Multiple sequence alignment - TraesCS5B01G126400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G126400 chr5B 100.000 2725 0 0 1 2725 230783462 230780738 0.000000e+00 5033.0
1 TraesCS5B01G126400 chr5B 97.007 802 21 2 1 799 63252397 63251596 0.000000e+00 1345.0
2 TraesCS5B01G126400 chr5B 96.210 818 25 6 1 816 686831959 686832772 0.000000e+00 1334.0
3 TraesCS5B01G126400 chr5D 94.436 1384 60 11 813 2181 215256777 215255396 0.000000e+00 2113.0
4 TraesCS5B01G126400 chr5D 88.971 544 42 5 2186 2725 215255150 215254621 0.000000e+00 656.0
5 TraesCS5B01G126400 chr5A 97.244 1016 23 2 798 1813 283111840 283110830 0.000000e+00 1716.0
6 TraesCS5B01G126400 chr5A 96.766 804 22 2 1 801 653659971 653659169 0.000000e+00 1338.0
7 TraesCS5B01G126400 chr5A 96.206 817 26 3 1 812 664389668 664388852 0.000000e+00 1332.0
8 TraesCS5B01G126400 chr5A 89.134 543 42 4 2186 2725 283110391 283109863 0.000000e+00 660.0
9 TraesCS5B01G126400 chr5A 82.097 391 22 18 1803 2191 283110812 283110468 9.550000e-75 291.0
10 TraesCS5B01G126400 chr3A 97.136 803 20 3 1 801 522043413 522044214 0.000000e+00 1352.0
11 TraesCS5B01G126400 chr2B 97.132 802 20 3 1 800 683096080 683096880 0.000000e+00 1351.0
12 TraesCS5B01G126400 chr3B 96.786 809 20 3 1 803 171120110 171120918 0.000000e+00 1345.0
13 TraesCS5B01G126400 chr3B 96.894 805 21 3 1 801 247809005 247809809 0.000000e+00 1345.0
14 TraesCS5B01G126400 chr3B 96.996 799 22 2 1 797 94487360 94488158 0.000000e+00 1341.0
15 TraesCS5B01G126400 chr1A 83.158 95 14 2 1439 1532 280603692 280603599 4.830000e-13 86.1
16 TraesCS5B01G126400 chr1D 82.105 95 15 2 1439 1532 218409923 218409830 2.250000e-11 80.5
17 TraesCS5B01G126400 chr1B 82.105 95 15 2 1439 1532 312249256 312249163 2.250000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G126400 chr5B 230780738 230783462 2724 True 5033.0 5033 100.000000 1 2725 1 chr5B.!!$R2 2724
1 TraesCS5B01G126400 chr5B 63251596 63252397 801 True 1345.0 1345 97.007000 1 799 1 chr5B.!!$R1 798
2 TraesCS5B01G126400 chr5B 686831959 686832772 813 False 1334.0 1334 96.210000 1 816 1 chr5B.!!$F1 815
3 TraesCS5B01G126400 chr5D 215254621 215256777 2156 True 1384.5 2113 91.703500 813 2725 2 chr5D.!!$R1 1912
4 TraesCS5B01G126400 chr5A 653659169 653659971 802 True 1338.0 1338 96.766000 1 801 1 chr5A.!!$R1 800
5 TraesCS5B01G126400 chr5A 664388852 664389668 816 True 1332.0 1332 96.206000 1 812 1 chr5A.!!$R2 811
6 TraesCS5B01G126400 chr5A 283109863 283111840 1977 True 889.0 1716 89.491667 798 2725 3 chr5A.!!$R3 1927
7 TraesCS5B01G126400 chr3A 522043413 522044214 801 False 1352.0 1352 97.136000 1 801 1 chr3A.!!$F1 800
8 TraesCS5B01G126400 chr2B 683096080 683096880 800 False 1351.0 1351 97.132000 1 800 1 chr2B.!!$F1 799
9 TraesCS5B01G126400 chr3B 171120110 171120918 808 False 1345.0 1345 96.786000 1 803 1 chr3B.!!$F2 802
10 TraesCS5B01G126400 chr3B 247809005 247809809 804 False 1345.0 1345 96.894000 1 801 1 chr3B.!!$F3 800
11 TraesCS5B01G126400 chr3B 94487360 94488158 798 False 1341.0 1341 96.996000 1 797 1 chr3B.!!$F1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 543 2.051334 TGGCAACTGCAGTGTAAACT 57.949 45.0 22.49 0.0 44.36 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1821 0.034059 CGCATAGAACCCAGGCCTAG 59.966 60.0 3.98 1.76 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.032956 TGTAAACAGATTACCACGTCATCT 57.967 37.500 0.00 0.00 42.74 2.90
200 202 7.715266 TCCCATGTTGATATGTTTTGATGAA 57.285 32.000 0.00 0.00 0.00 2.57
265 267 5.781210 TTGCCATGATGTTTACACTGAAA 57.219 34.783 0.00 0.00 0.00 2.69
541 543 2.051334 TGGCAACTGCAGTGTAAACT 57.949 45.000 22.49 0.00 44.36 2.66
554 556 3.692593 AGTGTAAACTTCGTGGCAACTTT 59.307 39.130 0.00 0.00 37.61 2.66
557 559 3.586100 AAACTTCGTGGCAACTTTTGT 57.414 38.095 0.00 0.00 37.61 2.83
634 644 5.878116 TCGAGACGGATTTAATGGTGAAAAT 59.122 36.000 0.00 0.00 0.00 1.82
776 787 2.069465 GATGTGCAAACGCCCACACA 62.069 55.000 4.68 4.68 43.89 3.72
925 936 2.560051 TATAACAACTCCGCCGCGCA 62.560 55.000 8.75 0.00 0.00 6.09
986 997 2.557181 CCCACCCCACCCCATTTCT 61.557 63.158 0.00 0.00 0.00 2.52
1174 1185 4.168291 CCCGCCTCTTCAGCTCCC 62.168 72.222 0.00 0.00 0.00 4.30
1780 1792 8.233868 CCATTATGTTTGTTCAATCAGTTCGTA 58.766 33.333 0.00 0.00 0.00 3.43
1783 1795 6.612247 TGTTTGTTCAATCAGTTCGTATGT 57.388 33.333 0.00 0.00 0.00 2.29
1791 1803 6.655062 TCAATCAGTTCGTATGTTGTGTTTC 58.345 36.000 0.00 0.00 0.00 2.78
1813 1825 6.968131 TCACGATGAAGTGAAAAATCTAGG 57.032 37.500 0.00 0.00 46.81 3.02
1814 1826 5.351465 TCACGATGAAGTGAAAAATCTAGGC 59.649 40.000 0.00 0.00 46.81 3.93
1815 1827 4.636206 ACGATGAAGTGAAAAATCTAGGCC 59.364 41.667 0.00 0.00 0.00 5.19
1816 1828 4.878397 CGATGAAGTGAAAAATCTAGGCCT 59.122 41.667 11.78 11.78 0.00 5.19
1817 1829 5.220739 CGATGAAGTGAAAAATCTAGGCCTG 60.221 44.000 17.99 5.60 0.00 4.85
1818 1830 4.335416 TGAAGTGAAAAATCTAGGCCTGG 58.665 43.478 17.99 14.14 0.00 4.45
1819 1831 3.372440 AGTGAAAAATCTAGGCCTGGG 57.628 47.619 17.99 8.50 0.00 4.45
1864 1904 4.058817 GACGAATTATGTTGGGCTCCTAG 58.941 47.826 0.00 0.00 0.00 3.02
1871 1911 2.764269 TGTTGGGCTCCTAGCTTCTAT 58.236 47.619 0.00 0.00 41.99 1.98
1877 1917 2.232696 GGCTCCTAGCTTCTATAGTGCC 59.767 54.545 13.84 0.00 41.99 5.01
1878 1918 2.894126 GCTCCTAGCTTCTATAGTGCCA 59.106 50.000 13.84 3.67 38.45 4.92
1896 1936 2.836262 CCAGATGCAGAGAATCAGGTC 58.164 52.381 0.00 0.00 37.82 3.85
1906 1946 3.387374 AGAGAATCAGGTCGAAGATGCAT 59.613 43.478 0.00 0.00 36.46 3.96
1942 1982 0.249657 GGTTGCATTTTGGACGCCAA 60.250 50.000 7.15 7.15 42.29 4.52
1970 2010 3.943381 TGTTGAATTGGCTATCTGCTCAG 59.057 43.478 0.00 0.00 42.39 3.35
1989 2029 3.193691 TCAGAGGCTTGTGCTTAGTCTAC 59.806 47.826 0.00 0.00 39.59 2.59
1990 2030 3.194542 CAGAGGCTTGTGCTTAGTCTACT 59.805 47.826 0.00 0.00 39.59 2.57
1991 2031 4.399618 CAGAGGCTTGTGCTTAGTCTACTA 59.600 45.833 0.00 0.00 39.59 1.82
1992 2032 5.068460 CAGAGGCTTGTGCTTAGTCTACTAT 59.932 44.000 0.00 0.00 39.59 2.12
1993 2033 5.300792 AGAGGCTTGTGCTTAGTCTACTATC 59.699 44.000 0.00 0.00 39.59 2.08
1994 2034 4.036971 AGGCTTGTGCTTAGTCTACTATCG 59.963 45.833 0.00 0.00 39.59 2.92
1995 2035 4.202030 GGCTTGTGCTTAGTCTACTATCGT 60.202 45.833 0.00 0.00 39.59 3.73
1996 2036 5.341617 GCTTGTGCTTAGTCTACTATCGTT 58.658 41.667 0.00 0.00 36.03 3.85
1997 2037 5.230306 GCTTGTGCTTAGTCTACTATCGTTG 59.770 44.000 0.00 0.00 36.03 4.10
1998 2038 6.505044 TTGTGCTTAGTCTACTATCGTTGA 57.495 37.500 0.00 0.00 0.00 3.18
1999 2039 6.694877 TGTGCTTAGTCTACTATCGTTGAT 57.305 37.500 0.00 0.00 0.00 2.57
2000 2040 6.726230 TGTGCTTAGTCTACTATCGTTGATC 58.274 40.000 0.00 0.00 0.00 2.92
2001 2041 6.317893 TGTGCTTAGTCTACTATCGTTGATCA 59.682 38.462 0.00 0.00 0.00 2.92
2002 2042 7.013369 TGTGCTTAGTCTACTATCGTTGATCAT 59.987 37.037 0.00 0.00 0.00 2.45
2003 2043 7.324856 GTGCTTAGTCTACTATCGTTGATCATG 59.675 40.741 0.00 0.00 0.00 3.07
2007 2047 7.575414 AGTCTACTATCGTTGATCATGTCTT 57.425 36.000 0.00 0.00 0.00 3.01
2008 2048 7.644490 AGTCTACTATCGTTGATCATGTCTTC 58.356 38.462 0.00 0.00 0.00 2.87
2012 2052 9.605955 CTACTATCGTTGATCATGTCTTCTTAG 57.394 37.037 0.00 0.00 0.00 2.18
2061 2115 9.920946 ATTTCTAGCTAATGGTGGAGAAAATTA 57.079 29.630 7.83 0.00 36.72 1.40
2073 2127 7.284489 TGGTGGAGAAAATTAAGCGCTATAATT 59.716 33.333 12.05 18.78 35.12 1.40
2085 2139 7.905604 AAGCGCTATAATTGTTATCAGCATA 57.094 32.000 12.05 0.00 0.00 3.14
2086 2140 7.531280 AGCGCTATAATTGTTATCAGCATAG 57.469 36.000 8.99 0.00 0.00 2.23
2087 2141 6.036517 AGCGCTATAATTGTTATCAGCATAGC 59.963 38.462 8.99 0.00 35.51 2.97
2111 2165 5.628193 CAGTACTGGTTACGTTGTAGTTCTG 59.372 44.000 15.49 3.98 35.61 3.02
2122 2176 3.804786 TGTAGTTCTGTGTCGTGGAAA 57.195 42.857 0.00 0.00 0.00 3.13
2132 2186 4.551388 TGTGTCGTGGAAATTTTATTGCC 58.449 39.130 0.00 0.00 0.00 4.52
2137 2191 5.857517 GTCGTGGAAATTTTATTGCCGTTAA 59.142 36.000 0.00 0.00 0.00 2.01
2165 2219 9.261035 ACATTTGTATTGGTTATGGGTTATCAA 57.739 29.630 0.00 0.00 0.00 2.57
2245 2548 4.890158 TCTCATGGAGAAACTTAGCACA 57.110 40.909 0.00 0.00 35.59 4.57
2246 2549 5.227569 TCTCATGGAGAAACTTAGCACAA 57.772 39.130 0.00 0.00 35.59 3.33
2249 2552 5.240891 TCATGGAGAAACTTAGCACAAGAG 58.759 41.667 5.20 0.00 0.00 2.85
2250 2553 4.008074 TGGAGAAACTTAGCACAAGAGG 57.992 45.455 5.20 0.00 0.00 3.69
2259 2562 2.638480 AGCACAAGAGGCAAGTGTTA 57.362 45.000 0.00 0.00 35.75 2.41
2269 2572 7.986889 ACAAGAGGCAAGTGTTATTTTTCAAAT 59.013 29.630 0.00 0.00 0.00 2.32
2271 2574 9.696917 AAGAGGCAAGTGTTATTTTTCAAATAG 57.303 29.630 0.00 0.00 0.00 1.73
2302 2605 8.253810 TGTGTTCTTGTGGAGATTAGAGATAAG 58.746 37.037 0.00 0.00 33.49 1.73
2331 2634 6.291585 CGCTTAGGTCAAAATGTTTTGTTGAC 60.292 38.462 15.51 7.13 46.73 3.18
2339 2642 8.819974 GTCAAAATGTTTTGTTGACATCTGAAT 58.180 29.630 15.51 0.00 46.69 2.57
2404 2707 5.643348 ACGTGTGAGCATAAATTCAGATTCA 59.357 36.000 0.00 0.00 0.00 2.57
2470 2773 6.296026 AGTTTACTTCCTGTTGCAATAGTGA 58.704 36.000 20.18 14.31 0.00 3.41
2504 2807 8.378172 TGTGATTCTGGAAACTACTACAAAAG 57.622 34.615 0.00 0.00 0.00 2.27
2506 2809 8.713271 GTGATTCTGGAAACTACTACAAAAGAG 58.287 37.037 0.00 0.00 0.00 2.85
2511 2814 8.594550 TCTGGAAACTACTACAAAAGAGCTTAT 58.405 33.333 0.00 0.00 0.00 1.73
2543 2846 5.205759 GGAATTATTTGCATTCCTCAGGG 57.794 43.478 8.49 0.00 44.52 4.45
2549 2852 1.067295 TGCATTCCTCAGGGACAAGT 58.933 50.000 0.00 0.00 42.05 3.16
2562 2865 1.271379 GGACAAGTACCACCACTGCAT 60.271 52.381 0.00 0.00 0.00 3.96
2577 2880 4.082300 CCACTGCATTGCCAATGTTACTAA 60.082 41.667 18.10 0.00 41.01 2.24
2588 2891 7.890515 TGCCAATGTTACTAATGAAATGTTCA 58.109 30.769 0.00 0.00 45.01 3.18
2603 2906 7.156000 TGAAATGTTCATCATTCAAATGCAGT 58.844 30.769 0.00 0.00 44.85 4.40
2613 2916 9.961265 CATCATTCAAATGCAGTAATAACTCAT 57.039 29.630 0.00 0.00 36.36 2.90
2630 2933 3.815401 ACTCATAACACAAGGACACAAGC 59.185 43.478 0.00 0.00 0.00 4.01
2643 2946 3.181493 GGACACAAGCTGCTTGGATTATG 60.181 47.826 36.97 28.75 44.81 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
265 267 7.534723 AATAGCTGAAACATATCATGGCAAT 57.465 32.000 0.00 0.00 33.60 3.56
459 461 9.503427 GTTTGTAGATCATGGCAATTTTAGTAC 57.497 33.333 0.00 0.00 0.00 2.73
566 576 4.511454 CCCATGTTGATATGTTTCGACGAT 59.489 41.667 0.00 0.00 33.42 3.73
776 787 1.470890 CGGAAATGTTAACGCCCACAT 59.529 47.619 0.26 0.00 35.00 3.21
1780 1792 4.574421 TCACTTCATCGTGAAACACAACAT 59.426 37.500 0.00 0.00 40.69 2.71
1791 1803 5.447818 GGCCTAGATTTTTCACTTCATCGTG 60.448 44.000 0.00 0.00 36.25 4.35
1807 1819 1.981495 GCATAGAACCCAGGCCTAGAT 59.019 52.381 3.98 0.00 0.00 1.98
1808 1820 1.424638 GCATAGAACCCAGGCCTAGA 58.575 55.000 3.98 0.00 0.00 2.43
1809 1821 0.034059 CGCATAGAACCCAGGCCTAG 59.966 60.000 3.98 1.76 0.00 3.02
1810 1822 0.397957 TCGCATAGAACCCAGGCCTA 60.398 55.000 3.98 0.00 0.00 3.93
1811 1823 1.271840 TTCGCATAGAACCCAGGCCT 61.272 55.000 0.00 0.00 33.14 5.19
1813 1825 1.334869 CATTTCGCATAGAACCCAGGC 59.665 52.381 0.00 0.00 38.83 4.85
1814 1826 1.334869 GCATTTCGCATAGAACCCAGG 59.665 52.381 0.00 0.00 41.79 4.45
1815 1827 2.032550 CAGCATTTCGCATAGAACCCAG 59.967 50.000 0.00 0.00 46.13 4.45
1816 1828 2.016318 CAGCATTTCGCATAGAACCCA 58.984 47.619 0.00 0.00 46.13 4.51
1817 1829 2.017049 ACAGCATTTCGCATAGAACCC 58.983 47.619 0.00 0.00 46.13 4.11
1818 1830 3.487544 GGAACAGCATTTCGCATAGAACC 60.488 47.826 0.00 0.00 46.13 3.62
1819 1831 3.375299 AGGAACAGCATTTCGCATAGAAC 59.625 43.478 0.00 0.00 46.13 3.01
1877 1917 2.100418 TCGACCTGATTCTCTGCATCTG 59.900 50.000 0.00 0.00 0.00 2.90
1878 1918 2.382882 TCGACCTGATTCTCTGCATCT 58.617 47.619 0.00 0.00 0.00 2.90
1896 1936 7.703621 ACCAAAGAATTTCATTATGCATCTTCG 59.296 33.333 0.19 0.00 35.03 3.79
1906 1946 6.166984 TGCAACCACCAAAGAATTTCATTA 57.833 33.333 0.00 0.00 35.03 1.90
1942 1982 5.163478 GCAGATAGCCAATTCAACAATCCTT 60.163 40.000 0.00 0.00 37.23 3.36
1970 2010 3.878160 AGTAGACTAAGCACAAGCCTC 57.122 47.619 0.00 0.00 43.56 4.70
1989 2029 9.689976 AATCTAAGAAGACATGATCAACGATAG 57.310 33.333 0.00 0.00 36.89 2.08
1991 2031 8.824781 CAAATCTAAGAAGACATGATCAACGAT 58.175 33.333 0.00 0.00 33.57 3.73
1992 2032 7.278646 CCAAATCTAAGAAGACATGATCAACGA 59.721 37.037 0.00 0.00 33.57 3.85
1993 2033 7.278646 TCCAAATCTAAGAAGACATGATCAACG 59.721 37.037 0.00 0.00 33.57 4.10
1994 2034 8.498054 TCCAAATCTAAGAAGACATGATCAAC 57.502 34.615 0.00 0.00 33.57 3.18
1995 2035 9.334947 GATCCAAATCTAAGAAGACATGATCAA 57.665 33.333 0.00 0.00 33.57 2.57
1996 2036 8.488668 TGATCCAAATCTAAGAAGACATGATCA 58.511 33.333 0.00 0.00 33.57 2.92
1997 2037 8.899427 TGATCCAAATCTAAGAAGACATGATC 57.101 34.615 0.00 0.00 33.57 2.92
1999 2039 9.993454 CTATGATCCAAATCTAAGAAGACATGA 57.007 33.333 0.00 0.00 33.57 3.07
2000 2040 8.719648 GCTATGATCCAAATCTAAGAAGACATG 58.280 37.037 0.00 0.00 33.57 3.21
2001 2041 8.435187 TGCTATGATCCAAATCTAAGAAGACAT 58.565 33.333 0.00 0.00 33.57 3.06
2002 2042 7.795047 TGCTATGATCCAAATCTAAGAAGACA 58.205 34.615 0.00 0.00 33.57 3.41
2003 2043 8.719648 CATGCTATGATCCAAATCTAAGAAGAC 58.280 37.037 0.00 0.00 33.57 3.01
2007 2047 8.985315 AAACATGCTATGATCCAAATCTAAGA 57.015 30.769 0.00 0.00 32.75 2.10
2008 2048 8.295288 GGAAACATGCTATGATCCAAATCTAAG 58.705 37.037 0.00 0.00 38.64 2.18
2012 2052 6.395426 TGGAAACATGCTATGATCCAAATC 57.605 37.500 17.11 0.00 42.40 2.17
2061 2115 6.808008 ATGCTGATAACAATTATAGCGCTT 57.192 33.333 18.68 6.25 34.07 4.68
2073 2127 4.405680 ACCAGTACTGCTATGCTGATAACA 59.594 41.667 17.86 0.00 34.50 2.41
2085 2139 3.571401 ACTACAACGTAACCAGTACTGCT 59.429 43.478 17.86 8.98 0.00 4.24
2086 2140 3.905784 ACTACAACGTAACCAGTACTGC 58.094 45.455 17.86 2.74 0.00 4.40
2087 2141 5.628193 CAGAACTACAACGTAACCAGTACTG 59.372 44.000 16.34 16.34 0.00 2.74
2111 2165 3.606346 CGGCAATAAAATTTCCACGACAC 59.394 43.478 0.00 0.00 0.00 3.67
2132 2186 8.865001 CCCATAACCAATACAAATGTTTTAACG 58.135 33.333 0.00 0.00 0.00 3.18
2147 2201 6.671779 ACCACATTTGATAACCCATAACCAAT 59.328 34.615 0.00 0.00 0.00 3.16
2148 2202 6.019748 ACCACATTTGATAACCCATAACCAA 58.980 36.000 0.00 0.00 0.00 3.67
2205 2508 8.233190 CCATGAGAATGAGTTTACAAGAAGAAC 58.767 37.037 0.00 0.00 0.00 3.01
2208 2511 7.821359 TCTCCATGAGAATGAGTTTACAAGAAG 59.179 37.037 0.00 0.00 35.59 2.85
2219 2522 6.036953 GTGCTAAGTTTCTCCATGAGAATGAG 59.963 42.308 7.32 4.59 46.20 2.90
2229 2532 3.807209 GCCTCTTGTGCTAAGTTTCTCCA 60.807 47.826 2.08 0.00 0.00 3.86
2245 2548 9.696917 CTATTTGAAAAATAACACTTGCCTCTT 57.303 29.630 0.00 0.00 0.00 2.85
2246 2549 8.860088 ACTATTTGAAAAATAACACTTGCCTCT 58.140 29.630 0.00 0.00 0.00 3.69
2249 2552 7.655732 ACCACTATTTGAAAAATAACACTTGCC 59.344 33.333 0.00 0.00 0.00 4.52
2250 2553 8.587952 ACCACTATTTGAAAAATAACACTTGC 57.412 30.769 0.00 0.00 0.00 4.01
2259 2562 9.097257 CAAGAACACAACCACTATTTGAAAAAT 57.903 29.630 0.00 0.00 0.00 1.82
2269 2572 3.452990 TCTCCACAAGAACACAACCACTA 59.547 43.478 0.00 0.00 0.00 2.74
2271 2574 2.639065 TCTCCACAAGAACACAACCAC 58.361 47.619 0.00 0.00 0.00 4.16
2346 2649 8.394971 TCTTAGTGAACATCAAATGTGAACAT 57.605 30.769 0.00 0.00 44.07 2.71
2347 2650 7.800155 TCTTAGTGAACATCAAATGTGAACA 57.200 32.000 0.00 0.00 44.07 3.18
2348 2651 9.683069 ATTTCTTAGTGAACATCAAATGTGAAC 57.317 29.630 0.00 0.00 44.07 3.18
2382 2685 7.434307 CCATTGAATCTGAATTTATGCTCACAC 59.566 37.037 0.00 0.00 0.00 3.82
2385 2688 7.885009 TCCATTGAATCTGAATTTATGCTCA 57.115 32.000 0.00 0.00 0.00 4.26
2404 2707 9.927668 CAAACACAAGTATAAAGGATTTCCATT 57.072 29.630 0.00 0.00 40.09 3.16
2419 2722 2.065899 AAGCCCAGCAAACACAAGTA 57.934 45.000 0.00 0.00 0.00 2.24
2426 2729 1.332195 AAGAGGAAAGCCCAGCAAAC 58.668 50.000 0.00 0.00 37.41 2.93
2504 2807 9.807649 AAATAATTCCATGACAACAATAAGCTC 57.192 29.630 0.00 0.00 0.00 4.09
2506 2809 8.330302 GCAAATAATTCCATGACAACAATAAGC 58.670 33.333 0.00 0.00 0.00 3.09
2511 2814 8.254178 GAATGCAAATAATTCCATGACAACAA 57.746 30.769 0.00 0.00 0.00 2.83
2543 2846 2.185004 ATGCAGTGGTGGTACTTGTC 57.815 50.000 0.00 0.00 0.00 3.18
2549 2852 0.178978 TTGGCAATGCAGTGGTGGTA 60.179 50.000 16.93 0.00 0.00 3.25
2562 2865 8.363390 TGAACATTTCATTAGTAACATTGGCAA 58.637 29.630 0.68 0.68 34.08 4.52
2599 2902 7.333423 TGTCCTTGTGTTATGAGTTATTACTGC 59.667 37.037 0.00 0.00 33.84 4.40
2603 2906 9.214957 CTTGTGTCCTTGTGTTATGAGTTATTA 57.785 33.333 0.00 0.00 0.00 0.98
2613 2916 1.946768 GCAGCTTGTGTCCTTGTGTTA 59.053 47.619 0.00 0.00 0.00 2.41
2643 2946 7.792374 TTTGAATAGCTGTATCTTGATGGAC 57.208 36.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.