Multiple sequence alignment - TraesCS5B01G126500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G126500 chr5B 100.000 3000 0 0 2205 5204 230882919 230879920 0.000000e+00 5541.0
1 TraesCS5B01G126500 chr5B 100.000 2014 0 0 1 2014 230885123 230883110 0.000000e+00 3720.0
2 TraesCS5B01G126500 chr5B 91.237 776 48 14 13 785 120308393 120307635 0.000000e+00 1038.0
3 TraesCS5B01G126500 chr5B 86.415 265 35 1 4941 5204 230859860 230859596 6.590000e-74 289.0
4 TraesCS5B01G126500 chr5B 91.489 141 9 2 2214 2353 98663317 98663179 1.910000e-44 191.0
5 TraesCS5B01G126500 chr5A 95.491 2018 84 6 2863 4874 283308273 283306257 0.000000e+00 3216.0
6 TraesCS5B01G126500 chr5A 91.758 1092 61 12 931 2009 283309860 283308785 0.000000e+00 1491.0
7 TraesCS5B01G126500 chr5A 90.970 299 18 5 2214 2506 283308690 283308395 1.360000e-105 394.0
8 TraesCS5B01G126500 chr5A 99.180 122 1 0 792 913 415160893 415160772 2.440000e-53 220.0
9 TraesCS5B01G126500 chr5A 98.333 120 2 0 792 911 43392168 43392287 1.470000e-50 211.0
10 TraesCS5B01G126500 chr5A 91.549 142 7 4 2214 2353 86662158 86662020 1.910000e-44 191.0
11 TraesCS5B01G126500 chr5A 91.818 110 9 0 2642 2751 283308388 283308279 2.510000e-33 154.0
12 TraesCS5B01G126500 chr5A 92.105 38 3 0 1581 1618 688116125 688116088 3.000000e-03 54.7
13 TraesCS5B01G126500 chr5D 95.789 1330 53 2 3548 4874 215300803 215299474 0.000000e+00 2143.0
14 TraesCS5B01G126500 chr5D 97.581 1116 17 5 906 2014 215303330 215302218 0.000000e+00 1903.0
15 TraesCS5B01G126500 chr5D 98.164 708 13 0 2795 3502 215301525 215300818 0.000000e+00 1236.0
16 TraesCS5B01G126500 chr5D 87.523 537 45 15 267 784 130454014 130453481 7.460000e-168 601.0
17 TraesCS5B01G126500 chr5D 97.619 294 7 0 2214 2507 215302124 215301831 6.010000e-139 505.0
18 TraesCS5B01G126500 chr5D 94.286 175 9 1 2642 2816 215301825 215301652 3.090000e-67 267.0
19 TraesCS5B01G126500 chr5D 89.076 119 11 2 2507 2623 538654837 538654955 4.200000e-31 147.0
20 TraesCS5B01G126500 chr7A 93.540 774 26 4 13 785 730506851 730506101 0.000000e+00 1131.0
21 TraesCS5B01G126500 chr7A 82.836 536 64 14 3085 3612 694355153 694355668 6.140000e-124 455.0
22 TraesCS5B01G126500 chr7A 99.167 120 1 0 792 911 537514650 537514531 3.160000e-52 217.0
23 TraesCS5B01G126500 chr2B 91.506 777 43 12 13 785 592559296 592558539 0.000000e+00 1048.0
24 TraesCS5B01G126500 chr2B 89.615 520 42 11 13 525 202599149 202599663 0.000000e+00 651.0
25 TraesCS5B01G126500 chr2B 87.156 218 23 5 4943 5158 328917859 328917645 5.210000e-60 243.0
26 TraesCS5B01G126500 chr1B 91.131 778 48 15 13 787 185068715 185069474 0.000000e+00 1035.0
27 TraesCS5B01G126500 chr1B 93.911 542 28 4 13 550 465360650 465361190 0.000000e+00 813.0
28 TraesCS5B01G126500 chr6B 90.593 776 37 14 13 785 220572762 220573504 0.000000e+00 996.0
29 TraesCS5B01G126500 chr6B 88.544 515 43 14 20 525 692451289 692451796 1.240000e-170 610.0
30 TraesCS5B01G126500 chr6B 95.455 132 5 1 1606 1737 537553974 537553844 5.280000e-50 209.0
31 TraesCS5B01G126500 chr6B 95.868 121 5 0 792 912 135412220 135412100 4.110000e-46 196.0
32 TraesCS5B01G126500 chr6B 87.730 163 12 4 1579 1740 29261651 29261496 3.200000e-42 183.0
33 TraesCS5B01G126500 chrUn 88.911 514 44 11 19 525 88158514 88158007 5.720000e-174 621.0
34 TraesCS5B01G126500 chr7B 82.126 649 92 15 2860 3490 425265469 425264827 7.670000e-148 534.0
35 TraesCS5B01G126500 chr7B 84.000 500 68 11 3085 3582 683228443 683228932 2.190000e-128 470.0
36 TraesCS5B01G126500 chr7B 89.015 264 25 2 4941 5203 177486676 177486416 1.810000e-84 324.0
37 TraesCS5B01G126500 chr7B 95.276 127 6 0 786 912 157041099 157041225 8.840000e-48 202.0
38 TraesCS5B01G126500 chr7B 90.667 150 9 2 1580 1729 229095562 229095706 1.480000e-45 195.0
39 TraesCS5B01G126500 chr7B 90.411 146 11 2 2214 2358 155471306 155471163 6.880000e-44 189.0
40 TraesCS5B01G126500 chr7D 88.967 426 31 11 371 785 49798125 49797705 3.590000e-141 512.0
41 TraesCS5B01G126500 chr7D 91.429 140 9 2 2214 2352 156796978 156796841 6.880000e-44 189.0
42 TraesCS5B01G126500 chr2A 81.538 650 94 17 2860 3490 406497897 406497255 3.590000e-141 512.0
43 TraesCS5B01G126500 chr2A 81.385 650 95 16 2860 3490 394707078 394707720 1.670000e-139 507.0
44 TraesCS5B01G126500 chr2A 91.429 140 9 2 2214 2353 329688159 329688023 6.880000e-44 189.0
45 TraesCS5B01G126500 chr2A 87.395 119 10 2 2751 2864 4211726 4211844 1.180000e-26 132.0
46 TraesCS5B01G126500 chr2A 85.833 120 12 3 2750 2864 416923055 416922936 7.080000e-24 122.0
47 TraesCS5B01G126500 chr4A 85.339 457 40 16 332 782 739601827 739602262 1.030000e-121 448.0
48 TraesCS5B01G126500 chr4A 83.266 496 57 18 297 785 743546840 743546364 2.880000e-117 433.0
49 TraesCS5B01G126500 chr6D 97.619 126 3 0 786 911 75024770 75024895 3.160000e-52 217.0
50 TraesCS5B01G126500 chr6D 92.647 136 7 2 2214 2348 386931629 386931496 5.320000e-45 193.0
51 TraesCS5B01G126500 chr3A 96.825 126 4 0 786 911 617007125 617007250 1.470000e-50 211.0
52 TraesCS5B01G126500 chr4B 93.525 139 7 2 1606 1743 146469349 146469212 6.830000e-49 206.0
53 TraesCS5B01G126500 chr4B 87.500 112 12 2 2751 2861 659672204 659672314 1.520000e-25 128.0
54 TraesCS5B01G126500 chr4B 85.714 112 15 1 2751 2862 646978862 646978752 3.290000e-22 117.0
55 TraesCS5B01G126500 chr6A 97.500 120 2 1 792 911 278574804 278574686 2.460000e-48 204.0
56 TraesCS5B01G126500 chr6A 95.276 127 6 0 786 912 416544010 416544136 8.840000e-48 202.0
57 TraesCS5B01G126500 chr6A 87.805 164 11 5 1579 1740 17378068 17377912 3.200000e-42 183.0
58 TraesCS5B01G126500 chr2D 92.806 139 7 3 1606 1743 79056300 79056164 1.140000e-46 198.0
59 TraesCS5B01G126500 chr2D 87.654 162 14 5 2208 2366 79056314 79056156 3.200000e-42 183.0
60 TraesCS5B01G126500 chr2D 90.083 121 12 0 2746 2866 5773102 5773222 1.940000e-34 158.0
61 TraesCS5B01G126500 chr1D 91.608 143 8 4 1606 1747 7349723 7349862 1.480000e-45 195.0
62 TraesCS5B01G126500 chr3B 90.625 96 9 0 2768 2863 761883160 761883065 1.520000e-25 128.0
63 TraesCS5B01G126500 chr3B 84.426 122 13 4 2742 2862 637088488 637088604 1.180000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G126500 chr5B 230879920 230885123 5203 True 4630.50 5541 100.00000 1 5204 2 chr5B.!!$R4 5203
1 TraesCS5B01G126500 chr5B 120307635 120308393 758 True 1038.00 1038 91.23700 13 785 1 chr5B.!!$R2 772
2 TraesCS5B01G126500 chr5A 283306257 283309860 3603 True 1313.75 3216 92.50925 931 4874 4 chr5A.!!$R4 3943
3 TraesCS5B01G126500 chr5D 215299474 215303330 3856 True 1210.80 2143 96.68780 906 4874 5 chr5D.!!$R2 3968
4 TraesCS5B01G126500 chr5D 130453481 130454014 533 True 601.00 601 87.52300 267 784 1 chr5D.!!$R1 517
5 TraesCS5B01G126500 chr7A 730506101 730506851 750 True 1131.00 1131 93.54000 13 785 1 chr7A.!!$R2 772
6 TraesCS5B01G126500 chr7A 694355153 694355668 515 False 455.00 455 82.83600 3085 3612 1 chr7A.!!$F1 527
7 TraesCS5B01G126500 chr2B 592558539 592559296 757 True 1048.00 1048 91.50600 13 785 1 chr2B.!!$R2 772
8 TraesCS5B01G126500 chr2B 202599149 202599663 514 False 651.00 651 89.61500 13 525 1 chr2B.!!$F1 512
9 TraesCS5B01G126500 chr1B 185068715 185069474 759 False 1035.00 1035 91.13100 13 787 1 chr1B.!!$F1 774
10 TraesCS5B01G126500 chr1B 465360650 465361190 540 False 813.00 813 93.91100 13 550 1 chr1B.!!$F2 537
11 TraesCS5B01G126500 chr6B 220572762 220573504 742 False 996.00 996 90.59300 13 785 1 chr6B.!!$F1 772
12 TraesCS5B01G126500 chr6B 692451289 692451796 507 False 610.00 610 88.54400 20 525 1 chr6B.!!$F2 505
13 TraesCS5B01G126500 chrUn 88158007 88158514 507 True 621.00 621 88.91100 19 525 1 chrUn.!!$R1 506
14 TraesCS5B01G126500 chr7B 425264827 425265469 642 True 534.00 534 82.12600 2860 3490 1 chr7B.!!$R3 630
15 TraesCS5B01G126500 chr2A 406497255 406497897 642 True 512.00 512 81.53800 2860 3490 1 chr2A.!!$R2 630
16 TraesCS5B01G126500 chr2A 394707078 394707720 642 False 507.00 507 81.38500 2860 3490 1 chr2A.!!$F2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 830 0.891373 ATCTATCGATGGAGTGGGCG 59.109 55.0 16.93 0.0 0.00 6.13 F
2550 2602 0.175760 ATCCTGTCGATCCAACCACG 59.824 55.0 0.00 0.0 0.00 4.94 F
2564 2616 0.245266 ACCACGCATGTGTATGACGA 59.755 50.0 12.39 0.0 44.92 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2632 2684 0.036765 ATGGTAAAACTGCGAGCGGA 60.037 50.000 11.27 0.0 0.0 5.54 R
4188 4413 1.527311 GCGTGTCACTGGAACTTTCTC 59.473 52.381 0.65 0.0 0.0 2.87 R
4562 4789 2.509336 AGCGCGTACTGGCATGAC 60.509 61.111 8.43 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
662 685 1.318576 AAAACGGCTGGGAAACTCTG 58.681 50.000 0.00 0.00 0.00 3.35
787 813 6.402222 AGAGCGTCAAATAGGATATTCCATC 58.598 40.000 0.00 0.00 39.61 3.51
788 814 6.212388 AGAGCGTCAAATAGGATATTCCATCT 59.788 38.462 0.00 0.00 39.61 2.90
789 815 7.397476 AGAGCGTCAAATAGGATATTCCATCTA 59.603 37.037 0.00 0.00 39.61 1.98
790 816 8.083828 AGCGTCAAATAGGATATTCCATCTAT 57.916 34.615 0.00 0.00 39.61 1.98
791 817 8.200792 AGCGTCAAATAGGATATTCCATCTATC 58.799 37.037 0.00 0.00 39.61 2.08
792 818 7.168302 GCGTCAAATAGGATATTCCATCTATCG 59.832 40.741 0.00 0.00 39.61 2.92
793 819 8.406297 CGTCAAATAGGATATTCCATCTATCGA 58.594 37.037 0.00 0.00 39.61 3.59
803 829 2.376808 CATCTATCGATGGAGTGGGC 57.623 55.000 16.93 0.00 42.66 5.36
804 830 0.891373 ATCTATCGATGGAGTGGGCG 59.109 55.000 16.93 0.00 0.00 6.13
805 831 1.179174 TCTATCGATGGAGTGGGCGG 61.179 60.000 7.46 0.00 0.00 6.13
806 832 2.771763 CTATCGATGGAGTGGGCGGC 62.772 65.000 8.54 0.00 0.00 6.53
808 834 3.536917 CGATGGAGTGGGCGGCTA 61.537 66.667 9.56 0.00 0.00 3.93
809 835 2.423446 GATGGAGTGGGCGGCTAG 59.577 66.667 9.56 0.00 0.00 3.42
853 879 4.462280 GGCCAAGCCCATGCAAGC 62.462 66.667 0.00 0.00 44.06 4.01
854 880 4.807039 GCCAAGCCCATGCAAGCG 62.807 66.667 0.00 0.00 41.13 4.68
855 881 3.063704 CCAAGCCCATGCAAGCGA 61.064 61.111 0.00 0.00 41.13 4.93
856 882 2.180017 CAAGCCCATGCAAGCGAC 59.820 61.111 0.00 0.00 41.13 5.19
857 883 3.434319 AAGCCCATGCAAGCGACG 61.434 61.111 0.00 0.00 41.13 5.12
860 886 4.170062 CCCATGCAAGCGACGCAG 62.170 66.667 23.70 15.06 43.88 5.18
861 887 4.824166 CCATGCAAGCGACGCAGC 62.824 66.667 23.70 24.19 43.88 5.25
1589 1633 1.195115 GCTGTGACATACTCCCTCCA 58.805 55.000 0.00 0.00 0.00 3.86
1680 1724 5.049612 TGAACAAACACACTAAAACGTGTCA 60.050 36.000 0.00 0.00 45.74 3.58
1796 1841 3.743899 GCACCAAGAGGCAAATTTGGAAA 60.744 43.478 19.47 0.00 43.15 3.13
1949 1994 6.150140 CCCTTGAGTTTATGGACAGAAGAAAG 59.850 42.308 0.00 0.00 0.00 2.62
1953 1998 6.423905 TGAGTTTATGGACAGAAGAAAGAACG 59.576 38.462 0.00 0.00 0.00 3.95
1958 2004 2.994578 GGACAGAAGAAAGAACGCCTAC 59.005 50.000 0.00 0.00 0.00 3.18
1959 2005 3.306156 GGACAGAAGAAAGAACGCCTACT 60.306 47.826 0.00 0.00 0.00 2.57
1972 2018 2.683867 ACGCCTACTGTACAGACATCTC 59.316 50.000 29.30 11.21 34.24 2.75
1996 2042 6.645415 TCGTCTTTTTCAGTAGAACCTGATTC 59.355 38.462 0.00 0.00 40.96 2.52
2273 2319 2.540515 ACATACGGACTGAAATGAGCG 58.459 47.619 7.93 0.00 0.00 5.03
2489 2541 5.106317 GCATGAATTTCAACTTTAGGGTCGA 60.106 40.000 2.68 0.00 0.00 4.20
2509 2561 9.285770 GGGTCGACAATTCTTTAATTTATTCAC 57.714 33.333 18.91 0.00 32.87 3.18
2515 2567 9.979578 ACAATTCTTTAATTTATTCACTGTGCA 57.020 25.926 2.12 0.00 32.87 4.57
2517 2569 8.693542 ATTCTTTAATTTATTCACTGTGCAGC 57.306 30.769 2.12 0.00 0.00 5.25
2518 2570 6.620678 TCTTTAATTTATTCACTGTGCAGCC 58.379 36.000 2.12 0.00 0.00 4.85
2519 2571 5.973899 TTAATTTATTCACTGTGCAGCCA 57.026 34.783 2.12 0.00 0.00 4.75
2520 2572 4.870123 AATTTATTCACTGTGCAGCCAA 57.130 36.364 2.12 0.00 0.00 4.52
2521 2573 5.410355 AATTTATTCACTGTGCAGCCAAT 57.590 34.783 2.12 0.07 0.00 3.16
2522 2574 4.870123 TTTATTCACTGTGCAGCCAATT 57.130 36.364 2.12 0.00 0.00 2.32
2523 2575 2.736144 ATTCACTGTGCAGCCAATTG 57.264 45.000 2.12 0.00 0.00 2.32
2524 2576 1.401761 TTCACTGTGCAGCCAATTGT 58.598 45.000 4.43 0.00 0.00 2.71
2525 2577 1.401761 TCACTGTGCAGCCAATTGTT 58.598 45.000 4.43 0.00 0.00 2.83
2526 2578 1.067364 TCACTGTGCAGCCAATTGTTG 59.933 47.619 4.43 3.89 0.00 3.33
2527 2579 0.249573 ACTGTGCAGCCAATTGTTGC 60.250 50.000 19.66 19.66 38.30 4.17
2528 2580 0.249531 CTGTGCAGCCAATTGTTGCA 60.250 50.000 23.28 23.28 44.81 4.08
2529 2581 4.754570 TGCAGCCAATTGTTGCAC 57.245 50.000 23.28 10.33 42.41 4.57
2530 2582 1.300003 TGCAGCCAATTGTTGCACG 60.300 52.632 23.28 9.98 42.41 5.34
2531 2583 1.007502 GCAGCCAATTGTTGCACGA 60.008 52.632 20.88 0.00 37.75 4.35
2532 2584 0.388907 GCAGCCAATTGTTGCACGAT 60.389 50.000 20.88 0.00 37.75 3.73
2533 2585 1.621107 CAGCCAATTGTTGCACGATC 58.379 50.000 4.43 0.00 0.00 3.69
2534 2586 0.527565 AGCCAATTGTTGCACGATCC 59.472 50.000 4.43 0.00 0.00 3.36
2535 2587 0.527565 GCCAATTGTTGCACGATCCT 59.472 50.000 4.43 0.00 0.00 3.24
2536 2588 1.733389 GCCAATTGTTGCACGATCCTG 60.733 52.381 4.43 0.00 0.00 3.86
2537 2589 1.541147 CCAATTGTTGCACGATCCTGT 59.459 47.619 4.43 0.00 0.00 4.00
2538 2590 2.414559 CCAATTGTTGCACGATCCTGTC 60.415 50.000 4.43 0.00 0.00 3.51
2549 2601 1.941325 GATCCTGTCGATCCAACCAC 58.059 55.000 0.00 0.00 41.51 4.16
2550 2602 0.175760 ATCCTGTCGATCCAACCACG 59.824 55.000 0.00 0.00 0.00 4.94
2551 2603 2.100631 CCTGTCGATCCAACCACGC 61.101 63.158 0.00 0.00 0.00 5.34
2552 2604 1.374125 CTGTCGATCCAACCACGCA 60.374 57.895 0.00 0.00 0.00 5.24
2553 2605 0.740868 CTGTCGATCCAACCACGCAT 60.741 55.000 0.00 0.00 0.00 4.73
2554 2606 1.018752 TGTCGATCCAACCACGCATG 61.019 55.000 0.00 0.00 0.00 4.06
2555 2607 1.019278 GTCGATCCAACCACGCATGT 61.019 55.000 0.00 0.00 0.00 3.21
2556 2608 1.018752 TCGATCCAACCACGCATGTG 61.019 55.000 4.30 4.30 46.00 3.21
2557 2609 1.298157 CGATCCAACCACGCATGTGT 61.298 55.000 5.96 5.96 44.92 3.72
2558 2610 1.732941 GATCCAACCACGCATGTGTA 58.267 50.000 12.39 0.00 44.92 2.90
2559 2611 2.288666 GATCCAACCACGCATGTGTAT 58.711 47.619 12.39 0.20 44.92 2.29
2560 2612 1.447945 TCCAACCACGCATGTGTATG 58.552 50.000 12.39 11.19 44.92 2.39
2561 2613 1.002544 TCCAACCACGCATGTGTATGA 59.997 47.619 12.39 1.83 44.92 2.15
2562 2614 1.130373 CCAACCACGCATGTGTATGAC 59.870 52.381 12.39 0.00 44.92 3.06
2563 2615 1.075542 AACCACGCATGTGTATGACG 58.924 50.000 12.39 0.00 44.92 4.35
2564 2616 0.245266 ACCACGCATGTGTATGACGA 59.755 50.000 12.39 0.00 44.92 4.20
2565 2617 1.337354 ACCACGCATGTGTATGACGAA 60.337 47.619 12.39 0.00 44.92 3.85
2566 2618 1.324435 CCACGCATGTGTATGACGAAG 59.676 52.381 12.39 0.00 44.92 3.79
2567 2619 1.992667 CACGCATGTGTATGACGAAGT 59.007 47.619 12.39 0.00 42.86 3.01
2568 2620 2.222574 CACGCATGTGTATGACGAAGTG 60.223 50.000 12.39 0.00 40.94 3.16
2569 2621 5.291231 CACGCATGTGTATGACGAAGTGG 62.291 52.174 12.39 0.00 40.94 4.00
2588 2640 2.408271 GAGCACATCCACAGGATCAA 57.592 50.000 0.00 0.00 40.98 2.57
2589 2641 2.286872 GAGCACATCCACAGGATCAAG 58.713 52.381 0.00 0.00 40.98 3.02
2590 2642 1.632409 AGCACATCCACAGGATCAAGT 59.368 47.619 0.00 0.00 40.98 3.16
2591 2643 2.840038 AGCACATCCACAGGATCAAGTA 59.160 45.455 0.00 0.00 40.98 2.24
2592 2644 3.457380 AGCACATCCACAGGATCAAGTAT 59.543 43.478 0.00 0.00 40.98 2.12
2593 2645 4.080129 AGCACATCCACAGGATCAAGTATT 60.080 41.667 0.00 0.00 40.98 1.89
2594 2646 4.036027 GCACATCCACAGGATCAAGTATTG 59.964 45.833 0.00 0.00 40.98 1.90
2595 2647 4.036027 CACATCCACAGGATCAAGTATTGC 59.964 45.833 0.00 0.00 40.98 3.56
2596 2648 3.567164 CATCCACAGGATCAAGTATTGCC 59.433 47.826 0.00 0.00 40.98 4.52
2597 2649 3.202818 ATCCACAGGATCAAGTATTGCCA 59.797 43.478 0.00 0.00 38.09 4.92
2598 2650 4.325265 ATCCACAGGATCAAGTATTGCCAA 60.325 41.667 0.00 0.00 38.09 4.52
2599 2651 6.384323 ATCCACAGGATCAAGTATTGCCAAC 61.384 44.000 0.00 0.00 38.09 3.77
2604 2656 3.967734 CAAGTATTGCCAACGGTCG 57.032 52.632 0.00 0.00 40.39 4.79
2605 2657 1.153353 CAAGTATTGCCAACGGTCGT 58.847 50.000 0.00 0.00 40.39 4.34
2606 2658 1.136085 CAAGTATTGCCAACGGTCGTG 60.136 52.381 0.00 0.00 40.39 4.35
2607 2659 1.133869 GTATTGCCAACGGTCGTGC 59.866 57.895 0.00 0.00 0.00 5.34
2608 2660 1.301795 TATTGCCAACGGTCGTGCA 60.302 52.632 4.74 4.74 0.00 4.57
2609 2661 1.570347 TATTGCCAACGGTCGTGCAC 61.570 55.000 6.82 6.82 32.63 4.57
2610 2662 3.901666 TATTGCCAACGGTCGTGCACT 62.902 52.381 16.19 6.11 32.63 4.40
2611 2663 2.356553 GCCAACGGTCGTGCACTA 60.357 61.111 16.19 0.00 0.00 2.74
2612 2664 1.957186 GCCAACGGTCGTGCACTAA 60.957 57.895 16.19 0.00 0.00 2.24
2613 2665 1.897398 GCCAACGGTCGTGCACTAAG 61.897 60.000 16.19 6.12 0.00 2.18
2614 2666 0.599204 CCAACGGTCGTGCACTAAGT 60.599 55.000 16.19 6.78 0.00 2.24
2615 2667 1.336148 CCAACGGTCGTGCACTAAGTA 60.336 52.381 16.19 0.00 0.00 2.24
2616 2668 2.602878 CAACGGTCGTGCACTAAGTAT 58.397 47.619 16.19 0.00 0.00 2.12
2617 2669 2.556534 ACGGTCGTGCACTAAGTATC 57.443 50.000 16.19 0.00 0.00 2.24
2618 2670 1.202110 ACGGTCGTGCACTAAGTATCG 60.202 52.381 16.19 9.35 0.00 2.92
2619 2671 1.202110 CGGTCGTGCACTAAGTATCGT 60.202 52.381 16.19 0.00 0.00 3.73
2620 2672 2.182825 GGTCGTGCACTAAGTATCGTG 58.817 52.381 16.19 0.00 0.00 4.35
2621 2673 2.415090 GGTCGTGCACTAAGTATCGTGT 60.415 50.000 16.19 0.00 33.78 4.49
2622 2674 2.592897 GTCGTGCACTAAGTATCGTGTG 59.407 50.000 16.19 0.00 33.78 3.82
2628 2680 3.991069 CACTAAGTATCGTGTGCAAAGC 58.009 45.455 0.00 0.00 0.00 3.51
2629 2681 3.431912 CACTAAGTATCGTGTGCAAAGCA 59.568 43.478 0.00 0.00 35.60 3.91
2630 2682 3.679980 ACTAAGTATCGTGTGCAAAGCAG 59.320 43.478 0.00 0.00 40.08 4.24
2631 2683 2.169832 AGTATCGTGTGCAAAGCAGT 57.830 45.000 0.00 0.00 40.08 4.40
2632 2684 2.494059 AGTATCGTGTGCAAAGCAGTT 58.506 42.857 0.00 0.00 40.08 3.16
2633 2685 2.480419 AGTATCGTGTGCAAAGCAGTTC 59.520 45.455 0.00 0.00 40.08 3.01
2634 2686 0.593128 ATCGTGTGCAAAGCAGTTCC 59.407 50.000 0.00 0.00 40.08 3.62
2635 2687 1.369209 CGTGTGCAAAGCAGTTCCG 60.369 57.895 0.00 0.00 40.08 4.30
2636 2688 1.658409 GTGTGCAAAGCAGTTCCGC 60.658 57.895 0.00 0.00 40.08 5.54
2637 2689 1.823470 TGTGCAAAGCAGTTCCGCT 60.823 52.632 0.00 0.00 46.67 5.52
2638 2690 1.081840 GTGCAAAGCAGTTCCGCTC 60.082 57.895 0.00 0.00 42.89 5.03
2639 2691 2.174349 GCAAAGCAGTTCCGCTCG 59.826 61.111 0.00 0.00 42.89 5.03
2640 2692 2.174349 CAAAGCAGTTCCGCTCGC 59.826 61.111 0.00 0.00 42.89 5.03
2664 2716 8.957028 CGCAGTTTTACCATGTTCAATATTATG 58.043 33.333 0.00 0.00 0.00 1.90
2665 2717 9.801873 GCAGTTTTACCATGTTCAATATTATGT 57.198 29.630 0.00 0.00 0.00 2.29
2683 2735 3.140325 TGTCCCAATTGTCAAGTCCTC 57.860 47.619 4.43 0.00 0.00 3.71
2712 2764 2.101783 TGGTAATGCTGCTTTCCATGG 58.898 47.619 4.97 4.97 0.00 3.66
2769 2821 8.712285 TTATTACCTTCGTCCTGAATTAGTTG 57.288 34.615 0.00 0.00 35.63 3.16
3117 3334 7.755373 TCAGTACACTATGAACTTCAAATCTCG 59.245 37.037 0.00 0.00 0.00 4.04
3310 3529 6.916360 ACCTTTCTAAATGGAAATGCTCAA 57.084 33.333 0.00 0.00 35.12 3.02
3315 3534 8.954950 TTTCTAAATGGAAATGCTCAAAACAA 57.045 26.923 0.00 0.00 31.29 2.83
3451 3671 5.277825 CCAAGAAAGCTGATAGTCTCTACG 58.722 45.833 0.00 0.00 0.00 3.51
3628 3852 7.540400 TCAACCAAGTTTGAATATGTTTATGCG 59.460 33.333 0.00 0.00 32.42 4.73
3788 4012 5.297278 TGCATACGACTGTTTTTAAAGGTGT 59.703 36.000 0.00 0.00 0.00 4.16
3789 4013 5.849604 GCATACGACTGTTTTTAAAGGTGTC 59.150 40.000 0.00 0.00 0.00 3.67
3936 4161 6.708949 GGAGTTGAAGTCACATGGTAAGTTTA 59.291 38.462 2.06 0.00 0.00 2.01
3963 4188 2.117156 CCCTTATGCTGCTGCGCTT 61.117 57.895 9.73 12.02 43.34 4.68
4032 4257 4.404073 GTGATCACTTGTAGGGAGTCTGAT 59.596 45.833 18.83 0.00 26.79 2.90
4188 4413 2.225348 TCGCAAACTCGAGCTTGTG 58.775 52.632 27.98 27.98 34.11 3.33
4238 4463 3.194329 CAGTGGCACTGTCAGATTAGAGA 59.806 47.826 34.00 0.00 41.19 3.10
4366 4591 9.651913 GATCAGATAGTTCCTTAATCAATCCTC 57.348 37.037 0.00 0.00 0.00 3.71
4556 4783 1.151668 CATAGCGTTCATAGCCAGGC 58.848 55.000 1.84 1.84 34.64 4.85
4562 4789 1.595109 TTCATAGCCAGGCGCATCG 60.595 57.895 10.83 0.00 41.38 3.84
4628 4855 4.991056 CAGAGTTACAAGCTCTACTGCAAA 59.009 41.667 0.00 0.00 40.97 3.68
4747 4975 4.881920 ACACGAATTGGCTTGCTTTTAAT 58.118 34.783 0.00 0.00 0.00 1.40
4758 4986 8.292444 TGGCTTGCTTTTAATGAGTGTAATAT 57.708 30.769 0.00 0.00 0.00 1.28
4829 5057 2.476619 CTGCCTGTCTTTTGTGTAGTCG 59.523 50.000 0.00 0.00 0.00 4.18
4868 5096 2.109799 CTGGCAGGGGCTCGTATG 59.890 66.667 6.61 0.00 40.87 2.39
4874 5102 1.077716 AGGGGCTCGTATGTTTGCC 60.078 57.895 0.00 0.00 44.22 4.52
4876 5104 3.509659 GGCTCGTATGTTTGCCCC 58.490 61.111 0.00 0.00 39.49 5.80
4877 5105 1.077716 GGCTCGTATGTTTGCCCCT 60.078 57.895 0.00 0.00 39.49 4.79
4878 5106 1.376609 GGCTCGTATGTTTGCCCCTG 61.377 60.000 0.00 0.00 39.49 4.45
4879 5107 1.993369 GCTCGTATGTTTGCCCCTGC 61.993 60.000 0.00 0.00 38.26 4.85
4880 5108 1.376609 CTCGTATGTTTGCCCCTGCC 61.377 60.000 0.00 0.00 36.33 4.85
4881 5109 1.677300 CGTATGTTTGCCCCTGCCA 60.677 57.895 0.00 0.00 36.33 4.92
4882 5110 1.037030 CGTATGTTTGCCCCTGCCAT 61.037 55.000 0.00 0.00 36.33 4.40
4883 5111 0.461135 GTATGTTTGCCCCTGCCATG 59.539 55.000 0.00 0.00 36.33 3.66
4884 5112 0.687098 TATGTTTGCCCCTGCCATGG 60.687 55.000 7.63 7.63 36.33 3.66
4885 5113 2.283821 GTTTGCCCCTGCCATGGA 60.284 61.111 18.40 0.00 36.33 3.41
4886 5114 1.912763 GTTTGCCCCTGCCATGGAA 60.913 57.895 18.40 3.09 36.33 3.53
4887 5115 1.610086 TTTGCCCCTGCCATGGAAG 60.610 57.895 18.40 15.86 36.33 3.46
4888 5116 2.091640 TTTGCCCCTGCCATGGAAGA 62.092 55.000 22.70 0.00 36.33 2.87
4889 5117 2.091640 TTGCCCCTGCCATGGAAGAA 62.092 55.000 22.70 4.23 36.33 2.52
4890 5118 2.054453 GCCCCTGCCATGGAAGAAC 61.054 63.158 22.70 6.08 0.00 3.01
4891 5119 1.380380 CCCCTGCCATGGAAGAACC 60.380 63.158 22.70 0.00 39.54 3.62
4892 5120 1.380380 CCCTGCCATGGAAGAACCC 60.380 63.158 22.70 0.00 38.00 4.11
4893 5121 1.693640 CCTGCCATGGAAGAACCCT 59.306 57.895 22.70 0.00 38.00 4.34
4894 5122 0.682209 CCTGCCATGGAAGAACCCTG 60.682 60.000 22.70 0.00 38.00 4.45
4895 5123 1.304381 TGCCATGGAAGAACCCTGC 60.304 57.895 18.40 0.00 38.00 4.85
4896 5124 2.054453 GCCATGGAAGAACCCTGCC 61.054 63.158 18.40 0.00 38.72 4.85
4900 5128 1.383799 TGGAAGAACCCTGCCATGG 59.616 57.895 7.63 7.63 43.34 3.66
4901 5129 1.139498 TGGAAGAACCCTGCCATGGA 61.139 55.000 18.40 0.00 43.34 3.41
4902 5130 0.039618 GGAAGAACCCTGCCATGGAA 59.960 55.000 18.40 3.09 38.08 3.53
4903 5131 1.467920 GAAGAACCCTGCCATGGAAG 58.532 55.000 18.40 15.86 0.00 3.46
4904 5132 1.004745 GAAGAACCCTGCCATGGAAGA 59.995 52.381 22.70 0.00 0.00 2.87
4905 5133 1.075601 AGAACCCTGCCATGGAAGAA 58.924 50.000 22.70 0.00 0.00 2.52
4906 5134 1.177401 GAACCCTGCCATGGAAGAAC 58.823 55.000 22.70 5.56 0.00 3.01
4907 5135 0.251787 AACCCTGCCATGGAAGAACC 60.252 55.000 22.70 0.00 39.54 3.62
4908 5136 1.380380 CCCTGCCATGGAAGAACCC 60.380 63.158 22.70 0.00 38.00 4.11
4909 5137 1.693640 CCTGCCATGGAAGAACCCT 59.306 57.895 22.70 0.00 38.00 4.34
4910 5138 0.918983 CCTGCCATGGAAGAACCCTA 59.081 55.000 22.70 0.00 38.00 3.53
4911 5139 1.133976 CCTGCCATGGAAGAACCCTAG 60.134 57.143 22.70 0.00 38.00 3.02
4912 5140 0.255890 TGCCATGGAAGAACCCTAGC 59.744 55.000 18.40 0.00 38.00 3.42
4913 5141 0.815615 GCCATGGAAGAACCCTAGCG 60.816 60.000 18.40 0.00 38.00 4.26
4914 5142 0.815615 CCATGGAAGAACCCTAGCGC 60.816 60.000 5.56 0.00 38.00 5.92
4915 5143 0.815615 CATGGAAGAACCCTAGCGCC 60.816 60.000 2.29 0.00 38.00 6.53
4916 5144 1.984288 ATGGAAGAACCCTAGCGCCC 61.984 60.000 2.29 0.00 38.00 6.13
4917 5145 2.189784 GAAGAACCCTAGCGCCCC 59.810 66.667 2.29 0.00 0.00 5.80
4918 5146 2.285442 AAGAACCCTAGCGCCCCT 60.285 61.111 2.29 0.00 0.00 4.79
4919 5147 1.002533 AAGAACCCTAGCGCCCCTA 59.997 57.895 2.29 0.00 0.00 3.53
4920 5148 1.049289 AAGAACCCTAGCGCCCCTAG 61.049 60.000 2.29 0.00 42.68 3.02
4921 5149 1.761271 GAACCCTAGCGCCCCTAGT 60.761 63.158 2.29 0.00 41.68 2.57
4922 5150 1.306739 AACCCTAGCGCCCCTAGTT 60.307 57.895 2.29 0.00 41.68 2.24
4923 5151 1.335882 AACCCTAGCGCCCCTAGTTC 61.336 60.000 2.29 0.00 41.68 3.01
4924 5152 2.508751 CCCTAGCGCCCCTAGTTCC 61.509 68.421 2.29 0.00 41.68 3.62
4925 5153 2.508751 CCTAGCGCCCCTAGTTCCC 61.509 68.421 2.29 0.00 41.68 3.97
4926 5154 2.445274 TAGCGCCCCTAGTTCCCC 60.445 66.667 2.29 0.00 0.00 4.81
4927 5155 2.948801 CTAGCGCCCCTAGTTCCCCT 62.949 65.000 2.29 0.00 38.98 4.79
4928 5156 2.941563 TAGCGCCCCTAGTTCCCCTC 62.942 65.000 2.29 0.00 0.00 4.30
4929 5157 2.041819 CGCCCCTAGTTCCCCTCT 60.042 66.667 0.00 0.00 0.00 3.69
4930 5158 2.134933 CGCCCCTAGTTCCCCTCTC 61.135 68.421 0.00 0.00 0.00 3.20
4931 5159 1.766864 GCCCCTAGTTCCCCTCTCC 60.767 68.421 0.00 0.00 0.00 3.71
4932 5160 1.074395 CCCCTAGTTCCCCTCTCCC 60.074 68.421 0.00 0.00 0.00 4.30
4933 5161 1.604592 CCCCTAGTTCCCCTCTCCCT 61.605 65.000 0.00 0.00 0.00 4.20
4934 5162 0.343726 CCCTAGTTCCCCTCTCCCTT 59.656 60.000 0.00 0.00 0.00 3.95
4935 5163 1.501582 CCTAGTTCCCCTCTCCCTTG 58.498 60.000 0.00 0.00 0.00 3.61
4936 5164 0.833949 CTAGTTCCCCTCTCCCTTGC 59.166 60.000 0.00 0.00 0.00 4.01
4937 5165 0.417841 TAGTTCCCCTCTCCCTTGCT 59.582 55.000 0.00 0.00 0.00 3.91
4938 5166 0.912006 AGTTCCCCTCTCCCTTGCTC 60.912 60.000 0.00 0.00 0.00 4.26
4939 5167 1.616628 TTCCCCTCTCCCTTGCTCC 60.617 63.158 0.00 0.00 0.00 4.70
4940 5168 3.093172 CCCCTCTCCCTTGCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
4941 5169 2.041928 CCCTCTCCCTTGCTCCCT 59.958 66.667 0.00 0.00 0.00 4.20
4942 5170 2.069430 CCCTCTCCCTTGCTCCCTC 61.069 68.421 0.00 0.00 0.00 4.30
4943 5171 2.069430 CCTCTCCCTTGCTCCCTCC 61.069 68.421 0.00 0.00 0.00 4.30
4944 5172 1.002792 CTCTCCCTTGCTCCCTCCT 59.997 63.158 0.00 0.00 0.00 3.69
4945 5173 1.002274 TCTCCCTTGCTCCCTCCTC 59.998 63.158 0.00 0.00 0.00 3.71
4946 5174 2.364317 TCCCTTGCTCCCTCCTCG 60.364 66.667 0.00 0.00 0.00 4.63
4947 5175 2.364317 CCCTTGCTCCCTCCTCGA 60.364 66.667 0.00 0.00 0.00 4.04
4948 5176 2.430610 CCCTTGCTCCCTCCTCGAG 61.431 68.421 5.13 5.13 0.00 4.04
4954 5182 2.124653 TCCCTCCTCGAGCTCGAC 60.125 66.667 33.84 0.00 44.22 4.20
4955 5183 3.213402 CCCTCCTCGAGCTCGACC 61.213 72.222 33.84 0.00 44.22 4.79
4956 5184 2.124487 CCTCCTCGAGCTCGACCT 60.124 66.667 33.84 0.00 44.22 3.85
4957 5185 2.184167 CCTCCTCGAGCTCGACCTC 61.184 68.421 33.84 0.00 44.22 3.85
4958 5186 2.124653 TCCTCGAGCTCGACCTCC 60.125 66.667 33.84 0.00 44.22 4.30
4959 5187 2.124487 CCTCGAGCTCGACCTCCT 60.124 66.667 33.84 0.00 44.22 3.69
4960 5188 2.184167 CCTCGAGCTCGACCTCCTC 61.184 68.421 33.84 0.00 44.22 3.71
4961 5189 1.153249 CTCGAGCTCGACCTCCTCT 60.153 63.158 33.84 0.00 44.22 3.69
4962 5190 1.153329 TCGAGCTCGACCTCCTCTC 60.153 63.158 33.84 0.00 44.22 3.20
4963 5191 1.450491 CGAGCTCGACCTCCTCTCA 60.450 63.158 32.06 0.00 43.02 3.27
4964 5192 1.711060 CGAGCTCGACCTCCTCTCAC 61.711 65.000 32.06 0.00 43.02 3.51
4965 5193 1.711060 GAGCTCGACCTCCTCTCACG 61.711 65.000 0.00 0.00 0.00 4.35
4966 5194 2.766400 GCTCGACCTCCTCTCACGG 61.766 68.421 0.00 0.00 0.00 4.94
4967 5195 1.377463 CTCGACCTCCTCTCACGGT 60.377 63.158 0.00 0.00 0.00 4.83
4968 5196 1.370587 CTCGACCTCCTCTCACGGTC 61.371 65.000 0.00 0.00 42.90 4.79
4969 5197 3.188965 GACCTCCTCTCACGGTCG 58.811 66.667 0.00 0.00 38.00 4.79
4970 5198 1.674980 GACCTCCTCTCACGGTCGT 60.675 63.158 0.00 0.00 38.00 4.34
4971 5199 1.646624 GACCTCCTCTCACGGTCGTC 61.647 65.000 0.00 0.00 38.00 4.20
4972 5200 2.408241 CCTCCTCTCACGGTCGTCC 61.408 68.421 0.00 0.00 0.00 4.79
4973 5201 1.377463 CTCCTCTCACGGTCGTCCT 60.377 63.158 0.00 0.00 0.00 3.85
4974 5202 1.370587 CTCCTCTCACGGTCGTCCTC 61.371 65.000 0.00 0.00 0.00 3.71
4975 5203 2.408241 CCTCTCACGGTCGTCCTCC 61.408 68.421 0.00 0.00 0.00 4.30
4976 5204 1.377463 CTCTCACGGTCGTCCTCCT 60.377 63.158 0.00 0.00 0.00 3.69
4977 5205 1.370587 CTCTCACGGTCGTCCTCCTC 61.371 65.000 0.00 0.00 0.00 3.71
4978 5206 1.377463 CTCACGGTCGTCCTCCTCT 60.377 63.158 0.00 0.00 0.00 3.69
4979 5207 1.370587 CTCACGGTCGTCCTCCTCTC 61.371 65.000 0.00 0.00 0.00 3.20
4980 5208 1.377463 CACGGTCGTCCTCCTCTCT 60.377 63.158 0.00 0.00 0.00 3.10
4981 5209 1.377463 ACGGTCGTCCTCCTCTCTG 60.377 63.158 0.00 0.00 0.00 3.35
4982 5210 2.115911 CGGTCGTCCTCCTCTCTGG 61.116 68.421 0.00 0.00 37.10 3.86
4983 5211 2.419739 GGTCGTCCTCCTCTCTGGC 61.420 68.421 0.00 0.00 35.26 4.85
4984 5212 2.438614 TCGTCCTCCTCTCTGGCG 60.439 66.667 0.00 0.00 35.26 5.69
4985 5213 4.200283 CGTCCTCCTCTCTGGCGC 62.200 72.222 0.00 0.00 35.26 6.53
4986 5214 2.757917 GTCCTCCTCTCTGGCGCT 60.758 66.667 7.64 0.00 35.26 5.92
4987 5215 2.757508 TCCTCCTCTCTGGCGCTG 60.758 66.667 7.64 0.11 35.26 5.18
4988 5216 2.757508 CCTCCTCTCTGGCGCTGA 60.758 66.667 7.64 5.34 35.26 4.26
4989 5217 2.132996 CCTCCTCTCTGGCGCTGAT 61.133 63.158 7.64 0.00 35.26 2.90
4990 5218 1.684386 CCTCCTCTCTGGCGCTGATT 61.684 60.000 7.64 0.00 35.26 2.57
4991 5219 0.249405 CTCCTCTCTGGCGCTGATTC 60.249 60.000 7.64 0.00 35.26 2.52
4992 5220 1.591059 CCTCTCTGGCGCTGATTCG 60.591 63.158 7.64 0.00 0.00 3.34
4993 5221 1.140589 CTCTCTGGCGCTGATTCGT 59.859 57.895 7.64 0.00 0.00 3.85
4994 5222 0.869454 CTCTCTGGCGCTGATTCGTC 60.869 60.000 7.64 0.00 34.19 4.20
4995 5223 2.202610 TCTGGCGCTGATTCGTCG 60.203 61.111 7.64 0.00 36.78 5.12
4996 5224 2.507102 CTGGCGCTGATTCGTCGT 60.507 61.111 7.64 0.00 36.78 4.34
4997 5225 2.506217 TGGCGCTGATTCGTCGTC 60.506 61.111 7.64 0.00 36.78 4.20
4998 5226 3.607987 GGCGCTGATTCGTCGTCG 61.608 66.667 7.64 0.00 38.55 5.12
4999 5227 2.874780 GCGCTGATTCGTCGTCGT 60.875 61.111 0.00 0.00 38.33 4.34
5000 5228 2.836306 GCGCTGATTCGTCGTCGTC 61.836 63.158 0.00 0.00 38.33 4.20
5001 5229 2.548069 CGCTGATTCGTCGTCGTCG 61.548 63.158 5.50 5.50 38.33 5.12
5002 5230 1.225936 GCTGATTCGTCGTCGTCGA 60.226 57.895 10.46 10.46 44.12 4.20
5010 5238 2.879907 TCGTCGTCGATTCACCCC 59.120 61.111 0.00 0.00 41.35 4.95
5011 5239 2.578713 CGTCGTCGATTCACCCCG 60.579 66.667 0.00 0.00 39.71 5.73
5012 5240 2.202703 GTCGTCGATTCACCCCGG 60.203 66.667 0.00 0.00 0.00 5.73
5013 5241 4.137872 TCGTCGATTCACCCCGGC 62.138 66.667 0.00 0.00 0.00 6.13
5014 5242 4.444838 CGTCGATTCACCCCGGCA 62.445 66.667 0.00 0.00 0.00 5.69
5015 5243 2.818274 GTCGATTCACCCCGGCAC 60.818 66.667 0.00 0.00 0.00 5.01
5028 5256 4.084888 GGCACGCTAACGCACACC 62.085 66.667 0.00 0.00 45.53 4.16
5029 5257 3.041940 GCACGCTAACGCACACCT 61.042 61.111 0.00 0.00 45.53 4.00
5030 5258 2.853210 CACGCTAACGCACACCTG 59.147 61.111 0.00 0.00 45.53 4.00
5031 5259 3.041940 ACGCTAACGCACACCTGC 61.042 61.111 0.00 0.00 45.53 4.85
5032 5260 3.041351 CGCTAACGCACACCTGCA 61.041 61.111 0.00 0.00 44.50 4.41
5033 5261 2.863153 GCTAACGCACACCTGCAG 59.137 61.111 6.78 6.78 44.50 4.41
5034 5262 2.680913 GCTAACGCACACCTGCAGG 61.681 63.158 31.60 31.60 44.50 4.85
5035 5263 2.668212 TAACGCACACCTGCAGGC 60.668 61.111 33.06 17.34 44.50 4.85
5036 5264 3.177194 TAACGCACACCTGCAGGCT 62.177 57.895 33.06 16.98 44.50 4.58
5037 5265 4.996434 ACGCACACCTGCAGGCTC 62.996 66.667 33.06 17.10 44.50 4.70
5045 5273 4.463879 CTGCAGGCTCCCGGTGAG 62.464 72.222 5.57 13.79 44.47 3.51
5058 5286 3.558411 GTGAGCAGCCGCGTCATC 61.558 66.667 4.92 0.00 45.49 2.92
5059 5287 3.763356 TGAGCAGCCGCGTCATCT 61.763 61.111 4.92 0.00 45.49 2.90
5060 5288 2.510238 GAGCAGCCGCGTCATCTT 60.510 61.111 4.92 0.00 45.49 2.40
5061 5289 2.510238 AGCAGCCGCGTCATCTTC 60.510 61.111 4.92 0.00 45.49 2.87
5062 5290 3.567797 GCAGCCGCGTCATCTTCC 61.568 66.667 4.92 0.00 0.00 3.46
5063 5291 2.892425 CAGCCGCGTCATCTTCCC 60.892 66.667 4.92 0.00 0.00 3.97
5064 5292 4.162690 AGCCGCGTCATCTTCCCC 62.163 66.667 4.92 0.00 0.00 4.81
5065 5293 4.162690 GCCGCGTCATCTTCCCCT 62.163 66.667 4.92 0.00 0.00 4.79
5066 5294 2.107141 CCGCGTCATCTTCCCCTC 59.893 66.667 4.92 0.00 0.00 4.30
5067 5295 2.427245 CCGCGTCATCTTCCCCTCT 61.427 63.158 4.92 0.00 0.00 3.69
5068 5296 1.517832 CGCGTCATCTTCCCCTCTT 59.482 57.895 0.00 0.00 0.00 2.85
5069 5297 0.108138 CGCGTCATCTTCCCCTCTTT 60.108 55.000 0.00 0.00 0.00 2.52
5070 5298 1.657822 GCGTCATCTTCCCCTCTTTC 58.342 55.000 0.00 0.00 0.00 2.62
5071 5299 1.744114 GCGTCATCTTCCCCTCTTTCC 60.744 57.143 0.00 0.00 0.00 3.13
5072 5300 1.471676 CGTCATCTTCCCCTCTTTCCG 60.472 57.143 0.00 0.00 0.00 4.30
5073 5301 1.831736 GTCATCTTCCCCTCTTTCCGA 59.168 52.381 0.00 0.00 0.00 4.55
5074 5302 1.831736 TCATCTTCCCCTCTTTCCGAC 59.168 52.381 0.00 0.00 0.00 4.79
5075 5303 0.824759 ATCTTCCCCTCTTTCCGACG 59.175 55.000 0.00 0.00 0.00 5.12
5076 5304 1.448013 CTTCCCCTCTTTCCGACGC 60.448 63.158 0.00 0.00 0.00 5.19
5077 5305 3.291101 TTCCCCTCTTTCCGACGCG 62.291 63.158 3.53 3.53 0.00 6.01
5088 5316 4.570663 CGACGCGGATCTGTCCCC 62.571 72.222 12.47 0.00 41.83 4.81
5091 5319 4.271816 CGCGGATCTGTCCCCGAG 62.272 72.222 0.00 0.00 46.33 4.63
5094 5322 3.133946 GGATCTGTCCCCGAGCTC 58.866 66.667 2.73 2.73 38.69 4.09
5095 5323 2.725008 GATCTGTCCCCGAGCTCG 59.275 66.667 29.06 29.06 39.44 5.03
5096 5324 3.492311 GATCTGTCCCCGAGCTCGC 62.492 68.421 30.49 16.98 38.18 5.03
5097 5325 4.742649 TCTGTCCCCGAGCTCGCT 62.743 66.667 30.49 0.00 38.18 4.93
5098 5326 4.504916 CTGTCCCCGAGCTCGCTG 62.505 72.222 30.49 21.76 38.18 5.18
5115 5343 4.972591 GCTTTTTGCATCACCGCT 57.027 50.000 0.00 0.00 42.31 5.52
5116 5344 2.729378 GCTTTTTGCATCACCGCTC 58.271 52.632 0.00 0.00 42.31 5.03
5117 5345 1.067199 GCTTTTTGCATCACCGCTCG 61.067 55.000 0.00 0.00 42.31 5.03
5118 5346 1.067199 CTTTTTGCATCACCGCTCGC 61.067 55.000 0.00 0.00 0.00 5.03
5119 5347 1.790090 TTTTTGCATCACCGCTCGCA 61.790 50.000 0.00 0.00 0.00 5.10
5120 5348 1.585267 TTTTGCATCACCGCTCGCAT 61.585 50.000 0.00 0.00 33.71 4.73
5121 5349 1.980951 TTTGCATCACCGCTCGCATC 61.981 55.000 0.00 0.00 33.71 3.91
5122 5350 3.993234 GCATCACCGCTCGCATCG 61.993 66.667 0.00 0.00 0.00 3.84
5123 5351 3.993234 CATCACCGCTCGCATCGC 61.993 66.667 0.00 0.00 0.00 4.58
5135 5363 4.559229 CATCGCCGCAGAGCTCGA 62.559 66.667 8.37 1.13 36.22 4.04
5136 5364 4.560856 ATCGCCGCAGAGCTCGAC 62.561 66.667 8.37 3.34 35.13 4.20
5142 5370 4.560856 GCAGAGCTCGACGCCGAT 62.561 66.667 8.37 0.00 44.62 4.18
5143 5371 2.653448 CAGAGCTCGACGCCGATG 60.653 66.667 8.37 0.00 44.62 3.84
5144 5372 2.824489 AGAGCTCGACGCCGATGA 60.824 61.111 8.37 0.00 44.62 2.92
5145 5373 2.352915 GAGCTCGACGCCGATGAG 60.353 66.667 0.00 0.00 44.62 2.90
5146 5374 2.824489 AGCTCGACGCCGATGAGA 60.824 61.111 13.00 0.00 44.62 3.27
5147 5375 2.652496 GCTCGACGCCGATGAGAC 60.652 66.667 13.00 2.97 44.62 3.36
5148 5376 3.102985 CTCGACGCCGATGAGACT 58.897 61.111 0.00 0.00 44.62 3.24
5149 5377 1.010574 CTCGACGCCGATGAGACTC 60.011 63.158 0.00 0.00 44.62 3.36
5150 5378 2.024871 CGACGCCGATGAGACTCC 59.975 66.667 0.00 0.00 38.22 3.85
5151 5379 2.024871 GACGCCGATGAGACTCCG 59.975 66.667 0.00 0.00 0.00 4.63
5152 5380 3.471244 GACGCCGATGAGACTCCGG 62.471 68.421 13.93 13.93 45.51 5.14
5153 5381 3.518998 CGCCGATGAGACTCCGGT 61.519 66.667 17.90 0.00 44.63 5.28
5154 5382 2.105128 GCCGATGAGACTCCGGTG 59.895 66.667 17.90 0.00 44.63 4.94
5155 5383 2.415608 GCCGATGAGACTCCGGTGA 61.416 63.158 17.90 0.00 44.63 4.02
5156 5384 1.433879 CCGATGAGACTCCGGTGAC 59.566 63.158 11.17 3.92 38.55 3.67
5157 5385 1.433879 CGATGAGACTCCGGTGACC 59.566 63.158 11.17 0.00 0.00 4.02
5158 5386 1.313091 CGATGAGACTCCGGTGACCA 61.313 60.000 11.17 5.21 0.00 4.02
5159 5387 1.115467 GATGAGACTCCGGTGACCAT 58.885 55.000 11.17 9.60 0.00 3.55
5160 5388 1.482593 GATGAGACTCCGGTGACCATT 59.517 52.381 11.17 0.00 0.00 3.16
5161 5389 1.348064 TGAGACTCCGGTGACCATTT 58.652 50.000 11.17 0.00 0.00 2.32
5162 5390 1.001974 TGAGACTCCGGTGACCATTTG 59.998 52.381 11.17 0.00 0.00 2.32
5163 5391 0.324943 AGACTCCGGTGACCATTTGG 59.675 55.000 11.17 0.00 42.17 3.28
5173 5401 4.095590 CCATTTGGTCACCGGCTT 57.904 55.556 0.00 0.00 0.00 4.35
5174 5402 1.586028 CCATTTGGTCACCGGCTTG 59.414 57.895 0.00 0.00 0.00 4.01
5175 5403 1.178534 CCATTTGGTCACCGGCTTGT 61.179 55.000 0.00 0.00 0.00 3.16
5176 5404 0.039256 CATTTGGTCACCGGCTTGTG 60.039 55.000 0.00 0.00 37.59 3.33
5177 5405 1.805428 ATTTGGTCACCGGCTTGTGC 61.805 55.000 0.00 0.00 36.17 4.57
5188 5416 3.800628 GCTTGTGCCAAATGGACTC 57.199 52.632 2.98 0.00 37.39 3.36
5189 5417 0.109597 GCTTGTGCCAAATGGACTCG 60.110 55.000 2.98 0.00 37.39 4.18
5190 5418 0.109597 CTTGTGCCAAATGGACTCGC 60.110 55.000 2.98 0.00 37.39 5.03
5191 5419 1.523154 TTGTGCCAAATGGACTCGCC 61.523 55.000 2.98 0.00 37.39 5.54
5192 5420 2.745884 TGCCAAATGGACTCGCCG 60.746 61.111 2.98 0.00 40.66 6.46
5193 5421 4.179579 GCCAAATGGACTCGCCGC 62.180 66.667 2.98 0.00 40.66 6.53
5194 5422 2.745884 CCAAATGGACTCGCCGCA 60.746 61.111 0.00 0.00 40.66 5.69
5195 5423 2.114670 CCAAATGGACTCGCCGCAT 61.115 57.895 0.00 0.00 40.66 4.73
5196 5424 1.353103 CAAATGGACTCGCCGCATC 59.647 57.895 0.00 0.00 40.66 3.91
5197 5425 2.173669 AAATGGACTCGCCGCATCG 61.174 57.895 0.00 0.00 40.66 3.84
5198 5426 2.852495 AAATGGACTCGCCGCATCGT 62.852 55.000 0.00 0.00 40.66 3.73
5199 5427 4.794439 TGGACTCGCCGCATCGTG 62.794 66.667 0.00 0.00 40.66 4.35
5200 5428 4.796231 GGACTCGCCGCATCGTGT 62.796 66.667 2.61 2.61 38.63 4.49
5201 5429 2.101575 GACTCGCCGCATCGTGTA 59.898 61.111 2.93 0.00 36.49 2.90
5202 5430 1.939785 GACTCGCCGCATCGTGTAG 60.940 63.158 2.93 0.00 36.49 2.74
5203 5431 2.319011 GACTCGCCGCATCGTGTAGA 62.319 60.000 2.93 0.00 36.49 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.684448 TGTAAAAATTGCGTTCATAATTTCAGA 57.316 25.926 0.00 0.00 35.94 3.27
56 57 7.095523 CCAGCCTTTTCAATTTTGTTCACATAG 60.096 37.037 0.00 0.00 0.00 2.23
508 527 9.423061 CTCTTTTTCTTTTCCTTTTCTGTTTCA 57.577 29.630 0.00 0.00 0.00 2.69
615 636 4.104102 TGGTTTTGGGAAGCTTCTAGAAGA 59.896 41.667 32.16 10.57 40.79 2.87
662 685 2.209690 TCCGGTTTTGGGAATCTTCC 57.790 50.000 0.00 0.00 46.82 3.46
787 813 1.290324 CCGCCCACTCCATCGATAG 59.710 63.158 0.00 0.00 0.00 2.08
788 814 2.867855 GCCGCCCACTCCATCGATA 61.868 63.158 0.00 0.00 0.00 2.92
789 815 4.241555 GCCGCCCACTCCATCGAT 62.242 66.667 0.00 0.00 0.00 3.59
791 817 3.506059 CTAGCCGCCCACTCCATCG 62.506 68.421 0.00 0.00 0.00 3.84
792 818 2.423446 CTAGCCGCCCACTCCATC 59.577 66.667 0.00 0.00 0.00 3.51
793 819 3.866582 GCTAGCCGCCCACTCCAT 61.867 66.667 2.29 0.00 0.00 3.41
796 822 4.577246 CTCGCTAGCCGCCCACTC 62.577 72.222 9.66 0.00 36.73 3.51
806 832 4.277593 CTGGCTCCCGCTCGCTAG 62.278 72.222 0.00 0.00 36.09 3.42
837 863 4.807039 CGCTTGCATGGGCTTGGC 62.807 66.667 3.67 0.00 41.91 4.52
838 864 3.063704 TCGCTTGCATGGGCTTGG 61.064 61.111 11.33 0.00 41.91 3.61
839 865 2.180017 GTCGCTTGCATGGGCTTG 59.820 61.111 11.33 0.00 41.91 4.01
840 866 3.434319 CGTCGCTTGCATGGGCTT 61.434 61.111 11.33 0.00 41.91 4.35
843 869 4.170062 CTGCGTCGCTTGCATGGG 62.170 66.667 19.50 10.06 42.32 4.00
844 870 4.824166 GCTGCGTCGCTTGCATGG 62.824 66.667 23.49 6.76 42.32 3.66
893 919 4.567385 GAGAGCTCCTCGCCAGCG 62.567 72.222 10.93 5.50 42.14 5.18
902 928 2.445438 CGCGAAAACGGAGAGCTCC 61.445 63.158 10.93 6.46 46.18 4.70
903 929 3.073446 CGCGAAAACGGAGAGCTC 58.927 61.111 5.27 5.27 0.00 4.09
1181 1213 4.248859 TCTTGCAGCAGATCTACAAGAAC 58.751 43.478 19.37 0.30 46.73 3.01
1589 1633 9.832445 AACATCTTATACTCCGTATTTGTGAAT 57.168 29.630 0.00 0.00 30.79 2.57
1796 1841 9.125026 GGTCTTTAAATGATAATGTGATCCAGT 57.875 33.333 0.00 0.00 0.00 4.00
1949 1994 3.128938 AGATGTCTGTACAGTAGGCGTTC 59.871 47.826 21.99 10.54 39.49 3.95
1953 1998 2.683867 ACGAGATGTCTGTACAGTAGGC 59.316 50.000 21.99 10.79 39.49 3.93
2204 2250 4.569676 TCTTATAATGGTGGGGAGGAGA 57.430 45.455 0.00 0.00 0.00 3.71
2205 2251 4.599241 ACATCTTATAATGGTGGGGAGGAG 59.401 45.833 0.00 0.00 0.00 3.69
2206 2252 4.577096 ACATCTTATAATGGTGGGGAGGA 58.423 43.478 0.00 0.00 0.00 3.71
2207 2253 5.324832 AACATCTTATAATGGTGGGGAGG 57.675 43.478 0.00 0.00 0.00 4.30
2208 2254 6.040842 CCAAAACATCTTATAATGGTGGGGAG 59.959 42.308 0.00 0.00 0.00 4.30
2209 2255 5.896678 CCAAAACATCTTATAATGGTGGGGA 59.103 40.000 0.00 0.00 0.00 4.81
2210 2256 5.896678 TCCAAAACATCTTATAATGGTGGGG 59.103 40.000 0.25 0.00 32.39 4.96
2211 2257 7.601705 ATCCAAAACATCTTATAATGGTGGG 57.398 36.000 0.25 0.00 32.39 4.61
2359 2410 6.993079 TCAGATAAGAAGTACACAGAAGCAA 58.007 36.000 0.00 0.00 0.00 3.91
2428 2479 7.565190 AATAGATATGGGAGCTCTCAAATGA 57.435 36.000 22.63 6.85 0.00 2.57
2489 2541 9.979578 TGCACAGTGAATAAATTAAAGAATTGT 57.020 25.926 4.15 0.00 35.38 2.71
2507 2559 1.493772 CAACAATTGGCTGCACAGTG 58.506 50.000 10.83 0.00 0.00 3.66
2509 2561 0.249531 TGCAACAATTGGCTGCACAG 60.250 50.000 25.20 0.00 41.01 3.66
2510 2562 1.821258 TGCAACAATTGGCTGCACA 59.179 47.368 25.20 10.62 41.01 4.57
2511 2563 4.754570 TGCAACAATTGGCTGCAC 57.245 50.000 25.20 6.84 41.01 4.57
2512 2564 1.300003 CGTGCAACAATTGGCTGCA 60.300 52.632 25.20 25.20 43.54 4.41
2513 2565 0.388907 ATCGTGCAACAATTGGCTGC 60.389 50.000 21.58 21.58 35.74 5.25
2514 2566 1.621107 GATCGTGCAACAATTGGCTG 58.379 50.000 10.83 7.85 35.74 4.85
2515 2567 0.527565 GGATCGTGCAACAATTGGCT 59.472 50.000 10.83 0.00 35.74 4.75
2516 2568 0.527565 AGGATCGTGCAACAATTGGC 59.472 50.000 10.83 5.04 35.74 4.52
2517 2569 1.541147 ACAGGATCGTGCAACAATTGG 59.459 47.619 15.15 0.00 35.74 3.16
2518 2570 2.725759 CGACAGGATCGTGCAACAATTG 60.726 50.000 15.15 3.24 46.25 2.32
2519 2571 1.464608 CGACAGGATCGTGCAACAATT 59.535 47.619 15.15 0.00 46.25 2.32
2520 2572 1.078709 CGACAGGATCGTGCAACAAT 58.921 50.000 15.15 0.00 46.25 2.71
2521 2573 2.527671 CGACAGGATCGTGCAACAA 58.472 52.632 15.15 0.00 46.25 2.83
2522 2574 4.260194 CGACAGGATCGTGCAACA 57.740 55.556 15.15 0.00 46.25 3.33
2531 2583 0.175760 CGTGGTTGGATCGACAGGAT 59.824 55.000 0.00 0.00 38.35 3.24
2532 2584 1.589630 CGTGGTTGGATCGACAGGA 59.410 57.895 0.00 0.00 0.00 3.86
2533 2585 2.100631 GCGTGGTTGGATCGACAGG 61.101 63.158 0.00 0.00 0.00 4.00
2534 2586 0.740868 ATGCGTGGTTGGATCGACAG 60.741 55.000 0.00 0.00 0.00 3.51
2535 2587 1.018752 CATGCGTGGTTGGATCGACA 61.019 55.000 0.00 0.00 0.00 4.35
2536 2588 1.019278 ACATGCGTGGTTGGATCGAC 61.019 55.000 11.36 0.00 0.00 4.20
2537 2589 1.018752 CACATGCGTGGTTGGATCGA 61.019 55.000 11.36 0.00 39.64 3.59
2538 2590 1.425031 CACATGCGTGGTTGGATCG 59.575 57.895 11.36 0.00 39.64 3.69
2548 2600 1.992667 CACTTCGTCATACACATGCGT 59.007 47.619 0.00 0.00 34.99 5.24
2549 2601 1.324435 CCACTTCGTCATACACATGCG 59.676 52.381 0.00 0.00 34.84 4.73
2550 2602 2.604914 CTCCACTTCGTCATACACATGC 59.395 50.000 0.00 0.00 31.73 4.06
2551 2603 2.604914 GCTCCACTTCGTCATACACATG 59.395 50.000 0.00 0.00 0.00 3.21
2552 2604 2.233676 TGCTCCACTTCGTCATACACAT 59.766 45.455 0.00 0.00 0.00 3.21
2553 2605 1.616374 TGCTCCACTTCGTCATACACA 59.384 47.619 0.00 0.00 0.00 3.72
2554 2606 1.993370 GTGCTCCACTTCGTCATACAC 59.007 52.381 0.00 0.00 0.00 2.90
2555 2607 1.616374 TGTGCTCCACTTCGTCATACA 59.384 47.619 0.00 0.00 35.11 2.29
2556 2608 2.363788 TGTGCTCCACTTCGTCATAC 57.636 50.000 0.00 0.00 35.11 2.39
2557 2609 2.159099 GGATGTGCTCCACTTCGTCATA 60.159 50.000 5.52 0.00 44.26 2.15
2558 2610 1.406069 GGATGTGCTCCACTTCGTCAT 60.406 52.381 5.52 0.00 44.26 3.06
2559 2611 0.037326 GGATGTGCTCCACTTCGTCA 60.037 55.000 5.52 0.00 44.26 4.35
2560 2612 2.755929 GGATGTGCTCCACTTCGTC 58.244 57.895 5.52 0.00 44.26 4.20
2568 2620 0.543277 TGATCCTGTGGATGTGCTCC 59.457 55.000 3.57 0.00 43.27 4.70
2569 2621 2.286872 CTTGATCCTGTGGATGTGCTC 58.713 52.381 3.57 0.00 43.27 4.26
2570 2622 1.632409 ACTTGATCCTGTGGATGTGCT 59.368 47.619 3.57 0.00 43.27 4.40
2571 2623 2.119801 ACTTGATCCTGTGGATGTGC 57.880 50.000 3.57 0.00 43.27 4.57
2572 2624 4.036027 GCAATACTTGATCCTGTGGATGTG 59.964 45.833 3.57 0.00 43.27 3.21
2573 2625 4.202441 GCAATACTTGATCCTGTGGATGT 58.798 43.478 3.57 0.00 43.27 3.06
2574 2626 3.567164 GGCAATACTTGATCCTGTGGATG 59.433 47.826 3.57 0.00 43.27 3.51
2575 2627 3.202818 TGGCAATACTTGATCCTGTGGAT 59.797 43.478 0.00 0.00 46.28 3.41
2576 2628 2.575735 TGGCAATACTTGATCCTGTGGA 59.424 45.455 0.00 0.00 35.55 4.02
2577 2629 3.003394 TGGCAATACTTGATCCTGTGG 57.997 47.619 0.00 0.00 0.00 4.17
2578 2630 3.181507 CGTTGGCAATACTTGATCCTGTG 60.182 47.826 1.92 0.00 0.00 3.66
2579 2631 3.009723 CGTTGGCAATACTTGATCCTGT 58.990 45.455 1.92 0.00 0.00 4.00
2580 2632 2.355756 CCGTTGGCAATACTTGATCCTG 59.644 50.000 1.92 0.00 0.00 3.86
2581 2633 2.026262 ACCGTTGGCAATACTTGATCCT 60.026 45.455 1.92 0.00 0.00 3.24
2582 2634 2.354821 GACCGTTGGCAATACTTGATCC 59.645 50.000 1.92 0.00 0.00 3.36
2583 2635 2.030457 CGACCGTTGGCAATACTTGATC 59.970 50.000 1.92 0.00 0.00 2.92
2584 2636 2.006888 CGACCGTTGGCAATACTTGAT 58.993 47.619 1.92 0.00 0.00 2.57
2585 2637 1.270412 ACGACCGTTGGCAATACTTGA 60.270 47.619 1.92 0.00 0.00 3.02
2586 2638 1.136085 CACGACCGTTGGCAATACTTG 60.136 52.381 1.92 0.00 0.00 3.16
2587 2639 1.153353 CACGACCGTTGGCAATACTT 58.847 50.000 1.92 0.00 0.00 2.24
2588 2640 1.296056 GCACGACCGTTGGCAATACT 61.296 55.000 1.92 0.00 0.00 2.12
2589 2641 1.133869 GCACGACCGTTGGCAATAC 59.866 57.895 1.92 0.00 0.00 1.89
2590 2642 1.301795 TGCACGACCGTTGGCAATA 60.302 52.632 1.92 0.00 32.54 1.90
2591 2643 2.593148 TGCACGACCGTTGGCAAT 60.593 55.556 1.92 0.00 32.54 3.56
2592 2644 2.646117 TAGTGCACGACCGTTGGCAA 62.646 55.000 12.01 0.00 38.10 4.52
2593 2645 2.646117 TTAGTGCACGACCGTTGGCA 62.646 55.000 12.01 3.89 0.00 4.92
2594 2646 1.897398 CTTAGTGCACGACCGTTGGC 61.897 60.000 12.01 0.00 0.00 4.52
2595 2647 0.599204 ACTTAGTGCACGACCGTTGG 60.599 55.000 12.01 0.10 0.00 3.77
2596 2648 2.054687 TACTTAGTGCACGACCGTTG 57.945 50.000 12.01 1.63 0.00 4.10
2597 2649 2.730090 CGATACTTAGTGCACGACCGTT 60.730 50.000 12.01 0.00 0.00 4.44
2598 2650 1.202110 CGATACTTAGTGCACGACCGT 60.202 52.381 12.01 8.61 0.00 4.83
2599 2651 1.202110 ACGATACTTAGTGCACGACCG 60.202 52.381 12.01 11.44 0.00 4.79
2600 2652 2.182825 CACGATACTTAGTGCACGACC 58.817 52.381 12.01 0.00 0.00 4.79
2601 2653 2.592897 CACACGATACTTAGTGCACGAC 59.407 50.000 12.01 0.00 41.72 4.34
2602 2654 2.858839 CACACGATACTTAGTGCACGA 58.141 47.619 12.01 2.52 41.72 4.35
2607 2659 3.431912 TGCTTTGCACACGATACTTAGTG 59.568 43.478 0.00 0.00 43.46 2.74
2608 2660 3.659786 TGCTTTGCACACGATACTTAGT 58.340 40.909 0.00 0.00 31.71 2.24
2609 2661 3.679980 ACTGCTTTGCACACGATACTTAG 59.320 43.478 0.00 0.00 33.79 2.18
2610 2662 3.659786 ACTGCTTTGCACACGATACTTA 58.340 40.909 0.00 0.00 33.79 2.24
2611 2663 2.494059 ACTGCTTTGCACACGATACTT 58.506 42.857 0.00 0.00 33.79 2.24
2612 2664 2.169832 ACTGCTTTGCACACGATACT 57.830 45.000 0.00 0.00 33.79 2.12
2613 2665 2.412847 GGAACTGCTTTGCACACGATAC 60.413 50.000 0.00 0.00 33.79 2.24
2614 2666 1.804151 GGAACTGCTTTGCACACGATA 59.196 47.619 0.00 0.00 33.79 2.92
2615 2667 0.593128 GGAACTGCTTTGCACACGAT 59.407 50.000 0.00 0.00 33.79 3.73
2616 2668 1.771073 CGGAACTGCTTTGCACACGA 61.771 55.000 0.00 0.00 33.79 4.35
2617 2669 1.369209 CGGAACTGCTTTGCACACG 60.369 57.895 0.00 0.00 33.79 4.49
2618 2670 1.658409 GCGGAACTGCTTTGCACAC 60.658 57.895 0.00 0.00 33.79 3.82
2619 2671 1.823470 AGCGGAACTGCTTTGCACA 60.823 52.632 1.99 0.00 44.46 4.57
2620 2672 3.034030 AGCGGAACTGCTTTGCAC 58.966 55.556 1.99 0.00 44.46 4.57
2627 2679 2.117941 AAAACTGCGAGCGGAACTGC 62.118 55.000 11.27 0.00 0.00 4.40
2628 2680 1.136336 GTAAAACTGCGAGCGGAACTG 60.136 52.381 11.27 0.00 0.00 3.16
2629 2681 1.145803 GTAAAACTGCGAGCGGAACT 58.854 50.000 11.27 0.00 0.00 3.01
2630 2682 0.165295 GGTAAAACTGCGAGCGGAAC 59.835 55.000 11.27 3.45 0.00 3.62
2631 2683 0.249953 TGGTAAAACTGCGAGCGGAA 60.250 50.000 11.27 0.00 0.00 4.30
2632 2684 0.036765 ATGGTAAAACTGCGAGCGGA 60.037 50.000 11.27 0.00 0.00 5.54
2633 2685 0.096976 CATGGTAAAACTGCGAGCGG 59.903 55.000 1.84 1.84 0.00 5.52
2634 2686 0.796312 ACATGGTAAAACTGCGAGCG 59.204 50.000 0.00 0.00 0.00 5.03
2635 2687 2.225491 TGAACATGGTAAAACTGCGAGC 59.775 45.455 0.00 0.00 0.00 5.03
2636 2688 4.481930 TTGAACATGGTAAAACTGCGAG 57.518 40.909 0.00 0.00 0.00 5.03
2637 2689 6.751514 ATATTGAACATGGTAAAACTGCGA 57.248 33.333 0.00 0.00 0.00 5.10
2638 2690 8.957028 CATAATATTGAACATGGTAAAACTGCG 58.043 33.333 0.00 0.00 0.00 5.18
2639 2691 9.801873 ACATAATATTGAACATGGTAAAACTGC 57.198 29.630 0.00 0.00 0.00 4.40
2664 2716 2.076863 CGAGGACTTGACAATTGGGAC 58.923 52.381 10.83 1.70 0.00 4.46
2665 2717 1.974957 TCGAGGACTTGACAATTGGGA 59.025 47.619 10.83 0.00 0.00 4.37
2712 2764 2.271800 CACTTCAGCGAATCCAGTACC 58.728 52.381 0.00 0.00 0.00 3.34
2766 2818 6.693545 CCGTATCTAGACAAATCTGAGTCAAC 59.306 42.308 0.00 0.00 37.23 3.18
2769 2821 6.621316 TCCGTATCTAGACAAATCTGAGTC 57.379 41.667 0.00 0.00 36.29 3.36
2830 3029 5.317808 TCCGTCCCAAATTAATTGACTCAA 58.682 37.500 0.39 0.00 41.85 3.02
3117 3334 9.713713 AAGACTTTTAATCTACTGAAGAAGGTC 57.286 33.333 0.00 0.00 37.89 3.85
3315 3534 7.651704 GCAACAAGTACACCATTATTCAAACTT 59.348 33.333 0.00 0.00 0.00 2.66
3451 3671 2.222027 ACTTGCTCCACTAACAACAGC 58.778 47.619 0.00 0.00 0.00 4.40
3494 3714 3.356290 AGCCGCATAGGAAAACTTTCAT 58.644 40.909 4.67 0.00 45.00 2.57
3569 3793 3.873910 ACAACACAGAGCCCATATGTAC 58.126 45.455 1.24 0.00 30.41 2.90
3628 3852 3.031736 TCTATCCCTAGTGACCTGCAAC 58.968 50.000 0.00 0.00 0.00 4.17
3788 4012 5.505181 GGATCTGCTCCATTAATTAGGGA 57.495 43.478 7.49 7.49 44.26 4.20
3874 4099 2.031157 CGTGCAAGTTCCCCAACTAAAG 60.031 50.000 0.00 0.00 42.45 1.85
3936 4161 4.824289 CAGCAGCATAAGGGTTTGAATTT 58.176 39.130 0.00 0.00 0.00 1.82
3963 4188 4.940654 TCATTCACATTTTGCTATCACCGA 59.059 37.500 0.00 0.00 0.00 4.69
3968 4193 5.105797 TGGTGGTCATTCACATTTTGCTATC 60.106 40.000 0.00 0.00 39.27 2.08
4032 4257 3.439129 CAGCTGCATCTTCATCAACTTCA 59.561 43.478 0.00 0.00 0.00 3.02
4188 4413 1.527311 GCGTGTCACTGGAACTTTCTC 59.473 52.381 0.65 0.00 0.00 2.87
4238 4463 6.014925 ACAAACTGAGCCCGGTAAAATAAAAT 60.015 34.615 0.00 0.00 0.00 1.82
4562 4789 2.509336 AGCGCGTACTGGCATGAC 60.509 61.111 8.43 0.00 0.00 3.06
4685 4913 3.258123 TCGGATCATCACTGAAACTGACA 59.742 43.478 0.00 0.00 34.37 3.58
4747 4975 6.099701 ACCCATGACTGCTAATATTACACTCA 59.900 38.462 0.00 1.85 0.00 3.41
4758 4986 3.411446 CTGAAACACCCATGACTGCTAA 58.589 45.455 0.00 0.00 0.00 3.09
4868 5096 1.891722 CTTCCATGGCAGGGGCAAAC 61.892 60.000 19.39 0.00 42.43 2.93
4874 5102 1.380380 GGGTTCTTCCATGGCAGGG 60.380 63.158 12.97 12.97 38.11 4.45
4875 5103 0.682209 CAGGGTTCTTCCATGGCAGG 60.682 60.000 11.74 2.03 43.43 4.85
4876 5104 1.318158 GCAGGGTTCTTCCATGGCAG 61.318 60.000 6.96 5.82 46.73 4.85
4877 5105 1.304381 GCAGGGTTCTTCCATGGCA 60.304 57.895 6.96 0.00 46.73 4.92
4878 5106 3.608432 GCAGGGTTCTTCCATGGC 58.392 61.111 6.96 0.00 46.73 4.40
4879 5107 0.032813 ATGGCAGGGTTCTTCCATGG 60.033 55.000 4.97 4.97 43.67 3.66
4880 5108 3.602104 ATGGCAGGGTTCTTCCATG 57.398 52.632 0.00 0.00 43.67 3.66
4881 5109 0.032813 CCATGGCAGGGTTCTTCCAT 60.033 55.000 10.66 0.00 45.68 3.41
4882 5110 1.139498 TCCATGGCAGGGTTCTTCCA 61.139 55.000 18.88 0.00 40.43 3.53
4883 5111 0.039618 TTCCATGGCAGGGTTCTTCC 59.960 55.000 18.88 0.00 0.00 3.46
4884 5112 1.004745 TCTTCCATGGCAGGGTTCTTC 59.995 52.381 18.88 0.00 0.00 2.87
4885 5113 1.075601 TCTTCCATGGCAGGGTTCTT 58.924 50.000 18.88 0.00 0.00 2.52
4886 5114 1.075601 TTCTTCCATGGCAGGGTTCT 58.924 50.000 18.88 0.00 0.00 3.01
4887 5115 1.177401 GTTCTTCCATGGCAGGGTTC 58.823 55.000 18.88 1.99 0.00 3.62
4888 5116 0.251787 GGTTCTTCCATGGCAGGGTT 60.252 55.000 18.88 0.00 35.97 4.11
4889 5117 1.384191 GGTTCTTCCATGGCAGGGT 59.616 57.895 18.88 0.00 35.97 4.34
4890 5118 1.380380 GGGTTCTTCCATGGCAGGG 60.380 63.158 12.97 12.97 38.11 4.45
4891 5119 0.918983 TAGGGTTCTTCCATGGCAGG 59.081 55.000 11.74 2.03 38.11 4.85
4892 5120 2.338577 CTAGGGTTCTTCCATGGCAG 57.661 55.000 6.96 5.82 38.11 4.85
4894 5122 3.102090 GCTAGGGTTCTTCCATGGC 57.898 57.895 6.96 0.00 45.99 4.40
4895 5123 0.815615 GCGCTAGGGTTCTTCCATGG 60.816 60.000 4.97 4.97 38.11 3.66
4896 5124 0.815615 GGCGCTAGGGTTCTTCCATG 60.816 60.000 7.64 0.00 38.11 3.66
4897 5125 1.527370 GGCGCTAGGGTTCTTCCAT 59.473 57.895 7.64 0.00 38.11 3.41
4898 5126 2.666098 GGGCGCTAGGGTTCTTCCA 61.666 63.158 7.64 0.00 38.11 3.53
4899 5127 2.189784 GGGCGCTAGGGTTCTTCC 59.810 66.667 7.64 0.38 0.00 3.46
4900 5128 1.047034 TAGGGGCGCTAGGGTTCTTC 61.047 60.000 7.64 0.00 0.00 2.87
4901 5129 1.002533 TAGGGGCGCTAGGGTTCTT 59.997 57.895 7.64 0.70 0.00 2.52
4902 5130 1.457831 CTAGGGGCGCTAGGGTTCT 60.458 63.158 26.18 6.34 0.00 3.01
4903 5131 1.335882 AACTAGGGGCGCTAGGGTTC 61.336 60.000 33.45 1.56 0.00 3.62
4904 5132 1.306739 AACTAGGGGCGCTAGGGTT 60.307 57.895 33.45 21.77 0.00 4.11
4905 5133 1.761271 GAACTAGGGGCGCTAGGGT 60.761 63.158 33.45 24.03 0.00 4.34
4906 5134 2.508751 GGAACTAGGGGCGCTAGGG 61.509 68.421 33.45 17.26 0.00 3.53
4907 5135 2.508751 GGGAACTAGGGGCGCTAGG 61.509 68.421 33.45 19.92 0.00 3.02
4908 5136 2.508751 GGGGAACTAGGGGCGCTAG 61.509 68.421 30.37 30.37 0.00 3.42
4909 5137 2.445274 GGGGAACTAGGGGCGCTA 60.445 66.667 7.64 11.09 0.00 4.26
4910 5138 4.416601 AGGGGAACTAGGGGCGCT 62.417 66.667 7.64 9.68 0.00 5.92
4911 5139 3.862991 GAGGGGAACTAGGGGCGC 61.863 72.222 0.00 0.00 0.00 6.53
4912 5140 2.041819 AGAGGGGAACTAGGGGCG 60.042 66.667 0.00 0.00 0.00 6.13
4913 5141 1.766864 GGAGAGGGGAACTAGGGGC 60.767 68.421 0.00 0.00 0.00 5.80
4914 5142 1.074395 GGGAGAGGGGAACTAGGGG 60.074 68.421 0.00 0.00 0.00 4.79
4915 5143 0.343726 AAGGGAGAGGGGAACTAGGG 59.656 60.000 0.00 0.00 0.00 3.53
4916 5144 1.501582 CAAGGGAGAGGGGAACTAGG 58.498 60.000 0.00 0.00 0.00 3.02
4917 5145 0.833949 GCAAGGGAGAGGGGAACTAG 59.166 60.000 0.00 0.00 0.00 2.57
4918 5146 0.417841 AGCAAGGGAGAGGGGAACTA 59.582 55.000 0.00 0.00 0.00 2.24
4919 5147 0.912006 GAGCAAGGGAGAGGGGAACT 60.912 60.000 0.00 0.00 0.00 3.01
4920 5148 1.604915 GAGCAAGGGAGAGGGGAAC 59.395 63.158 0.00 0.00 0.00 3.62
4921 5149 1.616628 GGAGCAAGGGAGAGGGGAA 60.617 63.158 0.00 0.00 0.00 3.97
4922 5150 2.041265 GGAGCAAGGGAGAGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
4923 5151 3.093172 GGGAGCAAGGGAGAGGGG 61.093 72.222 0.00 0.00 0.00 4.79
4924 5152 2.041928 AGGGAGCAAGGGAGAGGG 59.958 66.667 0.00 0.00 0.00 4.30
4925 5153 2.069430 GGAGGGAGCAAGGGAGAGG 61.069 68.421 0.00 0.00 0.00 3.69
4926 5154 1.002792 AGGAGGGAGCAAGGGAGAG 59.997 63.158 0.00 0.00 0.00 3.20
4927 5155 1.002274 GAGGAGGGAGCAAGGGAGA 59.998 63.158 0.00 0.00 0.00 3.71
4928 5156 2.430610 CGAGGAGGGAGCAAGGGAG 61.431 68.421 0.00 0.00 0.00 4.30
4929 5157 2.364317 CGAGGAGGGAGCAAGGGA 60.364 66.667 0.00 0.00 0.00 4.20
4930 5158 2.364317 TCGAGGAGGGAGCAAGGG 60.364 66.667 0.00 0.00 0.00 3.95
4931 5159 3.215245 CTCGAGGAGGGAGCAAGG 58.785 66.667 3.91 0.00 0.00 3.61
4936 5164 2.190843 TCGAGCTCGAGGAGGGAG 59.809 66.667 33.84 3.79 44.22 4.30
4945 5173 1.450491 TGAGAGGAGGTCGAGCTCG 60.450 63.158 31.81 30.03 41.45 5.03
4946 5174 1.711060 CGTGAGAGGAGGTCGAGCTC 61.711 65.000 31.61 31.61 0.00 4.09
4947 5175 1.747367 CGTGAGAGGAGGTCGAGCT 60.747 63.158 18.67 18.67 0.00 4.09
4948 5176 2.766400 CCGTGAGAGGAGGTCGAGC 61.766 68.421 6.48 6.48 0.00 5.03
4949 5177 1.370587 GACCGTGAGAGGAGGTCGAG 61.371 65.000 0.00 0.00 43.96 4.04
4950 5178 1.376942 GACCGTGAGAGGAGGTCGA 60.377 63.158 0.00 0.00 43.96 4.20
4951 5179 3.188965 GACCGTGAGAGGAGGTCG 58.811 66.667 0.00 0.00 43.96 4.79
4953 5181 1.674980 GACGACCGTGAGAGGAGGT 60.675 63.158 0.00 0.00 41.63 3.85
4954 5182 2.408241 GGACGACCGTGAGAGGAGG 61.408 68.421 0.00 0.00 34.73 4.30
4955 5183 1.370587 GAGGACGACCGTGAGAGGAG 61.371 65.000 0.00 0.00 41.83 3.69
4956 5184 1.376942 GAGGACGACCGTGAGAGGA 60.377 63.158 0.00 0.00 41.83 3.71
4957 5185 2.408241 GGAGGACGACCGTGAGAGG 61.408 68.421 0.00 0.00 41.83 3.69
4958 5186 1.370587 GAGGAGGACGACCGTGAGAG 61.371 65.000 0.00 0.00 41.83 3.20
4959 5187 1.376942 GAGGAGGACGACCGTGAGA 60.377 63.158 0.00 0.00 41.83 3.27
4960 5188 1.370587 GAGAGGAGGACGACCGTGAG 61.371 65.000 0.00 0.00 41.83 3.51
4961 5189 1.376942 GAGAGGAGGACGACCGTGA 60.377 63.158 0.00 0.00 41.83 4.35
4962 5190 1.377463 AGAGAGGAGGACGACCGTG 60.377 63.158 0.00 0.00 41.83 4.94
4963 5191 1.377463 CAGAGAGGAGGACGACCGT 60.377 63.158 0.00 0.00 41.83 4.83
4964 5192 2.115911 CCAGAGAGGAGGACGACCG 61.116 68.421 0.00 0.00 41.22 4.79
4965 5193 2.419739 GCCAGAGAGGAGGACGACC 61.420 68.421 0.00 0.00 41.22 4.79
4966 5194 2.766400 CGCCAGAGAGGAGGACGAC 61.766 68.421 0.00 0.00 41.22 4.34
4967 5195 2.438614 CGCCAGAGAGGAGGACGA 60.439 66.667 0.00 0.00 41.22 4.20
4968 5196 4.200283 GCGCCAGAGAGGAGGACG 62.200 72.222 0.00 0.00 41.22 4.79
4969 5197 2.757917 AGCGCCAGAGAGGAGGAC 60.758 66.667 2.29 0.00 41.22 3.85
4970 5198 2.580155 ATCAGCGCCAGAGAGGAGGA 62.580 60.000 2.29 0.00 41.22 3.71
4971 5199 1.684386 AATCAGCGCCAGAGAGGAGG 61.684 60.000 2.29 0.00 41.22 4.30
4972 5200 0.249405 GAATCAGCGCCAGAGAGGAG 60.249 60.000 2.29 0.00 41.22 3.69
4973 5201 1.819229 GAATCAGCGCCAGAGAGGA 59.181 57.895 2.29 0.00 41.22 3.71
4974 5202 1.591059 CGAATCAGCGCCAGAGAGG 60.591 63.158 2.29 0.00 41.84 3.69
4975 5203 0.869454 GACGAATCAGCGCCAGAGAG 60.869 60.000 2.29 1.05 33.86 3.20
4976 5204 1.139734 GACGAATCAGCGCCAGAGA 59.860 57.895 2.29 0.00 33.86 3.10
4977 5205 2.226896 CGACGAATCAGCGCCAGAG 61.227 63.158 2.29 0.00 33.86 3.35
4978 5206 2.202610 CGACGAATCAGCGCCAGA 60.203 61.111 2.29 2.36 33.86 3.86
4979 5207 2.507102 ACGACGAATCAGCGCCAG 60.507 61.111 2.29 0.00 33.86 4.85
4980 5208 2.506217 GACGACGAATCAGCGCCA 60.506 61.111 2.29 0.00 33.86 5.69
4981 5209 3.607987 CGACGACGAATCAGCGCC 61.608 66.667 2.29 0.00 42.66 6.53
4982 5210 2.836306 GACGACGACGAATCAGCGC 61.836 63.158 15.32 0.00 42.66 5.92
4983 5211 2.548069 CGACGACGACGAATCAGCG 61.548 63.158 15.32 4.02 42.66 5.18
4984 5212 1.225936 TCGACGACGACGAATCAGC 60.226 57.895 19.29 0.00 43.81 4.26
4994 5222 2.578713 CGGGGTGAATCGACGACG 60.579 66.667 0.00 0.00 41.26 5.12
4995 5223 2.202703 CCGGGGTGAATCGACGAC 60.203 66.667 0.00 0.00 0.00 4.34
4996 5224 4.137872 GCCGGGGTGAATCGACGA 62.138 66.667 2.18 0.00 0.00 4.20
4997 5225 4.444838 TGCCGGGGTGAATCGACG 62.445 66.667 2.18 0.00 0.00 5.12
4998 5226 2.818274 GTGCCGGGGTGAATCGAC 60.818 66.667 2.18 0.00 0.00 4.20
4999 5227 4.444838 CGTGCCGGGGTGAATCGA 62.445 66.667 2.18 0.00 0.00 3.59
5001 5229 2.862674 TTAGCGTGCCGGGGTGAATC 62.863 60.000 2.18 0.00 0.00 2.52
5002 5230 2.961893 TTAGCGTGCCGGGGTGAAT 61.962 57.895 2.18 0.00 0.00 2.57
5003 5231 3.627952 TTAGCGTGCCGGGGTGAA 61.628 61.111 2.18 0.00 0.00 3.18
5004 5232 4.382320 GTTAGCGTGCCGGGGTGA 62.382 66.667 2.18 0.00 0.00 4.02
5028 5256 4.463879 CTCACCGGGAGCCTGCAG 62.464 72.222 6.78 6.78 36.69 4.41
5041 5269 3.558411 GATGACGCGGCTGCTCAC 61.558 66.667 15.80 7.21 39.65 3.51
5042 5270 3.300934 AAGATGACGCGGCTGCTCA 62.301 57.895 15.80 17.63 39.65 4.26
5043 5271 2.510238 AAGATGACGCGGCTGCTC 60.510 61.111 15.80 12.50 39.65 4.26
5044 5272 2.510238 GAAGATGACGCGGCTGCT 60.510 61.111 15.80 7.55 39.65 4.24
5045 5273 3.567797 GGAAGATGACGCGGCTGC 61.568 66.667 15.80 7.70 37.91 5.25
5046 5274 2.892425 GGGAAGATGACGCGGCTG 60.892 66.667 15.80 0.00 0.00 4.85
5047 5275 4.162690 GGGGAAGATGACGCGGCT 62.163 66.667 15.80 0.00 0.00 5.52
5048 5276 4.162690 AGGGGAAGATGACGCGGC 62.163 66.667 12.47 8.67 0.00 6.53
5049 5277 1.961180 AAGAGGGGAAGATGACGCGG 61.961 60.000 12.47 0.00 0.00 6.46
5050 5278 0.108138 AAAGAGGGGAAGATGACGCG 60.108 55.000 3.53 3.53 0.00 6.01
5051 5279 1.657822 GAAAGAGGGGAAGATGACGC 58.342 55.000 0.00 0.00 0.00 5.19
5052 5280 1.471676 CGGAAAGAGGGGAAGATGACG 60.472 57.143 0.00 0.00 0.00 4.35
5053 5281 1.831736 TCGGAAAGAGGGGAAGATGAC 59.168 52.381 0.00 0.00 0.00 3.06
5054 5282 1.831736 GTCGGAAAGAGGGGAAGATGA 59.168 52.381 0.00 0.00 0.00 2.92
5055 5283 1.471676 CGTCGGAAAGAGGGGAAGATG 60.472 57.143 0.00 0.00 0.00 2.90
5056 5284 0.824759 CGTCGGAAAGAGGGGAAGAT 59.175 55.000 0.00 0.00 0.00 2.40
5057 5285 1.885163 GCGTCGGAAAGAGGGGAAGA 61.885 60.000 0.00 0.00 35.42 2.87
5058 5286 1.448013 GCGTCGGAAAGAGGGGAAG 60.448 63.158 0.00 0.00 35.42 3.46
5059 5287 2.660802 GCGTCGGAAAGAGGGGAA 59.339 61.111 0.00 0.00 35.42 3.97
5060 5288 3.755628 CGCGTCGGAAAGAGGGGA 61.756 66.667 0.00 0.00 46.45 4.81
5071 5299 4.570663 GGGGACAGATCCGCGTCG 62.571 72.222 4.92 0.00 46.98 5.12
5077 5305 2.851071 CGAGCTCGGGGACAGATCC 61.851 68.421 28.40 0.00 45.42 3.36
5078 5306 2.725008 CGAGCTCGGGGACAGATC 59.275 66.667 28.40 0.00 35.37 2.75
5079 5307 3.532155 GCGAGCTCGGGGACAGAT 61.532 66.667 35.10 0.00 40.23 2.90
5080 5308 4.742649 AGCGAGCTCGGGGACAGA 62.743 66.667 35.10 0.00 40.23 3.41
5081 5309 4.504916 CAGCGAGCTCGGGGACAG 62.505 72.222 35.10 13.27 40.23 3.51
5098 5326 1.067199 CGAGCGGTGATGCAAAAAGC 61.067 55.000 0.00 0.00 45.96 3.51
5099 5327 1.067199 GCGAGCGGTGATGCAAAAAG 61.067 55.000 0.00 0.00 37.31 2.27
5100 5328 1.081509 GCGAGCGGTGATGCAAAAA 60.082 52.632 0.00 0.00 37.31 1.94
5101 5329 1.585267 ATGCGAGCGGTGATGCAAAA 61.585 50.000 9.41 0.00 41.22 2.44
5102 5330 1.980951 GATGCGAGCGGTGATGCAAA 61.981 55.000 9.41 0.00 41.22 3.68
5103 5331 2.436469 ATGCGAGCGGTGATGCAA 60.436 55.556 9.41 0.00 41.22 4.08
5104 5332 2.891936 GATGCGAGCGGTGATGCA 60.892 61.111 8.02 8.02 42.22 3.96
5105 5333 3.993234 CGATGCGAGCGGTGATGC 61.993 66.667 0.00 0.00 0.00 3.91
5106 5334 3.993234 GCGATGCGAGCGGTGATG 61.993 66.667 0.00 0.00 0.00 3.07
5118 5346 4.559229 TCGAGCTCTGCGGCGATG 62.559 66.667 12.98 1.33 35.98 3.84
5119 5347 4.560856 GTCGAGCTCTGCGGCGAT 62.561 66.667 12.98 0.00 40.62 4.58
5133 5361 2.024871 GGAGTCTCATCGGCGTCG 59.975 66.667 1.15 1.15 37.82 5.12
5134 5362 2.024871 CGGAGTCTCATCGGCGTC 59.975 66.667 6.85 0.00 0.00 5.19
5135 5363 3.518998 CCGGAGTCTCATCGGCGT 61.519 66.667 6.85 0.00 37.25 5.68
5136 5364 3.518998 ACCGGAGTCTCATCGGCG 61.519 66.667 9.46 0.00 46.87 6.46
5137 5365 2.105128 CACCGGAGTCTCATCGGC 59.895 66.667 9.46 0.00 46.87 5.54
5139 5367 1.313091 TGGTCACCGGAGTCTCATCG 61.313 60.000 9.46 0.00 0.00 3.84
5140 5368 1.115467 ATGGTCACCGGAGTCTCATC 58.885 55.000 9.46 0.00 0.00 2.92
5141 5369 1.573108 AATGGTCACCGGAGTCTCAT 58.427 50.000 9.46 3.50 0.00 2.90
5142 5370 1.001974 CAAATGGTCACCGGAGTCTCA 59.998 52.381 9.46 0.91 0.00 3.27
5143 5371 1.676014 CCAAATGGTCACCGGAGTCTC 60.676 57.143 9.46 0.00 0.00 3.36
5144 5372 0.324943 CCAAATGGTCACCGGAGTCT 59.675 55.000 9.46 0.00 0.00 3.24
5145 5373 2.854522 CCAAATGGTCACCGGAGTC 58.145 57.895 9.46 0.00 0.00 3.36
5156 5384 1.178534 ACAAGCCGGTGACCAAATGG 61.179 55.000 1.90 0.00 42.17 3.16
5157 5385 0.039256 CACAAGCCGGTGACCAAATG 60.039 55.000 1.90 0.00 41.32 2.32
5158 5386 1.805428 GCACAAGCCGGTGACCAAAT 61.805 55.000 1.90 0.00 41.32 2.32
5159 5387 2.485795 GCACAAGCCGGTGACCAAA 61.486 57.895 1.90 0.00 41.32 3.28
5160 5388 2.904866 GCACAAGCCGGTGACCAA 60.905 61.111 1.90 0.00 41.32 3.67
5171 5399 3.403239 GGCGAGTCCATTTGGCACAAG 62.403 57.143 0.00 0.00 38.15 3.16
5172 5400 1.523154 GGCGAGTCCATTTGGCACAA 61.523 55.000 0.00 0.00 38.15 3.33
5173 5401 1.971167 GGCGAGTCCATTTGGCACA 60.971 57.895 0.00 0.00 34.44 4.57
5174 5402 2.877691 GGCGAGTCCATTTGGCAC 59.122 61.111 0.00 0.00 34.44 5.01
5175 5403 2.745884 CGGCGAGTCCATTTGGCA 60.746 61.111 0.00 0.00 34.44 4.92
5176 5404 4.179579 GCGGCGAGTCCATTTGGC 62.180 66.667 12.98 0.00 34.44 4.52
5177 5405 2.051804 GATGCGGCGAGTCCATTTGG 62.052 60.000 12.98 0.00 34.01 3.28
5178 5406 1.353103 GATGCGGCGAGTCCATTTG 59.647 57.895 12.98 0.00 34.01 2.32
5179 5407 2.173669 CGATGCGGCGAGTCCATTT 61.174 57.895 12.98 0.00 34.01 2.32
5180 5408 2.586079 CGATGCGGCGAGTCCATT 60.586 61.111 12.98 0.00 34.01 3.16
5181 5409 3.838271 ACGATGCGGCGAGTCCAT 61.838 61.111 12.98 3.80 34.83 3.41
5182 5410 4.794439 CACGATGCGGCGAGTCCA 62.794 66.667 12.98 0.00 34.83 4.02
5183 5411 3.405592 TACACGATGCGGCGAGTCC 62.406 63.158 12.98 0.00 36.53 3.85
5184 5412 1.939785 CTACACGATGCGGCGAGTC 60.940 63.158 12.98 6.47 36.53 3.36
5185 5413 2.102357 CTACACGATGCGGCGAGT 59.898 61.111 12.98 0.79 38.55 4.18
5186 5414 2.407616 TCTACACGATGCGGCGAG 59.592 61.111 12.98 0.04 34.83 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.