AutoCloner

Multiple sequence alignment - TraesCS5B01G126900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G126900	chr5B	100.000	2623	0	0	1	2623	231824031	231826653	0.000000e+00	4844.0
1	TraesCS5B01G126900	chr5B	89.964	548	50	5	2	546	207069785	207069240	0.000000e+00	702.0
2	TraesCS5B01G126900	chr5B	89.762	547	45	7	1	544	510336802	510336264	0.000000e+00	689.0
3	TraesCS5B01G126900	chr5A	93.587	998	47	5	656	1644	284885686	284886675	0.000000e+00	1472.0
4	TraesCS5B01G126900	chr5A	94.395	339	19	0	1571	1909	284886673	284887011	2.990000e-144	521.0
5	TraesCS5B01G126900	chr5A	94.574	129	7	0	545	673	284885541	284885669	1.590000e-47	200.0
6	TraesCS5B01G126900	chr5D	92.780	928	41	6	799	1710	216059712	216060629	0.000000e+00	1319.0
7	TraesCS5B01G126900	chr5D	89.655	725	60	10	1911	2623	545621732	545622453	0.000000e+00	909.0
8	TraesCS5B01G126900	chr5D	94.231	260	10	3	545	799	216057793	216058052	2.450000e-105	392.0
9	TraesCS5B01G126900	chr3D	89.931	725	58	8	1911	2623	460947166	460946445	0.000000e+00	920.0
10	TraesCS5B01G126900	chr3D	89.503	724	63	7	1911	2623	180458914	180458193	0.000000e+00	904.0
11	TraesCS5B01G126900	chr2D	89.917	724	57	9	1911	2623	25212655	25213373	0.000000e+00	918.0
12	TraesCS5B01G126900	chr4A	89.793	725	59	10	1911	2623	686549817	686550538	0.000000e+00	915.0
13	TraesCS5B01G126900	chr1D	89.793	725	59	10	1911	2623	250931229	250931950	0.000000e+00	915.0
14	TraesCS5B01G126900	chr4D	89.655	725	60	10	1911	2623	509069928	509069207	0.000000e+00	909.0
15	TraesCS5B01G126900	chr7D	89.517	725	61	9	1911	2623	2518639	2517918	0.000000e+00	904.0
16	TraesCS5B01G126900	chr7D	89.517	725	61	9	1911	2623	312538851	312538130	0.000000e+00	904.0
17	TraesCS5B01G126900	chr7D	89.655	551	49	8	1	546	614935796	614936343	0.000000e+00	695.0
18	TraesCS5B01G126900	chr4B	89.837	551	44	9	4	545	574219421	574219968	0.000000e+00	697.0
19	TraesCS5B01G126900	chr3B	89.908	545	49	4	2	544	178324076	178324616	0.000000e+00	697.0
20	TraesCS5B01G126900	chr3B	89.818	550	40	10	3	546	269551078	269550539	0.000000e+00	691.0
21	TraesCS5B01G126900	chr3B	89.744	546	46	8	4	544	594841788	594842328	0.000000e+00	689.0
22	TraesCS5B01G126900	chrUn	89.493	552	48	9	2	546	461284353	461284901	0.000000e+00	689.0
23	TraesCS5B01G126900	chr6B	89.560	546	53	4	1	545	457675523	457674981	0.000000e+00	689.0
24	TraesCS5B01G126900	chr7A	84.337	83	11	1	1711	1793	6875028	6875108	2.160000e-11	80.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G126900	chr5B	231824031	231826653	2622	False	4844.0	4844	100.000000	1	2623	1	chr5B.!!$F1	2622
1	TraesCS5B01G126900	chr5B	207069240	207069785	545	True	702.0	702	89.964000	2	546	1	chr5B.!!$R1	544
2	TraesCS5B01G126900	chr5B	510336264	510336802	538	True	689.0	689	89.762000	1	544	1	chr5B.!!$R2	543
3	TraesCS5B01G126900	chr5A	284885541	284887011	1470	False	731.0	1472	94.185333	545	1909	3	chr5A.!!$F1	1364
4	TraesCS5B01G126900	chr5D	545621732	545622453	721	False	909.0	909	89.655000	1911	2623	1	chr5D.!!$F1	712
5	TraesCS5B01G126900	chr5D	216057793	216060629	2836	False	855.5	1319	93.505500	545	1710	2	chr5D.!!$F2	1165
6	TraesCS5B01G126900	chr3D	460946445	460947166	721	True	920.0	920	89.931000	1911	2623	1	chr3D.!!$R2	712
7	TraesCS5B01G126900	chr3D	180458193	180458914	721	True	904.0	904	89.503000	1911	2623	1	chr3D.!!$R1	712
8	TraesCS5B01G126900	chr2D	25212655	25213373	718	False	918.0	918	89.917000	1911	2623	1	chr2D.!!$F1	712
9	TraesCS5B01G126900	chr4A	686549817	686550538	721	False	915.0	915	89.793000	1911	2623	1	chr4A.!!$F1	712
10	TraesCS5B01G126900	chr1D	250931229	250931950	721	False	915.0	915	89.793000	1911	2623	1	chr1D.!!$F1	712
11	TraesCS5B01G126900	chr4D	509069207	509069928	721	True	909.0	909	89.655000	1911	2623	1	chr4D.!!$R1	712
12	TraesCS5B01G126900	chr7D	2517918	2518639	721	True	904.0	904	89.517000	1911	2623	1	chr7D.!!$R1	712
13	TraesCS5B01G126900	chr7D	312538130	312538851	721	True	904.0	904	89.517000	1911	2623	1	chr7D.!!$R2	712
14	TraesCS5B01G126900	chr7D	614935796	614936343	547	False	695.0	695	89.655000	1	546	1	chr7D.!!$F1	545
15	TraesCS5B01G126900	chr4B	574219421	574219968	547	False	697.0	697	89.837000	4	545	1	chr4B.!!$F1	541
16	TraesCS5B01G126900	chr3B	178324076	178324616	540	False	697.0	697	89.908000	2	544	1	chr3B.!!$F1	542
17	TraesCS5B01G126900	chr3B	269550539	269551078	539	True	691.0	691	89.818000	3	546	1	chr3B.!!$R1	543
18	TraesCS5B01G126900	chr3B	594841788	594842328	540	False	689.0	689	89.744000	4	544	1	chr3B.!!$F2	540
19	TraesCS5B01G126900	chrUn	461284353	461284901	548	False	689.0	689	89.493000	2	546	1	chrUn.!!$F1	544
20	TraesCS5B01G126900	chr6B	457674981	457675523	542	True	689.0	689	89.560000	1	545	1	chr6B.!!$R1	544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
278	303	0.38852	CGTGCTGACGGAACTCATCA	60.389	55.0	0.0	0.0	42.18	3.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1889	3699	0.032952	GTGTGTTCTCAGCCGTGGTA	59.967	55.0	0.0	0.0	0.0	3.25	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
185	206	1.202891	GCCCACCTCCACTGTTTACTT	60.203	52.381	0.00	0.00	0.00	2.24
278	303	0.388520	CGTGCTGACGGAACTCATCA	60.389	55.000	0.00	0.00	42.18	3.07
403	428	3.434641	TCGAGAAGACGTTCGACTACATT	59.565	43.478	5.99	0.00	40.55	2.71
406	431	5.791974	CGAGAAGACGTTCGACTACATTAAA	59.208	40.000	1.14	0.00	39.06	1.52
418	443	7.449827	TCGACTACATTAAATGCGTTAAGTTG	58.550	34.615	0.00	0.00	35.16	3.16
460	485	1.207329	GAGGGTACATGGACACACTCC	59.793	57.143	14.19	2.30	38.94	3.85
480	507	1.832998	CCCCCTTTGTTGCTATGCATT	59.167	47.619	3.54	0.00	38.76	3.56
482	509	3.307621	CCCCCTTTGTTGCTATGCATTTT	60.308	43.478	3.54	0.00	38.76	1.82
500	527	7.433680	TGCATTTTCTAGATAGATCTTGCGTA	58.566	34.615	0.00	0.00	38.32	4.42
502	529	8.765219	GCATTTTCTAGATAGATCTTGCGTAAA	58.235	33.333	0.00	0.00	38.32	2.01
558	587	3.699038	TCCCAACAGTTGTCTCCAAAAAG	59.301	43.478	12.42	0.00	30.94	2.27
663	697	9.667107	CCATGTTCTTAGTCAACCTAATTAGAA	57.333	33.333	14.28	0.00	35.14	2.10
747	815	6.436218	AGTTGGACTTTAAGTTTGGACAAGTT	59.564	34.615	0.00	0.00	0.00	2.66
805	2533	8.459521	TTTCATCCGTTTAAAATAATGTGCAG	57.540	30.769	0.00	0.00	0.00	4.41
935	2671	4.101448	ATCCTGCCTGACACCGCC	62.101	66.667	0.00	0.00	0.00	6.13
942	2678	4.694233	CTGACACCGCCTGCAGCT	62.694	66.667	8.66	0.00	40.39	4.24
964	2700	6.653320	AGCTCTCTCGTCATACTAAATCCTAG	59.347	42.308	0.00	0.00	0.00	3.02
965	2701	6.428771	GCTCTCTCGTCATACTAAATCCTAGT	59.571	42.308	0.00	0.00	0.00	2.57
966	2702	7.603404	GCTCTCTCGTCATACTAAATCCTAGTA	59.397	40.741	0.00	0.00	34.88	1.82
1090	2826	2.358898	GCAATGTCGTTAGCCATGGAAT	59.641	45.455	18.40	5.40	0.00	3.01
1118	2854	1.376609	ATCGGCCAAGAAACCATCGC	61.377	55.000	2.24	0.00	0.00	4.58
1143	2879	0.746923	TCACGATGATCGAGGACGGT	60.747	55.000	22.88	0.00	43.74	4.83
1271	3008	4.047059	GGCGACAACGAGGACGGA	62.047	66.667	0.00	0.00	44.46	4.69
1286	3023	4.240049	GGACAAGACCGACACGAC	57.760	61.111	0.00	0.00	0.00	4.34
1292	3029	3.097728	GACCGACACGACACGCAG	61.098	66.667	0.00	0.00	0.00	5.18
1323	3060	4.881440	GCGCCCATGCCCTGATGA	62.881	66.667	0.00	0.00	0.00	2.92
1409	3146	4.075682	TCTCATCCTACTATGCCTTCTCG	58.924	47.826	0.00	0.00	0.00	4.04
1533	3270	2.109799	CGAGCAGGGGATTCGCAT	59.890	61.111	2.94	0.00	0.00	4.73
1756	3566	1.619654	CCGCTCATCTCCTCTCTCAT	58.380	55.000	0.00	0.00	0.00	2.90
1771	3581	5.393569	CCTCTCTCATTCGCTTAGACAAAGA	60.394	44.000	0.00	0.00	37.38	2.52
1784	3594	7.301789	GCTTAGACAAAGATGAAAGGAGAAAC	58.698	38.462	0.00	0.00	37.38	2.78
1786	3596	6.625873	AGACAAAGATGAAAGGAGAAACAC	57.374	37.500	0.00	0.00	0.00	3.32
1788	3598	6.774656	AGACAAAGATGAAAGGAGAAACACAT	59.225	34.615	0.00	0.00	0.00	3.21
1800	3610	4.498009	GGAGAAACACATTGGACACAAGTG	60.498	45.833	0.00	0.00	40.49	3.16
1806	3616	2.693074	ACATTGGACACAAGTGTTTCCC	59.307	45.455	12.88	5.08	45.05	3.97
1815	3625	2.051345	GTGTTTCCCGCGCACAAG	60.051	61.111	8.75	0.00	33.70	3.16
1830	3640	4.988598	AAGCACCTCACCGCACGG	62.989	66.667	7.71	7.71	42.03	4.94
1848	3658	2.159142	ACGGACGGCCTAATCTTTACTG	60.159	50.000	5.33	0.00	0.00	2.74
1861	3671	3.476552	TCTTTACTGGGCACAAACTGAG	58.523	45.455	0.00	0.00	0.00	3.35
1869	3679	0.316204	GCACAAACTGAGCTTGGCAT	59.684	50.000	0.31	0.00	31.18	4.40
1905	3715	0.973632	ACATACCACGGCTGAGAACA	59.026	50.000	0.00	0.00	0.00	3.18
1909	3719	1.961277	CCACGGCTGAGAACACACC	60.961	63.158	0.00	0.00	0.00	4.16
1920	3730	5.518848	TGAGAACACACCGTAAGACTTAA	57.481	39.130	0.00	0.00	43.02	1.85
1923	3733	4.586001	AGAACACACCGTAAGACTTAAGGA	59.414	41.667	27.57	0.00	38.05	3.36
1925	3735	6.435277	AGAACACACCGTAAGACTTAAGGATA	59.565	38.462	27.57	0.00	38.05	2.59
1940	3750	1.134098	AGGATATGGGAAACTGCACGG	60.134	52.381	0.00	0.00	0.00	4.94
1946	3756	1.675641	GGAAACTGCACGGCATCCT	60.676	57.895	8.76	0.00	38.13	3.24
1950	3760	1.165270	AACTGCACGGCATCCTTAAC	58.835	50.000	0.00	0.00	38.13	2.01
1951	3761	0.324943	ACTGCACGGCATCCTTAACT	59.675	50.000	0.00	0.00	38.13	2.24
1960	3770	1.463674	CATCCTTAACTGGTGTGGCC	58.536	55.000	0.00	0.00	37.90	5.36
2008	3823	8.635328	ACACATACGGTACAATATACAAGATCA	58.365	33.333	0.00	0.00	0.00	2.92
2009	3824	9.129209	CACATACGGTACAATATACAAGATCAG	57.871	37.037	0.00	0.00	0.00	2.90
2018	3833	8.540507	ACAATATACAAGATCAGTACAGAGGT	57.459	34.615	0.00	0.00	0.00	3.85
2024	3839	7.956328	ACAAGATCAGTACAGAGGTTACATA	57.044	36.000	0.00	0.00	0.00	2.29
2070	3885	6.957631	TCTCAATCTTAACTATGCCCTGAAA	58.042	36.000	0.00	0.00	0.00	2.69
2120	3935	2.748465	GCCTACAAACTGAGGTTGTGGT	60.748	50.000	25.03	1.41	35.63	4.16
2122	3937	4.710324	CCTACAAACTGAGGTTGTGGTAA	58.290	43.478	25.03	4.77	35.63	2.85
2156	3971	5.876612	AGATGTCAGCAAGTTGATCTTTC	57.123	39.130	7.16	0.00	33.63	2.62
2157	3972	5.311265	AGATGTCAGCAAGTTGATCTTTCA	58.689	37.500	7.16	0.00	33.63	2.69
2174	3989	9.948964	TGATCTTTCAAAGAGATGAACTTGATA	57.051	29.630	5.94	0.00	41.61	2.15
2252	4069	2.542020	TTGTCCGAGCATGAAACTGA	57.458	45.000	0.00	0.00	0.00	3.41
2262	4079	6.417327	CGAGCATGAAACTGAATTAGATGAC	58.583	40.000	0.00	0.00	0.00	3.06
2280	4097	7.544804	AGATGACAGATATGTAGCACCAATA	57.455	36.000	0.00	0.00	0.00	1.90
2282	4099	8.039538	AGATGACAGATATGTAGCACCAATATG	58.960	37.037	0.00	0.00	0.00	1.78
2309	4126	0.607489	CAAAGGACAGGTGGCTGAGG	60.607	60.000	0.00	0.00	0.00	3.86
2313	4132	2.608988	ACAGGTGGCTGAGGGAGG	60.609	66.667	0.00	0.00	0.00	4.30
2355	4174	9.170734	CAATAAGGATTGTACCCATATGATCTG	57.829	37.037	3.65	0.00	38.13	2.90
2384	4203	4.240096	AGCATTTGCAACTGCTTTGTATC	58.760	39.130	31.75	8.25	46.22	2.24
2388	4207	2.862541	TGCAACTGCTTTGTATCCAGT	58.137	42.857	2.95	0.00	41.26	4.00
2395	4214	5.865085	ACTGCTTTGTATCCAGTTTCAGTA	58.135	37.500	0.00	0.00	36.48	2.74
2415	4234	3.088789	ACTACTCCTGGACACTGTAGG	57.911	52.381	19.22	7.04	36.04	3.18
2486	4305	3.797353	CCCCCGTGGATCACCTGG	61.797	72.222	0.00	0.00	35.39	4.45
2575	4394	5.431765	AGAAGTAAACCATATGAGGCAGTG	58.568	41.667	3.65	0.00	0.00	3.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
94	103	2.844348	CCGTATATAAAGGAGGGGGCAT	59.156	50.000	0.37	0.00	0.00	4.40
169	190	4.147321	TCGTAGAAGTAAACAGTGGAGGT	58.853	43.478	0.00	0.00	0.00	3.85
278	303	1.067283	CAGCAGAGTGTCGATGGAGTT	60.067	52.381	0.00	0.00	0.00	3.01
460	485	1.488390	ATGCATAGCAACAAAGGGGG	58.512	50.000	0.00	0.00	43.62	5.40
480	507	7.478322	ACGTTTACGCAAGATCTATCTAGAAA	58.522	34.615	0.00	0.00	44.43	2.52
482	509	6.615264	ACGTTTACGCAAGATCTATCTAGA	57.385	37.500	0.00	0.00	44.43	2.43
529	558	3.200483	AGACAACTGTTGGGAAACGTAC	58.800	45.455	23.15	4.74	34.12	3.67
584	613	3.021695	CCAATGCATGGTCTCTTCACAT	58.978	45.455	0.00	0.00	44.85	3.21
611	640	9.494271	GATCAATGCATGTCTAAACTATAAGGA	57.506	33.333	0.00	0.00	0.00	3.36
663	697	8.432805	CCCTCATACAGAAGTCCAATTAAGTAT	58.567	37.037	0.00	0.00	0.00	2.12
679	747	4.408921	TCATTACTCCCAACCCTCATACAG	59.591	45.833	0.00	0.00	0.00	2.74
714	782	7.817478	CCAAACTTAAAGTCCAACTTTTTCACT	59.183	33.333	10.08	0.00	45.38	3.41
733	801	6.096673	ACTTTTGACAACTTGTCCAAACTT	57.903	33.333	17.51	5.95	46.40	2.66
747	815	0.248296	GGTTGCGCGAACTTTTGACA	60.248	50.000	12.10	0.00	34.66	3.58
805	2533	6.775594	ATATTTTCCTTTTGCTGGGTACTC	57.224	37.500	0.00	0.00	0.00	2.59
935	2671	1.675483	AGTATGACGAGAGAGCTGCAG	59.325	52.381	10.11	10.11	0.00	4.41
942	2678	9.270640	GTTACTAGGATTTAGTATGACGAGAGA	57.729	37.037	0.00	0.00	30.99	3.10
964	2700	0.236187	TTCACGCGCCAACATGTTAC	59.764	50.000	11.53	5.75	0.00	2.50
965	2701	0.236187	GTTCACGCGCCAACATGTTA	59.764	50.000	11.53	0.00	0.00	2.41
966	2702	1.008995	GTTCACGCGCCAACATGTT	60.009	52.632	5.73	4.92	0.00	2.71
1015	2751	1.663074	GAGATCGGACAGATGCGGC	60.663	63.158	0.00	0.00	40.26	6.53
1021	2757	2.025155	GGCTACTTGAGATCGGACAGA	58.975	52.381	0.00	0.00	0.00	3.41
1118	2854	0.780596	CTCGATCATCGTGATTGCGG	59.219	55.000	7.00	3.66	41.35	5.69
1143	2879	2.910479	AGCACCTCGTCACCGTCA	60.910	61.111	0.00	0.00	35.01	4.35
1237	2974	2.202932	CGCGGAGGAAGGTGATGG	60.203	66.667	0.00	0.00	0.00	3.51
1271	3008	1.298863	CGTGTCGTGTCGGTCTTGT	60.299	57.895	0.00	0.00	0.00	3.16
1323	3060	4.208403	TGGCAGCAGGCAGTTGGT	62.208	61.111	0.00	0.00	46.46	3.67
1409	3146	1.226435	CCTCGAGCTGCTGTACGTC	60.226	63.158	7.01	0.00	0.00	4.34
1484	3221	2.331893	CGCCCAAGTGGAATTGCGA	61.332	57.895	11.76	0.00	42.18	5.10
1533	3270	1.982226	TCTCTGAAAATTCCCCACGGA	59.018	47.619	0.00	0.00	35.88	4.69
1536	3273	4.526970	TGCTATCTCTGAAAATTCCCCAC	58.473	43.478	0.00	0.00	0.00	4.61
1756	3566	5.547465	TCCTTTCATCTTTGTCTAAGCGAA	58.453	37.500	0.00	0.00	33.66	4.70
1771	3581	5.010012	GTGTCCAATGTGTTTCTCCTTTCAT	59.990	40.000	0.00	0.00	0.00	2.57
1800	3610	3.959975	TGCTTGTGCGCGGGAAAC	61.960	61.111	8.83	0.75	43.34	2.78
1830	3640	2.835027	CCCAGTAAAGATTAGGCCGTC	58.165	52.381	0.00	0.00	0.00	4.79
1848	3658	1.662044	CCAAGCTCAGTTTGTGCCC	59.338	57.895	0.09	0.00	37.57	5.36
1861	3671	0.859232	CACGTCGGTATATGCCAAGC	59.141	55.000	10.70	0.00	0.00	4.01
1889	3699	0.032952	GTGTGTTCTCAGCCGTGGTA	59.967	55.000	0.00	0.00	0.00	3.25
1895	3705	1.000506	TCTTACGGTGTGTTCTCAGCC	59.999	52.381	0.00	0.00	32.99	4.85
1905	3715	5.070047	CCCATATCCTTAAGTCTTACGGTGT	59.930	44.000	13.36	7.64	0.00	4.16
1909	3719	7.438459	CAGTTTCCCATATCCTTAAGTCTTACG	59.562	40.741	0.97	0.00	0.00	3.18
1920	3730	1.134098	CCGTGCAGTTTCCCATATCCT	60.134	52.381	0.00	0.00	0.00	3.24
1923	3733	0.034574	TGCCGTGCAGTTTCCCATAT	60.035	50.000	0.00	0.00	33.32	1.78
1925	3735	1.304381	ATGCCGTGCAGTTTCCCAT	60.304	52.632	4.90	0.00	43.65	4.00
1940	3750	0.811281	GCCACACCAGTTAAGGATGC	59.189	55.000	0.00	0.00	0.00	3.91
1973	3783	9.841295	ATATTGTACCGTATGTGTATCCTTTTT	57.159	29.630	0.00	0.00	0.00	1.94
1977	3787	8.640063	TGTATATTGTACCGTATGTGTATCCT	57.360	34.615	0.00	0.00	0.00	3.24
1982	3792	8.635328	TGATCTTGTATATTGTACCGTATGTGT	58.365	33.333	0.00	0.00	0.00	3.72
1983	3793	9.129209	CTGATCTTGTATATTGTACCGTATGTG	57.871	37.037	0.00	0.00	0.00	3.21
1984	3794	8.857098	ACTGATCTTGTATATTGTACCGTATGT	58.143	33.333	0.00	0.00	0.00	2.29
2041	3856	6.613271	AGGGCATAGTTAAGATTGAGAGAGAA	59.387	38.462	0.00	0.00	0.00	2.87
2042	3857	6.041409	CAGGGCATAGTTAAGATTGAGAGAGA	59.959	42.308	0.00	0.00	0.00	3.10
2046	3861	6.560003	TTCAGGGCATAGTTAAGATTGAGA	57.440	37.500	0.00	0.00	0.00	3.27
2070	3885	6.877322	AGGCACAATCTTAACGTACTTTGTAT	59.123	34.615	0.00	0.00	0.00	2.29
2091	3906	0.890542	CAGTTTGTAGGCTGCAGGCA	60.891	55.000	37.94	22.84	44.01	4.75
2120	3935	4.245660	CTGACATCTTCACGAAGCCTTTA	58.754	43.478	1.75	0.00	38.28	1.85
2122	3937	2.693069	CTGACATCTTCACGAAGCCTT	58.307	47.619	1.75	0.00	38.28	4.35
2174	3989	4.499183	GTGTTGCACAGAAGCTACTCTAT	58.501	43.478	0.00	0.00	40.21	1.98
2176	3991	2.760374	GTGTTGCACAGAAGCTACTCT	58.240	47.619	0.00	0.00	40.21	3.24
2252	4069	7.966812	TGGTGCTACATATCTGTCATCTAATT	58.033	34.615	0.00	0.00	36.79	1.40
2282	4099	0.182775	ACCTGTCCTTTGGTGTGACC	59.817	55.000	0.00	0.00	39.22	4.02
2295	4112	2.664081	CCTCCCTCAGCCACCTGTC	61.664	68.421	0.00	0.00	40.09	3.51
2313	4132	5.187967	TCCTTATTGAGAGAGTTGGGAGTTC	59.812	44.000	0.00	0.00	0.00	3.01
2355	4174	2.860062	CAGTTGCAAATGCTACAGCTC	58.140	47.619	14.60	0.00	46.50	4.09
2384	4203	4.082136	GTCCAGGAGTAGTACTGAAACTGG	60.082	50.000	22.39	22.39	44.20	4.00
2388	4207	4.523173	CAGTGTCCAGGAGTAGTACTGAAA	59.477	45.833	11.72	0.00	36.96	2.69
2395	4214	2.379226	ACCTACAGTGTCCAGGAGTAGT	59.621	50.000	17.39	2.13	32.36	2.73
2415	4234	0.517316	CTGGGCTGCTCGTAAACAAC	59.483	55.000	0.00	0.00	0.00	3.32
2443	4262	6.306987	ACATGTTGTCTTCTTTGGTCCTAAT	58.693	36.000	0.00	0.00	0.00	1.73
2481	4300	1.595311	TGGTAATCCAGATGCCAGGT	58.405	50.000	0.00	0.00	39.03	4.00
2534	4353	0.886490	CTTCAGCCAGCACCGTCTTT	60.886	55.000	0.00	0.00	0.00	2.52
2535	4354	1.302033	CTTCAGCCAGCACCGTCTT	60.302	57.895	0.00	0.00	0.00	3.01
2575	4394	3.788163	GCATTCTTCGCTATGTTTGCTTC	59.212	43.478	0.00	0.00	0.00	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.