Multiple sequence alignment - TraesCS5B01G127500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G127500 chr5B 100.000 3179 0 0 1 3179 232660399 232663577 0.000000e+00 5871.0
1 TraesCS5B01G127500 chr5D 95.252 2359 69 13 859 3179 217229601 217227248 0.000000e+00 3696.0
2 TraesCS5B01G127500 chr5D 89.342 638 56 5 649 1286 217285625 217285000 0.000000e+00 791.0
3 TraesCS5B01G127500 chr5D 89.398 349 26 7 22 370 217230776 217230439 2.270000e-116 429.0
4 TraesCS5B01G127500 chr5D 84.547 453 41 12 243 678 217230441 217230001 3.790000e-114 422.0
5 TraesCS5B01G127500 chr5D 91.124 169 15 0 700 868 217230015 217229847 2.470000e-56 230.0
6 TraesCS5B01G127500 chr5A 93.145 2553 91 27 701 3179 288261537 288258995 0.000000e+00 3668.0
7 TraesCS5B01G127500 chr2A 91.429 105 8 1 3076 3179 668225500 668225396 3.310000e-30 143.0
8 TraesCS5B01G127500 chr6A 89.623 106 8 1 3077 3179 23891892 23891997 7.160000e-27 132.0
9 TraesCS5B01G127500 chr7D 87.963 108 7 5 3075 3179 589475091 589475195 4.310000e-24 122.0
10 TraesCS5B01G127500 chr2B 87.255 102 6 5 3076 3171 790807025 790807125 3.350000e-20 110.0
11 TraesCS5B01G127500 chr1B 85.981 107 9 6 3076 3179 427781633 427781736 3.350000e-20 110.0
12 TraesCS5B01G127500 chr2D 85.577 104 14 1 3076 3179 626992349 626992451 1.210000e-19 108.0
13 TraesCS5B01G127500 chr4D 83.654 104 16 1 3076 3179 77038790 77038688 2.610000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G127500 chr5B 232660399 232663577 3178 False 5871.00 5871 100.00000 1 3179 1 chr5B.!!$F1 3178
1 TraesCS5B01G127500 chr5D 217227248 217230776 3528 True 1194.25 3696 90.08025 22 3179 4 chr5D.!!$R2 3157
2 TraesCS5B01G127500 chr5D 217285000 217285625 625 True 791.00 791 89.34200 649 1286 1 chr5D.!!$R1 637
3 TraesCS5B01G127500 chr5A 288258995 288261537 2542 True 3668.00 3668 93.14500 701 3179 1 chr5A.!!$R1 2478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 953 0.036388 ACTGACACGTATGCCCCAAG 60.036 55.0 0.0 0.0 0.0 3.61 F
2073 2471 1.116536 TGGACCTGCACGACTACCAA 61.117 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 2564 0.687354 AGGCACCTCACCAGTACAAG 59.313 55.0 0.00 0.0 0.00 3.16 R
3072 3549 1.559831 GCCAAAAGCAATATCCGCAC 58.440 50.0 0.45 0.0 42.97 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.170919 GGCTGCGAGCATGAATCCAT 61.171 55.000 0.00 0.00 44.75 3.41
56 57 1.893808 CCATGGCTTAATCGCGCCT 60.894 57.895 0.00 0.00 46.42 5.52
102 103 2.361610 CCCCGTGCAAAGCTCCAT 60.362 61.111 0.00 0.00 0.00 3.41
103 104 2.703798 CCCCGTGCAAAGCTCCATG 61.704 63.158 0.00 0.00 0.00 3.66
105 106 1.503542 CCGTGCAAAGCTCCATGAC 59.496 57.895 0.00 0.00 0.00 3.06
182 183 4.142038 GAGCTCCCAAACTAGTGGAAAAA 58.858 43.478 0.87 0.00 41.65 1.94
191 192 2.304761 ACTAGTGGAAAAAGATGCGGGA 59.695 45.455 0.00 0.00 0.00 5.14
200 201 3.140814 GATGCGGGAAAGGGTGGC 61.141 66.667 0.00 0.00 0.00 5.01
217 218 2.872557 CGGAACTACTCGACGGCA 59.127 61.111 0.00 0.00 0.00 5.69
218 219 1.432251 CGGAACTACTCGACGGCAT 59.568 57.895 0.00 0.00 0.00 4.40
219 220 0.866061 CGGAACTACTCGACGGCATG 60.866 60.000 0.00 0.00 0.00 4.06
220 221 0.527817 GGAACTACTCGACGGCATGG 60.528 60.000 0.00 0.00 0.00 3.66
221 222 0.527817 GAACTACTCGACGGCATGGG 60.528 60.000 0.00 0.00 0.00 4.00
222 223 1.956629 AACTACTCGACGGCATGGGG 61.957 60.000 0.00 0.00 0.00 4.96
223 224 2.363276 TACTCGACGGCATGGGGT 60.363 61.111 0.00 0.00 0.00 4.95
224 225 2.351336 CTACTCGACGGCATGGGGTC 62.351 65.000 0.00 0.00 0.00 4.46
297 423 0.440371 CGAGCTGAAACTTTCGCTCC 59.560 55.000 25.67 16.32 45.09 4.70
304 430 2.875933 TGAAACTTTCGCTCCGTCAAAT 59.124 40.909 0.00 0.00 0.00 2.32
315 441 3.727970 GCTCCGTCAAATTTTTCTAGCGG 60.728 47.826 0.00 0.00 39.33 5.52
329 455 3.294214 TCTAGCGGTAGGGGAAACTAAG 58.706 50.000 20.78 0.00 0.00 2.18
336 462 4.443034 CGGTAGGGGAAACTAAGAATCAGG 60.443 50.000 0.00 0.00 0.00 3.86
348 474 2.863809 AGAATCAGGCGGTGAAAACTT 58.136 42.857 0.00 0.00 39.19 2.66
359 485 0.040514 TGAAAACTTCACATGCGGCG 60.041 50.000 0.51 0.51 34.08 6.46
362 488 1.795170 AAACTTCACATGCGGCGCTT 61.795 50.000 33.26 24.46 0.00 4.68
377 503 1.665735 GCGCTTTGGCTGATTTTTCGA 60.666 47.619 0.00 0.00 36.09 3.71
380 506 2.926586 GCTTTGGCTGATTTTTCGACCC 60.927 50.000 0.00 0.00 35.22 4.46
383 509 1.136774 GCTGATTTTTCGACCCGGC 59.863 57.895 0.00 0.00 0.00 6.13
394 520 1.871077 GACCCGGCACCTTAAAACG 59.129 57.895 0.00 0.00 0.00 3.60
395 521 1.579964 GACCCGGCACCTTAAAACGG 61.580 60.000 0.00 0.00 43.89 4.44
396 522 2.564458 CCGGCACCTTAAAACGGC 59.436 61.111 0.00 0.00 37.93 5.68
398 524 2.564458 GGCACCTTAAAACGGCGG 59.436 61.111 13.24 0.00 0.00 6.13
416 542 0.392060 GGTTATTATAGCGGCCGGGG 60.392 60.000 29.38 0.00 0.00 5.73
464 590 7.600065 TCTAACCTATCACCGCATAACTAATC 58.400 38.462 0.00 0.00 0.00 1.75
467 593 6.456501 ACCTATCACCGCATAACTAATCTTC 58.543 40.000 0.00 0.00 0.00 2.87
468 594 6.041637 ACCTATCACCGCATAACTAATCTTCA 59.958 38.462 0.00 0.00 0.00 3.02
469 595 7.099764 CCTATCACCGCATAACTAATCTTCAT 58.900 38.462 0.00 0.00 0.00 2.57
470 596 8.251026 CCTATCACCGCATAACTAATCTTCATA 58.749 37.037 0.00 0.00 0.00 2.15
471 597 9.295214 CTATCACCGCATAACTAATCTTCATAG 57.705 37.037 0.00 0.00 0.00 2.23
531 673 0.179140 CCCAAATGAATCAACGGGCG 60.179 55.000 2.64 0.00 0.00 6.13
533 675 0.171007 CAAATGAATCAACGGGCGCT 59.829 50.000 7.64 0.00 0.00 5.92
569 712 3.411808 ACGCGAGTATTCTTTGCGA 57.588 47.368 15.93 0.00 46.88 5.10
582 725 0.247736 TTTGCGAGGAGAAGAGCCTC 59.752 55.000 0.00 0.00 46.74 4.70
625 768 3.741344 CGTGGATCGATTAAGATGTTCCC 59.259 47.826 0.00 0.00 42.86 3.97
684 827 0.668535 CACGACTCACACCTCACTCA 59.331 55.000 0.00 0.00 0.00 3.41
688 831 2.481276 CGACTCACACCTCACTCACAAA 60.481 50.000 0.00 0.00 0.00 2.83
689 832 3.531538 GACTCACACCTCACTCACAAAA 58.468 45.455 0.00 0.00 0.00 2.44
690 833 3.938963 GACTCACACCTCACTCACAAAAA 59.061 43.478 0.00 0.00 0.00 1.94
720 863 2.262915 CGGCTCACACCCTGTCTC 59.737 66.667 0.00 0.00 0.00 3.36
730 873 1.355720 CACCCTGTCTCCTTTTGGGAT 59.644 52.381 3.13 0.00 44.15 3.85
744 887 0.178995 TGGGATGTTTGAGTGCAGCA 60.179 50.000 0.00 0.00 0.00 4.41
810 953 0.036388 ACTGACACGTATGCCCCAAG 60.036 55.000 0.00 0.00 0.00 3.61
1803 2201 2.286121 TCCCCATTCCCGCTCCTT 60.286 61.111 0.00 0.00 0.00 3.36
1875 2273 1.949631 GATCCGGCGATTCGTGTCC 60.950 63.158 9.30 0.00 0.00 4.02
2052 2450 2.507886 TCACACCAACCAGAAGAAGGAA 59.492 45.455 0.00 0.00 0.00 3.36
2073 2471 1.116536 TGGACCTGCACGACTACCAA 61.117 55.000 0.00 0.00 0.00 3.67
2207 2606 6.204108 GCCTTAACTGTGTGTATTACTGTGTT 59.796 38.462 0.00 0.00 31.77 3.32
2208 2607 7.572759 CCTTAACTGTGTGTATTACTGTGTTG 58.427 38.462 0.00 0.00 31.77 3.33
2209 2608 7.225931 CCTTAACTGTGTGTATTACTGTGTTGT 59.774 37.037 0.00 0.00 31.77 3.32
2254 2653 8.559536 ACTACTACACTTGATTGACAAAATGTG 58.440 33.333 13.99 13.99 37.96 3.21
2286 2685 5.007724 CCGACAGAGAATTGTAAATTAGGGC 59.992 44.000 0.00 0.00 0.00 5.19
2287 2686 5.584649 CGACAGAGAATTGTAAATTAGGGCA 59.415 40.000 0.00 0.00 0.00 5.36
2289 2688 7.201732 CGACAGAGAATTGTAAATTAGGGCAAT 60.202 37.037 0.00 0.00 33.55 3.56
2290 2689 7.775120 ACAGAGAATTGTAAATTAGGGCAATG 58.225 34.615 0.00 0.00 32.64 2.82
2321 2734 2.627945 TGTAAGCAGAAATGTAGGCCG 58.372 47.619 0.00 0.00 0.00 6.13
2343 2756 3.826157 GGTTTGGTGATCAGATGGTTCAA 59.174 43.478 0.00 0.00 0.00 2.69
2354 2783 5.331906 TCAGATGGTTCAAATGATGGGAAA 58.668 37.500 0.00 0.00 0.00 3.13
2374 2806 3.685836 ACCGCAAGTTCTTGTTTGTAC 57.314 42.857 13.04 0.00 0.00 2.90
2378 2810 5.178809 ACCGCAAGTTCTTGTTTGTACTATC 59.821 40.000 13.04 0.00 0.00 2.08
2442 2874 6.127253 TGGTTAGTACTAGCTGACAATAACCC 60.127 42.308 20.44 10.12 39.97 4.11
2478 2910 7.012421 ACACTCTGCTTTAAACAGGAAAGTAAG 59.988 37.037 14.02 7.71 36.47 2.34
2541 2973 6.037062 TGGAACAATATACAGTGCTGATTTCG 59.963 38.462 6.17 0.00 31.92 3.46
2580 3012 5.818857 TGAGTAGCCTACTTTGTTTCGTTTT 59.181 36.000 5.74 0.00 39.59 2.43
2588 3020 5.012655 ACTTTGTTTCGTTTTTGTTGCAC 57.987 34.783 0.00 0.00 0.00 4.57
2670 3117 2.582728 ATGTGGTGCAAACTGTTGTG 57.417 45.000 0.00 0.00 37.06 3.33
2672 3119 0.814457 GTGGTGCAAACTGTTGTGGA 59.186 50.000 0.00 0.00 37.06 4.02
2673 3120 1.408702 GTGGTGCAAACTGTTGTGGAT 59.591 47.619 0.00 0.00 37.06 3.41
2674 3121 2.621055 GTGGTGCAAACTGTTGTGGATA 59.379 45.455 0.00 0.00 37.06 2.59
2675 3122 3.255642 GTGGTGCAAACTGTTGTGGATAT 59.744 43.478 0.00 0.00 37.06 1.63
2812 3282 1.066573 AGTACTGCTGCGCTCTCATTT 60.067 47.619 9.73 0.00 0.00 2.32
2863 3333 3.494048 CCAGGGCAGATGTTATCTCTGTC 60.494 52.174 2.63 0.00 43.15 3.51
2865 3335 2.131183 GGCAGATGTTATCTCTGTCGC 58.869 52.381 2.63 0.00 41.77 5.19
2939 3410 3.723260 TGTGCTCTTTACATTCGTCACA 58.277 40.909 0.00 0.00 0.00 3.58
3000 3476 3.563808 TGACATTACAATTATGCCGCCTC 59.436 43.478 0.00 0.00 0.00 4.70
3072 3549 6.319658 ACTCAAATTTGCATCACACCTATAGG 59.680 38.462 17.73 17.73 42.17 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.802051 TTCATGCTCGCAGCCCCC 62.802 66.667 0.00 0.00 41.51 5.40
20 21 2.517875 ATTCATGCTCGCAGCCCC 60.518 61.111 0.00 0.00 41.51 5.80
27 28 1.315690 AAGCCATGGATTCATGCTCG 58.684 50.000 18.40 0.00 47.00 5.03
56 57 3.450507 TCGGAAGACGTTGCTCCA 58.549 55.556 10.88 0.00 44.69 3.86
89 90 0.955428 TCCGTCATGGAGCTTTGCAC 60.955 55.000 0.00 0.00 43.74 4.57
90 91 1.374568 TCCGTCATGGAGCTTTGCA 59.625 52.632 0.00 0.00 43.74 4.08
102 103 2.513666 GCCGCCATTGATCCGTCA 60.514 61.111 0.00 0.00 0.00 4.35
103 104 3.640000 CGCCGCCATTGATCCGTC 61.640 66.667 0.00 0.00 0.00 4.79
105 106 4.908687 TCCGCCGCCATTGATCCG 62.909 66.667 0.00 0.00 0.00 4.18
158 159 0.741221 CCACTAGTTTGGGAGCTCGC 60.741 60.000 23.06 23.06 32.35 5.03
182 183 2.677228 CCACCCTTTCCCGCATCT 59.323 61.111 0.00 0.00 0.00 2.90
191 192 0.323957 GAGTAGTTCCGCCACCCTTT 59.676 55.000 0.00 0.00 0.00 3.11
200 201 0.866061 CATGCCGTCGAGTAGTTCCG 60.866 60.000 0.00 0.00 0.00 4.30
201 202 0.527817 CCATGCCGTCGAGTAGTTCC 60.528 60.000 0.00 0.00 0.00 3.62
231 232 0.456142 TCGTCGTCGATTCTTGCTGG 60.456 55.000 0.00 0.00 41.35 4.85
297 423 4.201783 CCCTACCGCTAGAAAAATTTGACG 60.202 45.833 0.00 0.00 0.00 4.35
304 430 3.328637 AGTTTCCCCTACCGCTAGAAAAA 59.671 43.478 0.00 0.00 0.00 1.94
315 441 4.452825 GCCTGATTCTTAGTTTCCCCTAC 58.547 47.826 0.00 0.00 0.00 3.18
329 455 2.552315 TGAAGTTTTCACCGCCTGATTC 59.448 45.455 0.00 0.00 34.08 2.52
348 474 3.736100 CCAAAGCGCCGCATGTGA 61.736 61.111 13.36 0.00 0.00 3.58
359 485 2.328473 GGTCGAAAAATCAGCCAAAGC 58.672 47.619 0.00 0.00 40.32 3.51
362 488 0.878416 CGGGTCGAAAAATCAGCCAA 59.122 50.000 0.00 0.00 0.00 4.52
367 493 1.238625 GGTGCCGGGTCGAAAAATCA 61.239 55.000 2.18 0.00 0.00 2.57
377 503 1.601477 CCGTTTTAAGGTGCCGGGT 60.601 57.895 2.18 0.00 35.11 5.28
380 506 2.174835 CGCCGTTTTAAGGTGCCG 59.825 61.111 0.00 0.00 32.08 5.69
383 509 3.835378 AATAACCGCCGTTTTAAGGTG 57.165 42.857 0.00 0.00 37.03 4.00
394 520 1.356527 CGGCCGCTATAATAACCGCC 61.357 60.000 14.67 0.00 33.46 6.13
395 521 1.356527 CCGGCCGCTATAATAACCGC 61.357 60.000 22.85 0.00 39.31 5.68
396 522 0.738412 CCCGGCCGCTATAATAACCG 60.738 60.000 22.85 0.28 40.30 4.44
398 524 1.022982 GCCCCGGCCGCTATAATAAC 61.023 60.000 22.85 0.00 34.56 1.89
420 546 2.111878 CATCCTTAGCAGGCCCCG 59.888 66.667 0.00 0.00 40.58 5.73
424 550 3.118223 AGGTTAGAACATCCTTAGCAGGC 60.118 47.826 0.00 0.00 40.58 4.85
425 551 4.762289 AGGTTAGAACATCCTTAGCAGG 57.238 45.455 0.00 0.00 42.50 4.85
432 558 3.069729 GCGGTGATAGGTTAGAACATCCT 59.930 47.826 0.00 0.00 35.60 3.24
433 559 3.181469 TGCGGTGATAGGTTAGAACATCC 60.181 47.826 0.00 0.00 0.00 3.51
434 560 4.054780 TGCGGTGATAGGTTAGAACATC 57.945 45.455 0.00 0.00 0.00 3.06
438 564 5.864418 AGTTATGCGGTGATAGGTTAGAA 57.136 39.130 0.00 0.00 0.00 2.10
488 621 8.803235 GGGGTTTGTTTCTATGAAGATTAGTTT 58.197 33.333 0.00 0.00 0.00 2.66
492 625 8.713708 TTTGGGGTTTGTTTCTATGAAGATTA 57.286 30.769 0.00 0.00 0.00 1.75
496 629 6.991938 TCATTTGGGGTTTGTTTCTATGAAG 58.008 36.000 0.00 0.00 0.00 3.02
497 630 6.985653 TCATTTGGGGTTTGTTTCTATGAA 57.014 33.333 0.00 0.00 0.00 2.57
503 636 5.050431 CGTTGATTCATTTGGGGTTTGTTTC 60.050 40.000 0.00 0.00 0.00 2.78
557 700 3.553917 GCTCTTCTCCTCGCAAAGAATAC 59.446 47.826 0.00 0.00 31.45 1.89
562 705 0.248843 AGGCTCTTCTCCTCGCAAAG 59.751 55.000 0.00 0.00 0.00 2.77
592 735 9.752961 TCTTAATCGATCCACGTAATTATTTCA 57.247 29.630 0.00 0.00 43.13 2.69
595 738 9.706691 ACATCTTAATCGATCCACGTAATTATT 57.293 29.630 0.00 0.00 43.13 1.40
596 739 9.706691 AACATCTTAATCGATCCACGTAATTAT 57.293 29.630 0.00 0.00 43.13 1.28
615 758 2.929043 AGGGGATCAAAGGGAACATCTT 59.071 45.455 0.00 0.00 0.00 2.40
625 768 3.225940 GCCAATAAGGAGGGGATCAAAG 58.774 50.000 0.00 0.00 41.22 2.77
690 833 3.924073 GTGTGAGCCGTGTTTTTCTTTTT 59.076 39.130 0.00 0.00 0.00 1.94
691 834 3.507786 GTGTGAGCCGTGTTTTTCTTTT 58.492 40.909 0.00 0.00 0.00 2.27
692 835 2.159296 GGTGTGAGCCGTGTTTTTCTTT 60.159 45.455 0.00 0.00 0.00 2.52
693 836 1.404035 GGTGTGAGCCGTGTTTTTCTT 59.596 47.619 0.00 0.00 0.00 2.52
694 837 1.021968 GGTGTGAGCCGTGTTTTTCT 58.978 50.000 0.00 0.00 0.00 2.52
695 838 0.030235 GGGTGTGAGCCGTGTTTTTC 59.970 55.000 0.00 0.00 0.00 2.29
705 848 0.398318 AAAGGAGACAGGGTGTGAGC 59.602 55.000 0.00 0.00 0.00 4.26
720 863 2.364970 TGCACTCAAACATCCCAAAAGG 59.635 45.455 0.00 0.00 0.00 3.11
730 873 2.105984 GGTGTGCTGCACTCAAACA 58.894 52.632 30.43 9.21 46.86 2.83
744 887 4.265056 GGTGGGCAGTTCGGGTGT 62.265 66.667 0.00 0.00 0.00 4.16
826 969 0.169672 TCGAACGAGGTGACCGAATC 59.830 55.000 0.00 0.00 0.00 2.52
935 1333 2.675423 CGTGACTCGAGGGGTGGA 60.675 66.667 18.41 0.00 42.86 4.02
1287 1685 4.436998 GACACGGTCCTCGGCCTG 62.437 72.222 0.00 0.00 44.45 4.85
1338 1736 2.586357 GCGAGCAGGGATTCGTCC 60.586 66.667 0.00 0.00 38.96 4.79
1420 1818 0.253044 ATGACGCTGGCCACATTACT 59.747 50.000 0.00 0.00 0.00 2.24
2052 2450 1.533469 GGTAGTCGTGCAGGTCCAGT 61.533 60.000 6.26 0.00 0.00 4.00
2073 2471 1.332997 CCGTAGAAATCGTACTCCGCT 59.667 52.381 0.00 0.00 36.19 5.52
2166 2564 0.687354 AGGCACCTCACCAGTACAAG 59.313 55.000 0.00 0.00 0.00 3.16
2254 2653 5.803020 ACAATTCTCTGTCGGCTAAATTC 57.197 39.130 0.00 0.00 0.00 2.17
2286 2685 6.680810 TCTGCTTACAAATTTCAGTCCATTG 58.319 36.000 4.35 0.00 0.00 2.82
2287 2686 6.899393 TCTGCTTACAAATTTCAGTCCATT 57.101 33.333 4.35 0.00 0.00 3.16
2289 2688 6.707440 TTTCTGCTTACAAATTTCAGTCCA 57.293 33.333 4.35 0.00 0.00 4.02
2290 2689 7.147976 ACATTTCTGCTTACAAATTTCAGTCC 58.852 34.615 4.35 0.00 0.00 3.85
2321 2734 3.420893 TGAACCATCTGATCACCAAACC 58.579 45.455 0.00 0.00 0.00 3.27
2343 2756 1.923356 ACTTGCGGTTTCCCATCATT 58.077 45.000 0.00 0.00 0.00 2.57
2354 2783 3.275999 AGTACAAACAAGAACTTGCGGT 58.724 40.909 13.50 11.35 44.03 5.68
2374 2806 3.693085 AGCAACAGTCCAAAGCATGATAG 59.307 43.478 0.00 0.00 0.00 2.08
2378 2810 1.933500 GCAGCAACAGTCCAAAGCATG 60.934 52.381 0.00 0.00 0.00 4.06
2442 2874 7.753132 TGTTTAAAGCAGAGTGTAAACAACTTG 59.247 33.333 5.59 0.00 41.22 3.16
2478 2910 5.128991 AGGCTACCAAACTGAATAGTCTACC 59.871 44.000 0.00 0.00 35.69 3.18
2514 2946 6.932356 ATCAGCACTGTATATTGTTCCAAG 57.068 37.500 0.00 0.00 0.00 3.61
2541 2973 4.142337 GGCTACTCACTCTCCTCACTTAAC 60.142 50.000 0.00 0.00 0.00 2.01
2710 3161 5.460646 TCATAAAAAGAAAAGAGCAAGGCG 58.539 37.500 0.00 0.00 0.00 5.52
2812 3282 1.338960 TGAAGCGAGTCATGGATGCAA 60.339 47.619 0.00 0.00 0.00 4.08
2880 3350 8.621286 AGTACTTTGATAAACAACAACCTCAAG 58.379 33.333 0.00 0.00 38.29 3.02
2939 3410 6.406400 CCGATGAGAAAGACTACTCCAGAAAT 60.406 42.308 6.99 0.00 32.84 2.17
3000 3476 6.132791 TGTAGTAGCATTTCTCTAAGTCGG 57.867 41.667 0.00 0.00 0.00 4.79
3044 3521 3.243839 GGTGTGATGCAAATTTGAGTGGT 60.244 43.478 22.31 1.97 0.00 4.16
3072 3549 1.559831 GCCAAAAGCAATATCCGCAC 58.440 50.000 0.45 0.00 42.97 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.