Multiple sequence alignment - TraesCS5B01G127000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G127000 chr5B 100.000 2716 0 0 1 2716 232213140 232215855 0.000000e+00 5016
1 TraesCS5B01G127000 chr5B 93.522 602 27 3 2127 2716 615002531 615001930 0.000000e+00 885
2 TraesCS5B01G127000 chr5B 89.778 225 22 1 1904 2127 64626301 64626077 1.230000e-73 287
3 TraesCS5B01G127000 chr5D 96.064 1067 28 3 802 1864 216098452 216099508 0.000000e+00 1725
4 TraesCS5B01G127000 chr5D 94.444 252 7 2 356 600 216098186 216098437 5.490000e-102 381
5 TraesCS5B01G127000 chr5D 89.686 223 21 2 1907 2127 379421592 379421370 1.590000e-72 283
6 TraesCS5B01G127000 chr5A 93.740 655 26 5 773 1423 285306059 285306702 0.000000e+00 968
7 TraesCS5B01G127000 chr5A 87.566 571 44 12 53 597 285213982 285214551 1.060000e-178 636
8 TraesCS5B01G127000 chr5A 86.806 576 35 19 53 600 285305504 285306066 2.990000e-169 604
9 TraesCS5B01G127000 chr5A 89.041 219 23 1 1910 2127 462877355 462877137 1.240000e-68 270
10 TraesCS5B01G127000 chr5A 91.837 196 8 2 1677 1864 285306803 285306998 1.600000e-67 267
11 TraesCS5B01G127000 chr5A 96.460 113 4 0 1384 1496 285306697 285306809 1.280000e-43 187
12 TraesCS5B01G127000 chr2B 94.030 603 24 3 2126 2716 519479491 519480093 0.000000e+00 904
13 TraesCS5B01G127000 chr2B 93.581 592 29 6 2127 2714 768564522 768563936 0.000000e+00 874
14 TraesCS5B01G127000 chr2B 86.864 236 30 1 1893 2127 42345236 42345471 2.070000e-66 263
15 TraesCS5B01G127000 chr6B 93.688 602 26 3 2127 2716 416735191 416734590 0.000000e+00 891
16 TraesCS5B01G127000 chr6B 93.069 606 26 5 2127 2716 41937659 41937054 0.000000e+00 872
17 TraesCS5B01G127000 chr6B 92.857 602 31 6 2127 2716 118420359 118420960 0.000000e+00 863
18 TraesCS5B01G127000 chr6B 92.845 601 32 3 2127 2716 46355956 46355356 0.000000e+00 861
19 TraesCS5B01G127000 chr6B 88.288 222 25 1 1907 2127 570650714 570650493 5.770000e-67 265
20 TraesCS5B01G127000 chr6A 92.555 591 43 1 2127 2716 559821565 559822155 0.000000e+00 846
21 TraesCS5B01G127000 chr6A 98.276 174 3 0 601 774 191222313 191222140 3.400000e-79 305
22 TraesCS5B01G127000 chr2A 91.906 593 45 2 2127 2716 503010599 503010007 0.000000e+00 826
23 TraesCS5B01G127000 chr4B 75.561 757 124 47 1013 1726 139138715 139137977 1.570000e-82 316
24 TraesCS5B01G127000 chr4B 87.446 231 26 3 1907 2135 34491465 34491236 2.070000e-66 263
25 TraesCS5B01G127000 chr4B 86.864 236 30 1 1893 2127 476308323 476308558 2.070000e-66 263
26 TraesCS5B01G127000 chr4B 92.571 175 8 2 602 775 147754585 147754755 2.090000e-61 246
27 TraesCS5B01G127000 chr1A 96.774 186 6 0 597 782 518659595 518659780 7.300000e-81 311
28 TraesCS5B01G127000 chr1A 99.020 102 1 0 669 770 310257363 310257262 1.660000e-42 183
29 TraesCS5B01G127000 chr1A 98.701 77 1 0 601 677 310257613 310257537 1.310000e-28 137
30 TraesCS5B01G127000 chr4A 75.395 760 123 47 1013 1726 478742871 478743612 2.630000e-80 309
31 TraesCS5B01G127000 chr4A 97.740 177 4 0 598 774 171201394 171201570 3.400000e-79 305
32 TraesCS5B01G127000 chr4D 74.967 759 128 46 1013 1726 97420858 97420117 2.650000e-75 292
33 TraesCS5B01G127000 chr4D 95.858 169 5 2 605 772 498765965 498765798 3.450000e-69 272
34 TraesCS5B01G127000 chr7D 88.136 236 27 1 1893 2127 205555862 205556097 2.060000e-71 279
35 TraesCS5B01G127000 chr7D 95.402 174 6 2 600 772 528035308 528035136 2.660000e-70 276
36 TraesCS5B01G127000 chr3D 95.376 173 6 2 601 772 527504570 527504399 9.580000e-70 274
37 TraesCS5B01G127000 chr3D 89.130 184 7 7 594 773 10725937 10725763 1.640000e-52 217
38 TraesCS5B01G127000 chr3B 88.444 225 25 1 1904 2127 657497476 657497700 1.240000e-68 270
39 TraesCS5B01G127000 chr3B 92.222 180 9 3 590 768 15056741 15056566 1.610000e-62 250
40 TraesCS5B01G127000 chr1B 92.432 185 9 2 596 779 24203932 24204112 2.680000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G127000 chr5B 232213140 232215855 2715 False 5016.0 5016 100.00000 1 2716 1 chr5B.!!$F1 2715
1 TraesCS5B01G127000 chr5B 615001930 615002531 601 True 885.0 885 93.52200 2127 2716 1 chr5B.!!$R2 589
2 TraesCS5B01G127000 chr5D 216098186 216099508 1322 False 1053.0 1725 95.25400 356 1864 2 chr5D.!!$F1 1508
3 TraesCS5B01G127000 chr5A 285213982 285214551 569 False 636.0 636 87.56600 53 597 1 chr5A.!!$F1 544
4 TraesCS5B01G127000 chr5A 285305504 285306998 1494 False 506.5 968 92.21075 53 1864 4 chr5A.!!$F2 1811
5 TraesCS5B01G127000 chr2B 519479491 519480093 602 False 904.0 904 94.03000 2126 2716 1 chr2B.!!$F2 590
6 TraesCS5B01G127000 chr2B 768563936 768564522 586 True 874.0 874 93.58100 2127 2714 1 chr2B.!!$R1 587
7 TraesCS5B01G127000 chr6B 416734590 416735191 601 True 891.0 891 93.68800 2127 2716 1 chr6B.!!$R3 589
8 TraesCS5B01G127000 chr6B 41937054 41937659 605 True 872.0 872 93.06900 2127 2716 1 chr6B.!!$R1 589
9 TraesCS5B01G127000 chr6B 118420359 118420960 601 False 863.0 863 92.85700 2127 2716 1 chr6B.!!$F1 589
10 TraesCS5B01G127000 chr6B 46355356 46355956 600 True 861.0 861 92.84500 2127 2716 1 chr6B.!!$R2 589
11 TraesCS5B01G127000 chr6A 559821565 559822155 590 False 846.0 846 92.55500 2127 2716 1 chr6A.!!$F1 589
12 TraesCS5B01G127000 chr2A 503010007 503010599 592 True 826.0 826 91.90600 2127 2716 1 chr2A.!!$R1 589
13 TraesCS5B01G127000 chr4B 139137977 139138715 738 True 316.0 316 75.56100 1013 1726 1 chr4B.!!$R2 713
14 TraesCS5B01G127000 chr4A 478742871 478743612 741 False 309.0 309 75.39500 1013 1726 1 chr4A.!!$F2 713
15 TraesCS5B01G127000 chr4D 97420117 97420858 741 True 292.0 292 74.96700 1013 1726 1 chr4D.!!$R1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 811 0.026285 GTGTATAGCAGCGCCGTTTG 59.974 55.0 2.29 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1905 0.030638 CAACCAACAGAAAGCCACGG 59.969 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.240945 GCAATTTGGTCCCAGTGTCG 59.759 55.000 0.00 0.00 0.00 4.35
20 21 1.890876 CAATTTGGTCCCAGTGTCGA 58.109 50.000 0.00 0.00 0.00 4.20
21 22 2.436417 CAATTTGGTCCCAGTGTCGAT 58.564 47.619 0.00 0.00 0.00 3.59
22 23 2.819608 CAATTTGGTCCCAGTGTCGATT 59.180 45.455 0.00 0.00 0.00 3.34
23 24 2.649531 TTTGGTCCCAGTGTCGATTT 57.350 45.000 0.00 0.00 0.00 2.17
24 25 3.773418 TTTGGTCCCAGTGTCGATTTA 57.227 42.857 0.00 0.00 0.00 1.40
25 26 3.328382 TTGGTCCCAGTGTCGATTTAG 57.672 47.619 0.00 0.00 0.00 1.85
26 27 2.253610 TGGTCCCAGTGTCGATTTAGT 58.746 47.619 0.00 0.00 0.00 2.24
27 28 3.433343 TGGTCCCAGTGTCGATTTAGTA 58.567 45.455 0.00 0.00 0.00 1.82
28 29 4.028131 TGGTCCCAGTGTCGATTTAGTAT 58.972 43.478 0.00 0.00 0.00 2.12
29 30 4.468510 TGGTCCCAGTGTCGATTTAGTATT 59.531 41.667 0.00 0.00 0.00 1.89
30 31 4.809426 GGTCCCAGTGTCGATTTAGTATTG 59.191 45.833 0.00 0.00 0.00 1.90
31 32 5.394883 GGTCCCAGTGTCGATTTAGTATTGA 60.395 44.000 0.00 0.00 0.00 2.57
32 33 5.749109 GTCCCAGTGTCGATTTAGTATTGAG 59.251 44.000 0.00 0.00 0.00 3.02
33 34 5.050490 CCCAGTGTCGATTTAGTATTGAGG 58.950 45.833 0.00 0.00 0.00 3.86
34 35 5.050490 CCAGTGTCGATTTAGTATTGAGGG 58.950 45.833 0.00 0.00 0.00 4.30
35 36 5.050490 CAGTGTCGATTTAGTATTGAGGGG 58.950 45.833 0.00 0.00 0.00 4.79
36 37 3.808174 GTGTCGATTTAGTATTGAGGGGC 59.192 47.826 0.00 0.00 0.00 5.80
37 38 3.452990 TGTCGATTTAGTATTGAGGGGCA 59.547 43.478 0.00 0.00 0.00 5.36
38 39 4.058817 GTCGATTTAGTATTGAGGGGCAG 58.941 47.826 0.00 0.00 0.00 4.85
39 40 2.808543 CGATTTAGTATTGAGGGGCAGC 59.191 50.000 0.00 0.00 0.00 5.25
40 41 2.729028 TTTAGTATTGAGGGGCAGCC 57.271 50.000 1.26 1.26 0.00 4.85
41 42 1.590591 TTAGTATTGAGGGGCAGCCA 58.409 50.000 15.19 0.00 0.00 4.75
42 43 1.819753 TAGTATTGAGGGGCAGCCAT 58.180 50.000 15.19 0.00 0.00 4.40
43 44 0.929244 AGTATTGAGGGGCAGCCATT 59.071 50.000 15.19 0.00 0.00 3.16
44 45 1.288932 AGTATTGAGGGGCAGCCATTT 59.711 47.619 15.19 0.00 0.00 2.32
45 46 1.683385 GTATTGAGGGGCAGCCATTTC 59.317 52.381 15.19 7.93 0.00 2.17
46 47 0.041535 ATTGAGGGGCAGCCATTTCA 59.958 50.000 15.19 10.62 0.00 2.69
47 48 0.041535 TTGAGGGGCAGCCATTTCAT 59.958 50.000 15.19 0.00 0.00 2.57
48 49 0.041535 TGAGGGGCAGCCATTTCATT 59.958 50.000 15.19 0.00 0.00 2.57
49 50 1.197812 GAGGGGCAGCCATTTCATTT 58.802 50.000 15.19 0.00 0.00 2.32
50 51 1.556451 GAGGGGCAGCCATTTCATTTT 59.444 47.619 15.19 0.00 0.00 1.82
51 52 1.987368 AGGGGCAGCCATTTCATTTTT 59.013 42.857 15.19 0.00 0.00 1.94
162 163 7.525688 TTCTCTGATATTCGTTACAAAGCTG 57.474 36.000 0.00 0.00 0.00 4.24
164 165 4.267690 TCTGATATTCGTTACAAAGCTGCG 59.732 41.667 0.00 0.00 0.00 5.18
174 175 0.887933 CAAAGCTGCGGGGTTTATGT 59.112 50.000 6.40 0.00 42.80 2.29
188 190 4.499357 GGGTTTATGTAAAAACGCCACACA 60.499 41.667 5.50 0.00 43.01 3.72
210 212 4.415150 CCGCTGACACTGGGCCAT 62.415 66.667 6.72 0.00 0.00 4.40
211 213 3.129502 CGCTGACACTGGGCCATG 61.130 66.667 6.72 10.55 0.00 3.66
212 214 2.352422 GCTGACACTGGGCCATGA 59.648 61.111 6.72 0.00 0.00 3.07
213 215 1.303561 GCTGACACTGGGCCATGAA 60.304 57.895 6.72 1.89 0.00 2.57
214 216 0.682209 GCTGACACTGGGCCATGAAT 60.682 55.000 6.72 0.00 0.00 2.57
215 217 1.386533 CTGACACTGGGCCATGAATC 58.613 55.000 6.72 3.32 0.00 2.52
216 218 0.697658 TGACACTGGGCCATGAATCA 59.302 50.000 6.72 6.24 0.00 2.57
217 219 1.340308 TGACACTGGGCCATGAATCAG 60.340 52.381 6.72 3.65 0.00 2.90
220 236 0.257039 ACTGGGCCATGAATCAGGAC 59.743 55.000 6.72 0.00 0.00 3.85
223 239 0.468226 GGGCCATGAATCAGGACGTA 59.532 55.000 4.39 0.00 31.98 3.57
265 281 3.316308 GCAGAGACAAGTTTTGACACCAT 59.684 43.478 0.00 0.00 0.00 3.55
271 287 6.935167 AGACAAGTTTTGACACCATTTTTCT 58.065 32.000 0.00 0.00 0.00 2.52
272 288 6.813152 AGACAAGTTTTGACACCATTTTTCTG 59.187 34.615 0.00 0.00 0.00 3.02
303 324 5.771469 CAACATCAAACTGCACATCCTAAA 58.229 37.500 0.00 0.00 0.00 1.85
308 329 3.896648 AACTGCACATCCTAAACAACG 57.103 42.857 0.00 0.00 0.00 4.10
312 334 2.095314 TGCACATCCTAAACAACGCATG 60.095 45.455 0.00 0.00 0.00 4.06
318 340 3.945346 TCCTAAACAACGCATGTACCAT 58.055 40.909 0.00 0.00 42.99 3.55
333 355 4.917385 TGTACCATCAGTGCATTTACCTT 58.083 39.130 0.00 0.00 36.01 3.50
363 388 1.008995 GCGCAAAGCCTGTTTCGAA 60.009 52.632 0.30 0.00 40.81 3.71
452 477 6.263168 ACCAACAGCTGCTTCCATATAATAAC 59.737 38.462 15.27 0.00 0.00 1.89
527 563 0.039437 GCTTCGGAGTTCTGTCGTCA 60.039 55.000 0.00 0.00 0.00 4.35
570 606 5.080969 TGGAACGAGGGTAATGAACTTAG 57.919 43.478 0.00 0.00 0.00 2.18
600 636 9.722184 TGCCATGATTGAGAATAATTTGAAAAA 57.278 25.926 0.00 0.00 0.00 1.94
601 637 9.977762 GCCATGATTGAGAATAATTTGAAAAAC 57.022 29.630 0.00 0.00 0.00 2.43
614 650 9.862585 ATAATTTGAAAAACGAAATTGCTTCAC 57.137 25.926 0.00 0.00 34.42 3.18
615 651 6.712241 TTTGAAAAACGAAATTGCTTCACA 57.288 29.167 0.00 0.00 33.17 3.58
616 652 5.694674 TGAAAAACGAAATTGCTTCACAC 57.305 34.783 0.00 0.00 33.17 3.82
617 653 5.164233 TGAAAAACGAAATTGCTTCACACA 58.836 33.333 0.00 0.00 33.17 3.72
618 654 5.061560 TGAAAAACGAAATTGCTTCACACAC 59.938 36.000 0.00 0.00 33.17 3.82
619 655 2.383298 ACGAAATTGCTTCACACACG 57.617 45.000 0.00 0.00 33.17 4.49
620 656 1.937223 ACGAAATTGCTTCACACACGA 59.063 42.857 0.00 0.00 33.17 4.35
621 657 2.548057 ACGAAATTGCTTCACACACGAT 59.452 40.909 0.00 0.00 33.17 3.73
622 658 3.743911 ACGAAATTGCTTCACACACGATA 59.256 39.130 0.00 0.00 33.17 2.92
623 659 4.081761 CGAAATTGCTTCACACACGATAC 58.918 43.478 0.00 0.00 33.17 2.24
624 660 4.376920 CGAAATTGCTTCACACACGATACA 60.377 41.667 0.00 0.00 33.17 2.29
625 661 4.404507 AATTGCTTCACACACGATACAC 57.595 40.909 0.00 0.00 0.00 2.90
626 662 2.517650 TGCTTCACACACGATACACA 57.482 45.000 0.00 0.00 0.00 3.72
627 663 3.038788 TGCTTCACACACGATACACAT 57.961 42.857 0.00 0.00 0.00 3.21
628 664 2.736192 TGCTTCACACACGATACACATG 59.264 45.455 0.00 0.00 0.00 3.21
629 665 2.993220 GCTTCACACACGATACACATGA 59.007 45.455 0.00 0.00 0.00 3.07
630 666 3.431912 GCTTCACACACGATACACATGAA 59.568 43.478 0.00 0.00 0.00 2.57
631 667 4.666655 GCTTCACACACGATACACATGAAC 60.667 45.833 0.00 0.00 0.00 3.18
632 668 2.983803 TCACACACGATACACATGAACG 59.016 45.455 0.00 0.05 0.00 3.95
633 669 2.983803 CACACACGATACACATGAACGA 59.016 45.455 0.00 0.00 0.00 3.85
634 670 3.612423 CACACACGATACACATGAACGAT 59.388 43.478 0.00 0.00 0.00 3.73
635 671 3.857665 ACACACGATACACATGAACGATC 59.142 43.478 0.00 0.00 0.00 3.69
636 672 4.105486 CACACGATACACATGAACGATCT 58.895 43.478 0.00 0.00 0.00 2.75
637 673 4.027377 CACACGATACACATGAACGATCTG 60.027 45.833 0.00 0.00 0.00 2.90
638 674 3.060940 CACGATACACATGAACGATCTGC 60.061 47.826 0.00 0.00 0.00 4.26
640 676 2.931512 TACACATGAACGATCTGCGA 57.068 45.000 0.00 0.00 44.57 5.10
641 677 2.078849 ACACATGAACGATCTGCGAA 57.921 45.000 0.00 0.00 44.57 4.70
642 678 1.726791 ACACATGAACGATCTGCGAAC 59.273 47.619 0.00 0.00 44.57 3.95
643 679 0.992072 ACATGAACGATCTGCGAACG 59.008 50.000 0.00 6.66 44.57 3.95
644 680 1.268265 CATGAACGATCTGCGAACGA 58.732 50.000 13.18 0.00 44.57 3.85
645 681 1.854743 CATGAACGATCTGCGAACGAT 59.145 47.619 13.18 3.66 44.57 3.73
646 682 1.268265 TGAACGATCTGCGAACGATG 58.732 50.000 13.18 0.00 44.57 3.84
647 683 0.043822 GAACGATCTGCGAACGATGC 60.044 55.000 13.18 0.00 44.57 3.91
648 684 1.421410 AACGATCTGCGAACGATGCC 61.421 55.000 13.18 0.00 44.57 4.40
649 685 1.589993 CGATCTGCGAACGATGCCT 60.590 57.895 0.00 0.00 44.57 4.75
650 686 1.148157 CGATCTGCGAACGATGCCTT 61.148 55.000 0.00 0.00 44.57 4.35
651 687 0.579156 GATCTGCGAACGATGCCTTC 59.421 55.000 0.00 0.00 0.00 3.46
652 688 0.176680 ATCTGCGAACGATGCCTTCT 59.823 50.000 0.00 0.00 0.00 2.85
653 689 0.458543 TCTGCGAACGATGCCTTCTC 60.459 55.000 0.00 0.00 0.00 2.87
654 690 0.459237 CTGCGAACGATGCCTTCTCT 60.459 55.000 0.00 0.00 0.00 3.10
655 691 0.815095 TGCGAACGATGCCTTCTCTA 59.185 50.000 0.00 0.00 0.00 2.43
656 692 1.201343 GCGAACGATGCCTTCTCTAC 58.799 55.000 0.00 0.00 0.00 2.59
657 693 1.467875 CGAACGATGCCTTCTCTACG 58.532 55.000 0.00 0.00 0.00 3.51
658 694 1.063616 CGAACGATGCCTTCTCTACGA 59.936 52.381 0.00 0.00 0.00 3.43
659 695 2.477357 CGAACGATGCCTTCTCTACGAA 60.477 50.000 0.00 0.00 0.00 3.85
660 696 3.707793 GAACGATGCCTTCTCTACGAAT 58.292 45.455 0.00 0.00 0.00 3.34
661 697 3.357166 ACGATGCCTTCTCTACGAATC 57.643 47.619 0.00 0.00 0.00 2.52
662 698 2.688446 ACGATGCCTTCTCTACGAATCA 59.312 45.455 0.00 0.00 0.00 2.57
663 699 3.243234 ACGATGCCTTCTCTACGAATCAG 60.243 47.826 0.00 0.00 0.00 2.90
664 700 2.586258 TGCCTTCTCTACGAATCAGC 57.414 50.000 0.00 0.00 0.00 4.26
665 701 2.103373 TGCCTTCTCTACGAATCAGCT 58.897 47.619 0.00 0.00 0.00 4.24
666 702 3.288092 TGCCTTCTCTACGAATCAGCTA 58.712 45.455 0.00 0.00 0.00 3.32
667 703 3.699538 TGCCTTCTCTACGAATCAGCTAA 59.300 43.478 0.00 0.00 0.00 3.09
668 704 4.159693 TGCCTTCTCTACGAATCAGCTAAA 59.840 41.667 0.00 0.00 0.00 1.85
669 705 5.109903 GCCTTCTCTACGAATCAGCTAAAA 58.890 41.667 0.00 0.00 0.00 1.52
670 706 5.581085 GCCTTCTCTACGAATCAGCTAAAAA 59.419 40.000 0.00 0.00 0.00 1.94
689 725 2.812358 AAACAAAACCAATCGCCTCC 57.188 45.000 0.00 0.00 0.00 4.30
690 726 1.995376 AACAAAACCAATCGCCTCCT 58.005 45.000 0.00 0.00 0.00 3.69
691 727 1.247567 ACAAAACCAATCGCCTCCTG 58.752 50.000 0.00 0.00 0.00 3.86
692 728 0.109132 CAAAACCAATCGCCTCCTGC 60.109 55.000 0.00 0.00 0.00 4.85
701 737 4.373116 GCCTCCTGCGTTCACGGA 62.373 66.667 0.81 0.00 40.23 4.69
702 738 2.432628 CCTCCTGCGTTCACGGAC 60.433 66.667 0.81 0.00 40.23 4.79
703 739 2.805353 CTCCTGCGTTCACGGACG 60.805 66.667 0.81 0.00 45.40 4.79
709 745 4.054455 CGTTCACGGACGCGGTTG 62.054 66.667 12.47 0.82 36.12 3.77
710 746 3.708734 GTTCACGGACGCGGTTGG 61.709 66.667 12.47 0.00 0.00 3.77
711 747 3.914117 TTCACGGACGCGGTTGGA 61.914 61.111 12.47 0.00 0.00 3.53
712 748 3.851845 TTCACGGACGCGGTTGGAG 62.852 63.158 12.47 0.00 0.00 3.86
725 761 2.934932 TGGAGCTGCCACATGGGA 60.935 61.111 1.53 0.00 43.33 4.37
726 762 2.311070 TGGAGCTGCCACATGGGAT 61.311 57.895 1.53 0.00 43.33 3.85
727 763 1.527844 GGAGCTGCCACATGGGATC 60.528 63.158 0.00 0.00 40.01 3.36
728 764 1.890979 GAGCTGCCACATGGGATCG 60.891 63.158 0.00 0.00 40.01 3.69
729 765 2.124570 GCTGCCACATGGGATCGT 60.125 61.111 0.00 0.00 40.01 3.73
730 766 2.182842 GCTGCCACATGGGATCGTC 61.183 63.158 0.00 0.00 40.01 4.20
731 767 1.524621 CTGCCACATGGGATCGTCC 60.525 63.158 0.00 0.00 40.01 4.79
732 768 2.256072 CTGCCACATGGGATCGTCCA 62.256 60.000 0.00 0.00 38.64 4.02
739 775 0.676184 ATGGGATCGTCCATGAGTCG 59.324 55.000 2.95 0.00 45.13 4.18
740 776 1.364171 GGGATCGTCCATGAGTCGG 59.636 63.158 0.00 0.00 38.64 4.79
741 777 1.300233 GGATCGTCCATGAGTCGGC 60.300 63.158 0.00 0.00 36.28 5.54
742 778 1.736586 GATCGTCCATGAGTCGGCT 59.263 57.895 0.00 0.00 0.00 5.52
743 779 0.596083 GATCGTCCATGAGTCGGCTG 60.596 60.000 0.00 0.00 0.00 4.85
744 780 2.635229 ATCGTCCATGAGTCGGCTGC 62.635 60.000 0.00 0.00 0.00 5.25
745 781 2.581354 GTCCATGAGTCGGCTGCT 59.419 61.111 0.00 0.00 0.00 4.24
746 782 1.812922 GTCCATGAGTCGGCTGCTG 60.813 63.158 0.00 0.95 0.00 4.41
747 783 2.513204 CCATGAGTCGGCTGCTGG 60.513 66.667 8.89 0.00 0.00 4.85
748 784 2.513204 CATGAGTCGGCTGCTGGG 60.513 66.667 8.89 0.00 0.00 4.45
749 785 3.005539 ATGAGTCGGCTGCTGGGT 61.006 61.111 8.89 0.00 0.00 4.51
750 786 2.596851 ATGAGTCGGCTGCTGGGTT 61.597 57.895 8.89 0.00 0.00 4.11
751 787 2.743928 GAGTCGGCTGCTGGGTTG 60.744 66.667 8.89 0.00 0.00 3.77
752 788 3.537206 GAGTCGGCTGCTGGGTTGT 62.537 63.158 8.89 0.00 0.00 3.32
753 789 3.050275 GTCGGCTGCTGGGTTGTC 61.050 66.667 8.89 0.00 0.00 3.18
754 790 4.680237 TCGGCTGCTGGGTTGTCG 62.680 66.667 8.89 0.00 0.00 4.35
755 791 4.988598 CGGCTGCTGGGTTGTCGT 62.989 66.667 0.00 0.00 0.00 4.34
756 792 3.357079 GGCTGCTGGGTTGTCGTG 61.357 66.667 0.00 0.00 0.00 4.35
757 793 2.591715 GCTGCTGGGTTGTCGTGT 60.592 61.111 0.00 0.00 0.00 4.49
758 794 2.896801 GCTGCTGGGTTGTCGTGTG 61.897 63.158 0.00 0.00 0.00 3.82
759 795 1.523711 CTGCTGGGTTGTCGTGTGT 60.524 57.895 0.00 0.00 0.00 3.72
760 796 0.249699 CTGCTGGGTTGTCGTGTGTA 60.250 55.000 0.00 0.00 0.00 2.90
761 797 0.394938 TGCTGGGTTGTCGTGTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
762 798 1.619332 TGCTGGGTTGTCGTGTGTATA 59.381 47.619 0.00 0.00 0.00 1.47
763 799 2.268298 GCTGGGTTGTCGTGTGTATAG 58.732 52.381 0.00 0.00 0.00 1.31
764 800 2.268298 CTGGGTTGTCGTGTGTATAGC 58.732 52.381 0.00 0.00 0.00 2.97
765 801 1.619332 TGGGTTGTCGTGTGTATAGCA 59.381 47.619 0.00 0.00 0.00 3.49
766 802 2.268298 GGGTTGTCGTGTGTATAGCAG 58.732 52.381 0.00 0.00 0.00 4.24
767 803 1.659098 GGTTGTCGTGTGTATAGCAGC 59.341 52.381 0.00 0.00 0.00 5.25
768 804 1.320555 GTTGTCGTGTGTATAGCAGCG 59.679 52.381 0.00 0.00 0.00 5.18
769 805 0.800683 TGTCGTGTGTATAGCAGCGC 60.801 55.000 0.00 0.00 0.00 5.92
770 806 1.226859 TCGTGTGTATAGCAGCGCC 60.227 57.895 2.29 0.00 0.00 6.53
771 807 2.576893 CGTGTGTATAGCAGCGCCG 61.577 63.158 2.29 0.00 0.00 6.46
772 808 1.518572 GTGTGTATAGCAGCGCCGT 60.519 57.895 2.29 0.00 0.00 5.68
773 809 1.082117 GTGTGTATAGCAGCGCCGTT 61.082 55.000 2.29 0.00 0.00 4.44
774 810 0.390603 TGTGTATAGCAGCGCCGTTT 60.391 50.000 2.29 0.00 0.00 3.60
775 811 0.026285 GTGTATAGCAGCGCCGTTTG 59.974 55.000 2.29 0.00 0.00 2.93
776 812 0.108567 TGTATAGCAGCGCCGTTTGA 60.109 50.000 2.29 0.00 0.00 2.69
777 813 1.003851 GTATAGCAGCGCCGTTTGAA 58.996 50.000 2.29 0.00 0.00 2.69
778 814 1.395608 GTATAGCAGCGCCGTTTGAAA 59.604 47.619 2.29 0.00 0.00 2.69
779 815 0.878416 ATAGCAGCGCCGTTTGAAAA 59.122 45.000 2.29 0.00 0.00 2.29
780 816 0.663688 TAGCAGCGCCGTTTGAAAAA 59.336 45.000 2.29 0.00 0.00 1.94
781 817 0.031994 AGCAGCGCCGTTTGAAAAAT 59.968 45.000 2.29 0.00 0.00 1.82
787 823 2.097444 GCGCCGTTTGAAAAATGACAAG 60.097 45.455 0.00 0.00 0.00 3.16
798 834 3.370840 AAATGACAAGCATAGAGGCCA 57.629 42.857 5.01 0.00 35.78 5.36
913 952 5.406649 CAACAGCACAAACTCTAAACCAAA 58.593 37.500 0.00 0.00 0.00 3.28
919 958 3.634910 ACAAACTCTAAACCAAACCGCAT 59.365 39.130 0.00 0.00 0.00 4.73
945 984 4.388499 GGCCGCCGAGGAGAAACA 62.388 66.667 0.00 0.00 45.00 2.83
987 1026 2.887568 CACACCATCGCGCCTCTC 60.888 66.667 0.00 0.00 0.00 3.20
988 1027 4.148825 ACACCATCGCGCCTCTCC 62.149 66.667 0.00 0.00 0.00 3.71
989 1028 4.147449 CACCATCGCGCCTCTCCA 62.147 66.667 0.00 0.00 0.00 3.86
990 1029 4.148825 ACCATCGCGCCTCTCCAC 62.149 66.667 0.00 0.00 0.00 4.02
991 1030 4.899239 CCATCGCGCCTCTCCACC 62.899 72.222 0.00 0.00 0.00 4.61
992 1031 4.899239 CATCGCGCCTCTCCACCC 62.899 72.222 0.00 0.00 0.00 4.61
1131 1179 1.142870 CTCAAGGAGAACACCAACCCA 59.857 52.381 0.00 0.00 0.00 4.51
1142 1190 2.503356 ACACCAACCCAAAATGCTTCAA 59.497 40.909 0.00 0.00 0.00 2.69
1143 1215 3.136260 ACACCAACCCAAAATGCTTCAAT 59.864 39.130 0.00 0.00 0.00 2.57
1382 1473 1.140312 TATCCTGCATGGGGAAGGTC 58.860 55.000 0.00 0.00 36.37 3.85
1745 1879 2.287909 GGGCTGCTGAATACTACTCGAG 60.288 54.545 11.84 11.84 0.00 4.04
1771 1905 5.416326 ACTTGTAGTAGATGACAGTCTGGTC 59.584 44.000 4.53 0.51 38.29 4.02
1864 2000 5.488919 AGGATGAGGATTGAGTTTGAGGTAA 59.511 40.000 0.00 0.00 0.00 2.85
1865 2001 5.819901 GGATGAGGATTGAGTTTGAGGTAAG 59.180 44.000 0.00 0.00 0.00 2.34
1866 2002 5.165961 TGAGGATTGAGTTTGAGGTAAGG 57.834 43.478 0.00 0.00 0.00 2.69
1867 2003 4.019321 TGAGGATTGAGTTTGAGGTAAGGG 60.019 45.833 0.00 0.00 0.00 3.95
1868 2004 3.267031 AGGATTGAGTTTGAGGTAAGGGG 59.733 47.826 0.00 0.00 0.00 4.79
1869 2005 3.010250 GGATTGAGTTTGAGGTAAGGGGT 59.990 47.826 0.00 0.00 0.00 4.95
1870 2006 4.508584 GGATTGAGTTTGAGGTAAGGGGTT 60.509 45.833 0.00 0.00 0.00 4.11
1871 2007 5.280830 GGATTGAGTTTGAGGTAAGGGGTTA 60.281 44.000 0.00 0.00 0.00 2.85
1872 2008 5.649970 TTGAGTTTGAGGTAAGGGGTTAA 57.350 39.130 0.00 0.00 0.00 2.01
1873 2009 4.976864 TGAGTTTGAGGTAAGGGGTTAAC 58.023 43.478 0.00 0.00 0.00 2.01
1874 2010 4.661709 TGAGTTTGAGGTAAGGGGTTAACT 59.338 41.667 5.42 0.00 0.00 2.24
1875 2011 5.845614 TGAGTTTGAGGTAAGGGGTTAACTA 59.154 40.000 5.42 0.00 0.00 2.24
1876 2012 6.119240 AGTTTGAGGTAAGGGGTTAACTAC 57.881 41.667 5.42 0.03 0.00 2.73
1877 2013 5.608015 AGTTTGAGGTAAGGGGTTAACTACA 59.392 40.000 5.42 0.00 0.00 2.74
1878 2014 5.488262 TTGAGGTAAGGGGTTAACTACAC 57.512 43.478 5.42 0.00 0.00 2.90
1887 2023 4.281898 GGGTTAACTACACCATGACTGT 57.718 45.455 5.42 0.00 35.80 3.55
1888 2024 4.251268 GGGTTAACTACACCATGACTGTC 58.749 47.826 5.42 0.00 35.80 3.51
1889 2025 4.262721 GGGTTAACTACACCATGACTGTCA 60.263 45.833 13.60 13.60 35.80 3.58
1890 2026 5.488341 GGTTAACTACACCATGACTGTCAT 58.512 41.667 17.24 17.24 37.65 3.06
1891 2027 6.351541 GGGTTAACTACACCATGACTGTCATA 60.352 42.308 21.88 6.51 34.28 2.15
1892 2028 7.272978 GGTTAACTACACCATGACTGTCATAT 58.727 38.462 21.88 11.29 34.28 1.78
1893 2029 8.418662 GGTTAACTACACCATGACTGTCATATA 58.581 37.037 21.88 11.52 34.28 0.86
1894 2030 9.245962 GTTAACTACACCATGACTGTCATATAC 57.754 37.037 21.88 4.64 34.28 1.47
1895 2031 7.661536 AACTACACCATGACTGTCATATACT 57.338 36.000 21.88 8.73 34.28 2.12
1896 2032 8.762481 AACTACACCATGACTGTCATATACTA 57.238 34.615 21.88 9.32 34.28 1.82
1897 2033 8.941995 ACTACACCATGACTGTCATATACTAT 57.058 34.615 21.88 9.18 34.28 2.12
1898 2034 9.015367 ACTACACCATGACTGTCATATACTATC 57.985 37.037 21.88 0.00 34.28 2.08
1899 2035 9.237187 CTACACCATGACTGTCATATACTATCT 57.763 37.037 21.88 0.00 34.28 1.98
1900 2036 8.484214 ACACCATGACTGTCATATACTATCTT 57.516 34.615 21.88 0.00 34.28 2.40
1901 2037 8.928448 ACACCATGACTGTCATATACTATCTTT 58.072 33.333 21.88 0.00 34.28 2.52
1919 2055 8.265764 ACTATCTTTATCTTGGTTTACTGGTCC 58.734 37.037 0.00 0.00 0.00 4.46
1920 2056 5.812286 TCTTTATCTTGGTTTACTGGTCCC 58.188 41.667 0.00 0.00 0.00 4.46
1921 2057 4.579647 TTATCTTGGTTTACTGGTCCCC 57.420 45.455 0.00 0.00 0.00 4.81
1922 2058 0.688487 TCTTGGTTTACTGGTCCCCG 59.312 55.000 0.00 0.00 0.00 5.73
1923 2059 0.399075 CTTGGTTTACTGGTCCCCGT 59.601 55.000 0.00 0.00 0.00 5.28
1924 2060 0.845337 TTGGTTTACTGGTCCCCGTT 59.155 50.000 0.00 0.00 0.00 4.44
1925 2061 0.108963 TGGTTTACTGGTCCCCGTTG 59.891 55.000 0.00 0.00 0.00 4.10
1926 2062 0.109153 GGTTTACTGGTCCCCGTTGT 59.891 55.000 0.00 0.00 0.00 3.32
1927 2063 1.347378 GGTTTACTGGTCCCCGTTGTA 59.653 52.381 0.00 0.00 0.00 2.41
1928 2064 2.224499 GGTTTACTGGTCCCCGTTGTAA 60.224 50.000 0.00 0.00 0.00 2.41
1929 2065 3.559811 GGTTTACTGGTCCCCGTTGTAAT 60.560 47.826 0.00 0.00 0.00 1.89
1930 2066 3.615224 TTACTGGTCCCCGTTGTAATC 57.385 47.619 0.00 0.00 0.00 1.75
1931 2067 1.354101 ACTGGTCCCCGTTGTAATCA 58.646 50.000 0.00 0.00 0.00 2.57
1932 2068 1.278127 ACTGGTCCCCGTTGTAATCAG 59.722 52.381 0.00 0.00 0.00 2.90
1933 2069 1.278127 CTGGTCCCCGTTGTAATCAGT 59.722 52.381 0.00 0.00 0.00 3.41
1934 2070 1.002659 TGGTCCCCGTTGTAATCAGTG 59.997 52.381 0.00 0.00 0.00 3.66
1935 2071 1.002773 GGTCCCCGTTGTAATCAGTGT 59.997 52.381 0.00 0.00 0.00 3.55
1936 2072 2.344025 GTCCCCGTTGTAATCAGTGTC 58.656 52.381 0.00 0.00 0.00 3.67
1937 2073 1.067425 TCCCCGTTGTAATCAGTGTCG 60.067 52.381 0.00 0.00 0.00 4.35
1938 2074 1.067425 CCCCGTTGTAATCAGTGTCGA 60.067 52.381 0.00 0.00 0.00 4.20
1939 2075 2.610976 CCCCGTTGTAATCAGTGTCGAA 60.611 50.000 0.00 0.00 0.00 3.71
1940 2076 3.259064 CCCGTTGTAATCAGTGTCGAAT 58.741 45.455 0.00 0.00 0.00 3.34
1941 2077 3.682858 CCCGTTGTAATCAGTGTCGAATT 59.317 43.478 0.00 0.00 0.00 2.17
1942 2078 4.153475 CCCGTTGTAATCAGTGTCGAATTT 59.847 41.667 0.00 0.00 0.00 1.82
1943 2079 5.334569 CCCGTTGTAATCAGTGTCGAATTTT 60.335 40.000 0.00 0.00 0.00 1.82
1944 2080 6.128499 CCCGTTGTAATCAGTGTCGAATTTTA 60.128 38.462 0.00 0.00 0.00 1.52
1945 2081 7.292292 CCGTTGTAATCAGTGTCGAATTTTAA 58.708 34.615 0.00 0.00 0.00 1.52
1946 2082 7.960738 CCGTTGTAATCAGTGTCGAATTTTAAT 59.039 33.333 0.00 0.00 0.00 1.40
1947 2083 8.985694 CGTTGTAATCAGTGTCGAATTTTAATC 58.014 33.333 0.00 0.00 0.00 1.75
1948 2084 9.820229 GTTGTAATCAGTGTCGAATTTTAATCA 57.180 29.630 0.00 0.00 0.00 2.57
1976 2112 8.830201 AATTTAACTAGCAAAATGTTCATGCA 57.170 26.923 0.00 0.00 42.45 3.96
1977 2113 9.439500 AATTTAACTAGCAAAATGTTCATGCAT 57.561 25.926 0.00 0.00 42.45 3.96
1978 2114 7.815398 TTAACTAGCAAAATGTTCATGCATG 57.185 32.000 21.07 21.07 42.45 4.06
1979 2115 5.395682 ACTAGCAAAATGTTCATGCATGT 57.604 34.783 25.43 4.01 42.45 3.21
1980 2116 5.786311 ACTAGCAAAATGTTCATGCATGTT 58.214 33.333 25.43 10.35 42.45 2.71
1981 2117 6.923012 ACTAGCAAAATGTTCATGCATGTTA 58.077 32.000 25.43 12.71 42.45 2.41
1982 2118 7.549839 ACTAGCAAAATGTTCATGCATGTTAT 58.450 30.769 25.43 15.09 42.45 1.89
1983 2119 8.685427 ACTAGCAAAATGTTCATGCATGTTATA 58.315 29.630 25.43 13.71 42.45 0.98
1984 2120 9.518906 CTAGCAAAATGTTCATGCATGTTATAA 57.481 29.630 25.43 10.35 42.45 0.98
1985 2121 8.774890 AGCAAAATGTTCATGCATGTTATAAA 57.225 26.923 25.43 9.97 42.45 1.40
1986 2122 9.217278 AGCAAAATGTTCATGCATGTTATAAAA 57.783 25.926 25.43 8.76 42.45 1.52
1987 2123 9.823098 GCAAAATGTTCATGCATGTTATAAAAA 57.177 25.926 25.43 8.38 39.81 1.94
2018 2154 8.874745 ATCATTGAAAACTACGTTCAAATACG 57.125 30.769 3.90 0.00 45.43 3.06
2019 2155 8.074474 TCATTGAAAACTACGTTCAAATACGA 57.926 30.769 3.90 0.00 45.43 3.43
2020 2156 8.549548 TCATTGAAAACTACGTTCAAATACGAA 58.450 29.630 3.90 0.00 45.43 3.85
2021 2157 8.615585 CATTGAAAACTACGTTCAAATACGAAC 58.384 33.333 3.90 0.00 45.43 3.95
2022 2158 6.648502 TGAAAACTACGTTCAAATACGAACC 58.351 36.000 0.00 0.00 43.99 3.62
2023 2159 5.596268 AAACTACGTTCAAATACGAACCC 57.404 39.130 0.00 0.00 43.99 4.11
2024 2160 4.255833 ACTACGTTCAAATACGAACCCA 57.744 40.909 0.00 0.00 43.99 4.51
2025 2161 4.630111 ACTACGTTCAAATACGAACCCAA 58.370 39.130 0.00 0.00 43.99 4.12
2026 2162 3.883631 ACGTTCAAATACGAACCCAAC 57.116 42.857 2.93 0.00 43.99 3.77
2027 2163 2.221517 ACGTTCAAATACGAACCCAACG 59.778 45.455 2.93 0.00 43.99 4.10
2028 2164 2.475864 CGTTCAAATACGAACCCAACGA 59.524 45.455 0.00 0.00 43.99 3.85
2029 2165 3.123959 CGTTCAAATACGAACCCAACGAT 59.876 43.478 0.00 0.00 43.99 3.73
2030 2166 4.326817 CGTTCAAATACGAACCCAACGATA 59.673 41.667 0.00 0.00 43.99 2.92
2031 2167 5.005971 CGTTCAAATACGAACCCAACGATAT 59.994 40.000 0.00 0.00 43.99 1.63
2032 2168 6.198778 CGTTCAAATACGAACCCAACGATATA 59.801 38.462 0.00 0.00 43.99 0.86
2033 2169 7.254050 CGTTCAAATACGAACCCAACGATATAA 60.254 37.037 0.00 0.00 43.99 0.98
2034 2170 8.553696 GTTCAAATACGAACCCAACGATATAAT 58.446 33.333 0.00 0.00 39.52 1.28
2035 2171 8.665643 TCAAATACGAACCCAACGATATAATT 57.334 30.769 0.00 0.00 34.70 1.40
2036 2172 9.111613 TCAAATACGAACCCAACGATATAATTT 57.888 29.630 0.00 0.00 34.70 1.82
2037 2173 9.724839 CAAATACGAACCCAACGATATAATTTT 57.275 29.630 0.00 0.00 34.70 1.82
2039 2175 9.724839 AATACGAACCCAACGATATAATTTTTG 57.275 29.630 0.00 0.00 34.70 2.44
2040 2176 7.148355 ACGAACCCAACGATATAATTTTTGT 57.852 32.000 0.00 0.00 34.70 2.83
2041 2177 8.266392 ACGAACCCAACGATATAATTTTTGTA 57.734 30.769 0.00 0.00 34.70 2.41
2042 2178 8.728833 ACGAACCCAACGATATAATTTTTGTAA 58.271 29.630 0.00 0.00 34.70 2.41
2043 2179 9.557338 CGAACCCAACGATATAATTTTTGTAAA 57.443 29.630 0.00 0.00 0.00 2.01
2061 2197 9.877178 TTTTGTAAACATCCACTAACATTTTGT 57.123 25.926 0.00 0.00 0.00 2.83
2062 2198 9.522804 TTTGTAAACATCCACTAACATTTTGTC 57.477 29.630 0.00 0.00 0.00 3.18
2063 2199 8.226819 TGTAAACATCCACTAACATTTTGTCA 57.773 30.769 0.00 0.00 0.00 3.58
2064 2200 8.349245 TGTAAACATCCACTAACATTTTGTCAG 58.651 33.333 0.00 0.00 0.00 3.51
2065 2201 6.959639 AACATCCACTAACATTTTGTCAGT 57.040 33.333 0.00 0.00 26.10 3.41
2066 2202 6.959639 ACATCCACTAACATTTTGTCAGTT 57.040 33.333 0.00 0.00 22.66 3.16
2067 2203 8.458573 AACATCCACTAACATTTTGTCAGTTA 57.541 30.769 0.00 0.00 22.66 2.24
2068 2204 8.458573 ACATCCACTAACATTTTGTCAGTTAA 57.541 30.769 0.00 0.00 22.66 2.01
2069 2205 8.908903 ACATCCACTAACATTTTGTCAGTTAAA 58.091 29.630 0.00 0.00 22.66 1.52
2070 2206 9.912634 CATCCACTAACATTTTGTCAGTTAAAT 57.087 29.630 0.00 0.00 22.66 1.40
2072 2208 9.349713 TCCACTAACATTTTGTCAGTTAAATCT 57.650 29.630 0.00 0.00 22.66 2.40
2073 2209 9.965824 CCACTAACATTTTGTCAGTTAAATCTT 57.034 29.630 0.00 0.00 22.66 2.40
2104 2240 7.977789 AAATTTAGCACAAATTACAAAGGGG 57.022 32.000 8.84 0.00 30.38 4.79
2105 2241 4.529109 TTAGCACAAATTACAAAGGGGC 57.471 40.909 0.00 0.00 0.00 5.80
2106 2242 1.623311 AGCACAAATTACAAAGGGGCC 59.377 47.619 0.00 0.00 0.00 5.80
2107 2243 1.346068 GCACAAATTACAAAGGGGCCA 59.654 47.619 4.39 0.00 0.00 5.36
2108 2244 2.224402 GCACAAATTACAAAGGGGCCAA 60.224 45.455 4.39 0.00 0.00 4.52
2109 2245 3.558958 GCACAAATTACAAAGGGGCCAAT 60.559 43.478 4.39 0.00 0.00 3.16
2110 2246 4.323104 GCACAAATTACAAAGGGGCCAATA 60.323 41.667 4.39 0.00 0.00 1.90
2111 2247 5.799213 CACAAATTACAAAGGGGCCAATAA 58.201 37.500 4.39 0.00 0.00 1.40
2112 2248 6.234177 CACAAATTACAAAGGGGCCAATAAA 58.766 36.000 4.39 0.00 0.00 1.40
2113 2249 6.148645 CACAAATTACAAAGGGGCCAATAAAC 59.851 38.462 4.39 0.00 0.00 2.01
2114 2250 5.429681 AATTACAAAGGGGCCAATAAACC 57.570 39.130 4.39 0.00 0.00 3.27
2115 2251 2.407340 ACAAAGGGGCCAATAAACCA 57.593 45.000 4.39 0.00 0.00 3.67
2116 2252 2.256306 ACAAAGGGGCCAATAAACCAG 58.744 47.619 4.39 0.00 0.00 4.00
2117 2253 1.554617 CAAAGGGGCCAATAAACCAGG 59.445 52.381 4.39 0.00 0.00 4.45
2118 2254 1.089123 AAGGGGCCAATAAACCAGGA 58.911 50.000 4.39 0.00 0.00 3.86
2119 2255 0.335019 AGGGGCCAATAAACCAGGAC 59.665 55.000 4.39 0.00 0.00 3.85
2120 2256 1.035385 GGGGCCAATAAACCAGGACG 61.035 60.000 4.39 0.00 0.00 4.79
2121 2257 1.035385 GGGCCAATAAACCAGGACGG 61.035 60.000 4.39 0.00 42.50 4.79
2122 2258 0.034863 GGCCAATAAACCAGGACGGA 60.035 55.000 0.00 0.00 38.63 4.69
2123 2259 1.379527 GCCAATAAACCAGGACGGAG 58.620 55.000 0.00 0.00 38.63 4.63
2124 2260 2.017113 GCCAATAAACCAGGACGGAGG 61.017 57.143 0.00 0.00 38.63 4.30
2178 2314 4.261578 AGTCTCCACGGTTTATTTTCGA 57.738 40.909 0.00 0.00 0.00 3.71
2208 2346 1.149782 TCTCTCTCCTCCCACCACCT 61.150 60.000 0.00 0.00 0.00 4.00
2269 2407 8.585018 CCACTCTTTATTACAACCAGGATTTTT 58.415 33.333 0.00 0.00 0.00 1.94
2670 2821 9.581289 TTTTCTATGTTTTCCACCTATTGAAGA 57.419 29.630 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.240945 CGACACTGGGACCAAATTGC 59.759 55.000 0.00 0.00 0.00 3.56
1 2 1.890876 TCGACACTGGGACCAAATTG 58.109 50.000 0.00 0.00 0.00 2.32
2 3 2.879103 ATCGACACTGGGACCAAATT 57.121 45.000 0.00 0.00 0.00 1.82
3 4 2.879103 AATCGACACTGGGACCAAAT 57.121 45.000 0.00 0.00 0.00 2.32
4 5 2.649531 AAATCGACACTGGGACCAAA 57.350 45.000 0.00 0.00 0.00 3.28
5 6 2.635915 ACTAAATCGACACTGGGACCAA 59.364 45.455 0.00 0.00 0.00 3.67
6 7 2.253610 ACTAAATCGACACTGGGACCA 58.746 47.619 0.00 0.00 0.00 4.02
7 8 4.667519 ATACTAAATCGACACTGGGACC 57.332 45.455 0.00 0.00 0.00 4.46
8 9 5.657474 TCAATACTAAATCGACACTGGGAC 58.343 41.667 0.00 0.00 0.00 4.46
9 10 5.163447 CCTCAATACTAAATCGACACTGGGA 60.163 44.000 0.00 0.00 0.00 4.37
10 11 5.050490 CCTCAATACTAAATCGACACTGGG 58.950 45.833 0.00 0.00 0.00 4.45
11 12 5.050490 CCCTCAATACTAAATCGACACTGG 58.950 45.833 0.00 0.00 0.00 4.00
12 13 5.050490 CCCCTCAATACTAAATCGACACTG 58.950 45.833 0.00 0.00 0.00 3.66
13 14 4.443034 GCCCCTCAATACTAAATCGACACT 60.443 45.833 0.00 0.00 0.00 3.55
14 15 3.808174 GCCCCTCAATACTAAATCGACAC 59.192 47.826 0.00 0.00 0.00 3.67
15 16 3.452990 TGCCCCTCAATACTAAATCGACA 59.547 43.478 0.00 0.00 0.00 4.35
16 17 4.058817 CTGCCCCTCAATACTAAATCGAC 58.941 47.826 0.00 0.00 0.00 4.20
17 18 3.494398 GCTGCCCCTCAATACTAAATCGA 60.494 47.826 0.00 0.00 0.00 3.59
18 19 2.808543 GCTGCCCCTCAATACTAAATCG 59.191 50.000 0.00 0.00 0.00 3.34
19 20 3.149981 GGCTGCCCCTCAATACTAAATC 58.850 50.000 7.66 0.00 0.00 2.17
20 21 2.513738 TGGCTGCCCCTCAATACTAAAT 59.486 45.455 17.53 0.00 0.00 1.40
21 22 1.919654 TGGCTGCCCCTCAATACTAAA 59.080 47.619 17.53 0.00 0.00 1.85
22 23 1.590591 TGGCTGCCCCTCAATACTAA 58.409 50.000 17.53 0.00 0.00 2.24
23 24 1.819753 ATGGCTGCCCCTCAATACTA 58.180 50.000 17.53 0.00 0.00 1.82
24 25 0.929244 AATGGCTGCCCCTCAATACT 59.071 50.000 17.53 0.00 0.00 2.12
25 26 1.683385 GAAATGGCTGCCCCTCAATAC 59.317 52.381 17.53 0.00 0.00 1.89
26 27 1.287442 TGAAATGGCTGCCCCTCAATA 59.713 47.619 17.53 0.00 0.00 1.90
27 28 0.041535 TGAAATGGCTGCCCCTCAAT 59.958 50.000 17.53 0.00 0.00 2.57
28 29 0.041535 ATGAAATGGCTGCCCCTCAA 59.958 50.000 17.53 0.00 0.00 3.02
29 30 0.041535 AATGAAATGGCTGCCCCTCA 59.958 50.000 17.53 15.65 0.00 3.86
30 31 1.197812 AAATGAAATGGCTGCCCCTC 58.802 50.000 17.53 10.30 0.00 4.30
31 32 1.660242 AAAATGAAATGGCTGCCCCT 58.340 45.000 17.53 0.00 0.00 4.79
32 33 2.495155 AAAAATGAAATGGCTGCCCC 57.505 45.000 17.53 3.41 0.00 5.80
140 141 5.555256 CGCAGCTTTGTAACGAATATCAGAG 60.555 44.000 0.00 0.00 0.00 3.35
146 147 2.004017 CCCGCAGCTTTGTAACGAATA 58.996 47.619 0.00 0.00 0.00 1.75
162 163 2.252747 GCGTTTTTACATAAACCCCGC 58.747 47.619 0.00 0.00 35.15 6.13
164 165 3.005578 TGTGGCGTTTTTACATAAACCCC 59.994 43.478 0.00 0.00 36.78 4.95
174 175 1.134560 GGTTGGTGTGTGGCGTTTTTA 59.865 47.619 0.00 0.00 0.00 1.52
188 190 2.111043 CCAGTGTCAGCGGTTGGT 59.889 61.111 0.00 0.00 0.00 3.67
209 211 4.096382 GGTGCAAATTACGTCCTGATTCAT 59.904 41.667 0.00 0.00 0.00 2.57
210 212 3.438781 GGTGCAAATTACGTCCTGATTCA 59.561 43.478 0.00 0.00 0.00 2.57
211 213 3.485216 CGGTGCAAATTACGTCCTGATTC 60.485 47.826 0.00 0.00 0.00 2.52
212 214 2.418628 CGGTGCAAATTACGTCCTGATT 59.581 45.455 0.00 0.00 0.00 2.57
213 215 2.006888 CGGTGCAAATTACGTCCTGAT 58.993 47.619 0.00 0.00 0.00 2.90
214 216 1.270412 ACGGTGCAAATTACGTCCTGA 60.270 47.619 0.00 0.00 33.92 3.86
215 217 1.153353 ACGGTGCAAATTACGTCCTG 58.847 50.000 0.00 0.00 33.92 3.86
216 218 2.747396 TACGGTGCAAATTACGTCCT 57.253 45.000 0.00 0.00 40.38 3.85
217 219 2.674357 ACATACGGTGCAAATTACGTCC 59.326 45.455 0.00 0.00 40.38 4.79
265 281 9.160496 AGTTTGATGTTGCAAAATACAGAAAAA 57.840 25.926 0.95 0.00 39.26 1.94
271 287 5.354767 TGCAGTTTGATGTTGCAAAATACA 58.645 33.333 0.95 0.00 44.13 2.29
272 288 5.903764 TGCAGTTTGATGTTGCAAAATAC 57.096 34.783 0.95 0.00 44.13 1.89
312 334 5.897377 AAAGGTAAATGCACTGATGGTAC 57.103 39.130 0.00 0.00 0.00 3.34
346 368 2.050477 ATTTCGAAACAGGCTTTGCG 57.950 45.000 13.81 4.14 0.00 4.85
363 388 6.625740 CGGTCATCAGGCTTACAAAATCAATT 60.626 38.462 0.00 0.00 0.00 2.32
452 477 5.828299 TCTTTGCCGGTGATATTTTAAGG 57.172 39.130 1.90 0.00 0.00 2.69
467 497 7.602753 AGGTGTTGTAGATATTTTTCTTTGCC 58.397 34.615 0.00 0.00 0.00 4.52
527 563 4.441079 CCATACGAGGACGAGGTTGTAAAT 60.441 45.833 0.00 0.00 42.66 1.40
570 606 9.970395 TCAAATTATTCTCAATCATGGCATAAC 57.030 29.630 0.00 0.00 0.00 1.89
600 636 1.937223 TCGTGTGTGAAGCAATTTCGT 59.063 42.857 0.00 0.00 38.71 3.85
601 637 2.661504 TCGTGTGTGAAGCAATTTCG 57.338 45.000 0.00 0.00 38.71 3.46
602 638 4.846137 GTGTATCGTGTGTGAAGCAATTTC 59.154 41.667 0.00 0.00 36.29 2.17
603 639 4.274705 TGTGTATCGTGTGTGAAGCAATTT 59.725 37.500 0.00 0.00 0.00 1.82
604 640 3.812609 TGTGTATCGTGTGTGAAGCAATT 59.187 39.130 0.00 0.00 0.00 2.32
605 641 3.398406 TGTGTATCGTGTGTGAAGCAAT 58.602 40.909 0.00 0.00 0.00 3.56
606 642 2.827652 TGTGTATCGTGTGTGAAGCAA 58.172 42.857 0.00 0.00 0.00 3.91
607 643 2.517650 TGTGTATCGTGTGTGAAGCA 57.482 45.000 0.00 0.00 0.00 3.91
608 644 2.993220 TCATGTGTATCGTGTGTGAAGC 59.007 45.455 0.00 0.00 34.87 3.86
609 645 4.432892 CGTTCATGTGTATCGTGTGTGAAG 60.433 45.833 0.00 0.00 34.87 3.02
610 646 3.427193 CGTTCATGTGTATCGTGTGTGAA 59.573 43.478 0.00 0.00 34.87 3.18
611 647 2.983803 CGTTCATGTGTATCGTGTGTGA 59.016 45.455 0.00 0.00 34.87 3.58
612 648 2.983803 TCGTTCATGTGTATCGTGTGTG 59.016 45.455 0.00 0.00 34.87 3.82
613 649 3.291809 TCGTTCATGTGTATCGTGTGT 57.708 42.857 0.00 0.00 34.87 3.72
614 650 4.027377 CAGATCGTTCATGTGTATCGTGTG 60.027 45.833 0.00 0.00 34.87 3.82
615 651 4.105486 CAGATCGTTCATGTGTATCGTGT 58.895 43.478 0.00 0.00 34.87 4.49
616 652 3.060940 GCAGATCGTTCATGTGTATCGTG 60.061 47.826 0.00 0.00 34.61 4.35
617 653 3.116300 GCAGATCGTTCATGTGTATCGT 58.884 45.455 0.00 0.00 0.00 3.73
618 654 2.151924 CGCAGATCGTTCATGTGTATCG 59.848 50.000 0.00 0.00 0.00 2.92
619 655 3.372060 TCGCAGATCGTTCATGTGTATC 58.628 45.455 0.00 0.00 39.67 2.24
620 656 3.436700 TCGCAGATCGTTCATGTGTAT 57.563 42.857 0.00 0.00 39.67 2.29
621 657 2.921121 GTTCGCAGATCGTTCATGTGTA 59.079 45.455 0.00 0.00 39.67 2.90
622 658 1.726791 GTTCGCAGATCGTTCATGTGT 59.273 47.619 0.00 0.00 39.67 3.72
623 659 1.266550 CGTTCGCAGATCGTTCATGTG 60.267 52.381 0.00 0.00 43.77 3.21
624 660 0.992072 CGTTCGCAGATCGTTCATGT 59.008 50.000 0.00 0.00 43.77 3.21
625 661 3.767900 CGTTCGCAGATCGTTCATG 57.232 52.632 0.00 0.00 43.77 3.07
632 668 0.579156 GAAGGCATCGTTCGCAGATC 59.421 55.000 0.00 0.00 35.04 2.75
633 669 0.176680 AGAAGGCATCGTTCGCAGAT 59.823 50.000 0.00 0.00 35.04 2.90
634 670 0.458543 GAGAAGGCATCGTTCGCAGA 60.459 55.000 0.00 0.00 34.07 4.26
635 671 0.459237 AGAGAAGGCATCGTTCGCAG 60.459 55.000 5.97 0.00 34.07 5.18
636 672 0.815095 TAGAGAAGGCATCGTTCGCA 59.185 50.000 5.97 0.00 34.07 5.10
637 673 1.201343 GTAGAGAAGGCATCGTTCGC 58.799 55.000 0.00 0.00 34.07 4.70
638 674 1.063616 TCGTAGAGAAGGCATCGTTCG 59.936 52.381 0.00 0.00 34.07 3.95
639 675 2.846039 TCGTAGAGAAGGCATCGTTC 57.154 50.000 0.00 0.00 0.00 3.95
640 676 3.130516 TGATTCGTAGAGAAGGCATCGTT 59.869 43.478 0.00 0.00 42.92 3.85
641 677 2.688446 TGATTCGTAGAGAAGGCATCGT 59.312 45.455 0.00 0.00 42.92 3.73
642 678 3.304257 CTGATTCGTAGAGAAGGCATCG 58.696 50.000 0.00 0.00 42.92 3.84
643 679 3.056304 GCTGATTCGTAGAGAAGGCATC 58.944 50.000 0.00 0.00 42.92 3.91
644 680 2.697751 AGCTGATTCGTAGAGAAGGCAT 59.302 45.455 0.00 0.00 42.92 4.40
645 681 2.103373 AGCTGATTCGTAGAGAAGGCA 58.897 47.619 0.00 0.00 42.92 4.75
646 682 2.880963 AGCTGATTCGTAGAGAAGGC 57.119 50.000 0.00 0.00 42.92 4.35
668 704 3.133901 AGGAGGCGATTGGTTTTGTTTTT 59.866 39.130 0.00 0.00 0.00 1.94
669 705 2.698274 AGGAGGCGATTGGTTTTGTTTT 59.302 40.909 0.00 0.00 0.00 2.43
670 706 2.035832 CAGGAGGCGATTGGTTTTGTTT 59.964 45.455 0.00 0.00 0.00 2.83
671 707 1.613437 CAGGAGGCGATTGGTTTTGTT 59.387 47.619 0.00 0.00 0.00 2.83
672 708 1.247567 CAGGAGGCGATTGGTTTTGT 58.752 50.000 0.00 0.00 0.00 2.83
673 709 0.109132 GCAGGAGGCGATTGGTTTTG 60.109 55.000 0.00 0.00 0.00 2.44
674 710 2.267045 GCAGGAGGCGATTGGTTTT 58.733 52.632 0.00 0.00 0.00 2.43
675 711 4.002797 GCAGGAGGCGATTGGTTT 57.997 55.556 0.00 0.00 0.00 3.27
684 720 4.373116 TCCGTGAACGCAGGAGGC 62.373 66.667 0.00 0.00 38.18 4.70
685 721 2.432628 GTCCGTGAACGCAGGAGG 60.433 66.667 0.00 0.00 38.18 4.30
686 722 2.805353 CGTCCGTGAACGCAGGAG 60.805 66.667 0.00 0.00 35.64 3.69
692 728 4.054455 CAACCGCGTCCGTGAACG 62.054 66.667 4.92 0.00 45.31 3.95
693 729 3.708734 CCAACCGCGTCCGTGAAC 61.709 66.667 4.92 0.00 0.00 3.18
694 730 3.851845 CTCCAACCGCGTCCGTGAA 62.852 63.158 4.92 0.00 0.00 3.18
695 731 4.351938 CTCCAACCGCGTCCGTGA 62.352 66.667 4.92 0.00 0.00 4.35
708 744 2.274948 GATCCCATGTGGCAGCTCCA 62.275 60.000 0.00 1.25 44.18 3.86
709 745 1.527844 GATCCCATGTGGCAGCTCC 60.528 63.158 0.00 0.00 0.00 4.70
710 746 1.890979 CGATCCCATGTGGCAGCTC 60.891 63.158 0.00 0.00 0.00 4.09
711 747 2.191375 CGATCCCATGTGGCAGCT 59.809 61.111 0.00 0.00 0.00 4.24
712 748 2.124570 ACGATCCCATGTGGCAGC 60.125 61.111 0.00 0.00 0.00 5.25
713 749 1.524621 GGACGATCCCATGTGGCAG 60.525 63.158 0.00 0.00 0.00 4.85
714 750 1.634865 ATGGACGATCCCATGTGGCA 61.635 55.000 2.95 0.00 44.77 4.92
715 751 1.149174 ATGGACGATCCCATGTGGC 59.851 57.895 2.95 0.00 44.77 5.01
721 757 1.391933 CCGACTCATGGACGATCCCA 61.392 60.000 7.40 0.00 41.05 4.37
722 758 1.364171 CCGACTCATGGACGATCCC 59.636 63.158 7.40 0.00 35.03 3.85
723 759 1.300233 GCCGACTCATGGACGATCC 60.300 63.158 7.40 0.00 36.96 3.36
724 760 0.596083 CAGCCGACTCATGGACGATC 60.596 60.000 7.40 0.00 0.00 3.69
725 761 1.439228 CAGCCGACTCATGGACGAT 59.561 57.895 7.40 0.00 0.00 3.73
726 762 2.885113 CAGCCGACTCATGGACGA 59.115 61.111 7.40 0.00 0.00 4.20
727 763 2.887568 GCAGCCGACTCATGGACG 60.888 66.667 0.00 0.00 0.00 4.79
728 764 1.812922 CAGCAGCCGACTCATGGAC 60.813 63.158 0.00 0.00 0.00 4.02
729 765 2.580815 CAGCAGCCGACTCATGGA 59.419 61.111 0.00 0.00 0.00 3.41
730 766 2.513204 CCAGCAGCCGACTCATGG 60.513 66.667 0.00 0.00 0.00 3.66
731 767 2.513204 CCCAGCAGCCGACTCATG 60.513 66.667 0.00 0.00 0.00 3.07
732 768 2.596851 AACCCAGCAGCCGACTCAT 61.597 57.895 0.00 0.00 0.00 2.90
733 769 3.241530 AACCCAGCAGCCGACTCA 61.242 61.111 0.00 0.00 0.00 3.41
734 770 2.743928 CAACCCAGCAGCCGACTC 60.744 66.667 0.00 0.00 0.00 3.36
735 771 3.537206 GACAACCCAGCAGCCGACT 62.537 63.158 0.00 0.00 0.00 4.18
736 772 3.050275 GACAACCCAGCAGCCGAC 61.050 66.667 0.00 0.00 0.00 4.79
737 773 4.680237 CGACAACCCAGCAGCCGA 62.680 66.667 0.00 0.00 0.00 5.54
738 774 4.988598 ACGACAACCCAGCAGCCG 62.989 66.667 0.00 0.00 0.00 5.52
739 775 3.357079 CACGACAACCCAGCAGCC 61.357 66.667 0.00 0.00 0.00 4.85
740 776 2.591715 ACACGACAACCCAGCAGC 60.592 61.111 0.00 0.00 0.00 5.25
741 777 0.249699 TACACACGACAACCCAGCAG 60.250 55.000 0.00 0.00 0.00 4.24
742 778 0.394938 ATACACACGACAACCCAGCA 59.605 50.000 0.00 0.00 0.00 4.41
743 779 2.268298 CTATACACACGACAACCCAGC 58.732 52.381 0.00 0.00 0.00 4.85
744 780 2.268298 GCTATACACACGACAACCCAG 58.732 52.381 0.00 0.00 0.00 4.45
745 781 1.619332 TGCTATACACACGACAACCCA 59.381 47.619 0.00 0.00 0.00 4.51
746 782 2.268298 CTGCTATACACACGACAACCC 58.732 52.381 0.00 0.00 0.00 4.11
747 783 1.659098 GCTGCTATACACACGACAACC 59.341 52.381 0.00 0.00 0.00 3.77
748 784 1.320555 CGCTGCTATACACACGACAAC 59.679 52.381 0.00 0.00 0.00 3.32
749 785 1.624487 CGCTGCTATACACACGACAA 58.376 50.000 0.00 0.00 0.00 3.18
750 786 0.800683 GCGCTGCTATACACACGACA 60.801 55.000 0.00 0.00 0.00 4.35
751 787 1.480219 GGCGCTGCTATACACACGAC 61.480 60.000 7.64 0.00 0.00 4.34
752 788 1.226859 GGCGCTGCTATACACACGA 60.227 57.895 7.64 0.00 0.00 4.35
753 789 2.576893 CGGCGCTGCTATACACACG 61.577 63.158 7.64 0.00 0.00 4.49
754 790 1.082117 AACGGCGCTGCTATACACAC 61.082 55.000 18.15 0.00 0.00 3.82
755 791 0.390603 AAACGGCGCTGCTATACACA 60.391 50.000 18.15 0.00 0.00 3.72
756 792 0.026285 CAAACGGCGCTGCTATACAC 59.974 55.000 18.15 0.00 0.00 2.90
757 793 0.108567 TCAAACGGCGCTGCTATACA 60.109 50.000 18.15 0.00 0.00 2.29
758 794 1.003851 TTCAAACGGCGCTGCTATAC 58.996 50.000 18.15 0.00 0.00 1.47
759 795 1.728068 TTTCAAACGGCGCTGCTATA 58.272 45.000 18.15 0.00 0.00 1.31
760 796 0.878416 TTTTCAAACGGCGCTGCTAT 59.122 45.000 18.15 0.00 0.00 2.97
761 797 0.663688 TTTTTCAAACGGCGCTGCTA 59.336 45.000 18.15 0.00 0.00 3.49
762 798 0.031994 ATTTTTCAAACGGCGCTGCT 59.968 45.000 18.15 0.00 0.00 4.24
763 799 0.161446 CATTTTTCAAACGGCGCTGC 59.839 50.000 18.15 0.00 0.00 5.25
764 800 1.451651 GTCATTTTTCAAACGGCGCTG 59.548 47.619 16.39 16.39 0.00 5.18
765 801 1.066303 TGTCATTTTTCAAACGGCGCT 59.934 42.857 6.90 0.00 0.00 5.92
766 802 1.482278 TGTCATTTTTCAAACGGCGC 58.518 45.000 6.90 0.00 0.00 6.53
767 803 2.097444 GCTTGTCATTTTTCAAACGGCG 60.097 45.455 4.80 4.80 0.00 6.46
768 804 2.863137 TGCTTGTCATTTTTCAAACGGC 59.137 40.909 0.00 0.00 0.00 5.68
769 805 6.148948 TCTATGCTTGTCATTTTTCAAACGG 58.851 36.000 0.00 0.00 36.63 4.44
770 806 6.306356 CCTCTATGCTTGTCATTTTTCAAACG 59.694 38.462 0.00 0.00 36.63 3.60
771 807 6.089954 GCCTCTATGCTTGTCATTTTTCAAAC 59.910 38.462 0.00 0.00 36.63 2.93
772 808 6.158598 GCCTCTATGCTTGTCATTTTTCAAA 58.841 36.000 0.00 0.00 36.63 2.69
773 809 5.336690 GGCCTCTATGCTTGTCATTTTTCAA 60.337 40.000 0.00 0.00 36.63 2.69
774 810 4.158394 GGCCTCTATGCTTGTCATTTTTCA 59.842 41.667 0.00 0.00 36.63 2.69
775 811 4.158394 TGGCCTCTATGCTTGTCATTTTTC 59.842 41.667 3.32 0.00 36.63 2.29
776 812 4.088634 TGGCCTCTATGCTTGTCATTTTT 58.911 39.130 3.32 0.00 36.63 1.94
777 813 3.700538 TGGCCTCTATGCTTGTCATTTT 58.299 40.909 3.32 0.00 36.63 1.82
778 814 3.370840 TGGCCTCTATGCTTGTCATTT 57.629 42.857 3.32 0.00 36.63 2.32
779 815 3.370840 TTGGCCTCTATGCTTGTCATT 57.629 42.857 3.32 0.00 36.63 2.57
780 816 3.370840 TTTGGCCTCTATGCTTGTCAT 57.629 42.857 3.32 0.00 39.17 3.06
781 817 2.877097 TTTGGCCTCTATGCTTGTCA 57.123 45.000 3.32 0.00 0.00 3.58
787 823 3.511540 AGGAAAGTTTTTGGCCTCTATGC 59.488 43.478 3.32 0.00 0.00 3.14
798 834 3.768468 TTTCGTGCGAGGAAAGTTTTT 57.232 38.095 0.00 0.00 29.79 1.94
945 984 0.178990 GCGGGGAAGGCTGGAATATT 60.179 55.000 0.00 0.00 0.00 1.28
986 1025 2.042762 CCATGGGGAGAGGGTGGA 59.957 66.667 2.85 0.00 35.59 4.02
987 1026 3.813724 GCCATGGGGAGAGGGTGG 61.814 72.222 15.13 0.00 35.59 4.61
988 1027 3.813724 GGCCATGGGGAGAGGGTG 61.814 72.222 15.13 0.00 35.59 4.61
1131 1179 7.147976 GGTAGTTCTTGACATTGAAGCATTTT 58.852 34.615 0.00 0.00 0.00 1.82
1142 1190 0.252197 GCCGGGGTAGTTCTTGACAT 59.748 55.000 2.18 0.00 0.00 3.06
1143 1215 1.675219 GCCGGGGTAGTTCTTGACA 59.325 57.895 2.18 0.00 0.00 3.58
1364 1455 1.649271 GGACCTTCCCCATGCAGGAT 61.649 60.000 0.00 0.00 41.22 3.24
1426 1554 1.147153 CCGCCCTTCATCTTCTCCC 59.853 63.158 0.00 0.00 0.00 4.30
1477 1605 3.423162 CTCTTCCTCGAGCGGCTGG 62.423 68.421 7.50 6.41 0.00 4.85
1730 1864 5.821516 ACAAGTCCTCGAGTAGTATTCAG 57.178 43.478 12.31 0.00 0.00 3.02
1745 1879 5.163602 CCAGACTGTCATCTACTACAAGTCC 60.164 48.000 10.88 0.00 30.62 3.85
1771 1905 0.030638 CAACCAACAGAAAGCCACGG 59.969 55.000 0.00 0.00 0.00 4.94
1841 1977 4.227864 ACCTCAAACTCAATCCTCATCC 57.772 45.455 0.00 0.00 0.00 3.51
1864 2000 3.263425 CAGTCATGGTGTAGTTAACCCCT 59.737 47.826 0.88 0.00 36.83 4.79
1865 2001 3.008704 ACAGTCATGGTGTAGTTAACCCC 59.991 47.826 0.88 0.00 36.83 4.95
1866 2002 4.251268 GACAGTCATGGTGTAGTTAACCC 58.749 47.826 0.88 0.00 36.83 4.11
1867 2003 4.890088 TGACAGTCATGGTGTAGTTAACC 58.110 43.478 0.00 0.00 38.26 2.85
1868 2004 9.245962 GTATATGACAGTCATGGTGTAGTTAAC 57.754 37.037 24.15 0.00 37.70 2.01
1869 2005 9.197306 AGTATATGACAGTCATGGTGTAGTTAA 57.803 33.333 24.15 2.29 37.70 2.01
1870 2006 8.762481 AGTATATGACAGTCATGGTGTAGTTA 57.238 34.615 24.15 3.01 37.70 2.24
1871 2007 7.661536 AGTATATGACAGTCATGGTGTAGTT 57.338 36.000 24.15 0.00 37.70 2.24
1872 2008 8.941995 ATAGTATATGACAGTCATGGTGTAGT 57.058 34.615 24.15 15.56 37.70 2.73
1873 2009 9.237187 AGATAGTATATGACAGTCATGGTGTAG 57.763 37.037 24.15 0.00 37.70 2.74
1874 2010 9.588096 AAGATAGTATATGACAGTCATGGTGTA 57.412 33.333 24.15 11.75 37.70 2.90
1875 2011 8.484214 AAGATAGTATATGACAGTCATGGTGT 57.516 34.615 24.15 10.92 37.70 4.16
1893 2029 8.265764 GGACCAGTAAACCAAGATAAAGATAGT 58.734 37.037 0.00 0.00 0.00 2.12
1894 2030 7.715686 GGGACCAGTAAACCAAGATAAAGATAG 59.284 40.741 0.00 0.00 0.00 2.08
1895 2031 7.571025 GGGACCAGTAAACCAAGATAAAGATA 58.429 38.462 0.00 0.00 0.00 1.98
1896 2032 6.424032 GGGACCAGTAAACCAAGATAAAGAT 58.576 40.000 0.00 0.00 0.00 2.40
1897 2033 5.812286 GGGACCAGTAAACCAAGATAAAGA 58.188 41.667 0.00 0.00 0.00 2.52
1916 2052 2.344025 GACACTGATTACAACGGGGAC 58.656 52.381 0.00 0.00 0.00 4.46
1917 2053 1.067425 CGACACTGATTACAACGGGGA 60.067 52.381 0.00 0.00 0.00 4.81
1918 2054 1.067425 TCGACACTGATTACAACGGGG 60.067 52.381 0.00 0.00 0.00 5.73
1919 2055 2.357327 TCGACACTGATTACAACGGG 57.643 50.000 0.00 0.00 0.00 5.28
1920 2056 4.921470 AATTCGACACTGATTACAACGG 57.079 40.909 0.00 0.00 0.00 4.44
1921 2057 8.874745 ATTAAAATTCGACACTGATTACAACG 57.125 30.769 0.00 0.00 0.00 4.10
1922 2058 9.820229 TGATTAAAATTCGACACTGATTACAAC 57.180 29.630 0.00 0.00 0.00 3.32
1950 2086 9.270640 TGCATGAACATTTTGCTAGTTAAATTT 57.729 25.926 0.00 0.00 37.28 1.82
1951 2087 8.830201 TGCATGAACATTTTGCTAGTTAAATT 57.170 26.923 0.00 0.00 37.28 1.82
1952 2088 8.875803 CATGCATGAACATTTTGCTAGTTAAAT 58.124 29.630 22.59 0.00 37.28 1.40
1953 2089 7.871973 ACATGCATGAACATTTTGCTAGTTAAA 59.128 29.630 32.75 0.00 37.28 1.52
1954 2090 7.377398 ACATGCATGAACATTTTGCTAGTTAA 58.623 30.769 32.75 0.00 37.28 2.01
1955 2091 6.923012 ACATGCATGAACATTTTGCTAGTTA 58.077 32.000 32.75 0.00 37.28 2.24
1956 2092 5.786311 ACATGCATGAACATTTTGCTAGTT 58.214 33.333 32.75 1.36 37.28 2.24
1957 2093 5.395682 ACATGCATGAACATTTTGCTAGT 57.604 34.783 32.75 2.07 37.28 2.57
1958 2094 7.997107 ATAACATGCATGAACATTTTGCTAG 57.003 32.000 32.75 1.29 37.28 3.42
1959 2095 9.866798 TTTATAACATGCATGAACATTTTGCTA 57.133 25.926 32.75 8.99 37.28 3.49
1960 2096 8.774890 TTTATAACATGCATGAACATTTTGCT 57.225 26.923 32.75 9.86 37.28 3.91
1961 2097 9.823098 TTTTTATAACATGCATGAACATTTTGC 57.177 25.926 32.75 0.00 36.91 3.68
2008 2144 4.673534 ATCGTTGGGTTCGTATTTGAAC 57.326 40.909 0.00 0.00 45.91 3.18
2009 2145 8.665643 ATTATATCGTTGGGTTCGTATTTGAA 57.334 30.769 0.00 0.00 0.00 2.69
2010 2146 8.665643 AATTATATCGTTGGGTTCGTATTTGA 57.334 30.769 0.00 0.00 0.00 2.69
2011 2147 9.724839 AAAATTATATCGTTGGGTTCGTATTTG 57.275 29.630 0.00 0.00 0.00 2.32
2013 2149 9.724839 CAAAAATTATATCGTTGGGTTCGTATT 57.275 29.630 0.00 0.00 0.00 1.89
2014 2150 8.895737 ACAAAAATTATATCGTTGGGTTCGTAT 58.104 29.630 0.00 0.00 0.00 3.06
2015 2151 8.266392 ACAAAAATTATATCGTTGGGTTCGTA 57.734 30.769 0.00 0.00 0.00 3.43
2016 2152 7.148355 ACAAAAATTATATCGTTGGGTTCGT 57.852 32.000 0.00 0.00 0.00 3.85
2017 2153 9.557338 TTTACAAAAATTATATCGTTGGGTTCG 57.443 29.630 0.00 0.00 0.00 3.95
2035 2171 9.877178 ACAAAATGTTAGTGGATGTTTACAAAA 57.123 25.926 0.00 0.00 0.00 2.44
2036 2172 9.522804 GACAAAATGTTAGTGGATGTTTACAAA 57.477 29.630 0.00 0.00 0.00 2.83
2037 2173 8.687242 TGACAAAATGTTAGTGGATGTTTACAA 58.313 29.630 0.00 0.00 0.00 2.41
2038 2174 8.226819 TGACAAAATGTTAGTGGATGTTTACA 57.773 30.769 0.00 0.00 0.00 2.41
2039 2175 8.349983 ACTGACAAAATGTTAGTGGATGTTTAC 58.650 33.333 7.07 0.00 44.14 2.01
2040 2176 8.458573 ACTGACAAAATGTTAGTGGATGTTTA 57.541 30.769 7.07 0.00 44.14 2.01
2041 2177 7.346751 ACTGACAAAATGTTAGTGGATGTTT 57.653 32.000 7.07 0.00 44.14 2.83
2042 2178 6.959639 ACTGACAAAATGTTAGTGGATGTT 57.040 33.333 7.07 0.00 44.14 2.71
2043 2179 6.959639 AACTGACAAAATGTTAGTGGATGT 57.040 33.333 8.44 0.00 44.91 3.06
2044 2180 9.912634 ATTTAACTGACAAAATGTTAGTGGATG 57.087 29.630 8.44 0.00 44.91 3.51
2046 2182 9.349713 AGATTTAACTGACAAAATGTTAGTGGA 57.650 29.630 8.44 0.00 44.91 4.02
2047 2183 9.965824 AAGATTTAACTGACAAAATGTTAGTGG 57.034 29.630 8.44 0.00 44.91 4.00
2078 2214 9.495572 CCCCTTTGTAATTTGTGCTAAATTTTA 57.504 29.630 14.43 5.22 32.64 1.52
2079 2215 7.040755 GCCCCTTTGTAATTTGTGCTAAATTTT 60.041 33.333 14.43 0.00 32.64 1.82
2080 2216 6.429692 GCCCCTTTGTAATTTGTGCTAAATTT 59.570 34.615 14.43 0.00 32.64 1.82
2081 2217 5.937540 GCCCCTTTGTAATTTGTGCTAAATT 59.062 36.000 13.92 13.92 34.55 1.82
2082 2218 5.487433 GCCCCTTTGTAATTTGTGCTAAAT 58.513 37.500 0.00 0.00 0.00 1.40
2083 2219 4.262678 GGCCCCTTTGTAATTTGTGCTAAA 60.263 41.667 0.00 0.00 0.00 1.85
2084 2220 3.259625 GGCCCCTTTGTAATTTGTGCTAA 59.740 43.478 0.00 0.00 0.00 3.09
2085 2221 2.829120 GGCCCCTTTGTAATTTGTGCTA 59.171 45.455 0.00 0.00 0.00 3.49
2086 2222 1.623311 GGCCCCTTTGTAATTTGTGCT 59.377 47.619 0.00 0.00 0.00 4.40
2087 2223 1.346068 TGGCCCCTTTGTAATTTGTGC 59.654 47.619 0.00 0.00 0.00 4.57
2088 2224 3.760580 TTGGCCCCTTTGTAATTTGTG 57.239 42.857 0.00 0.00 0.00 3.33
2089 2225 6.234920 GTTTATTGGCCCCTTTGTAATTTGT 58.765 36.000 0.00 0.00 0.00 2.83
2090 2226 5.645929 GGTTTATTGGCCCCTTTGTAATTTG 59.354 40.000 0.00 0.00 0.00 2.32
2091 2227 5.310857 TGGTTTATTGGCCCCTTTGTAATTT 59.689 36.000 0.00 0.00 0.00 1.82
2092 2228 4.846940 TGGTTTATTGGCCCCTTTGTAATT 59.153 37.500 0.00 0.00 0.00 1.40
2093 2229 4.430441 TGGTTTATTGGCCCCTTTGTAAT 58.570 39.130 0.00 0.00 0.00 1.89
2094 2230 3.835395 CTGGTTTATTGGCCCCTTTGTAA 59.165 43.478 0.00 0.00 0.00 2.41
2095 2231 3.436243 CTGGTTTATTGGCCCCTTTGTA 58.564 45.455 0.00 0.00 0.00 2.41
2096 2232 2.256306 CTGGTTTATTGGCCCCTTTGT 58.744 47.619 0.00 0.00 0.00 2.83
2097 2233 1.554617 CCTGGTTTATTGGCCCCTTTG 59.445 52.381 0.00 0.00 0.00 2.77
2098 2234 1.435168 TCCTGGTTTATTGGCCCCTTT 59.565 47.619 0.00 0.00 0.00 3.11
2099 2235 1.089123 TCCTGGTTTATTGGCCCCTT 58.911 50.000 0.00 0.00 0.00 3.95
2100 2236 0.335019 GTCCTGGTTTATTGGCCCCT 59.665 55.000 0.00 0.00 0.00 4.79
2101 2237 1.035385 CGTCCTGGTTTATTGGCCCC 61.035 60.000 0.00 0.00 0.00 5.80
2102 2238 1.035385 CCGTCCTGGTTTATTGGCCC 61.035 60.000 0.00 0.00 0.00 5.80
2103 2239 0.034863 TCCGTCCTGGTTTATTGGCC 60.035 55.000 0.00 0.00 39.52 5.36
2104 2240 1.379527 CTCCGTCCTGGTTTATTGGC 58.620 55.000 0.00 0.00 39.52 4.52
2105 2241 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
2106 2242 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
2107 2243 4.296056 AGATACCTCCGTCCTGGTTTATT 58.704 43.478 0.00 0.00 39.52 1.40
2108 2244 3.896272 GAGATACCTCCGTCCTGGTTTAT 59.104 47.826 0.00 0.00 39.52 1.40
2109 2245 3.053095 AGAGATACCTCCGTCCTGGTTTA 60.053 47.826 0.00 0.00 40.30 2.01
2110 2246 2.108970 GAGATACCTCCGTCCTGGTTT 58.891 52.381 0.00 0.00 39.52 3.27
2111 2247 1.288335 AGAGATACCTCCGTCCTGGTT 59.712 52.381 0.00 0.00 40.30 3.67
2112 2248 0.927767 AGAGATACCTCCGTCCTGGT 59.072 55.000 0.00 0.00 40.30 4.00
2113 2249 2.106857 AGTAGAGATACCTCCGTCCTGG 59.893 54.545 0.00 0.00 40.30 4.45
2114 2250 3.404899 GAGTAGAGATACCTCCGTCCTG 58.595 54.545 0.00 0.00 40.30 3.86
2115 2251 2.372837 GGAGTAGAGATACCTCCGTCCT 59.627 54.545 0.00 0.00 40.30 3.85
2116 2252 2.372837 AGGAGTAGAGATACCTCCGTCC 59.627 54.545 0.00 0.00 40.30 4.79
2117 2253 3.775261 AGGAGTAGAGATACCTCCGTC 57.225 52.381 0.00 0.00 40.30 4.79
2118 2254 5.515184 CCATTAGGAGTAGAGATACCTCCGT 60.515 48.000 0.00 0.00 37.31 4.69
2119 2255 4.944930 CCATTAGGAGTAGAGATACCTCCG 59.055 50.000 0.00 0.00 37.31 4.63
2120 2256 6.142259 TCCATTAGGAGTAGAGATACCTCC 57.858 45.833 0.00 0.00 39.61 4.30
2190 2328 0.686112 GAGGTGGTGGGAGGAGAGAG 60.686 65.000 0.00 0.00 0.00 3.20
2269 2407 7.709947 AGATCCGTGATTTGTTATACGTTAGA 58.290 34.615 0.00 0.00 34.96 2.10
2504 2651 6.866770 TGACGTGTCTGATTAGGAAAGTTTAG 59.133 38.462 0.00 0.00 0.00 1.85
2505 2652 6.643770 GTGACGTGTCTGATTAGGAAAGTTTA 59.356 38.462 0.00 0.00 0.00 2.01
2647 2796 9.581289 TTTTCTTCAATAGGTGGAAAACATAGA 57.419 29.630 0.00 0.00 33.04 1.98
2670 2821 5.324832 AATATCGATGGAGGGGTGATTTT 57.675 39.130 8.54 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.