Multiple sequence alignment - TraesCS5B01G127600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G127600 chr5B 100.000 3001 0 0 1 3001 232787136 232784136 0.000000e+00 5542
1 TraesCS5B01G127600 chr5A 95.687 2736 54 34 1 2688 287609200 287611919 0.000000e+00 4340
2 TraesCS5B01G127600 chr5A 98.673 226 3 0 2776 3001 287611932 287612157 4.660000e-108 401
3 TraesCS5B01G127600 chr5D 95.589 2607 53 21 85 2655 216997616 217000196 0.000000e+00 4120
4 TraesCS5B01G127600 chr5D 99.140 349 1 1 2655 3001 217013973 217014321 7.060000e-176 627
5 TraesCS5B01G127600 chr5D 98.925 93 1 0 1 93 216997195 216997287 1.850000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G127600 chr5B 232784136 232787136 3000 True 5542.0 5542 100.000 1 3001 1 chr5B.!!$R1 3000
1 TraesCS5B01G127600 chr5A 287609200 287612157 2957 False 2370.5 4340 97.180 1 3001 2 chr5A.!!$F1 3000
2 TraesCS5B01G127600 chr5D 216997195 217000196 3001 False 2143.5 4120 97.257 1 2655 2 chr5D.!!$F2 2654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 585 0.178873 TCCACAAGGGCCTACTTCCT 60.179 55.0 6.41 0.0 36.21 3.36 F
1756 2149 0.535102 CAACTGCAGGACGGGAAGTT 60.535 55.0 19.93 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 2269 0.169672 CATTCTCCGCAGCAAACTGG 59.830 55.0 0.0 0.0 44.63 4.00 R
2723 3117 0.243907 TACCGAACTGTGAGCTGAGC 59.756 55.0 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 463 4.133078 GGAATATCAGAAAGCCAGACCAG 58.867 47.826 0.00 0.00 0.00 4.00
226 585 0.178873 TCCACAAGGGCCTACTTCCT 60.179 55.000 6.41 0.00 36.21 3.36
227 586 0.698818 CCACAAGGGCCTACTTCCTT 59.301 55.000 6.41 0.00 43.55 3.36
293 652 3.153919 GGTATTTTTGGTGTGCTCTCCA 58.846 45.455 5.49 5.49 35.73 3.86
294 653 3.572255 GGTATTTTTGGTGTGCTCTCCAA 59.428 43.478 16.17 16.17 42.88 3.53
478 850 6.864342 AGTACAAACATAAGATAGTCAGCGT 58.136 36.000 0.00 0.00 0.00 5.07
509 896 4.458989 GCATGAAGGTGTCTAATGTTTCCA 59.541 41.667 0.00 0.00 0.00 3.53
682 1069 7.227156 AGAACTGAAGAGATGTACCAACAAAT 58.773 34.615 0.00 0.00 39.58 2.32
703 1090 7.222611 ACAAATGAAGATAAAACAAGTGTGCAC 59.777 33.333 10.75 10.75 0.00 4.57
978 1366 6.425114 CAGCGTTCTTGCCACTATAAATAGAT 59.575 38.462 4.02 0.00 33.14 1.98
1334 1722 4.351874 TTCAATCCGGGAACTCCATATC 57.648 45.455 0.00 0.00 37.91 1.63
1612 2005 5.769662 TGGGAGCCATTTTGTCATATATGTC 59.230 40.000 12.42 7.74 0.00 3.06
1756 2149 0.535102 CAACTGCAGGACGGGAAGTT 60.535 55.000 19.93 0.00 0.00 2.66
1780 2173 1.162800 GCTATGAGAGCCCAAAGCCG 61.163 60.000 0.00 0.00 46.41 5.52
1876 2269 0.455815 GGGATCATTTCAACACCCGC 59.544 55.000 0.00 0.00 0.00 6.13
2091 2484 2.819608 TGCTTCCTTGCCACATTACTTC 59.180 45.455 0.00 0.00 0.00 3.01
2451 2844 4.038522 GCACTGCCACTATATTCAGAGAGA 59.961 45.833 0.00 0.00 0.00 3.10
2548 2942 5.025453 ACCCTATTTTGCCTTCATCATGTT 58.975 37.500 0.00 0.00 0.00 2.71
2561 2955 3.008923 TCATCATGTTCTTACACCCAGCA 59.991 43.478 0.00 0.00 37.03 4.41
2688 3082 8.458843 ACCTTGTACACATTCATTATTTGTAGC 58.541 33.333 0.00 0.00 31.75 3.58
2691 3085 8.329203 TGTACACATTCATTATTTGTAGCACA 57.671 30.769 0.00 0.00 31.75 4.57
2704 3098 7.887996 ATTTGTAGCACATTAACCAATTGTG 57.112 32.000 4.43 2.42 0.00 3.33
2705 3099 6.398234 TTGTAGCACATTAACCAATTGTGT 57.602 33.333 4.43 0.00 31.42 3.72
2706 3100 5.767269 TGTAGCACATTAACCAATTGTGTG 58.233 37.500 17.39 17.39 38.12 3.82
2708 3102 2.736192 GCACATTAACCAATTGTGTGCC 59.264 45.455 27.89 16.52 45.94 5.01
2709 3103 3.324993 CACATTAACCAATTGTGTGCCC 58.675 45.455 11.72 0.00 32.54 5.36
2710 3104 3.006752 CACATTAACCAATTGTGTGCCCT 59.993 43.478 11.72 0.00 32.54 5.19
2711 3105 3.645687 ACATTAACCAATTGTGTGCCCTT 59.354 39.130 4.43 0.00 0.00 3.95
2712 3106 4.835615 ACATTAACCAATTGTGTGCCCTTA 59.164 37.500 4.43 0.00 0.00 2.69
2713 3107 4.857509 TTAACCAATTGTGTGCCCTTAC 57.142 40.909 4.43 0.00 0.00 2.34
2714 3108 2.373335 ACCAATTGTGTGCCCTTACA 57.627 45.000 4.43 0.00 0.00 2.41
2715 3109 2.672098 ACCAATTGTGTGCCCTTACAA 58.328 42.857 4.43 0.00 40.65 2.41
2716 3110 2.364002 ACCAATTGTGTGCCCTTACAAC 59.636 45.455 4.43 0.00 39.36 3.32
2717 3111 2.363680 CCAATTGTGTGCCCTTACAACA 59.636 45.455 4.43 0.00 39.36 3.33
2718 3112 3.006752 CCAATTGTGTGCCCTTACAACAT 59.993 43.478 4.43 0.00 39.36 2.71
2719 3113 4.219507 CCAATTGTGTGCCCTTACAACATA 59.780 41.667 4.43 0.00 39.36 2.29
2720 3114 5.279206 CCAATTGTGTGCCCTTACAACATAA 60.279 40.000 4.43 0.00 39.36 1.90
2721 3115 6.397272 CAATTGTGTGCCCTTACAACATAAT 58.603 36.000 0.00 0.00 39.36 1.28
2722 3116 5.384063 TTGTGTGCCCTTACAACATAATG 57.616 39.130 0.00 0.00 32.30 1.90
2723 3117 3.761218 TGTGTGCCCTTACAACATAATGG 59.239 43.478 0.00 0.00 31.36 3.16
2724 3118 2.757868 TGTGCCCTTACAACATAATGGC 59.242 45.455 6.15 6.15 38.27 4.40
2725 3119 3.023832 GTGCCCTTACAACATAATGGCT 58.976 45.455 12.32 0.00 38.49 4.75
2726 3120 3.066760 GTGCCCTTACAACATAATGGCTC 59.933 47.826 12.32 6.83 38.49 4.70
2727 3121 3.287222 GCCCTTACAACATAATGGCTCA 58.713 45.455 5.91 0.00 35.98 4.26
2728 3122 3.316308 GCCCTTACAACATAATGGCTCAG 59.684 47.826 5.91 0.00 35.98 3.35
2729 3123 3.316308 CCCTTACAACATAATGGCTCAGC 59.684 47.826 0.00 0.00 0.00 4.26
2730 3124 4.202441 CCTTACAACATAATGGCTCAGCT 58.798 43.478 0.00 0.00 0.00 4.24
2731 3125 4.274459 CCTTACAACATAATGGCTCAGCTC 59.726 45.833 0.00 0.00 0.00 4.09
2732 3126 3.354948 ACAACATAATGGCTCAGCTCA 57.645 42.857 0.00 0.00 0.00 4.26
2733 3127 3.012518 ACAACATAATGGCTCAGCTCAC 58.987 45.455 0.00 0.00 0.00 3.51
2734 3128 3.011818 CAACATAATGGCTCAGCTCACA 58.988 45.455 0.00 0.00 0.00 3.58
2735 3129 2.915349 ACATAATGGCTCAGCTCACAG 58.085 47.619 0.00 0.00 0.00 3.66
2736 3130 2.238144 ACATAATGGCTCAGCTCACAGT 59.762 45.455 0.00 0.00 0.00 3.55
2737 3131 3.276857 CATAATGGCTCAGCTCACAGTT 58.723 45.455 0.00 0.00 0.00 3.16
2738 3132 1.818642 AATGGCTCAGCTCACAGTTC 58.181 50.000 0.00 0.00 0.00 3.01
2739 3133 0.390866 ATGGCTCAGCTCACAGTTCG 60.391 55.000 0.00 0.00 0.00 3.95
2740 3134 1.739562 GGCTCAGCTCACAGTTCGG 60.740 63.158 0.00 0.00 0.00 4.30
2741 3135 1.005630 GCTCAGCTCACAGTTCGGT 60.006 57.895 0.00 0.00 0.00 4.69
2742 3136 0.243907 GCTCAGCTCACAGTTCGGTA 59.756 55.000 0.00 0.00 0.00 4.02
2743 3137 1.983972 CTCAGCTCACAGTTCGGTAC 58.016 55.000 0.00 0.00 0.00 3.34
2744 3138 0.601558 TCAGCTCACAGTTCGGTACC 59.398 55.000 0.16 0.16 0.00 3.34
2745 3139 0.603569 CAGCTCACAGTTCGGTACCT 59.396 55.000 10.90 0.00 0.00 3.08
2746 3140 1.816835 CAGCTCACAGTTCGGTACCTA 59.183 52.381 10.90 0.00 0.00 3.08
2747 3141 2.230508 CAGCTCACAGTTCGGTACCTAA 59.769 50.000 10.90 1.82 0.00 2.69
2748 3142 3.097614 AGCTCACAGTTCGGTACCTAAT 58.902 45.455 10.90 0.00 0.00 1.73
2749 3143 3.130693 AGCTCACAGTTCGGTACCTAATC 59.869 47.826 10.90 0.90 0.00 1.75
2750 3144 3.119245 GCTCACAGTTCGGTACCTAATCA 60.119 47.826 10.90 0.00 0.00 2.57
2751 3145 4.441634 GCTCACAGTTCGGTACCTAATCAT 60.442 45.833 10.90 0.00 0.00 2.45
2752 3146 5.221185 GCTCACAGTTCGGTACCTAATCATA 60.221 44.000 10.90 0.00 0.00 2.15
2753 3147 6.516860 GCTCACAGTTCGGTACCTAATCATAT 60.517 42.308 10.90 0.00 0.00 1.78
2754 3148 7.309012 GCTCACAGTTCGGTACCTAATCATATA 60.309 40.741 10.90 0.00 0.00 0.86
2755 3149 8.467963 TCACAGTTCGGTACCTAATCATATAA 57.532 34.615 10.90 0.00 0.00 0.98
2756 3150 8.355169 TCACAGTTCGGTACCTAATCATATAAC 58.645 37.037 10.90 1.02 0.00 1.89
2757 3151 7.597743 CACAGTTCGGTACCTAATCATATAACC 59.402 40.741 10.90 0.00 0.00 2.85
2758 3152 7.288389 ACAGTTCGGTACCTAATCATATAACCA 59.712 37.037 10.90 0.00 0.00 3.67
2759 3153 7.813148 CAGTTCGGTACCTAATCATATAACCAG 59.187 40.741 10.90 0.00 0.00 4.00
2760 3154 6.845758 TCGGTACCTAATCATATAACCAGG 57.154 41.667 10.90 0.00 0.00 4.45
2761 3155 6.317312 TCGGTACCTAATCATATAACCAGGT 58.683 40.000 10.90 0.00 39.63 4.00
2762 3156 6.783977 TCGGTACCTAATCATATAACCAGGTT 59.216 38.462 10.50 10.50 37.55 3.50
2763 3157 7.949565 TCGGTACCTAATCATATAACCAGGTTA 59.050 37.037 14.74 14.74 37.55 2.85
2764 3158 8.248945 CGGTACCTAATCATATAACCAGGTTAG 58.751 40.741 17.31 4.64 37.55 2.34
2765 3159 9.097946 GGTACCTAATCATATAACCAGGTTAGT 57.902 37.037 17.31 8.81 37.55 2.24
2768 3162 9.448587 ACCTAATCATATAACCAGGTTAGTCTT 57.551 33.333 17.31 3.52 32.49 3.01
2808 3202 2.636830 CTGAGTCCAAGCCATACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
2834 3228 0.458370 GCATTTTAACGGCCTGGCAG 60.458 55.000 22.05 19.70 0.00 4.85
2934 3328 2.767960 GCCAATTCATCCTGAACCCAAT 59.232 45.455 0.00 0.00 39.45 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 515 5.307716 TGGAAAAGGAGGAATGATGCTTTTT 59.692 36.000 6.63 0.00 44.92 1.94
227 586 1.584175 CAATTGTTTGCAGCAAGGCA 58.416 45.000 8.12 8.98 43.19 4.75
384 743 3.803778 GCTGCTTAGTTTTGCACATTGTT 59.196 39.130 0.00 0.00 35.20 2.83
409 768 6.579666 TTTTTGCAAGAGTATCAGCAGATT 57.420 33.333 0.00 0.00 46.29 2.40
446 818 8.521176 ACTATCTTATGTTTGTACTCGACAGTT 58.479 33.333 0.00 0.00 39.88 3.16
447 819 8.053026 ACTATCTTATGTTTGTACTCGACAGT 57.947 34.615 0.00 0.00 39.88 3.55
451 823 7.194278 GCTGACTATCTTATGTTTGTACTCGA 58.806 38.462 0.00 0.00 0.00 4.04
452 824 6.140895 CGCTGACTATCTTATGTTTGTACTCG 59.859 42.308 0.00 0.00 0.00 4.18
453 825 6.973474 ACGCTGACTATCTTATGTTTGTACTC 59.027 38.462 0.00 0.00 0.00 2.59
455 827 6.198591 GGACGCTGACTATCTTATGTTTGTAC 59.801 42.308 0.00 0.00 0.00 2.90
456 828 6.270815 GGACGCTGACTATCTTATGTTTGTA 58.729 40.000 0.00 0.00 0.00 2.41
457 829 5.109903 GGACGCTGACTATCTTATGTTTGT 58.890 41.667 0.00 0.00 0.00 2.83
458 830 4.508124 GGGACGCTGACTATCTTATGTTTG 59.492 45.833 0.00 0.00 0.00 2.93
459 831 4.161565 TGGGACGCTGACTATCTTATGTTT 59.838 41.667 0.00 0.00 0.00 2.83
478 850 0.478072 ACACCTTCATGCAAGTGGGA 59.522 50.000 11.77 0.00 0.00 4.37
509 896 6.527423 TCACTACCTCCGTGTTATTTCTTTT 58.473 36.000 0.00 0.00 34.14 2.27
522 909 7.767198 TGAAAAGGTATTAAATCACTACCTCCG 59.233 37.037 5.41 0.00 43.45 4.63
642 1029 9.219603 CTCTTCAGTTCTAATGTTTGGTATTGA 57.780 33.333 0.00 0.00 0.00 2.57
655 1042 7.297936 TGTTGGTACATCTCTTCAGTTCTAA 57.702 36.000 0.00 0.00 39.30 2.10
656 1043 6.911250 TGTTGGTACATCTCTTCAGTTCTA 57.089 37.500 0.00 0.00 39.30 2.10
682 1069 5.826601 TGTGCACACTTGTTTTATCTTCA 57.173 34.783 17.42 0.00 0.00 3.02
978 1366 2.224378 GGGCATTGCTAGAGTATGAGCA 60.224 50.000 8.82 0.00 46.74 4.26
1612 2005 4.242475 TCAGTAACAATCCTGTAAGCGTG 58.758 43.478 0.00 0.00 33.45 5.34
1780 2173 2.717639 ACCTGTGGATGCCTATGTTC 57.282 50.000 0.00 0.00 0.00 3.18
1876 2269 0.169672 CATTCTCCGCAGCAAACTGG 59.830 55.000 0.00 0.00 44.63 4.00
1915 2308 3.005897 TCTGACAGTTGAAGTAGACAGCC 59.994 47.826 1.59 0.00 0.00 4.85
2548 2942 3.357203 TGTTTTGTTGCTGGGTGTAAGA 58.643 40.909 0.00 0.00 0.00 2.10
2688 3082 3.006752 AGGGCACACAATTGGTTAATGTG 59.993 43.478 17.39 17.39 34.43 3.21
2691 3085 4.835615 TGTAAGGGCACACAATTGGTTAAT 59.164 37.500 10.83 0.00 0.00 1.40
2694 3088 2.672098 TGTAAGGGCACACAATTGGTT 58.328 42.857 10.83 0.00 0.00 3.67
2695 3089 2.364002 GTTGTAAGGGCACACAATTGGT 59.636 45.455 10.83 2.02 37.04 3.67
2696 3090 2.363680 TGTTGTAAGGGCACACAATTGG 59.636 45.455 10.83 1.35 37.04 3.16
2699 3093 5.105392 CCATTATGTTGTAAGGGCACACAAT 60.105 40.000 0.00 0.00 37.04 2.71
2700 3094 4.219507 CCATTATGTTGTAAGGGCACACAA 59.780 41.667 0.00 0.00 32.40 3.33
2701 3095 3.761218 CCATTATGTTGTAAGGGCACACA 59.239 43.478 0.00 0.00 0.00 3.72
2702 3096 4.370364 CCATTATGTTGTAAGGGCACAC 57.630 45.455 0.00 0.00 0.00 3.82
2707 3101 3.316308 GCTGAGCCATTATGTTGTAAGGG 59.684 47.826 0.00 0.00 0.00 3.95
2708 3102 4.202441 AGCTGAGCCATTATGTTGTAAGG 58.798 43.478 0.00 0.00 0.00 2.69
2709 3103 4.877823 TGAGCTGAGCCATTATGTTGTAAG 59.122 41.667 0.00 0.00 0.00 2.34
2710 3104 4.635765 GTGAGCTGAGCCATTATGTTGTAA 59.364 41.667 0.00 0.00 0.00 2.41
2711 3105 4.191544 GTGAGCTGAGCCATTATGTTGTA 58.808 43.478 0.00 0.00 0.00 2.41
2712 3106 3.012518 GTGAGCTGAGCCATTATGTTGT 58.987 45.455 0.00 0.00 0.00 3.32
2713 3107 3.011818 TGTGAGCTGAGCCATTATGTTG 58.988 45.455 0.00 0.00 0.00 3.33
2714 3108 3.276857 CTGTGAGCTGAGCCATTATGTT 58.723 45.455 0.00 0.00 0.00 2.71
2715 3109 2.238144 ACTGTGAGCTGAGCCATTATGT 59.762 45.455 0.00 0.00 0.00 2.29
2716 3110 2.915349 ACTGTGAGCTGAGCCATTATG 58.085 47.619 0.00 0.00 0.00 1.90
2717 3111 3.539604 GAACTGTGAGCTGAGCCATTAT 58.460 45.455 0.00 0.00 0.00 1.28
2718 3112 2.675032 CGAACTGTGAGCTGAGCCATTA 60.675 50.000 0.00 0.00 0.00 1.90
2719 3113 1.818642 GAACTGTGAGCTGAGCCATT 58.181 50.000 0.00 0.00 0.00 3.16
2720 3114 0.390866 CGAACTGTGAGCTGAGCCAT 60.391 55.000 0.00 0.00 0.00 4.40
2721 3115 1.005748 CGAACTGTGAGCTGAGCCA 60.006 57.895 0.00 0.00 0.00 4.75
2722 3116 1.739562 CCGAACTGTGAGCTGAGCC 60.740 63.158 0.00 0.00 0.00 4.70
2723 3117 0.243907 TACCGAACTGTGAGCTGAGC 59.756 55.000 0.00 0.00 0.00 4.26
2724 3118 1.402984 GGTACCGAACTGTGAGCTGAG 60.403 57.143 0.00 0.00 0.00 3.35
2725 3119 0.601558 GGTACCGAACTGTGAGCTGA 59.398 55.000 0.00 0.00 0.00 4.26
2726 3120 0.603569 AGGTACCGAACTGTGAGCTG 59.396 55.000 6.18 0.00 0.00 4.24
2727 3121 2.211250 TAGGTACCGAACTGTGAGCT 57.789 50.000 6.18 0.00 0.00 4.09
2728 3122 3.119245 TGATTAGGTACCGAACTGTGAGC 60.119 47.826 9.86 0.00 0.00 4.26
2729 3123 4.713824 TGATTAGGTACCGAACTGTGAG 57.286 45.455 9.86 0.00 0.00 3.51
2730 3124 6.971726 ATATGATTAGGTACCGAACTGTGA 57.028 37.500 9.86 0.00 0.00 3.58
2731 3125 7.597743 GGTTATATGATTAGGTACCGAACTGTG 59.402 40.741 9.86 0.00 0.00 3.66
2732 3126 7.288389 TGGTTATATGATTAGGTACCGAACTGT 59.712 37.037 9.86 1.74 0.00 3.55
2733 3127 7.663827 TGGTTATATGATTAGGTACCGAACTG 58.336 38.462 9.86 0.00 0.00 3.16
2734 3128 7.039223 CCTGGTTATATGATTAGGTACCGAACT 60.039 40.741 9.86 0.00 0.00 3.01
2735 3129 7.095270 CCTGGTTATATGATTAGGTACCGAAC 58.905 42.308 9.86 5.20 0.00 3.95
2736 3130 6.783977 ACCTGGTTATATGATTAGGTACCGAA 59.216 38.462 10.08 10.08 36.81 4.30
2737 3131 6.317312 ACCTGGTTATATGATTAGGTACCGA 58.683 40.000 6.18 0.00 36.81 4.69
2738 3132 6.600882 ACCTGGTTATATGATTAGGTACCG 57.399 41.667 6.18 0.00 36.81 4.02
2739 3133 9.097946 ACTAACCTGGTTATATGATTAGGTACC 57.902 37.037 19.02 2.73 37.55 3.34
2742 3136 9.448587 AAGACTAACCTGGTTATATGATTAGGT 57.551 33.333 19.02 10.29 40.07 3.08
2755 3149 9.668497 GTCAAATAGATAAAAGACTAACCTGGT 57.332 33.333 0.00 0.00 0.00 4.00
2756 3150 9.667107 TGTCAAATAGATAAAAGACTAACCTGG 57.333 33.333 0.00 0.00 0.00 4.45
2769 3163 8.677300 GGACTCAGCAAAATGTCAAATAGATAA 58.323 33.333 0.00 0.00 0.00 1.75
2770 3164 7.828717 TGGACTCAGCAAAATGTCAAATAGATA 59.171 33.333 0.00 0.00 0.00 1.98
2771 3165 6.660521 TGGACTCAGCAAAATGTCAAATAGAT 59.339 34.615 0.00 0.00 0.00 1.98
2772 3166 6.003326 TGGACTCAGCAAAATGTCAAATAGA 58.997 36.000 0.00 0.00 0.00 1.98
2773 3167 6.258230 TGGACTCAGCAAAATGTCAAATAG 57.742 37.500 0.00 0.00 0.00 1.73
2774 3168 6.647334 TTGGACTCAGCAAAATGTCAAATA 57.353 33.333 0.00 0.00 0.00 1.40
2808 3202 1.674441 GGCCGTTAAAATGCCTCCTAC 59.326 52.381 0.00 0.00 42.01 3.18
2834 3228 2.777832 AGGTCAGGCTTGATCTGAAC 57.222 50.000 11.35 3.72 43.17 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.