Multiple sequence alignment - TraesCS5B01G126800
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BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5B01G126800
chr5B
100.000
2744
0
0
1
2744
231736036
231738779
0.000000e+00
5068.0
1
TraesCS5B01G126800
chr5D
92.245
2437
82
35
1
2385
215879603
215881984
0.000000e+00
3354.0
2
TraesCS5B01G126800
chr5D
92.614
176
13
0
2378
2553
215883508
215883683
1.260000e-63
254.0
3
TraesCS5B01G126800
chr5D
88.462
130
13
2
2534
2662
215883698
215883826
3.660000e-34
156.0
4
TraesCS5B01G126800
chr5A
93.709
1844
58
22
468
2266
284706713
284708543
0.000000e+00
2710.0
5
TraesCS5B01G126800
chr5A
88.060
402
44
4
2265
2665
284711028
284711426
8.890000e-130
473.0
6
TraesCS5B01G126800
chr5A
95.133
226
10
1
1
225
284705024
284705249
3.360000e-94
355.0
7
TraesCS5B01G126800
chr5A
90.943
265
5
3
218
482
284706451
284706696
3.380000e-89
339.0
8
TraesCS5B01G126800
chr4B
75.459
762
105
55
1006
1723
136532482
136533205
2.070000e-76
296.0
9
TraesCS5B01G126800
chr2D
93.023
86
6
0
2659
2744
269191015
269191100
2.870000e-25
126.0
10
TraesCS5B01G126800
chr1A
93.023
86
6
0
2659
2744
342235836
342235751
2.870000e-25
126.0
11
TraesCS5B01G126800
chr1A
93.023
86
6
0
2659
2744
342256158
342256073
2.870000e-25
126.0
12
TraesCS5B01G126800
chrUn
91.860
86
7
0
2659
2744
15263889
15263804
1.330000e-23
121.0
13
TraesCS5B01G126800
chrUn
91.860
86
7
0
2659
2744
15270131
15270046
1.330000e-23
121.0
14
TraesCS5B01G126800
chrUn
91.860
86
7
0
2659
2744
106461034
106461119
1.330000e-23
121.0
15
TraesCS5B01G126800
chrUn
91.860
86
7
0
2659
2744
106468116
106468201
1.330000e-23
121.0
16
TraesCS5B01G126800
chrUn
91.860
86
7
0
2659
2744
147735628
147735713
1.330000e-23
121.0
17
TraesCS5B01G126800
chrUn
91.860
86
7
0
2659
2744
150490285
150490200
1.330000e-23
121.0
18
TraesCS5B01G126800
chr3A
83.459
133
18
3
2529
2660
155416838
155416967
1.330000e-23
121.0
19
TraesCS5B01G126800
chr3B
96.970
33
1
0
6
38
622284857
622284889
3.820000e-04
56.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5B01G126800
chr5B
231736036
231738779
2743
False
5068.000000
5068
100.00000
1
2744
1
chr5B.!!$F1
2743
1
TraesCS5B01G126800
chr5D
215879603
215883826
4223
False
1254.666667
3354
91.10700
1
2662
3
chr5D.!!$F1
2661
2
TraesCS5B01G126800
chr5A
284705024
284711426
6402
False
969.250000
2710
91.96125
1
2665
4
chr5A.!!$F1
2664
3
TraesCS5B01G126800
chr4B
136532482
136533205
723
False
296.000000
296
75.45900
1006
1723
1
chr4B.!!$F1
717
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
384
1599
1.442688
GTTGTCGACGTACCGGTCC
60.443
63.158
12.4
0.0
33.3
4.46
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1961
3287
0.955905
TGGCCGTGCTTTTTAACTCC
59.044
50.0
0.0
0.0
0.0
3.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
33
34
8.768397
TCACTTAAAGGGCAGATTCTATTCTAA
58.232
33.333
0.00
0.00
0.00
2.10
38
39
7.623999
AAGGGCAGATTCTATTCTAATCTCA
57.376
36.000
0.00
0.00
40.81
3.27
186
188
8.197988
AGCAGACGTAAATAATTTTCCTACAG
57.802
34.615
0.00
0.00
0.00
2.74
216
218
3.306641
GCCTGAACTGAACTCTCACTCAT
60.307
47.826
0.00
0.00
0.00
2.90
332
1547
8.343366
GTTTTCCTTCACTCTTTTCGTTATTCT
58.657
33.333
0.00
0.00
0.00
2.40
333
1548
7.653767
TTCCTTCACTCTTTTCGTTATTCTC
57.346
36.000
0.00
0.00
0.00
2.87
334
1549
6.755206
TCCTTCACTCTTTTCGTTATTCTCA
58.245
36.000
0.00
0.00
0.00
3.27
335
1550
6.868864
TCCTTCACTCTTTTCGTTATTCTCAG
59.131
38.462
0.00
0.00
0.00
3.35
336
1551
6.647067
CCTTCACTCTTTTCGTTATTCTCAGT
59.353
38.462
0.00
0.00
0.00
3.41
337
1552
7.148722
CCTTCACTCTTTTCGTTATTCTCAGTC
60.149
40.741
0.00
0.00
0.00
3.51
382
1597
2.252260
CGTTGTCGACGTACCGGT
59.748
61.111
13.98
13.98
46.49
5.28
383
1598
1.793613
CGTTGTCGACGTACCGGTC
60.794
63.158
12.40
1.44
46.49
4.79
384
1599
1.442688
GTTGTCGACGTACCGGTCC
60.443
63.158
12.40
0.00
33.30
4.46
385
1600
1.600636
TTGTCGACGTACCGGTCCT
60.601
57.895
12.40
0.00
33.30
3.85
386
1601
1.855213
TTGTCGACGTACCGGTCCTG
61.855
60.000
12.40
4.42
33.30
3.86
387
1602
2.747460
TCGACGTACCGGTCCTGG
60.747
66.667
12.40
0.68
33.30
4.45
388
1603
4.487412
CGACGTACCGGTCCTGGC
62.487
72.222
12.40
2.72
33.30
4.85
389
1604
3.376078
GACGTACCGGTCCTGGCA
61.376
66.667
12.40
0.00
0.00
4.92
390
1605
2.682494
ACGTACCGGTCCTGGCAT
60.682
61.111
12.40
0.00
0.00
4.40
502
1748
4.387026
TCATGGTCCCAAAAGACAGATT
57.613
40.909
0.00
0.00
38.59
2.40
654
1910
2.226962
AGCCACAGAAAATGCCTCAT
57.773
45.000
0.00
0.00
0.00
2.90
729
1986
7.330700
GCCTTTTCTCTGACTATATATGTGCTC
59.669
40.741
0.00
0.00
0.00
4.26
805
2070
4.610605
TCTTAACTTGTCCGGATTGACA
57.389
40.909
7.81
0.00
43.26
3.58
812
2077
1.683025
TCCGGATTGACAGCCCGTA
60.683
57.895
0.00
0.00
41.53
4.02
899
2164
5.587289
AGTGCAATTTCGTTTTAGCTGAAA
58.413
33.333
0.00
0.00
36.19
2.69
900
2165
6.039616
AGTGCAATTTCGTTTTAGCTGAAAA
58.960
32.000
5.08
1.58
35.46
2.29
947
2212
5.390461
CCTGATCAAGTGCGATTTCGTTTTA
60.390
40.000
0.00
0.00
42.22
1.52
1380
2681
1.472878
TCCATGAAGAAGAGTCCGTCG
59.527
52.381
0.00
0.00
0.00
5.12
1383
2684
1.176619
TGAAGAAGAGTCCGTCGGCA
61.177
55.000
6.34
0.00
0.00
5.69
1915
3241
9.952188
CTACTACATCAACGAATTCAGAATCTA
57.048
33.333
6.22
0.00
0.00
1.98
1916
3242
8.635877
ACTACATCAACGAATTCAGAATCTAC
57.364
34.615
6.22
0.00
0.00
2.59
1918
3244
7.531280
ACATCAACGAATTCAGAATCTACTG
57.469
36.000
6.22
0.00
39.02
2.74
1961
3287
2.671914
GCATGCCGCCATTATAATGTGG
60.672
50.000
21.20
21.29
38.55
4.17
1975
3301
9.301153
CATTATAATGTGGGAGTTAAAAAGCAC
57.699
33.333
16.03
0.00
0.00
4.40
1979
3305
0.242825
GGGAGTTAAAAAGCACGGCC
59.757
55.000
0.00
0.00
0.00
6.13
2001
3327
5.331902
CCACGTATACAAAGGAATGCTTTG
58.668
41.667
22.66
22.66
44.64
2.77
2012
3340
8.647143
CAAAGGAATGCTTTGTCTAAGAAAAA
57.353
30.769
17.40
0.00
37.12
1.94
2116
3449
6.854496
TTTTCACTAGTGCAATTAACGTCT
57.146
33.333
18.45
0.00
0.00
4.18
2254
3596
5.472148
CAGATAGTTTGGCAAAAGCAATCA
58.528
37.500
15.29
0.00
0.00
2.57
2266
3608
6.744537
GGCAAAAGCAATCATATACGATGATC
59.255
38.462
0.72
0.00
37.75
2.92
2306
6134
0.746563
ACCCGTTTGCCATACATCCG
60.747
55.000
0.00
0.00
0.00
4.18
2371
6199
2.029290
GCCTATCACACACCCTATACCG
60.029
54.545
0.00
0.00
0.00
4.02
2376
7735
0.905809
ACACACCCTATACCGTGGCA
60.906
55.000
0.00
0.00
34.18
4.92
2457
7816
2.028385
GGGGCCTATCACGTCGAATATT
60.028
50.000
0.84
0.00
0.00
1.28
2466
7825
5.966636
TCACGTCGAATATTCATTTCTGG
57.033
39.130
15.57
0.00
0.00
3.86
2480
7839
0.620556
TTCTGGACCCAAGCTCATCC
59.379
55.000
0.00
0.00
0.00
3.51
2492
7851
1.269174
AGCTCATCCGATGTCGATGAG
59.731
52.381
24.31
24.31
45.53
2.90
2497
7856
0.455815
TCCGATGTCGATGAGTGGTG
59.544
55.000
3.62
0.00
43.02
4.17
2547
7906
2.271800
CATCGCAGGTTCACCTAGTTC
58.728
52.381
0.00
0.00
46.65
3.01
2553
7912
3.254060
CAGGTTCACCTAGTTCGTCATG
58.746
50.000
0.00
0.00
46.65
3.07
2591
7983
4.292186
ACTTAGCTCTCAAATGAAGCCA
57.708
40.909
0.00
0.32
0.00
4.75
2602
7994
6.716628
TCTCAAATGAAGCCACTACAAAGAAT
59.283
34.615
0.00
0.00
0.00
2.40
2620
8012
7.147444
ACAAAGAATACCTATTTGGGTCCGATA
60.147
37.037
0.00
0.00
40.48
2.92
2662
8055
0.976641
AGAACAAGAGGTGGATGCGA
59.023
50.000
0.00
0.00
0.00
5.10
2663
8056
1.079503
GAACAAGAGGTGGATGCGAC
58.920
55.000
0.00
0.00
0.00
5.19
2664
8057
0.687354
AACAAGAGGTGGATGCGACT
59.313
50.000
0.00
0.00
0.00
4.18
2665
8058
1.557099
ACAAGAGGTGGATGCGACTA
58.443
50.000
0.00
0.00
0.00
2.59
2666
8059
1.478510
ACAAGAGGTGGATGCGACTAG
59.521
52.381
0.00
0.00
0.00
2.57
2667
8060
1.751351
CAAGAGGTGGATGCGACTAGA
59.249
52.381
0.00
0.00
0.00
2.43
2668
8061
2.145397
AGAGGTGGATGCGACTAGAA
57.855
50.000
0.00
0.00
0.00
2.10
2669
8062
2.672098
AGAGGTGGATGCGACTAGAAT
58.328
47.619
0.00
0.00
0.00
2.40
2670
8063
2.625790
AGAGGTGGATGCGACTAGAATC
59.374
50.000
0.00
0.00
33.94
2.52
2671
8064
2.625790
GAGGTGGATGCGACTAGAATCT
59.374
50.000
0.00
0.00
35.15
2.40
2672
8065
3.034635
AGGTGGATGCGACTAGAATCTT
58.965
45.455
0.00
0.00
35.15
2.40
2673
8066
3.452627
AGGTGGATGCGACTAGAATCTTT
59.547
43.478
0.00
0.00
35.15
2.52
2674
8067
4.080863
AGGTGGATGCGACTAGAATCTTTT
60.081
41.667
0.00
0.00
35.15
2.27
2675
8068
4.636206
GGTGGATGCGACTAGAATCTTTTT
59.364
41.667
0.00
0.00
35.15
1.94
2694
8087
5.373812
TTTTTGAGAGTTCACTTCCTCCT
57.626
39.130
0.00
0.00
31.71
3.69
2695
8088
5.373812
TTTTGAGAGTTCACTTCCTCCTT
57.626
39.130
0.00
0.00
31.71
3.36
2696
8089
6.494666
TTTTGAGAGTTCACTTCCTCCTTA
57.505
37.500
0.00
0.00
31.71
2.69
2697
8090
5.730296
TTGAGAGTTCACTTCCTCCTTAG
57.270
43.478
0.00
0.00
31.71
2.18
2698
8091
3.511934
TGAGAGTTCACTTCCTCCTTAGC
59.488
47.826
0.00
0.00
0.00
3.09
2699
8092
3.767131
GAGAGTTCACTTCCTCCTTAGCT
59.233
47.826
0.00
0.00
0.00
3.32
2700
8093
3.767131
AGAGTTCACTTCCTCCTTAGCTC
59.233
47.826
0.00
0.00
0.00
4.09
2701
8094
3.767131
GAGTTCACTTCCTCCTTAGCTCT
59.233
47.826
0.00
0.00
0.00
4.09
2702
8095
4.164204
AGTTCACTTCCTCCTTAGCTCTT
58.836
43.478
0.00
0.00
0.00
2.85
2703
8096
4.020662
AGTTCACTTCCTCCTTAGCTCTTG
60.021
45.833
0.00
0.00
0.00
3.02
2704
8097
3.511477
TCACTTCCTCCTTAGCTCTTGT
58.489
45.455
0.00
0.00
0.00
3.16
2705
8098
4.673968
TCACTTCCTCCTTAGCTCTTGTA
58.326
43.478
0.00
0.00
0.00
2.41
2706
8099
5.084519
TCACTTCCTCCTTAGCTCTTGTAA
58.915
41.667
0.00
0.00
0.00
2.41
2707
8100
5.721960
TCACTTCCTCCTTAGCTCTTGTAAT
59.278
40.000
0.00
0.00
0.00
1.89
2708
8101
6.045955
CACTTCCTCCTTAGCTCTTGTAATC
58.954
44.000
0.00
0.00
0.00
1.75
2709
8102
5.961421
ACTTCCTCCTTAGCTCTTGTAATCT
59.039
40.000
0.00
0.00
0.00
2.40
2710
8103
6.442244
ACTTCCTCCTTAGCTCTTGTAATCTT
59.558
38.462
0.00
0.00
0.00
2.40
2711
8104
6.227298
TCCTCCTTAGCTCTTGTAATCTTG
57.773
41.667
0.00
0.00
0.00
3.02
2712
8105
4.813697
CCTCCTTAGCTCTTGTAATCTTGC
59.186
45.833
0.00
0.00
0.00
4.01
2713
8106
4.770795
TCCTTAGCTCTTGTAATCTTGCC
58.229
43.478
0.00
0.00
0.00
4.52
2714
8107
4.471386
TCCTTAGCTCTTGTAATCTTGCCT
59.529
41.667
0.00
0.00
0.00
4.75
2715
8108
5.045578
TCCTTAGCTCTTGTAATCTTGCCTT
60.046
40.000
0.00
0.00
0.00
4.35
2716
8109
5.065731
CCTTAGCTCTTGTAATCTTGCCTTG
59.934
44.000
0.00
0.00
0.00
3.61
2717
8110
4.026356
AGCTCTTGTAATCTTGCCTTGT
57.974
40.909
0.00
0.00
0.00
3.16
2718
8111
3.755378
AGCTCTTGTAATCTTGCCTTGTG
59.245
43.478
0.00
0.00
0.00
3.33
2719
8112
3.119708
GCTCTTGTAATCTTGCCTTGTGG
60.120
47.826
0.00
0.00
0.00
4.17
2720
8113
3.420893
TCTTGTAATCTTGCCTTGTGGG
58.579
45.455
0.00
0.00
38.36
4.61
2721
8114
3.073798
TCTTGTAATCTTGCCTTGTGGGA
59.926
43.478
0.00
0.00
37.23
4.37
2722
8115
3.071874
TGTAATCTTGCCTTGTGGGAG
57.928
47.619
0.00
0.00
37.23
4.30
2723
8116
2.290896
TGTAATCTTGCCTTGTGGGAGG
60.291
50.000
0.00
0.00
39.93
4.30
2731
8124
2.115343
CCTTGTGGGAGGCTAAACTC
57.885
55.000
0.00
0.00
37.23
3.01
2732
8125
1.351017
CCTTGTGGGAGGCTAAACTCA
59.649
52.381
0.00
0.00
39.27
3.41
2733
8126
2.427506
CTTGTGGGAGGCTAAACTCAC
58.572
52.381
0.00
0.00
41.33
3.51
2734
8127
1.729586
TGTGGGAGGCTAAACTCACT
58.270
50.000
6.30
0.00
41.52
3.41
2735
8128
2.054799
TGTGGGAGGCTAAACTCACTT
58.945
47.619
6.30
0.00
41.52
3.16
2736
8129
2.038557
TGTGGGAGGCTAAACTCACTTC
59.961
50.000
6.30
0.00
41.52
3.01
2737
8130
1.275291
TGGGAGGCTAAACTCACTTCG
59.725
52.381
0.00
0.00
41.52
3.79
2738
8131
1.275573
GGGAGGCTAAACTCACTTCGT
59.724
52.381
0.00
0.00
37.90
3.85
2739
8132
2.338500
GGAGGCTAAACTCACTTCGTG
58.662
52.381
0.00
0.00
39.27
4.35
2740
8133
2.029290
GGAGGCTAAACTCACTTCGTGA
60.029
50.000
0.00
0.00
40.50
4.35
2741
8134
3.368531
GGAGGCTAAACTCACTTCGTGAT
60.369
47.826
0.00
0.00
41.94
3.06
2742
8135
4.246458
GAGGCTAAACTCACTTCGTGATT
58.754
43.478
0.00
0.00
41.94
2.57
2743
8136
4.642429
AGGCTAAACTCACTTCGTGATTT
58.358
39.130
0.00
0.00
41.94
2.17
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
33
34
6.072199
AGAAGGATAAAAAGTGGCTGAGAT
57.928
37.500
0.00
0.00
0.00
2.75
38
39
7.462590
AGAAACTAGAAGGATAAAAAGTGGCT
58.537
34.615
0.00
0.00
0.00
4.75
186
188
3.406764
AGTTCAGTTCAGGCAGTTCATC
58.593
45.455
0.00
0.00
0.00
2.92
216
218
3.489355
CCATATTGCCATGGCTCAGTAA
58.511
45.455
35.53
22.16
39.18
2.24
332
1547
4.314440
GCGGTGCACTGGGACTGA
62.314
66.667
26.55
0.00
43.83
3.41
379
1594
2.124983
CAGGTGATGCCAGGACCG
60.125
66.667
0.00
0.00
40.61
4.79
380
1595
0.038166
TTTCAGGTGATGCCAGGACC
59.962
55.000
0.00
0.00
40.61
4.46
381
1596
2.019984
GATTTCAGGTGATGCCAGGAC
58.980
52.381
0.00
0.00
40.61
3.85
382
1597
1.064463
GGATTTCAGGTGATGCCAGGA
60.064
52.381
0.00
0.00
40.61
3.86
383
1598
1.396653
GGATTTCAGGTGATGCCAGG
58.603
55.000
0.00
0.00
40.61
4.45
384
1599
1.064166
AGGGATTTCAGGTGATGCCAG
60.064
52.381
0.00
0.00
40.61
4.85
385
1600
1.002069
AGGGATTTCAGGTGATGCCA
58.998
50.000
0.00
0.00
40.61
4.92
386
1601
1.396653
CAGGGATTTCAGGTGATGCC
58.603
55.000
0.00
0.00
34.31
4.40
387
1602
1.396653
CCAGGGATTTCAGGTGATGC
58.603
55.000
0.00
0.00
0.00
3.91
388
1603
1.064166
AGCCAGGGATTTCAGGTGATG
60.064
52.381
0.00
0.00
0.00
3.07
389
1604
1.064166
CAGCCAGGGATTTCAGGTGAT
60.064
52.381
0.00
0.00
0.00
3.06
390
1605
0.329261
CAGCCAGGGATTTCAGGTGA
59.671
55.000
0.00
0.00
0.00
4.02
434
1649
0.034574
TGCTTTCAGTGTGGGTGTGT
60.035
50.000
0.00
0.00
0.00
3.72
475
1721
4.523943
TGTCTTTTGGGACCATGAAATCTG
59.476
41.667
0.00
0.00
35.54
2.90
502
1748
5.393866
TCACATGGGTAGATAGTGCTATGA
58.606
41.667
0.00
0.00
0.00
2.15
729
1986
3.777925
CACTTGCGAGGAACGGCG
61.778
66.667
4.80
4.80
42.83
6.46
788
2048
1.523758
GCTGTCAATCCGGACAAGTT
58.476
50.000
6.12
0.00
46.36
2.66
805
2070
1.119574
AGTGAACACCTGTACGGGCT
61.120
55.000
21.25
5.56
36.97
5.19
834
2099
3.139850
GCCATGGAGAGATGATCACTTG
58.860
50.000
18.40
0.00
0.00
3.16
947
2212
0.957362
GCACTGCAAAGAGGAAGCTT
59.043
50.000
0.00
0.00
0.00
3.74
1215
2498
1.814793
GAACAAGAGGAGGTGAAGGC
58.185
55.000
0.00
0.00
0.00
4.35
1380
2681
4.479993
AGCAGCAGGGACGATGCC
62.480
66.667
0.00
0.00
44.97
4.40
1383
2684
2.898738
CAGAGCAGCAGGGACGAT
59.101
61.111
0.00
0.00
0.00
3.73
1894
3220
6.036517
GCAGTAGATTCTGAATTCGTTGATGT
59.963
38.462
4.11
0.00
37.61
3.06
1895
3221
6.417327
GCAGTAGATTCTGAATTCGTTGATG
58.583
40.000
4.11
0.20
37.61
3.07
1915
3241
2.893895
CGAGCCATGATGCGCAGT
60.894
61.111
18.32
3.82
36.02
4.40
1916
3242
2.466982
AACGAGCCATGATGCGCAG
61.467
57.895
18.32
2.01
36.02
5.18
1918
3244
2.023741
CAACGAGCCATGATGCGC
59.976
61.111
0.00
0.00
36.02
6.09
1953
3279
5.105917
CCGTGCTTTTTAACTCCCACATTAT
60.106
40.000
0.00
0.00
0.00
1.28
1961
3287
0.955905
TGGCCGTGCTTTTTAACTCC
59.044
50.000
0.00
0.00
0.00
3.85
1975
3301
2.012937
TTCCTTTGTATACGTGGCCG
57.987
50.000
0.00
0.00
40.83
6.13
2001
3327
5.955488
GGAAAGCATCCCTTTTTCTTAGAC
58.045
41.667
0.00
0.00
43.64
2.59
2116
3449
3.377798
GGGGATTTTAACCGTAATGCGAA
59.622
43.478
0.00
0.00
44.77
4.70
2161
3494
2.173669
CACATCATCGTGGGACGGC
61.174
63.158
0.00
0.00
42.81
5.68
2162
3495
2.173669
GCACATCATCGTGGGACGG
61.174
63.158
0.00
0.00
42.81
4.79
2223
3564
2.239402
TGCCAAACTATCTGCATCCTGA
59.761
45.455
0.00
0.00
0.00
3.86
2254
3596
3.058501
TCACGTGTGCGATCATCGTATAT
60.059
43.478
16.51
0.00
42.81
0.86
2266
3608
1.135373
ACCTCTAGAATCACGTGTGCG
60.135
52.381
16.51
0.00
44.93
5.34
2306
6134
2.160013
CGGACGAAACATTCAAGACGTC
60.160
50.000
7.70
7.70
45.64
4.34
2371
6199
1.130955
CATCGCAAACTTTGTGCCAC
58.869
50.000
9.79
0.00
40.84
5.01
2376
7735
1.032014
AGGTGCATCGCAAACTTTGT
58.968
45.000
3.48
0.00
41.47
2.83
2457
7816
1.704628
TGAGCTTGGGTCCAGAAATGA
59.295
47.619
0.00
0.00
0.00
2.57
2466
7825
0.179000
ACATCGGATGAGCTTGGGTC
59.821
55.000
23.98
0.00
0.00
4.46
2480
7839
2.278026
TTCACCACTCATCGACATCG
57.722
50.000
0.00
0.00
41.45
3.84
2522
7881
0.321653
GGTGAACCTGCGATGTCCTT
60.322
55.000
0.00
0.00
0.00
3.36
2573
7965
3.988976
AGTGGCTTCATTTGAGAGCTA
57.011
42.857
11.68
6.00
0.00
3.32
2591
7983
7.344134
GGACCCAAATAGGTATTCTTTGTAGT
58.656
38.462
0.00
0.00
41.42
2.73
2602
7994
5.662208
TCTTGTTATCGGACCCAAATAGGTA
59.338
40.000
0.00
0.00
41.42
3.08
2620
8012
1.745232
TGTTTGGCACGACTCTTGTT
58.255
45.000
0.00
0.00
0.00
2.83
2672
8065
5.373812
AGGAGGAAGTGAACTCTCAAAAA
57.626
39.130
0.00
0.00
34.22
1.94
2673
8066
5.373812
AAGGAGGAAGTGAACTCTCAAAA
57.626
39.130
0.00
0.00
34.22
2.44
2674
8067
5.511545
GCTAAGGAGGAAGTGAACTCTCAAA
60.512
44.000
0.00
0.00
34.22
2.69
2675
8068
4.021016
GCTAAGGAGGAAGTGAACTCTCAA
60.021
45.833
0.00
0.00
34.22
3.02
2676
8069
3.511934
GCTAAGGAGGAAGTGAACTCTCA
59.488
47.826
0.00
0.00
34.22
3.27
2677
8070
3.767131
AGCTAAGGAGGAAGTGAACTCTC
59.233
47.826
0.00
0.00
34.22
3.20
2678
8071
3.767131
GAGCTAAGGAGGAAGTGAACTCT
59.233
47.826
0.00
0.00
34.22
3.24
2679
8072
3.767131
AGAGCTAAGGAGGAAGTGAACTC
59.233
47.826
0.00
0.00
0.00
3.01
2680
8073
3.785364
AGAGCTAAGGAGGAAGTGAACT
58.215
45.455
0.00
0.00
0.00
3.01
2681
8074
4.249661
CAAGAGCTAAGGAGGAAGTGAAC
58.750
47.826
0.00
0.00
0.00
3.18
2682
8075
3.904339
ACAAGAGCTAAGGAGGAAGTGAA
59.096
43.478
0.00
0.00
0.00
3.18
2683
8076
3.511477
ACAAGAGCTAAGGAGGAAGTGA
58.489
45.455
0.00
0.00
0.00
3.41
2684
8077
3.971245
ACAAGAGCTAAGGAGGAAGTG
57.029
47.619
0.00
0.00
0.00
3.16
2685
8078
5.961421
AGATTACAAGAGCTAAGGAGGAAGT
59.039
40.000
0.00
0.00
0.00
3.01
2686
8079
6.478512
AGATTACAAGAGCTAAGGAGGAAG
57.521
41.667
0.00
0.00
0.00
3.46
2687
8080
6.644347
CAAGATTACAAGAGCTAAGGAGGAA
58.356
40.000
0.00
0.00
0.00
3.36
2688
8081
5.395768
GCAAGATTACAAGAGCTAAGGAGGA
60.396
44.000
0.00
0.00
0.00
3.71
2689
8082
4.813697
GCAAGATTACAAGAGCTAAGGAGG
59.186
45.833
0.00
0.00
0.00
4.30
2690
8083
4.813697
GGCAAGATTACAAGAGCTAAGGAG
59.186
45.833
0.00
0.00
0.00
3.69
2691
8084
4.471386
AGGCAAGATTACAAGAGCTAAGGA
59.529
41.667
0.00
0.00
0.00
3.36
2692
8085
4.775236
AGGCAAGATTACAAGAGCTAAGG
58.225
43.478
0.00
0.00
0.00
2.69
2693
8086
5.645497
ACAAGGCAAGATTACAAGAGCTAAG
59.355
40.000
0.00
0.00
0.00
2.18
2694
8087
5.412594
CACAAGGCAAGATTACAAGAGCTAA
59.587
40.000
0.00
0.00
0.00
3.09
2695
8088
4.937620
CACAAGGCAAGATTACAAGAGCTA
59.062
41.667
0.00
0.00
0.00
3.32
2696
8089
3.755378
CACAAGGCAAGATTACAAGAGCT
59.245
43.478
0.00
0.00
0.00
4.09
2697
8090
3.119708
CCACAAGGCAAGATTACAAGAGC
60.120
47.826
0.00
0.00
0.00
4.09
2698
8091
3.441572
CCCACAAGGCAAGATTACAAGAG
59.558
47.826
0.00
0.00
0.00
2.85
2699
8092
3.073798
TCCCACAAGGCAAGATTACAAGA
59.926
43.478
0.00
0.00
34.51
3.02
2700
8093
3.420893
TCCCACAAGGCAAGATTACAAG
58.579
45.455
0.00
0.00
34.51
3.16
2701
8094
3.420893
CTCCCACAAGGCAAGATTACAA
58.579
45.455
0.00
0.00
34.51
2.41
2702
8095
2.290896
CCTCCCACAAGGCAAGATTACA
60.291
50.000
0.00
0.00
34.51
2.41
2703
8096
2.369394
CCTCCCACAAGGCAAGATTAC
58.631
52.381
0.00
0.00
34.51
1.89
2704
8097
2.806945
CCTCCCACAAGGCAAGATTA
57.193
50.000
0.00
0.00
34.51
1.75
2705
8098
3.677963
CCTCCCACAAGGCAAGATT
57.322
52.632
0.00
0.00
34.51
2.40
2712
8105
1.351017
TGAGTTTAGCCTCCCACAAGG
59.649
52.381
0.00
0.00
39.62
3.61
2713
8106
2.039084
AGTGAGTTTAGCCTCCCACAAG
59.961
50.000
0.00
0.00
0.00
3.16
2714
8107
2.054799
AGTGAGTTTAGCCTCCCACAA
58.945
47.619
0.00
0.00
0.00
3.33
2715
8108
1.729586
AGTGAGTTTAGCCTCCCACA
58.270
50.000
0.00
0.00
0.00
4.17
2716
8109
2.701107
GAAGTGAGTTTAGCCTCCCAC
58.299
52.381
0.00
0.00
0.00
4.61
2717
8110
1.275291
CGAAGTGAGTTTAGCCTCCCA
59.725
52.381
0.00
0.00
0.00
4.37
2718
8111
1.275573
ACGAAGTGAGTTTAGCCTCCC
59.724
52.381
0.00
0.00
42.51
4.30
2719
8112
2.745515
ACGAAGTGAGTTTAGCCTCC
57.254
50.000
0.00
0.00
42.51
4.30
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.