGTGTTTGATTATTGTGTTCA 57.825 34.783 0.00 0.00 0.00 3.18
3495 4814 7.969387 ATATGCGTGTTTGATTATTGTGTTC 57.031 32.000 0.00 0.00 0.00 3.18
3496 4815 8.888716 TCTATATGCGTGTTTGATTATTGTGTT 58.111 29.630 0.00 0.00 0.00 3.32
3497 4816 8.335356 GTCTATATGCGTGTTTGATTATTGTGT 58.665 33.333 0.00 0.00 0.00 3.72
3498 4817 8.334632 TGTCTATATGCGTGTTTGATTATTGTG 58.665 33.333 0.00 0.00 0.00 3.33
3499 4818 8.335356 GTGTCTATATGCGTGTTTGATTATTGT 58.665 33.333 0.00 0.00 0.00 2.71
3500 4819 8.551205 AGTGTCTATATGCGTGTTTGATTATTG 58.449 33.333 0.00 0.00 0.00 1.90
3501 4820 8.662781 AGTGTCTATATGCGTGTTTGATTATT 57.337 30.769 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.