Multiple sequence alignment - TraesCS5B01G126700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G126700 chr5B 100.000 5602 0 0 1 5602 231728304 231733905 0.000000e+00 10346.0
1 TraesCS5B01G126700 chr5B 90.278 432 37 3 5067 5493 633760951 633761382 1.360000e-155 560.0
2 TraesCS5B01G126700 chr5B 91.346 104 9 0 5499 5602 679747030 679747133 5.850000e-30 143.0
3 TraesCS5B01G126700 chr5D 92.653 4995 192 77 209 5067 215874126 215879081 0.000000e+00 7029.0
4 TraesCS5B01G126700 chr5D 87.838 148 16 2 1 147 215872142 215872288 7.460000e-39 172.0
5 TraesCS5B01G126700 chr5D 90.991 111 9 1 5492 5602 367440142 367440251 1.260000e-31 148.0
6 TraesCS5B01G126700 chr5D 94.545 55 1 2 2300 2353 457552671 457552724 3.600000e-12 84.2
7 TraesCS5B01G126700 chr5A 94.714 3046 91 29 2050 5067 284692742 284695745 0.000000e+00 4669.0
8 TraesCS5B01G126700 chr5A 90.555 2128 110 30 3 2046 284690320 284692440 0.000000e+00 2732.0
9 TraesCS5B01G126700 chr2B 90.164 427 40 2 5069 5494 762539946 762539521 6.340000e-154 555.0
10 TraesCS5B01G126700 chr2B 90.090 111 10 1 5492 5602 67539416 67539525 5.850000e-30 143.0
11 TraesCS5B01G126700 chr2B 90.090 111 10 1 5492 5602 484608811 484608920 5.850000e-30 143.0
12 TraesCS5B01G126700 chr2B 97.059 34 1 0 61 94 199744458 199744491 2.180000e-04 58.4
13 TraesCS5B01G126700 chr7B 90.238 420 41 0 5075 5494 504953369 504952950 2.950000e-152 549.0
14 TraesCS5B01G126700 chr4A 90.024 421 39 2 5077 5494 726843939 726843519 4.940000e-150 542.0
15 TraesCS5B01G126700 chr4A 89.826 403 34 5 5092 5487 732919728 732920130 1.390000e-140 510.0
16 TraesCS5B01G126700 chr4A 79.507 649 97 23 3648 4293 482135614 482134999 4.010000e-116 429.0
17 TraesCS5B01G126700 chr1D 88.018 434 44 6 5069 5494 474021217 474020784 1.800000e-139 507.0
18 TraesCS5B01G126700 chr1D 86.977 430 47 7 5068 5494 251717864 251717441 5.080000e-130 475.0
19 TraesCS5B01G126700 chr4B 88.544 419 43 3 5070 5487 656458357 656457943 2.330000e-138 503.0
20 TraesCS5B01G126700 chr4B 88.302 265 31 0 3696 3960 136530407 136530671 9.060000e-83 318.0
21 TraesCS5B01G126700 chr4B 79.744 469 59 23 985 1425 136527196 136527656 1.960000e-79 307.0
22 TraesCS5B01G126700 chr4B 80.093 432 66 14 2901 3317 136529655 136530081 2.540000e-78 303.0
23 TraesCS5B01G126700 chr7A 85.412 425 54 6 5073 5494 217379273 217379692 8.620000e-118 435.0
24 TraesCS5B01G126700 chr7A 84.270 89 14 0 57 145 463014037 463014125 2.780000e-13 87.9
25 TraesCS5B01G126700 chr4D 80.213 470 62 23 985 1429 96518318 96518781 1.950000e-84 324.0
26 TraesCS5B01G126700 chr4D 83.380 361 47 11 3604 3960 96521449 96521800 7.000000e-84 322.0
27 TraesCS5B01G126700 chr4D 80.465 430 69 10 2901 3317 96520783 96521210 1.170000e-81 315.0
28 TraesCS5B01G126700 chr4D 89.231 65 6 1 2301 2364 397679565 397679501 4.650000e-11 80.5
29 TraesCS5B01G126700 chr4D 83.333 84 13 1 62 145 485110846 485110764 6.020000e-10 76.8
30 TraesCS5B01G126700 chr2A 91.667 108 8 1 5495 5602 745120447 745120341 1.260000e-31 148.0
31 TraesCS5B01G126700 chr2A 100.000 48 0 0 2301 2348 88278078 88278031 7.730000e-14 89.8
32 TraesCS5B01G126700 chr1B 92.308 104 8 0 5499 5602 112189673 112189776 1.260000e-31 148.0
33 TraesCS5B01G126700 chr1B 90.090 111 10 1 5492 5602 623574303 623574412 5.850000e-30 143.0
34 TraesCS5B01G126700 chr1B 98.077 52 0 1 2301 2351 490725802 490725853 7.730000e-14 89.8
35 TraesCS5B01G126700 chr1B 96.296 54 1 1 2300 2352 633092414 633092361 2.780000e-13 87.9
36 TraesCS5B01G126700 chr1B 90.476 63 3 3 2283 2344 606634266 606634326 4.650000e-11 80.5
37 TraesCS5B01G126700 chr1B 97.727 44 1 0 60 103 342971805 342971762 6.020000e-10 76.8
38 TraesCS5B01G126700 chr7D 90.741 108 9 1 5495 5602 209039726 209039620 5.850000e-30 143.0
39 TraesCS5B01G126700 chr7D 90.741 108 9 1 5495 5602 618704840 618704946 5.850000e-30 143.0
40 TraesCS5B01G126700 chr7D 87.143 70 7 2 132 199 124848060 124847991 1.670000e-10 78.7
41 TraesCS5B01G126700 chr6A 91.935 62 2 3 2283 2343 563252471 563252412 3.600000e-12 84.2
42 TraesCS5B01G126700 chr3D 91.803 61 2 3 2283 2342 414368763 414368705 1.290000e-11 82.4
43 TraesCS5B01G126700 chr3D 89.231 65 3 4 2283 2345 349636663 349636725 1.670000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G126700 chr5B 231728304 231733905 5601 False 10346.000000 10346 100.000000 1 5602 1 chr5B.!!$F1 5601
1 TraesCS5B01G126700 chr5D 215872142 215879081 6939 False 3600.500000 7029 90.245500 1 5067 2 chr5D.!!$F3 5066
2 TraesCS5B01G126700 chr5A 284690320 284695745 5425 False 3700.500000 4669 92.634500 3 5067 2 chr5A.!!$F1 5064
3 TraesCS5B01G126700 chr4A 482134999 482135614 615 True 429.000000 429 79.507000 3648 4293 1 chr4A.!!$R1 645
4 TraesCS5B01G126700 chr4B 136527196 136530671 3475 False 309.333333 318 82.713000 985 3960 3 chr4B.!!$F1 2975
5 TraesCS5B01G126700 chr4D 96518318 96521800 3482 False 320.333333 324 81.352667 985 3960 3 chr4D.!!$F1 2975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 2044 1.003355 CGTCTTCCACAGTGGGCAT 60.003 57.895 20.14 0.0 38.32 4.40 F
952 2747 1.153647 CGCACCGGATTACAGCTCA 60.154 57.895 9.46 0.0 0.00 4.26 F
2074 4532 0.524862 CATTGCCACAGGTGCTTCTC 59.475 55.000 0.00 0.0 0.00 2.87 F
2714 5650 2.962421 TCTTGAACGGCCAAATTTCCTT 59.038 40.909 2.24 0.0 0.00 3.36 F
4193 7294 1.035139 GGCATCATAACCCTGGCTTG 58.965 55.000 0.00 0.0 33.09 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1219 3053 0.531974 AGAAACGACTTCCGCAGCAA 60.532 50.0 0.0 0.0 43.32 3.91 R
2329 4797 1.276622 AATGCAAGTACTCCCTCCGT 58.723 50.0 0.0 0.0 0.00 4.69 R
3231 6330 0.373716 GGCACGATTCCGCTGTTTAG 59.626 55.0 0.0 0.0 39.95 1.85 R
4419 7520 0.176910 TGCAGTGAGTTCCGTGTTGA 59.823 50.0 0.0 0.0 0.00 3.18 R
5454 8577 0.030908 CGAACTAGATCTCCGCCACC 59.969 60.0 0.0 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 122 2.228822 CAGCCCATGTCCAAAACACTAC 59.771 50.000 0.00 0.00 41.75 2.73
193 220 1.628846 ACAATTTCTGGGTAGCTCCGT 59.371 47.619 0.00 0.00 37.00 4.69
196 223 1.568504 TTTCTGGGTAGCTCCGTCAT 58.431 50.000 0.00 0.00 37.00 3.06
208 235 2.176546 CGTCATTGCCGGCAACAG 59.823 61.111 42.32 34.47 38.88 3.16
223 2000 2.917933 CAACAGTTCACTTCCTGGTCA 58.082 47.619 0.00 0.00 32.90 4.02
228 2005 2.093128 AGTTCACTTCCTGGTCAACGTT 60.093 45.455 0.00 0.00 0.00 3.99
235 2012 5.065474 CACTTCCTGGTCAACGTTTTTCTTA 59.935 40.000 0.00 0.00 0.00 2.10
257 2034 3.139850 TCCGTTTAAAATGCGTCTTCCA 58.860 40.909 0.00 0.00 0.00 3.53
260 2037 3.906008 CGTTTAAAATGCGTCTTCCACAG 59.094 43.478 0.00 0.00 0.00 3.66
267 2044 1.003355 CGTCTTCCACAGTGGGCAT 60.003 57.895 20.14 0.00 38.32 4.40
315 2093 1.589320 CCGTTTTGACGACTCAAACGA 59.411 47.619 24.83 3.93 44.48 3.85
376 2154 7.113658 TGTGTTGAAGTTTGGCCTAATTTTA 57.886 32.000 8.92 2.66 0.00 1.52
437 2224 2.158900 CGAGGATGGTAGGCTTGAACAT 60.159 50.000 0.00 0.00 0.00 2.71
447 2234 6.385759 TGGTAGGCTTGAACATAGAGGAAATA 59.614 38.462 0.00 0.00 0.00 1.40
532 2319 1.813513 CAGCAGGAACACTAACCAGG 58.186 55.000 0.00 0.00 0.00 4.45
562 2355 1.691219 GAGCTGGTCCCAATCCCAA 59.309 57.895 0.00 0.00 0.00 4.12
600 2393 4.263243 CCAACTCCAACTCCTCAGAAATCT 60.263 45.833 0.00 0.00 0.00 2.40
622 2415 5.186992 TCTCATCCTTTCTCGACCAAACATA 59.813 40.000 0.00 0.00 0.00 2.29
821 2615 6.238456 CCATCTAATCGCAAGCATAGAAACAA 60.238 38.462 0.00 0.00 37.63 2.83
861 2655 1.308998 CACCAAGAACTCCACCACAC 58.691 55.000 0.00 0.00 0.00 3.82
951 2746 3.706140 CGCACCGGATTACAGCTC 58.294 61.111 9.46 0.00 0.00 4.09
952 2747 1.153647 CGCACCGGATTACAGCTCA 60.154 57.895 9.46 0.00 0.00 4.26
1116 2929 2.653702 GACGTGCTGCAGAGAGGT 59.346 61.111 20.43 14.30 0.00 3.85
1258 3092 4.432741 GTTGCAGGGAGGAGGGCC 62.433 72.222 0.00 0.00 0.00 5.80
1408 3242 2.900106 GCTCCCAGTGCCAGGTCTT 61.900 63.158 0.00 0.00 0.00 3.01
1456 3430 7.499292 TCAACCATGTGATTTTGTTCTGAATT 58.501 30.769 0.00 0.00 0.00 2.17
1473 3447 1.680522 ATTCGAGGGCATCTGAGCGT 61.681 55.000 0.00 0.00 34.64 5.07
1490 3465 5.543714 TGAGCGTTCAGTTTATACTTCCAA 58.456 37.500 0.00 0.00 30.26 3.53
1538 3529 2.205307 ACGCCTGCTTCGTATAACTC 57.795 50.000 0.00 0.00 38.52 3.01
1547 3538 5.741011 TGCTTCGTATAACTCCTGGAATTT 58.259 37.500 0.00 0.00 0.00 1.82
1553 3544 8.583810 TCGTATAACTCCTGGAATTTAAATCG 57.416 34.615 0.10 5.00 0.00 3.34
1599 3593 9.924650 AGTTACACAAATGTAGTAGTCTTAAGG 57.075 33.333 1.85 0.00 42.29 2.69
1659 3655 5.047448 TGGTGTGATTCTCTCTCTTTCTCTG 60.047 44.000 0.00 0.00 0.00 3.35
1661 3657 4.525874 TGTGATTCTCTCTCTTTCTCTGCA 59.474 41.667 0.00 0.00 0.00 4.41
1662 3658 5.011431 TGTGATTCTCTCTCTTTCTCTGCAA 59.989 40.000 0.00 0.00 0.00 4.08
1664 3660 3.567576 TCTCTCTCTTTCTCTGCAACG 57.432 47.619 0.00 0.00 0.00 4.10
1750 3746 2.865308 GCCGTTTCCAGGCGTAAC 59.135 61.111 0.00 0.00 45.58 2.50
1757 3753 2.522836 TTCCAGGCGTAACGTTACAA 57.477 45.000 31.60 17.82 33.28 2.41
2074 4532 0.524862 CATTGCCACAGGTGCTTCTC 59.475 55.000 0.00 0.00 0.00 2.87
2092 4550 7.488792 GTGCTTCTCTAGTTAGTACTAAAAGCC 59.511 40.741 28.15 20.78 41.07 4.35
2183 4647 4.576463 CGGTCTGGCAGCTTCTTTAAATAT 59.424 41.667 10.34 0.00 0.00 1.28
2204 4668 8.978874 AATATTACTGATGTGCTTGTATTCCA 57.021 30.769 0.00 0.00 0.00 3.53
2216 4684 5.721000 TGCTTGTATTCCATTTTCATCCCTT 59.279 36.000 0.00 0.00 0.00 3.95
2217 4685 6.127366 TGCTTGTATTCCATTTTCATCCCTTC 60.127 38.462 0.00 0.00 0.00 3.46
2219 4687 6.091076 TGTATTCCATTTTCATCCCTTCCT 57.909 37.500 0.00 0.00 0.00 3.36
2240 4708 7.995463 TCCTTTTATTTCAGTTCGTTTTTGG 57.005 32.000 0.00 0.00 0.00 3.28
2317 4785 6.963083 ACCTATTAGTGATCTAAACGCTCT 57.037 37.500 0.00 0.00 39.23 4.09
2318 4786 7.349412 ACCTATTAGTGATCTAAACGCTCTT 57.651 36.000 0.00 0.00 39.23 2.85
2332 4800 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2334 4802 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2344 4814 5.649782 TTAGTTTACGGAGGGAGTACTTG 57.350 43.478 0.00 0.00 0.00 3.16
2363 4833 8.815912 AGTACTTGCATTTTTCAATAGGGAAAT 58.184 29.630 0.00 0.00 36.71 2.17
2402 4872 6.002082 AGTTTAAAGTTCACGCTCCCTTATT 58.998 36.000 0.00 0.00 0.00 1.40
2403 4873 6.489022 AGTTTAAAGTTCACGCTCCCTTATTT 59.511 34.615 0.00 0.00 0.00 1.40
2714 5650 2.962421 TCTTGAACGGCCAAATTTCCTT 59.038 40.909 2.24 0.00 0.00 3.36
2715 5651 3.386402 TCTTGAACGGCCAAATTTCCTTT 59.614 39.130 2.24 0.00 0.00 3.11
2719 5655 5.859495 TGAACGGCCAAATTTCCTTTAAAT 58.141 33.333 2.24 0.00 39.56 1.40
2869 5853 8.889717 GGAACCGTCTAAAATATTGAAATCTGA 58.110 33.333 0.00 0.00 0.00 3.27
3231 6330 1.446966 GAGCTTGTGAGAGACCGGC 60.447 63.158 0.00 0.00 0.00 6.13
3463 6562 5.187967 TCCTTTCTGAGTGGAACCTAATCTC 59.812 44.000 0.00 0.00 37.80 2.75
3467 6566 6.688073 TCTGAGTGGAACCTAATCTCTTTT 57.312 37.500 0.00 0.00 37.80 2.27
3505 6604 9.912634 AAGATATTGTCACAGGTTTATTGTTTG 57.087 29.630 0.00 0.00 0.00 2.93
3611 6711 9.764870 CTATGTTGACATTGACTGTTTATTCTG 57.235 33.333 1.46 0.00 38.54 3.02
3663 6763 7.186804 CCGACATATTTGATGACAAAAGGTAC 58.813 38.462 0.00 0.00 46.77 3.34
3853 6953 2.479560 GGCCGTTAATTTGATGGCTGAC 60.480 50.000 20.15 4.42 46.22 3.51
4009 7109 5.989168 TCATATGGTTAGGTGAATGCTTACG 59.011 40.000 2.13 0.00 0.00 3.18
4193 7294 1.035139 GGCATCATAACCCTGGCTTG 58.965 55.000 0.00 0.00 33.09 4.01
4208 7309 1.098050 GCTTGGCCGTTGATTCTCAT 58.902 50.000 0.00 0.00 0.00 2.90
4210 7311 2.358957 CTTGGCCGTTGATTCTCATCA 58.641 47.619 0.00 0.00 37.67 3.07
4339 7440 1.673665 CTGCACCTTCTGGCCAGAC 60.674 63.158 35.26 22.73 37.88 3.51
4419 7520 4.019174 CACCACTGATATTTCCTTGGCTT 58.981 43.478 1.47 0.00 0.00 4.35
4426 7527 4.155826 TGATATTTCCTTGGCTTCAACACG 59.844 41.667 0.00 0.00 0.00 4.49
4503 7604 4.785453 GCAAGGGGCAGTCCGGAG 62.785 72.222 3.06 0.00 43.97 4.63
4642 7743 4.337274 TGTCAACTCTCTTGTGTCGTAGAA 59.663 41.667 0.00 0.00 39.69 2.10
4667 7768 3.345808 CCGGTGTGTTCCTGCGTG 61.346 66.667 0.00 0.00 0.00 5.34
4732 7833 5.817816 AGGTCATGATCGTTGTATTCCTTTC 59.182 40.000 0.00 0.00 0.00 2.62
4765 7866 3.052036 TCCACACGTACGCTAACTTTTC 58.948 45.455 16.72 0.00 0.00 2.29
4831 7932 2.668212 CAGGCCGTTGCTTTCCGA 60.668 61.111 0.00 0.00 37.74 4.55
4865 7966 6.544564 AGTTTGTTGAAACCTCCGAAATTCTA 59.455 34.615 0.00 0.00 42.25 2.10
4915 8032 4.766891 AGTGTTATTGGAATGGTCAACTGG 59.233 41.667 0.00 0.00 0.00 4.00
4939 8056 6.763610 GGTAACCCACTATGATCTTTTCAGAG 59.236 42.308 0.00 0.00 46.89 3.35
4943 8060 6.098124 ACCCACTATGATCTTTTCAGAGAGAG 59.902 42.308 4.41 0.00 44.82 3.20
4983 8100 9.071276 GCTGATATCATCCTTCCTTTTGATTTA 57.929 33.333 5.72 0.00 31.59 1.40
5069 8192 9.027202 TCCCTGTTAAAGAAACCATAAAATACC 57.973 33.333 0.00 0.00 37.27 2.73
5070 8193 9.031537 CCCTGTTAAAGAAACCATAAAATACCT 57.968 33.333 0.00 0.00 37.27 3.08
5075 8198 6.937436 AAGAAACCATAAAATACCTAGCCG 57.063 37.500 0.00 0.00 0.00 5.52
5076 8199 4.820173 AGAAACCATAAAATACCTAGCCGC 59.180 41.667 0.00 0.00 0.00 6.53
5077 8200 3.136009 ACCATAAAATACCTAGCCGCC 57.864 47.619 0.00 0.00 0.00 6.13
5078 8201 2.709397 ACCATAAAATACCTAGCCGCCT 59.291 45.455 0.00 0.00 0.00 5.52
5079 8202 3.244457 ACCATAAAATACCTAGCCGCCTC 60.244 47.826 0.00 0.00 0.00 4.70
5080 8203 3.335579 CATAAAATACCTAGCCGCCTCC 58.664 50.000 0.00 0.00 0.00 4.30
5081 8204 1.508256 AAAATACCTAGCCGCCTCCT 58.492 50.000 0.00 0.00 0.00 3.69
5082 8205 1.049402 AAATACCTAGCCGCCTCCTC 58.951 55.000 0.00 0.00 0.00 3.71
5083 8206 0.832559 AATACCTAGCCGCCTCCTCC 60.833 60.000 0.00 0.00 0.00 4.30
5084 8207 2.020100 ATACCTAGCCGCCTCCTCCA 62.020 60.000 0.00 0.00 0.00 3.86
5085 8208 2.923634 TACCTAGCCGCCTCCTCCAC 62.924 65.000 0.00 0.00 0.00 4.02
5086 8209 3.541713 CTAGCCGCCTCCTCCACC 61.542 72.222 0.00 0.00 0.00 4.61
5090 8213 4.410400 CCGCCTCCTCCACCCAAC 62.410 72.222 0.00 0.00 0.00 3.77
5091 8214 4.410400 CGCCTCCTCCACCCAACC 62.410 72.222 0.00 0.00 0.00 3.77
5092 8215 4.048470 GCCTCCTCCACCCAACCC 62.048 72.222 0.00 0.00 0.00 4.11
5093 8216 2.204151 CCTCCTCCACCCAACCCT 60.204 66.667 0.00 0.00 0.00 4.34
5094 8217 1.082206 CCTCCTCCACCCAACCCTA 59.918 63.158 0.00 0.00 0.00 3.53
5095 8218 0.983378 CCTCCTCCACCCAACCCTAG 60.983 65.000 0.00 0.00 0.00 3.02
5096 8219 1.615424 TCCTCCACCCAACCCTAGC 60.615 63.158 0.00 0.00 0.00 3.42
5097 8220 2.680370 CCTCCACCCAACCCTAGCC 61.680 68.421 0.00 0.00 0.00 3.93
5098 8221 3.006728 TCCACCCAACCCTAGCCG 61.007 66.667 0.00 0.00 0.00 5.52
5099 8222 4.796495 CCACCCAACCCTAGCCGC 62.796 72.222 0.00 0.00 0.00 6.53
5100 8223 4.796495 CACCCAACCCTAGCCGCC 62.796 72.222 0.00 0.00 0.00 6.13
5104 8227 4.176752 CAACCCTAGCCGCCCCTC 62.177 72.222 0.00 0.00 0.00 4.30
5109 8232 4.548513 CTAGCCGCCCCTCCTCCT 62.549 72.222 0.00 0.00 0.00 3.69
5110 8233 4.541648 TAGCCGCCCCTCCTCCTC 62.542 72.222 0.00 0.00 0.00 3.71
5116 8239 4.825679 CCCCTCCTCCTCACCCCC 62.826 77.778 0.00 0.00 0.00 5.40
5117 8240 3.700350 CCCTCCTCCTCACCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
5118 8241 2.041405 CCTCCTCCTCACCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
5119 8242 2.041405 CTCCTCCTCACCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
5120 8243 3.695825 TCCTCCTCACCCCCTCCC 61.696 72.222 0.00 0.00 0.00 4.30
5121 8244 4.825679 CCTCCTCACCCCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
5122 8245 3.700350 CTCCTCACCCCCTCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
5123 8246 3.695825 TCCTCACCCCCTCCCCTC 61.696 72.222 0.00 0.00 0.00 4.30
5124 8247 4.825679 CCTCACCCCCTCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
5125 8248 3.700350 CTCACCCCCTCCCCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
5126 8249 3.695825 TCACCCCCTCCCCTCCTC 61.696 72.222 0.00 0.00 0.00 3.71
5127 8250 3.700350 CACCCCCTCCCCTCCTCT 61.700 72.222 0.00 0.00 0.00 3.69
5128 8251 3.369388 ACCCCCTCCCCTCCTCTC 61.369 72.222 0.00 0.00 0.00 3.20
5129 8252 3.039526 CCCCCTCCCCTCCTCTCT 61.040 72.222 0.00 0.00 0.00 3.10
5130 8253 2.612251 CCCCTCCCCTCCTCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
5131 8254 2.612251 CCCTCCCCTCCTCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
5132 8255 2.612251 CCTCCCCTCCTCTCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
5133 8256 2.018086 CCTCCCCTCCTCTCTCCCT 61.018 68.421 0.00 0.00 0.00 4.20
5134 8257 1.541672 CTCCCCTCCTCTCTCCCTC 59.458 68.421 0.00 0.00 0.00 4.30
5135 8258 2.197324 CCCCTCCTCTCTCCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
5136 8259 2.520741 CCCTCCTCTCTCCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
5137 8260 2.520741 CCTCCTCTCTCCCTCGCC 60.521 72.222 0.00 0.00 0.00 5.54
5138 8261 2.904866 CTCCTCTCTCCCTCGCCG 60.905 72.222 0.00 0.00 0.00 6.46
5207 8330 4.475135 GGGGCCTCGGTTGCTCTC 62.475 72.222 0.84 0.00 0.00 3.20
5208 8331 4.475135 GGGCCTCGGTTGCTCTCC 62.475 72.222 0.84 0.00 0.00 3.71
5209 8332 3.394836 GGCCTCGGTTGCTCTCCT 61.395 66.667 0.00 0.00 0.00 3.69
5210 8333 2.185608 GCCTCGGTTGCTCTCCTC 59.814 66.667 0.00 0.00 0.00 3.71
5211 8334 2.896443 CCTCGGTTGCTCTCCTCC 59.104 66.667 0.00 0.00 0.00 4.30
5212 8335 1.684049 CCTCGGTTGCTCTCCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
5213 8336 1.515020 CTCGGTTGCTCTCCTCCTG 59.485 63.158 0.00 0.00 0.00 3.86
5214 8337 1.228894 TCGGTTGCTCTCCTCCTGT 60.229 57.895 0.00 0.00 0.00 4.00
5215 8338 1.079543 CGGTTGCTCTCCTCCTGTG 60.080 63.158 0.00 0.00 0.00 3.66
5216 8339 1.821061 CGGTTGCTCTCCTCCTGTGT 61.821 60.000 0.00 0.00 0.00 3.72
5217 8340 0.321122 GGTTGCTCTCCTCCTGTGTG 60.321 60.000 0.00 0.00 0.00 3.82
5218 8341 0.321122 GTTGCTCTCCTCCTGTGTGG 60.321 60.000 0.00 0.00 37.10 4.17
5219 8342 1.483595 TTGCTCTCCTCCTGTGTGGG 61.484 60.000 0.00 0.00 36.20 4.61
5220 8343 2.664081 GCTCTCCTCCTGTGTGGGG 61.664 68.421 0.00 0.00 36.20 4.96
5221 8344 1.079256 CTCTCCTCCTGTGTGGGGA 59.921 63.158 0.00 0.00 39.16 4.81
5222 8345 0.545309 CTCTCCTCCTGTGTGGGGAA 60.545 60.000 0.00 0.00 39.16 3.97
5223 8346 0.119155 TCTCCTCCTGTGTGGGGAAT 59.881 55.000 0.00 0.00 39.16 3.01
5224 8347 1.364678 TCTCCTCCTGTGTGGGGAATA 59.635 52.381 0.00 0.00 39.16 1.75
5225 8348 1.486726 CTCCTCCTGTGTGGGGAATAC 59.513 57.143 0.00 0.00 39.16 1.89
5226 8349 0.546598 CCTCCTGTGTGGGGAATACC 59.453 60.000 0.00 0.00 39.16 2.73
5227 8350 0.178068 CTCCTGTGTGGGGAATACCG 59.822 60.000 0.00 0.00 39.16 4.02
5228 8351 1.223487 CCTGTGTGGGGAATACCGG 59.777 63.158 0.00 0.00 41.60 5.28
5229 8352 1.268992 CCTGTGTGGGGAATACCGGA 61.269 60.000 9.46 0.00 41.60 5.14
5230 8353 0.837272 CTGTGTGGGGAATACCGGAT 59.163 55.000 9.46 0.00 41.60 4.18
5231 8354 0.834612 TGTGTGGGGAATACCGGATC 59.165 55.000 9.46 2.88 41.60 3.36
5232 8355 1.129058 GTGTGGGGAATACCGGATCT 58.871 55.000 9.46 0.00 41.60 2.75
5233 8356 1.128200 TGTGGGGAATACCGGATCTG 58.872 55.000 9.46 0.00 41.60 2.90
5234 8357 0.396811 GTGGGGAATACCGGATCTGG 59.603 60.000 19.66 19.66 41.60 3.86
5235 8358 0.266453 TGGGGAATACCGGATCTGGA 59.734 55.000 27.90 11.15 41.60 3.86
5236 8359 0.977395 GGGGAATACCGGATCTGGAG 59.023 60.000 27.90 1.53 41.60 3.86
5237 8360 0.321996 GGGAATACCGGATCTGGAGC 59.678 60.000 27.90 12.04 36.97 4.70
5238 8361 0.038159 GGAATACCGGATCTGGAGCG 60.038 60.000 27.90 4.33 0.00 5.03
5239 8362 0.959553 GAATACCGGATCTGGAGCGA 59.040 55.000 27.90 9.41 0.00 4.93
5240 8363 0.674534 AATACCGGATCTGGAGCGAC 59.325 55.000 27.90 0.00 0.00 5.19
5241 8364 1.516365 ATACCGGATCTGGAGCGACG 61.516 60.000 27.90 1.94 0.00 5.12
5242 8365 2.598098 TACCGGATCTGGAGCGACGA 62.598 60.000 27.90 0.34 0.00 4.20
5243 8366 2.024871 CGGATCTGGAGCGACGAC 59.975 66.667 0.00 0.00 0.00 4.34
5244 8367 2.473760 CGGATCTGGAGCGACGACT 61.474 63.158 0.00 0.00 0.00 4.18
5245 8368 1.357334 GGATCTGGAGCGACGACTC 59.643 63.158 0.00 4.84 35.86 3.36
5251 8374 4.094684 GAGCGACGACTCCATTGG 57.905 61.111 0.00 0.00 0.00 3.16
5252 8375 1.511305 GAGCGACGACTCCATTGGA 59.489 57.895 5.05 5.05 0.00 3.53
5253 8376 0.108804 GAGCGACGACTCCATTGGAA 60.109 55.000 6.88 0.00 0.00 3.53
5254 8377 0.108615 AGCGACGACTCCATTGGAAG 60.109 55.000 6.88 4.10 0.00 3.46
5255 8378 1.084370 GCGACGACTCCATTGGAAGG 61.084 60.000 6.88 0.00 0.00 3.46
5256 8379 1.084370 CGACGACTCCATTGGAAGGC 61.084 60.000 6.88 2.77 0.00 4.35
5257 8380 0.036388 GACGACTCCATTGGAAGGCA 60.036 55.000 6.88 0.00 0.00 4.75
5258 8381 0.321653 ACGACTCCATTGGAAGGCAC 60.322 55.000 6.88 0.00 0.00 5.01
5259 8382 1.361668 CGACTCCATTGGAAGGCACG 61.362 60.000 6.88 4.86 0.00 5.34
5260 8383 1.002134 ACTCCATTGGAAGGCACGG 60.002 57.895 6.88 0.00 0.00 4.94
5261 8384 2.361104 TCCATTGGAAGGCACGGC 60.361 61.111 1.94 0.00 0.00 5.68
5273 8396 2.813908 CACGGCCGGCTAACAGTC 60.814 66.667 31.76 6.45 0.00 3.51
5274 8397 4.430765 ACGGCCGGCTAACAGTCG 62.431 66.667 31.76 21.40 44.05 4.18
5275 8398 4.430765 CGGCCGGCTAACAGTCGT 62.431 66.667 28.56 0.00 42.67 4.34
5276 8399 2.813908 GGCCGGCTAACAGTCGTG 60.814 66.667 28.56 0.00 42.67 4.35
5277 8400 3.488090 GCCGGCTAACAGTCGTGC 61.488 66.667 22.15 0.00 42.67 5.34
5278 8401 2.261671 CCGGCTAACAGTCGTGCT 59.738 61.111 0.00 0.00 42.67 4.40
5279 8402 2.094659 CCGGCTAACAGTCGTGCTG 61.095 63.158 0.00 7.90 42.67 4.41
5282 8405 1.291877 GGCTAACAGTCGTGCTGGTG 61.292 60.000 9.81 3.05 46.27 4.17
5283 8406 1.291877 GCTAACAGTCGTGCTGGTGG 61.292 60.000 9.81 8.24 46.27 4.61
5284 8407 0.033504 CTAACAGTCGTGCTGGTGGT 59.966 55.000 9.81 0.00 46.27 4.16
5285 8408 0.249699 TAACAGTCGTGCTGGTGGTG 60.250 55.000 9.81 0.00 46.27 4.17
5286 8409 2.666190 CAGTCGTGCTGGTGGTGG 60.666 66.667 2.61 0.00 41.42 4.61
5287 8410 2.842462 AGTCGTGCTGGTGGTGGA 60.842 61.111 0.00 0.00 0.00 4.02
5288 8411 2.665185 GTCGTGCTGGTGGTGGAC 60.665 66.667 0.00 0.00 0.00 4.02
5289 8412 3.936203 TCGTGCTGGTGGTGGACC 61.936 66.667 0.00 0.00 46.37 4.46
5291 8414 3.884774 GTGCTGGTGGTGGACCCA 61.885 66.667 0.00 0.00 45.45 4.51
5292 8415 3.569210 TGCTGGTGGTGGACCCAG 61.569 66.667 1.31 1.31 46.45 4.45
5294 8417 2.431683 CTGGTGGTGGACCCAGTG 59.568 66.667 0.00 0.00 46.45 3.66
5295 8418 2.367648 TGGTGGTGGACCCAGTGT 60.368 61.111 0.00 0.00 46.45 3.55
5296 8419 2.397413 CTGGTGGTGGACCCAGTGTC 62.397 65.000 0.00 0.00 46.45 3.67
5325 8448 4.077184 GGTGGCGTGATCCGGTGA 62.077 66.667 0.00 0.00 36.94 4.02
5326 8449 2.186903 GTGGCGTGATCCGGTGAT 59.813 61.111 0.00 0.00 36.94 3.06
5327 8450 1.883084 GTGGCGTGATCCGGTGATC 60.883 63.158 0.00 0.00 46.37 2.92
5333 8456 3.719214 GATCCGGTGATCGTTGGC 58.281 61.111 0.00 0.00 38.20 4.52
5334 8457 2.202878 ATCCGGTGATCGTTGGCG 60.203 61.111 0.00 0.00 37.11 5.69
5335 8458 3.733344 ATCCGGTGATCGTTGGCGG 62.733 63.158 0.00 0.00 38.89 6.13
5338 8461 4.778143 GGTGATCGTTGGCGGCCT 62.778 66.667 21.46 0.00 38.89 5.19
5339 8462 3.499737 GTGATCGTTGGCGGCCTG 61.500 66.667 21.46 10.24 38.89 4.85
5360 8483 4.147322 CGGTTGGTGTGCGCGATC 62.147 66.667 12.10 1.33 0.00 3.69
5361 8484 2.742372 GGTTGGTGTGCGCGATCT 60.742 61.111 12.10 0.00 0.00 2.75
5362 8485 2.476051 GTTGGTGTGCGCGATCTG 59.524 61.111 12.10 0.00 0.00 2.90
5363 8486 2.741985 TTGGTGTGCGCGATCTGG 60.742 61.111 12.10 0.00 0.00 3.86
5373 8496 3.854669 CGATCTGGCGCCTCCCTT 61.855 66.667 29.70 7.87 0.00 3.95
5374 8497 2.110006 GATCTGGCGCCTCCCTTC 59.890 66.667 29.70 13.32 0.00 3.46
5375 8498 3.468326 GATCTGGCGCCTCCCTTCC 62.468 68.421 29.70 6.48 0.00 3.46
5376 8499 4.722535 TCTGGCGCCTCCCTTCCT 62.723 66.667 29.70 0.00 0.00 3.36
5377 8500 4.168291 CTGGCGCCTCCCTTCCTC 62.168 72.222 29.70 0.00 0.00 3.71
5381 8504 4.806339 CGCCTCCCTTCCTCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
5382 8505 2.703430 GCCTCCCTTCCTCCCCTA 59.297 66.667 0.00 0.00 0.00 3.53
5383 8506 1.240428 GCCTCCCTTCCTCCCCTAT 59.760 63.158 0.00 0.00 0.00 2.57
5384 8507 0.402126 GCCTCCCTTCCTCCCCTATT 60.402 60.000 0.00 0.00 0.00 1.73
5385 8508 1.735926 CCTCCCTTCCTCCCCTATTC 58.264 60.000 0.00 0.00 0.00 1.75
5386 8509 1.343069 CTCCCTTCCTCCCCTATTCG 58.657 60.000 0.00 0.00 0.00 3.34
5387 8510 0.105142 TCCCTTCCTCCCCTATTCGG 60.105 60.000 0.00 0.00 0.00 4.30
5388 8511 1.755384 CCTTCCTCCCCTATTCGGC 59.245 63.158 0.00 0.00 0.00 5.54
5389 8512 1.367840 CTTCCTCCCCTATTCGGCG 59.632 63.158 0.00 0.00 0.00 6.46
5390 8513 1.382146 TTCCTCCCCTATTCGGCGT 60.382 57.895 6.85 0.00 0.00 5.68
5391 8514 1.682451 TTCCTCCCCTATTCGGCGTG 61.682 60.000 6.85 0.00 0.00 5.34
5392 8515 2.280186 CTCCCCTATTCGGCGTGC 60.280 66.667 6.85 0.00 0.00 5.34
5393 8516 4.215742 TCCCCTATTCGGCGTGCG 62.216 66.667 6.85 0.00 0.00 5.34
5424 8547 3.804193 GGGCCGCGCTTCTTCTTG 61.804 66.667 5.56 0.00 0.00 3.02
5425 8548 3.804193 GGCCGCGCTTCTTCTTGG 61.804 66.667 5.56 0.00 0.00 3.61
5426 8549 3.050275 GCCGCGCTTCTTCTTGGT 61.050 61.111 5.56 0.00 0.00 3.67
5427 8550 3.028366 GCCGCGCTTCTTCTTGGTC 62.028 63.158 5.56 0.00 0.00 4.02
5428 8551 2.730672 CCGCGCTTCTTCTTGGTCG 61.731 63.158 5.56 0.00 0.00 4.79
5429 8552 2.476499 GCGCTTCTTCTTGGTCGC 59.524 61.111 0.00 0.00 35.82 5.19
5430 8553 3.028366 GCGCTTCTTCTTGGTCGCC 62.028 63.158 0.00 0.00 37.02 5.54
5431 8554 2.730672 CGCTTCTTCTTGGTCGCCG 61.731 63.158 0.00 0.00 0.00 6.46
5432 8555 2.391389 GCTTCTTCTTGGTCGCCGG 61.391 63.158 0.00 0.00 0.00 6.13
5433 8556 1.004918 CTTCTTCTTGGTCGCCGGT 60.005 57.895 1.90 0.00 0.00 5.28
5434 8557 0.602905 CTTCTTCTTGGTCGCCGGTT 60.603 55.000 1.90 0.00 0.00 4.44
5435 8558 0.601841 TTCTTCTTGGTCGCCGGTTC 60.602 55.000 1.90 0.00 0.00 3.62
5436 8559 1.004918 CTTCTTGGTCGCCGGTTCT 60.005 57.895 1.90 0.00 0.00 3.01
5437 8560 1.291877 CTTCTTGGTCGCCGGTTCTG 61.292 60.000 1.90 0.00 0.00 3.02
5438 8561 2.030562 CTTGGTCGCCGGTTCTGT 59.969 61.111 1.90 0.00 0.00 3.41
5439 8562 1.180456 TCTTGGTCGCCGGTTCTGTA 61.180 55.000 1.90 0.00 0.00 2.74
5440 8563 1.005867 TTGGTCGCCGGTTCTGTAC 60.006 57.895 1.90 0.00 0.00 2.90
5441 8564 1.746322 TTGGTCGCCGGTTCTGTACA 61.746 55.000 1.90 0.00 0.00 2.90
5442 8565 1.445582 GGTCGCCGGTTCTGTACAG 60.446 63.158 17.17 17.17 0.00 2.74
5443 8566 1.445582 GTCGCCGGTTCTGTACAGG 60.446 63.158 22.48 8.35 44.10 4.00
5444 8567 1.604308 TCGCCGGTTCTGTACAGGA 60.604 57.895 22.48 11.97 44.02 3.86
5445 8568 1.153823 CGCCGGTTCTGTACAGGAG 60.154 63.158 22.48 11.05 44.02 3.69
5446 8569 1.218316 GCCGGTTCTGTACAGGAGG 59.782 63.158 22.48 19.11 44.02 4.30
5447 8570 1.542187 GCCGGTTCTGTACAGGAGGT 61.542 60.000 22.48 0.00 44.02 3.85
5448 8571 0.246635 CCGGTTCTGTACAGGAGGTG 59.753 60.000 22.48 6.64 44.02 4.00
5449 8572 0.389948 CGGTTCTGTACAGGAGGTGC 60.390 60.000 22.48 1.93 0.00 5.01
5450 8573 0.977395 GGTTCTGTACAGGAGGTGCT 59.023 55.000 22.48 0.00 32.71 4.40
5451 8574 1.338200 GGTTCTGTACAGGAGGTGCTG 60.338 57.143 22.48 0.00 32.71 4.41
5452 8575 0.321671 TTCTGTACAGGAGGTGCTGC 59.678 55.000 22.48 0.00 32.43 5.25
5453 8576 0.542938 TCTGTACAGGAGGTGCTGCT 60.543 55.000 22.48 0.00 32.43 4.24
5457 8580 2.359602 CAGGAGGTGCTGCTGGTG 60.360 66.667 0.00 0.00 44.36 4.17
5458 8581 3.644606 AGGAGGTGCTGCTGGTGG 61.645 66.667 0.00 0.00 29.14 4.61
5467 8590 2.685017 TGCTGGTGGCGGAGATCT 60.685 61.111 0.00 0.00 45.43 2.75
5468 8591 1.381191 TGCTGGTGGCGGAGATCTA 60.381 57.895 0.00 0.00 45.43 1.98
5469 8592 1.365633 GCTGGTGGCGGAGATCTAG 59.634 63.158 0.00 0.00 0.00 2.43
5470 8593 1.395826 GCTGGTGGCGGAGATCTAGT 61.396 60.000 0.00 0.00 0.00 2.57
5471 8594 1.115467 CTGGTGGCGGAGATCTAGTT 58.885 55.000 0.00 0.00 0.00 2.24
5472 8595 1.067821 CTGGTGGCGGAGATCTAGTTC 59.932 57.143 0.00 0.00 0.00 3.01
5473 8596 0.030908 GGTGGCGGAGATCTAGTTCG 59.969 60.000 0.00 0.00 0.00 3.95
5474 8597 0.030908 GTGGCGGAGATCTAGTTCGG 59.969 60.000 0.00 0.00 0.00 4.30
5475 8598 1.107538 TGGCGGAGATCTAGTTCGGG 61.108 60.000 0.00 0.00 0.00 5.14
5476 8599 1.007154 GCGGAGATCTAGTTCGGGC 60.007 63.158 0.00 0.00 0.00 6.13
5477 8600 1.660917 CGGAGATCTAGTTCGGGCC 59.339 63.158 0.00 0.00 0.00 5.80
5478 8601 1.107538 CGGAGATCTAGTTCGGGCCA 61.108 60.000 4.39 0.00 0.00 5.36
5479 8602 1.120530 GGAGATCTAGTTCGGGCCAA 58.879 55.000 4.39 0.00 0.00 4.52
5480 8603 1.485066 GGAGATCTAGTTCGGGCCAAA 59.515 52.381 4.39 0.00 0.00 3.28
5481 8604 2.104963 GGAGATCTAGTTCGGGCCAAAT 59.895 50.000 4.39 0.00 0.00 2.32
5482 8605 3.394719 GAGATCTAGTTCGGGCCAAATC 58.605 50.000 4.39 0.00 0.00 2.17
5483 8606 2.104963 AGATCTAGTTCGGGCCAAATCC 59.895 50.000 4.39 0.00 0.00 3.01
5484 8607 0.544697 TCTAGTTCGGGCCAAATCCC 59.455 55.000 4.39 0.00 43.02 3.85
5485 8608 0.546598 CTAGTTCGGGCCAAATCCCT 59.453 55.000 4.39 0.00 44.30 4.20
5486 8609 0.254747 TAGTTCGGGCCAAATCCCTG 59.745 55.000 4.39 0.00 44.30 4.45
5487 8610 2.362375 TTCGGGCCAAATCCCTGC 60.362 61.111 4.39 0.00 44.30 4.85
5488 8611 3.955543 TTCGGGCCAAATCCCTGCC 62.956 63.158 4.39 0.00 44.30 4.85
5511 8634 3.532155 GCTCGGTGGCGGAGATCT 61.532 66.667 0.00 0.00 33.52 2.75
5512 8635 2.194212 GCTCGGTGGCGGAGATCTA 61.194 63.158 0.00 0.00 33.52 1.98
5513 8636 1.953017 CTCGGTGGCGGAGATCTAG 59.047 63.158 0.00 0.00 33.52 2.43
5514 8637 0.820074 CTCGGTGGCGGAGATCTAGT 60.820 60.000 0.00 0.00 33.52 2.57
5515 8638 0.395311 TCGGTGGCGGAGATCTAGTT 60.395 55.000 0.00 0.00 0.00 2.24
5516 8639 0.030908 CGGTGGCGGAGATCTAGTTC 59.969 60.000 0.00 0.00 0.00 3.01
5517 8640 0.030908 GGTGGCGGAGATCTAGTTCG 59.969 60.000 0.00 0.00 0.00 3.95
5518 8641 0.030908 GTGGCGGAGATCTAGTTCGG 59.969 60.000 0.00 0.00 0.00 4.30
5519 8642 1.107538 TGGCGGAGATCTAGTTCGGG 61.108 60.000 0.00 0.00 0.00 5.14
5520 8643 1.007154 GCGGAGATCTAGTTCGGGC 60.007 63.158 0.00 0.00 0.00 6.13
5521 8644 1.283181 CGGAGATCTAGTTCGGGCG 59.717 63.158 0.00 0.00 0.00 6.13
5522 8645 1.164662 CGGAGATCTAGTTCGGGCGA 61.165 60.000 0.00 0.00 0.00 5.54
5523 8646 1.030457 GGAGATCTAGTTCGGGCGAA 58.970 55.000 0.00 0.00 0.00 4.70
5524 8647 1.407979 GGAGATCTAGTTCGGGCGAAA 59.592 52.381 0.00 0.00 35.75 3.46
5525 8648 2.036089 GGAGATCTAGTTCGGGCGAAAT 59.964 50.000 0.00 0.00 35.75 2.17
5526 8649 3.310246 GAGATCTAGTTCGGGCGAAATC 58.690 50.000 0.00 0.00 35.75 2.17
5527 8650 2.036089 AGATCTAGTTCGGGCGAAATCC 59.964 50.000 0.00 0.00 35.75 3.01
5528 8651 0.462789 TCTAGTTCGGGCGAAATCCC 59.537 55.000 0.00 0.00 43.02 3.85
5529 8652 0.464452 CTAGTTCGGGCGAAATCCCT 59.536 55.000 0.00 0.00 44.30 4.20
5530 8653 0.177141 TAGTTCGGGCGAAATCCCTG 59.823 55.000 0.00 0.00 44.30 4.45
5531 8654 2.437716 TTCGGGCGAAATCCCTGC 60.438 61.111 0.00 0.00 44.30 4.85
5538 8661 4.440829 GAAATCCCTGCCCGGCCA 62.441 66.667 7.03 0.00 0.00 5.36
5539 8662 4.759205 AAATCCCTGCCCGGCCAC 62.759 66.667 7.03 0.00 0.00 5.01
5576 8699 4.078516 GACGCCTAAGGGTGCCGT 62.079 66.667 0.00 0.00 46.37 5.68
5577 8700 3.600898 GACGCCTAAGGGTGCCGTT 62.601 63.158 1.70 1.70 46.37 4.44
5578 8701 2.359478 CGCCTAAGGGTGCCGTTT 60.359 61.111 1.33 0.00 36.23 3.60
5579 8702 2.396157 CGCCTAAGGGTGCCGTTTC 61.396 63.158 1.33 0.00 36.23 2.78
5580 8703 2.044555 GCCTAAGGGTGCCGTTTCC 61.045 63.158 1.33 0.00 34.45 3.13
5581 8704 1.378119 CCTAAGGGTGCCGTTTCCC 60.378 63.158 1.33 0.00 43.71 3.97
5585 8708 2.434774 GGGTGCCGTTTCCCTCTT 59.565 61.111 0.00 0.00 40.48 2.85
5586 8709 1.228459 GGGTGCCGTTTCCCTCTTT 60.228 57.895 0.00 0.00 40.48 2.52
5587 8710 1.524008 GGGTGCCGTTTCCCTCTTTG 61.524 60.000 0.00 0.00 40.48 2.77
5588 8711 1.524008 GGTGCCGTTTCCCTCTTTGG 61.524 60.000 0.00 0.00 0.00 3.28
5589 8712 0.536460 GTGCCGTTTCCCTCTTTGGA 60.536 55.000 0.00 0.00 38.35 3.53
5590 8713 0.250727 TGCCGTTTCCCTCTTTGGAG 60.251 55.000 0.00 0.00 38.35 3.86
5598 8721 2.657237 CTCTTTGGAGGCGTCGGT 59.343 61.111 0.00 0.00 36.03 4.69
5599 8722 1.888018 CTCTTTGGAGGCGTCGGTA 59.112 57.895 0.00 0.00 36.03 4.02
5600 8723 0.460311 CTCTTTGGAGGCGTCGGTAT 59.540 55.000 0.00 0.00 36.03 2.73
5601 8724 0.174845 TCTTTGGAGGCGTCGGTATG 59.825 55.000 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 122 6.966534 AGGCCCAATTTTTCATATACTCTG 57.033 37.500 0.00 0.00 0.00 3.35
193 220 0.821301 TGAACTGTTGCCGGCAATGA 60.821 50.000 41.80 29.55 38.28 2.57
196 223 1.034838 AAGTGAACTGTTGCCGGCAA 61.035 50.000 37.30 37.30 0.00 4.52
208 235 1.949465 ACGTTGACCAGGAAGTGAAC 58.051 50.000 0.00 0.00 31.43 3.18
228 2005 7.586747 AGACGCATTTTAAACGGATAAGAAAA 58.413 30.769 2.35 0.00 0.00 2.29
235 2012 3.754323 TGGAAGACGCATTTTAAACGGAT 59.246 39.130 2.35 0.00 0.00 4.18
267 2044 2.821685 CAGCCGGGCAGCACTATA 59.178 61.111 23.09 0.00 34.23 1.31
325 2103 3.486875 CCCAAGCGAACACCGATTTTATC 60.487 47.826 0.00 0.00 45.43 1.75
327 2105 1.807742 CCCAAGCGAACACCGATTTTA 59.192 47.619 0.00 0.00 45.43 1.52
376 2154 6.430007 AGGTGATTTCTAAAGCATCTCCAAT 58.570 36.000 0.74 0.00 41.53 3.16
404 2191 2.107552 ACCATCCTCGTTTCTTCCCAAA 59.892 45.455 0.00 0.00 0.00 3.28
437 2224 3.245443 CGCGTGCGTATTTCCTCTA 57.755 52.632 6.00 0.00 34.35 2.43
532 2319 0.179000 ACCAGCTCGTCATCATTCCC 59.821 55.000 0.00 0.00 0.00 3.97
562 2355 0.704664 GTTGGATTGAAGGGAGGGGT 59.295 55.000 0.00 0.00 0.00 4.95
600 2393 3.762407 TGTTTGGTCGAGAAAGGATGA 57.238 42.857 0.00 0.00 0.00 2.92
622 2415 2.296471 CGACCTAATCTAATCAGCGGGT 59.704 50.000 0.00 0.00 0.00 5.28
751 2544 5.722263 TGCAACCAATGAATCGATTGAATT 58.278 33.333 16.96 12.07 35.65 2.17
821 2615 1.268352 GATCGCTCGCTATTCAGGACT 59.732 52.381 0.00 0.00 0.00 3.85
861 2655 2.565841 GAGGAATGATTGGGGAACTCG 58.434 52.381 0.00 0.00 0.00 4.18
950 2745 2.905415 AAATCTGGCCCTTGTGATGA 57.095 45.000 0.00 0.00 0.00 2.92
951 2746 2.827322 TGAAAATCTGGCCCTTGTGATG 59.173 45.455 0.00 0.00 0.00 3.07
952 2747 3.094572 CTGAAAATCTGGCCCTTGTGAT 58.905 45.455 0.00 0.00 0.00 3.06
1057 2852 4.101077 CAGGGAGGAGGAGGGGCT 62.101 72.222 0.00 0.00 0.00 5.19
1219 3053 0.531974 AGAAACGACTTCCGCAGCAA 60.532 50.000 0.00 0.00 43.32 3.91
1258 3092 2.115266 ACAACCTTCGCCTTGGGG 59.885 61.111 0.00 0.00 0.00 4.96
1259 3093 2.919494 GCACAACCTTCGCCTTGGG 61.919 63.158 0.00 0.00 0.00 4.12
1408 3242 4.879197 TTGATGAAGAGAAGCAGAGACA 57.121 40.909 0.00 0.00 0.00 3.41
1456 3430 2.284798 GAACGCTCAGATGCCCTCGA 62.285 60.000 0.00 0.00 0.00 4.04
1484 3459 9.538508 GGGAAAATATCAAATTCAGATTGGAAG 57.461 33.333 0.00 0.00 29.19 3.46
1503 3478 4.620567 GCAGGCGTTAAATTCAGGGAAAAT 60.621 41.667 0.00 0.00 0.00 1.82
1508 3483 1.463674 AGCAGGCGTTAAATTCAGGG 58.536 50.000 0.00 0.00 0.00 4.45
1538 3529 4.881850 AGCCAGTACGATTTAAATTCCAGG 59.118 41.667 1.43 2.26 0.00 4.45
1547 3538 4.638421 CCCATTTCAAGCCAGTACGATTTA 59.362 41.667 0.00 0.00 0.00 1.40
1553 3544 2.215942 ACCCCATTTCAAGCCAGTAC 57.784 50.000 0.00 0.00 0.00 2.73
1661 3657 6.817140 CCTCTCTACTAAATAAAAGCACCGTT 59.183 38.462 0.00 0.00 0.00 4.44
1662 3658 6.338937 CCTCTCTACTAAATAAAAGCACCGT 58.661 40.000 0.00 0.00 0.00 4.83
1664 3660 6.885922 TCCCTCTCTACTAAATAAAAGCACC 58.114 40.000 0.00 0.00 0.00 5.01
1734 3730 3.161817 CGTTACGCCTGGAAACGG 58.838 61.111 16.70 4.16 41.60 4.44
1740 3736 2.613691 AGATTGTAACGTTACGCCTGG 58.386 47.619 28.13 0.00 36.45 4.45
1745 3741 5.634896 AGTGGAGTAGATTGTAACGTTACG 58.365 41.667 28.13 2.19 36.45 3.18
1747 3743 6.822667 TGAGTGGAGTAGATTGTAACGTTA 57.177 37.500 3.29 3.29 0.00 3.18
1750 3746 7.596749 AAATTGAGTGGAGTAGATTGTAACG 57.403 36.000 0.00 0.00 0.00 3.18
1901 4010 8.975663 AGATTACATCAAGTGACATGATTGAT 57.024 30.769 0.00 7.01 42.81 2.57
1943 4081 8.633075 AATGCTTATATCATGTTTTGTTTCGG 57.367 30.769 0.00 0.00 0.00 4.30
2183 4647 7.701539 AAATGGAATACAAGCACATCAGTAA 57.298 32.000 0.00 0.00 0.00 2.24
2204 4668 9.104713 ACTGAAATAAAAGGAAGGGATGAAAAT 57.895 29.630 0.00 0.00 0.00 1.82
2216 4684 6.477360 GCCAAAAACGAACTGAAATAAAAGGA 59.523 34.615 0.00 0.00 0.00 3.36
2217 4685 6.478673 AGCCAAAAACGAACTGAAATAAAAGG 59.521 34.615 0.00 0.00 0.00 3.11
2219 4687 7.835634 AAGCCAAAAACGAACTGAAATAAAA 57.164 28.000 0.00 0.00 0.00 1.52
2306 4774 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2307 4775 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2310 4778 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2314 4782 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2317 4785 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
2318 4786 9.071276 CAAGTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
2324 4792 2.233186 GCAAGTACTCCCTCCGTAAACT 59.767 50.000 0.00 0.00 0.00 2.66
2326 4794 2.250031 TGCAAGTACTCCCTCCGTAAA 58.750 47.619 0.00 0.00 0.00 2.01
2329 4797 1.276622 AATGCAAGTACTCCCTCCGT 58.723 50.000 0.00 0.00 0.00 4.69
2331 4799 4.079253 TGAAAAATGCAAGTACTCCCTCC 58.921 43.478 0.00 0.00 0.00 4.30
2332 4800 5.705609 TTGAAAAATGCAAGTACTCCCTC 57.294 39.130 0.00 0.00 0.00 4.30
2334 4802 6.405842 CCCTATTGAAAAATGCAAGTACTCCC 60.406 42.308 0.00 0.00 0.00 4.30
2344 4814 8.552083 AAGTTCATTTCCCTATTGAAAAATGC 57.448 30.769 0.00 0.00 38.42 3.56
2793 5731 7.655236 TGAATGTAAGGATGCAAACAATTTG 57.345 32.000 0.00 0.00 43.44 2.32
2869 5853 5.717119 CTGCAAAGTTAAGGATGCAAGAAT 58.283 37.500 9.46 0.00 46.97 2.40
3231 6330 0.373716 GGCACGATTCCGCTGTTTAG 59.626 55.000 0.00 0.00 39.95 1.85
3364 6463 8.511604 AATCACAACCATTAATAACTCTCTGG 57.488 34.615 0.00 0.00 0.00 3.86
3611 6711 7.422878 AGCAAGTAAAGTTTACTAGCTCAAC 57.577 36.000 24.90 11.59 0.00 3.18
3663 6763 3.493877 GGAAAGCAGATGAGATGATGACG 59.506 47.826 0.00 0.00 0.00 4.35
3853 6953 6.073980 TGTTTATCTTTTCTTCTTGGACGACG 60.074 38.462 0.00 0.00 0.00 5.12
4133 7234 2.079170 TTTGGGGCAAAGACACATCA 57.921 45.000 0.00 0.00 0.00 3.07
4208 7309 0.464373 GCCTTGATCCTTCCGCATGA 60.464 55.000 0.00 0.00 0.00 3.07
4210 7311 1.524621 CGCCTTGATCCTTCCGCAT 60.525 57.895 0.00 0.00 0.00 4.73
4339 7440 2.681848 GAGCCCTCTGTGTTCATGAATG 59.318 50.000 12.12 3.20 0.00 2.67
4419 7520 0.176910 TGCAGTGAGTTCCGTGTTGA 59.823 50.000 0.00 0.00 0.00 3.18
4426 7527 0.595095 CTTGCCTTGCAGTGAGTTCC 59.405 55.000 0.00 0.00 40.61 3.62
4642 7743 1.746517 GAACACACCGGGTCAGTCT 59.253 57.895 6.32 0.00 0.00 3.24
4667 7768 4.809426 ACATCAAAATTCGGTCGATCCTAC 59.191 41.667 0.00 0.00 0.00 3.18
4732 7833 3.354089 ACGTGTGGAAGCAAATCAAAG 57.646 42.857 0.00 0.00 0.00 2.77
4799 7900 3.434299 ACGGCCTGTGTTTAATTTACTCG 59.566 43.478 0.00 0.00 0.00 4.18
4865 7966 4.348168 AGTGAAAGATAGCCACCGGAATAT 59.652 41.667 9.46 0.00 0.00 1.28
4915 8032 7.556844 TCTCTGAAAAGATCATAGTGGGTTAC 58.443 38.462 0.00 0.00 37.44 2.50
4939 8056 3.119602 TCAGCAACCGTGTACATACTCTC 60.120 47.826 0.00 0.00 0.00 3.20
4943 8060 5.286438 TGATATCAGCAACCGTGTACATAC 58.714 41.667 0.00 0.00 0.00 2.39
4983 8100 8.034313 TGGCCAAAGTATATCATCTACTTTCT 57.966 34.615 0.61 0.00 43.89 2.52
4984 8101 8.854614 ATGGCCAAAGTATATCATCTACTTTC 57.145 34.615 10.96 0.00 43.89 2.62
5067 8190 4.075793 TGGAGGAGGCGGCTAGGT 62.076 66.667 13.24 0.00 0.00 3.08
5068 8191 3.541713 GTGGAGGAGGCGGCTAGG 61.542 72.222 13.24 0.00 0.00 3.02
5069 8192 3.541713 GGTGGAGGAGGCGGCTAG 61.542 72.222 13.24 0.00 0.00 3.42
5073 8196 4.410400 GTTGGGTGGAGGAGGCGG 62.410 72.222 0.00 0.00 0.00 6.13
5074 8197 4.410400 GGTTGGGTGGAGGAGGCG 62.410 72.222 0.00 0.00 0.00 5.52
5075 8198 4.048470 GGGTTGGGTGGAGGAGGC 62.048 72.222 0.00 0.00 0.00 4.70
5076 8199 0.983378 CTAGGGTTGGGTGGAGGAGG 60.983 65.000 0.00 0.00 0.00 4.30
5077 8200 1.627297 GCTAGGGTTGGGTGGAGGAG 61.627 65.000 0.00 0.00 0.00 3.69
5078 8201 1.615424 GCTAGGGTTGGGTGGAGGA 60.615 63.158 0.00 0.00 0.00 3.71
5079 8202 2.680370 GGCTAGGGTTGGGTGGAGG 61.680 68.421 0.00 0.00 0.00 4.30
5080 8203 2.998949 GGCTAGGGTTGGGTGGAG 59.001 66.667 0.00 0.00 0.00 3.86
5081 8204 3.006728 CGGCTAGGGTTGGGTGGA 61.007 66.667 0.00 0.00 0.00 4.02
5082 8205 4.796495 GCGGCTAGGGTTGGGTGG 62.796 72.222 0.00 0.00 0.00 4.61
5083 8206 4.796495 GGCGGCTAGGGTTGGGTG 62.796 72.222 0.00 0.00 0.00 4.61
5087 8210 4.176752 GAGGGGCGGCTAGGGTTG 62.177 72.222 9.56 0.00 0.00 3.77
5092 8215 4.548513 AGGAGGAGGGGCGGCTAG 62.549 72.222 9.56 0.00 0.00 3.42
5093 8216 4.541648 GAGGAGGAGGGGCGGCTA 62.542 72.222 9.56 0.00 0.00 3.93
5099 8222 4.825679 GGGGGTGAGGAGGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
5100 8223 3.700350 AGGGGGTGAGGAGGAGGG 61.700 72.222 0.00 0.00 0.00 4.30
5101 8224 2.041405 GAGGGGGTGAGGAGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
5102 8225 2.041405 GGAGGGGGTGAGGAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
5103 8226 3.695825 GGGAGGGGGTGAGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
5104 8227 4.825679 GGGGAGGGGGTGAGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
5105 8228 3.700350 AGGGGAGGGGGTGAGGAG 61.700 72.222 0.00 0.00 0.00 3.69
5106 8229 3.695825 GAGGGGAGGGGGTGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
5107 8230 4.825679 GGAGGGGAGGGGGTGAGG 62.826 77.778 0.00 0.00 0.00 3.86
5108 8231 3.700350 AGGAGGGGAGGGGGTGAG 61.700 72.222 0.00 0.00 0.00 3.51
5109 8232 3.695825 GAGGAGGGGAGGGGGTGA 61.696 72.222 0.00 0.00 0.00 4.02
5110 8233 3.700350 AGAGGAGGGGAGGGGGTG 61.700 72.222 0.00 0.00 0.00 4.61
5111 8234 3.369388 GAGAGGAGGGGAGGGGGT 61.369 72.222 0.00 0.00 0.00 4.95
5112 8235 3.039526 AGAGAGGAGGGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
5113 8236 2.612251 GAGAGAGGAGGGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
5114 8237 2.612251 GGAGAGAGGAGGGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
5115 8238 2.018086 AGGGAGAGAGGAGGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
5116 8239 1.541672 GAGGGAGAGAGGAGGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
5117 8240 2.387772 CGAGGGAGAGAGGAGGGGA 61.388 68.421 0.00 0.00 0.00 4.81
5118 8241 2.197324 CGAGGGAGAGAGGAGGGG 59.803 72.222 0.00 0.00 0.00 4.79
5119 8242 2.520741 GCGAGGGAGAGAGGAGGG 60.521 72.222 0.00 0.00 0.00 4.30
5120 8243 2.520741 GGCGAGGGAGAGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
5121 8244 2.904866 CGGCGAGGGAGAGAGGAG 60.905 72.222 0.00 0.00 0.00 3.69
5190 8313 4.475135 GAGAGCAACCGAGGCCCC 62.475 72.222 0.00 0.00 0.00 5.80
5191 8314 4.475135 GGAGAGCAACCGAGGCCC 62.475 72.222 0.00 0.00 0.00 5.80
5192 8315 3.378399 GAGGAGAGCAACCGAGGCC 62.378 68.421 0.00 0.00 0.00 5.19
5193 8316 2.185608 GAGGAGAGCAACCGAGGC 59.814 66.667 0.00 0.00 0.00 4.70
5194 8317 1.684049 AGGAGGAGAGCAACCGAGG 60.684 63.158 0.00 0.00 0.00 4.63
5195 8318 1.254284 ACAGGAGGAGAGCAACCGAG 61.254 60.000 0.00 0.00 0.00 4.63
5196 8319 1.228894 ACAGGAGGAGAGCAACCGA 60.229 57.895 0.00 0.00 0.00 4.69
5197 8320 1.079543 CACAGGAGGAGAGCAACCG 60.080 63.158 0.00 0.00 0.00 4.44
5198 8321 0.321122 CACACAGGAGGAGAGCAACC 60.321 60.000 0.00 0.00 0.00 3.77
5199 8322 0.321122 CCACACAGGAGGAGAGCAAC 60.321 60.000 0.00 0.00 41.22 4.17
5200 8323 1.483595 CCCACACAGGAGGAGAGCAA 61.484 60.000 0.00 0.00 41.22 3.91
5201 8324 1.915266 CCCACACAGGAGGAGAGCA 60.915 63.158 0.00 0.00 41.22 4.26
5202 8325 2.664081 CCCCACACAGGAGGAGAGC 61.664 68.421 0.00 0.00 41.22 4.09
5203 8326 0.545309 TTCCCCACACAGGAGGAGAG 60.545 60.000 0.00 0.00 41.22 3.20
5204 8327 0.119155 ATTCCCCACACAGGAGGAGA 59.881 55.000 0.00 0.00 41.22 3.71
5205 8328 1.486726 GTATTCCCCACACAGGAGGAG 59.513 57.143 0.00 0.00 41.22 3.69
5206 8329 1.580059 GTATTCCCCACACAGGAGGA 58.420 55.000 0.00 0.00 41.22 3.71
5207 8330 0.546598 GGTATTCCCCACACAGGAGG 59.453 60.000 0.00 0.00 41.22 4.30
5208 8331 0.178068 CGGTATTCCCCACACAGGAG 59.822 60.000 0.00 0.00 41.22 3.69
5209 8332 1.268992 CCGGTATTCCCCACACAGGA 61.269 60.000 0.00 0.00 41.22 3.86
5210 8333 1.223487 CCGGTATTCCCCACACAGG 59.777 63.158 0.00 0.00 37.03 4.00
5211 8334 0.837272 ATCCGGTATTCCCCACACAG 59.163 55.000 0.00 0.00 0.00 3.66
5212 8335 0.834612 GATCCGGTATTCCCCACACA 59.165 55.000 0.00 0.00 0.00 3.72
5213 8336 1.129058 AGATCCGGTATTCCCCACAC 58.871 55.000 0.00 0.00 0.00 3.82
5214 8337 1.128200 CAGATCCGGTATTCCCCACA 58.872 55.000 0.00 0.00 0.00 4.17
5215 8338 0.396811 CCAGATCCGGTATTCCCCAC 59.603 60.000 0.00 0.00 0.00 4.61
5216 8339 0.266453 TCCAGATCCGGTATTCCCCA 59.734 55.000 0.00 0.00 0.00 4.96
5217 8340 0.977395 CTCCAGATCCGGTATTCCCC 59.023 60.000 0.00 0.00 0.00 4.81
5218 8341 0.321996 GCTCCAGATCCGGTATTCCC 59.678 60.000 0.00 0.00 0.00 3.97
5219 8342 0.038159 CGCTCCAGATCCGGTATTCC 60.038 60.000 0.00 0.00 0.00 3.01
5220 8343 0.959553 TCGCTCCAGATCCGGTATTC 59.040 55.000 0.00 0.00 0.00 1.75
5221 8344 0.674534 GTCGCTCCAGATCCGGTATT 59.325 55.000 0.00 0.00 0.00 1.89
5222 8345 1.516365 CGTCGCTCCAGATCCGGTAT 61.516 60.000 0.00 0.00 0.00 2.73
5223 8346 2.184830 CGTCGCTCCAGATCCGGTA 61.185 63.158 0.00 0.00 0.00 4.02
5224 8347 3.518998 CGTCGCTCCAGATCCGGT 61.519 66.667 0.00 0.00 0.00 5.28
5225 8348 3.209812 TCGTCGCTCCAGATCCGG 61.210 66.667 0.00 0.00 0.00 5.14
5226 8349 2.024871 GTCGTCGCTCCAGATCCG 59.975 66.667 0.00 0.00 0.00 4.18
5227 8350 1.357334 GAGTCGTCGCTCCAGATCC 59.643 63.158 5.65 0.00 0.00 3.36
5234 8357 0.108804 TTCCAATGGAGTCGTCGCTC 60.109 55.000 0.86 7.80 31.21 5.03
5235 8358 0.108615 CTTCCAATGGAGTCGTCGCT 60.109 55.000 0.86 0.00 31.21 4.93
5236 8359 1.084370 CCTTCCAATGGAGTCGTCGC 61.084 60.000 0.86 0.00 31.21 5.19
5237 8360 1.084370 GCCTTCCAATGGAGTCGTCG 61.084 60.000 0.86 0.00 31.21 5.12
5238 8361 0.036388 TGCCTTCCAATGGAGTCGTC 60.036 55.000 0.86 0.00 31.21 4.20
5239 8362 0.321653 GTGCCTTCCAATGGAGTCGT 60.322 55.000 0.86 0.00 31.21 4.34
5240 8363 1.361668 CGTGCCTTCCAATGGAGTCG 61.362 60.000 0.86 1.12 31.21 4.18
5241 8364 1.026718 CCGTGCCTTCCAATGGAGTC 61.027 60.000 0.86 0.00 31.21 3.36
5242 8365 1.002134 CCGTGCCTTCCAATGGAGT 60.002 57.895 0.86 0.00 31.21 3.85
5243 8366 2.409870 GCCGTGCCTTCCAATGGAG 61.410 63.158 0.86 0.00 31.21 3.86
5244 8367 2.361104 GCCGTGCCTTCCAATGGA 60.361 61.111 0.00 0.00 0.00 3.41
5245 8368 3.451894 GGCCGTGCCTTCCAATGG 61.452 66.667 7.58 0.00 46.69 3.16
5256 8379 2.813908 GACTGTTAGCCGGCCGTG 60.814 66.667 26.15 16.79 0.00 4.94
5257 8380 4.430765 CGACTGTTAGCCGGCCGT 62.431 66.667 26.15 12.85 0.00 5.68
5258 8381 4.430765 ACGACTGTTAGCCGGCCG 62.431 66.667 26.15 21.04 0.00 6.13
5259 8382 2.813908 CACGACTGTTAGCCGGCC 60.814 66.667 26.15 8.84 0.00 6.13
5260 8383 3.488090 GCACGACTGTTAGCCGGC 61.488 66.667 21.89 21.89 0.00 6.13
5261 8384 2.094659 CAGCACGACTGTTAGCCGG 61.095 63.158 0.00 0.00 41.86 6.13
5262 8385 2.094659 CCAGCACGACTGTTAGCCG 61.095 63.158 8.90 0.00 45.68 5.52
5263 8386 1.004918 ACCAGCACGACTGTTAGCC 60.005 57.895 8.90 0.00 45.68 3.93
5264 8387 1.291877 CCACCAGCACGACTGTTAGC 61.292 60.000 8.90 0.00 45.68 3.09
5265 8388 0.033504 ACCACCAGCACGACTGTTAG 59.966 55.000 8.90 1.09 45.68 2.34
5266 8389 0.249699 CACCACCAGCACGACTGTTA 60.250 55.000 8.90 0.00 45.68 2.41
5267 8390 1.523711 CACCACCAGCACGACTGTT 60.524 57.895 8.90 0.00 45.68 3.16
5268 8391 2.108976 CACCACCAGCACGACTGT 59.891 61.111 8.90 0.00 45.68 3.55
5269 8392 2.666190 CCACCACCAGCACGACTG 60.666 66.667 0.00 0.00 46.77 3.51
5270 8393 2.842462 TCCACCACCAGCACGACT 60.842 61.111 0.00 0.00 0.00 4.18
5271 8394 2.665185 GTCCACCACCAGCACGAC 60.665 66.667 0.00 0.00 0.00 4.34
5272 8395 3.936203 GGTCCACCACCAGCACGA 61.936 66.667 0.00 0.00 45.98 4.35
5279 8402 2.430367 GACACTGGGTCCACCACC 59.570 66.667 0.00 0.00 46.80 4.61
5308 8431 3.385749 ATCACCGGATCACGCCACC 62.386 63.158 9.46 0.00 42.52 4.61
5309 8432 2.186903 ATCACCGGATCACGCCAC 59.813 61.111 9.46 0.00 42.52 5.01
5316 8439 2.237751 CGCCAACGATCACCGGATC 61.238 63.158 9.46 0.00 45.32 3.36
5317 8440 2.202878 CGCCAACGATCACCGGAT 60.203 61.111 9.46 0.00 43.93 4.18
5318 8441 4.444838 CCGCCAACGATCACCGGA 62.445 66.667 9.46 0.00 43.93 5.14
5321 8444 4.778143 AGGCCGCCAACGATCACC 62.778 66.667 13.15 0.00 43.93 4.02
5322 8445 3.499737 CAGGCCGCCAACGATCAC 61.500 66.667 13.15 0.00 43.93 3.06
5343 8466 4.147322 GATCGCGCACACCAACCG 62.147 66.667 8.75 0.00 0.00 4.44
5344 8467 2.742372 AGATCGCGCACACCAACC 60.742 61.111 8.75 0.00 0.00 3.77
5345 8468 2.476051 CAGATCGCGCACACCAAC 59.524 61.111 8.75 0.00 0.00 3.77
5346 8469 2.741985 CCAGATCGCGCACACCAA 60.742 61.111 8.75 0.00 0.00 3.67
5356 8479 3.798954 GAAGGGAGGCGCCAGATCG 62.799 68.421 31.54 0.00 38.95 3.69
5357 8480 2.110006 GAAGGGAGGCGCCAGATC 59.890 66.667 31.54 17.95 38.95 2.75
5358 8481 3.483869 GGAAGGGAGGCGCCAGAT 61.484 66.667 31.54 8.11 38.95 2.90
5359 8482 4.722535 AGGAAGGGAGGCGCCAGA 62.723 66.667 31.54 0.00 38.95 3.86
5360 8483 4.168291 GAGGAAGGGAGGCGCCAG 62.168 72.222 31.54 0.00 38.95 4.85
5364 8487 2.681273 ATAGGGGAGGAAGGGAGGCG 62.681 65.000 0.00 0.00 0.00 5.52
5365 8488 0.402126 AATAGGGGAGGAAGGGAGGC 60.402 60.000 0.00 0.00 0.00 4.70
5366 8489 1.735926 GAATAGGGGAGGAAGGGAGG 58.264 60.000 0.00 0.00 0.00 4.30
5367 8490 1.343069 CGAATAGGGGAGGAAGGGAG 58.657 60.000 0.00 0.00 0.00 4.30
5368 8491 0.105142 CCGAATAGGGGAGGAAGGGA 60.105 60.000 0.00 0.00 35.97 4.20
5369 8492 1.769716 GCCGAATAGGGGAGGAAGGG 61.770 65.000 0.00 0.00 41.48 3.95
5370 8493 1.755384 GCCGAATAGGGGAGGAAGG 59.245 63.158 0.00 0.00 41.48 3.46
5407 8530 3.804193 CAAGAAGAAGCGCGGCCC 61.804 66.667 8.83 0.00 0.00 5.80
5408 8531 3.804193 CCAAGAAGAAGCGCGGCC 61.804 66.667 8.83 0.00 0.00 6.13
5409 8532 3.028366 GACCAAGAAGAAGCGCGGC 62.028 63.158 8.83 0.00 0.00 6.53
5410 8533 2.730672 CGACCAAGAAGAAGCGCGG 61.731 63.158 8.83 0.00 0.00 6.46
5411 8534 2.772189 CGACCAAGAAGAAGCGCG 59.228 61.111 0.00 0.00 0.00 6.86
5412 8535 2.476499 GCGACCAAGAAGAAGCGC 59.524 61.111 0.00 0.00 37.60 5.92
5413 8536 2.730672 CGGCGACCAAGAAGAAGCG 61.731 63.158 0.00 0.00 0.00 4.68
5414 8537 2.391389 CCGGCGACCAAGAAGAAGC 61.391 63.158 9.30 0.00 0.00 3.86
5415 8538 0.602905 AACCGGCGACCAAGAAGAAG 60.603 55.000 9.30 0.00 0.00 2.85
5416 8539 0.601841 GAACCGGCGACCAAGAAGAA 60.602 55.000 9.30 0.00 0.00 2.52
5417 8540 1.005394 GAACCGGCGACCAAGAAGA 60.005 57.895 9.30 0.00 0.00 2.87
5418 8541 1.004918 AGAACCGGCGACCAAGAAG 60.005 57.895 9.30 0.00 0.00 2.85
5419 8542 1.301401 CAGAACCGGCGACCAAGAA 60.301 57.895 9.30 0.00 0.00 2.52
5420 8543 1.180456 TACAGAACCGGCGACCAAGA 61.180 55.000 9.30 0.00 0.00 3.02
5421 8544 1.012486 GTACAGAACCGGCGACCAAG 61.012 60.000 9.30 0.00 0.00 3.61
5422 8545 1.005867 GTACAGAACCGGCGACCAA 60.006 57.895 9.30 0.00 0.00 3.67
5423 8546 2.149803 CTGTACAGAACCGGCGACCA 62.150 60.000 18.45 0.00 0.00 4.02
5424 8547 1.445582 CTGTACAGAACCGGCGACC 60.446 63.158 18.45 0.00 0.00 4.79
5425 8548 1.445582 CCTGTACAGAACCGGCGAC 60.446 63.158 24.68 0.00 0.00 5.19
5426 8549 1.592400 CTCCTGTACAGAACCGGCGA 61.592 60.000 24.68 9.72 32.70 5.54
5427 8550 1.153823 CTCCTGTACAGAACCGGCG 60.154 63.158 24.68 0.00 32.70 6.46
5428 8551 1.218316 CCTCCTGTACAGAACCGGC 59.782 63.158 24.68 0.00 32.70 6.13
5429 8552 0.246635 CACCTCCTGTACAGAACCGG 59.753 60.000 24.68 18.35 33.90 5.28
5430 8553 0.389948 GCACCTCCTGTACAGAACCG 60.390 60.000 24.68 7.47 0.00 4.44
5431 8554 0.977395 AGCACCTCCTGTACAGAACC 59.023 55.000 24.68 6.19 0.00 3.62
5432 8555 1.941668 GCAGCACCTCCTGTACAGAAC 60.942 57.143 24.68 6.55 35.28 3.01
5433 8556 0.321671 GCAGCACCTCCTGTACAGAA 59.678 55.000 24.68 2.15 35.28 3.02
5434 8557 0.542938 AGCAGCACCTCCTGTACAGA 60.543 55.000 24.68 9.38 35.28 3.41
5435 8558 0.390866 CAGCAGCACCTCCTGTACAG 60.391 60.000 16.34 16.34 35.28 2.74
5436 8559 1.673477 CAGCAGCACCTCCTGTACA 59.327 57.895 0.00 0.00 35.28 2.90
5437 8560 1.078848 CCAGCAGCACCTCCTGTAC 60.079 63.158 0.00 0.00 35.28 2.90
5438 8561 1.536418 ACCAGCAGCACCTCCTGTA 60.536 57.895 0.00 0.00 35.28 2.74
5439 8562 2.851102 ACCAGCAGCACCTCCTGT 60.851 61.111 0.00 0.00 35.28 4.00
5440 8563 2.359602 CACCAGCAGCACCTCCTG 60.360 66.667 0.00 0.00 35.93 3.86
5441 8564 3.644606 CCACCAGCAGCACCTCCT 61.645 66.667 0.00 0.00 0.00 3.69
5448 8571 4.479993 ATCTCCGCCACCAGCAGC 62.480 66.667 0.00 0.00 44.04 5.25
5449 8572 1.395045 TAGATCTCCGCCACCAGCAG 61.395 60.000 0.00 0.00 44.04 4.24
5450 8573 1.381191 TAGATCTCCGCCACCAGCA 60.381 57.895 0.00 0.00 44.04 4.41
5451 8574 1.365633 CTAGATCTCCGCCACCAGC 59.634 63.158 0.00 0.00 38.52 4.85
5452 8575 1.067821 GAACTAGATCTCCGCCACCAG 59.932 57.143 0.00 0.00 0.00 4.00
5453 8576 1.112113 GAACTAGATCTCCGCCACCA 58.888 55.000 0.00 0.00 0.00 4.17
5454 8577 0.030908 CGAACTAGATCTCCGCCACC 59.969 60.000 0.00 0.00 0.00 4.61
5455 8578 0.030908 CCGAACTAGATCTCCGCCAC 59.969 60.000 0.00 0.00 0.00 5.01
5456 8579 1.107538 CCCGAACTAGATCTCCGCCA 61.108 60.000 0.00 0.00 0.00 5.69
5457 8580 1.660917 CCCGAACTAGATCTCCGCC 59.339 63.158 0.00 0.00 0.00 6.13
5458 8581 1.007154 GCCCGAACTAGATCTCCGC 60.007 63.158 0.00 0.00 0.00 5.54
5459 8582 1.107538 TGGCCCGAACTAGATCTCCG 61.108 60.000 0.00 0.00 0.00 4.63
5460 8583 1.120530 TTGGCCCGAACTAGATCTCC 58.879 55.000 0.00 0.00 0.00 3.71
5461 8584 2.981859 TTTGGCCCGAACTAGATCTC 57.018 50.000 0.00 0.00 0.00 2.75
5462 8585 2.104963 GGATTTGGCCCGAACTAGATCT 59.895 50.000 0.00 0.00 0.00 2.75
5463 8586 2.495084 GGATTTGGCCCGAACTAGATC 58.505 52.381 0.00 0.00 0.00 2.75
5464 8587 1.143073 GGGATTTGGCCCGAACTAGAT 59.857 52.381 0.00 0.00 38.58 1.98
5465 8588 0.544697 GGGATTTGGCCCGAACTAGA 59.455 55.000 0.00 0.00 38.58 2.43
5466 8589 3.095922 GGGATTTGGCCCGAACTAG 57.904 57.895 0.00 0.00 38.58 2.57
5494 8617 2.136196 CTAGATCTCCGCCACCGAGC 62.136 65.000 0.00 0.00 36.29 5.03
5495 8618 0.820074 ACTAGATCTCCGCCACCGAG 60.820 60.000 0.00 0.00 36.29 4.63
5496 8619 0.395311 AACTAGATCTCCGCCACCGA 60.395 55.000 0.00 0.00 36.29 4.69
5497 8620 0.030908 GAACTAGATCTCCGCCACCG 59.969 60.000 0.00 0.00 0.00 4.94
5498 8621 0.030908 CGAACTAGATCTCCGCCACC 59.969 60.000 0.00 0.00 0.00 4.61
5499 8622 0.030908 CCGAACTAGATCTCCGCCAC 59.969 60.000 0.00 0.00 0.00 5.01
5500 8623 1.107538 CCCGAACTAGATCTCCGCCA 61.108 60.000 0.00 0.00 0.00 5.69
5501 8624 1.660917 CCCGAACTAGATCTCCGCC 59.339 63.158 0.00 0.00 0.00 6.13
5502 8625 1.007154 GCCCGAACTAGATCTCCGC 60.007 63.158 0.00 0.00 0.00 5.54
5503 8626 1.164662 TCGCCCGAACTAGATCTCCG 61.165 60.000 0.00 0.00 0.00 4.63
5504 8627 1.030457 TTCGCCCGAACTAGATCTCC 58.970 55.000 0.00 0.00 0.00 3.71
5505 8628 2.865343 TTTCGCCCGAACTAGATCTC 57.135 50.000 0.00 0.00 33.41 2.75
5506 8629 2.036089 GGATTTCGCCCGAACTAGATCT 59.964 50.000 0.00 0.00 33.41 2.75
5507 8630 2.405172 GGATTTCGCCCGAACTAGATC 58.595 52.381 2.16 3.83 33.41 2.75
5508 8631 1.070289 GGGATTTCGCCCGAACTAGAT 59.930 52.381 2.16 0.00 38.58 1.98
5509 8632 0.462789 GGGATTTCGCCCGAACTAGA 59.537 55.000 2.16 0.00 38.58 2.43
5510 8633 2.987752 GGGATTTCGCCCGAACTAG 58.012 57.895 2.16 0.00 38.58 2.57
5521 8644 4.440829 TGGCCGGGCAGGGATTTC 62.441 66.667 29.27 0.58 41.48 2.17
5522 8645 4.759205 GTGGCCGGGCAGGGATTT 62.759 66.667 33.64 0.00 41.48 2.17
5562 8685 2.044555 GGAAACGGCACCCTTAGGC 61.045 63.158 0.00 0.00 36.11 3.93
5563 8686 1.378119 GGGAAACGGCACCCTTAGG 60.378 63.158 0.00 0.00 42.56 2.69
5564 8687 4.313819 GGGAAACGGCACCCTTAG 57.686 61.111 0.00 0.00 42.56 2.18
5568 8691 1.228459 AAAGAGGGAAACGGCACCC 60.228 57.895 0.00 0.00 45.88 4.61
5569 8692 1.524008 CCAAAGAGGGAAACGGCACC 61.524 60.000 0.00 0.00 0.00 5.01
5570 8693 0.536460 TCCAAAGAGGGAAACGGCAC 60.536 55.000 0.00 0.00 38.24 5.01
5571 8694 0.250727 CTCCAAAGAGGGAAACGGCA 60.251 55.000 0.00 0.00 36.27 5.69
5572 8695 2.556286 CTCCAAAGAGGGAAACGGC 58.444 57.895 0.00 0.00 36.27 5.68
5581 8704 0.460311 ATACCGACGCCTCCAAAGAG 59.540 55.000 0.00 0.00 40.09 2.85
5582 8705 0.174845 CATACCGACGCCTCCAAAGA 59.825 55.000 0.00 0.00 0.00 2.52
5583 8706 2.677971 CATACCGACGCCTCCAAAG 58.322 57.895 0.00 0.00 0.00 2.77
5584 8707 4.924019 CATACCGACGCCTCCAAA 57.076 55.556 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.