Multiple sequence alignment - TraesCS5B01G125800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G125800 chr5B 100.000 4226 0 0 1 4226 228817388 228821613 0.000000e+00 7805.0
1 TraesCS5B01G125800 chr5B 86.486 111 15 0 25 135 634315076 634314966 5.740000e-24 122.0
2 TraesCS5B01G125800 chr5B 81.746 126 23 0 1 126 626168511 626168636 5.780000e-19 106.0
3 TraesCS5B01G125800 chr5A 94.202 2725 90 32 563 3255 279744340 279747028 0.000000e+00 4095.0
4 TraesCS5B01G125800 chr5A 86.424 302 27 7 3349 3639 279747040 279747338 6.820000e-83 318.0
5 TraesCS5B01G125800 chr5A 82.963 135 23 0 1 135 549940125 549939991 5.740000e-24 122.0
6 TraesCS5B01G125800 chr5A 100.000 31 0 0 3365 3395 613583742 613583712 1.640000e-04 58.4
7 TraesCS5B01G125800 chr5A 94.118 34 2 0 3362 3395 666599552 666599585 8.000000e-03 52.8
8 TraesCS5B01G125800 chr5D 94.725 1839 44 24 439 2255 214173860 214175667 0.000000e+00 2809.0
9 TraesCS5B01G125800 chr5D 97.018 1006 28 1 2263 3268 214177740 214178743 0.000000e+00 1690.0
10 TraesCS5B01G125800 chr5D 95.509 334 14 1 3870 4202 214179773 214180106 2.240000e-147 532.0
11 TraesCS5B01G125800 chr5D 91.531 307 24 2 134 439 536022337 536022032 5.050000e-114 422.0
12 TraesCS5B01G125800 chr5D 85.831 367 35 7 3349 3701 214178740 214179103 1.430000e-99 374.0
13 TraesCS5B01G125800 chr5D 89.683 126 13 0 1 126 214173734 214173859 1.220000e-35 161.0
14 TraesCS5B01G125800 chr5D 90.625 128 2 5 3748 3874 214179104 214179222 1.220000e-35 161.0
15 TraesCS5B01G125800 chr2A 92.581 310 22 1 134 442 434579959 434580268 1.080000e-120 444.0
16 TraesCS5B01G125800 chr4A 92.053 302 23 1 135 435 714825914 714826215 1.400000e-114 424.0
17 TraesCS5B01G125800 chr4A 90.000 90 8 1 1444 1532 483175101 483175190 9.600000e-22 115.0
18 TraesCS5B01G125800 chr3B 92.027 301 22 2 135 435 745226120 745226418 5.050000e-114 422.0
19 TraesCS5B01G125800 chr3B 90.506 316 28 2 125 438 473229854 473229539 2.350000e-112 416.0
20 TraesCS5B01G125800 chr3B 100.000 31 0 0 3365 3395 596975594 596975564 1.640000e-04 58.4
21 TraesCS5B01G125800 chr1B 91.531 307 25 1 133 438 458384345 458384039 5.050000e-114 422.0
22 TraesCS5B01G125800 chr1B 85.185 135 20 0 1 135 610148768 610148634 5.700000e-29 139.0
23 TraesCS5B01G125800 chr7D 91.749 303 23 2 134 435 82851132 82851433 1.820000e-113 420.0
24 TraesCS5B01G125800 chr7D 92.157 102 6 2 3261 3361 70086546 70086446 4.400000e-30 143.0
25 TraesCS5B01G125800 chr4B 91.749 303 24 1 134 435 659349095 659349397 1.820000e-113 420.0
26 TraesCS5B01G125800 chr4B 88.889 90 9 1 1444 1532 136060097 136060008 4.470000e-20 110.0
27 TraesCS5B01G125800 chr4B 97.059 34 1 0 3362 3395 619761644 619761677 1.640000e-04 58.4
28 TraesCS5B01G125800 chr7B 91.475 305 24 2 135 438 413595118 413594815 6.540000e-113 418.0
29 TraesCS5B01G125800 chr4D 94.792 96 5 0 3261 3356 507164788 507164693 2.630000e-32 150.0
30 TraesCS5B01G125800 chr4D 90.265 113 6 3 3261 3369 494801382 494801271 4.400000e-30 143.0
31 TraesCS5B01G125800 chr4D 89.381 113 7 3 3261 3369 66656132 66656021 2.050000e-28 137.0
32 TraesCS5B01G125800 chr4D 88.235 119 9 3 3255 3369 505012478 505012595 2.050000e-28 137.0
33 TraesCS5B01G125800 chr4D 89.888 89 8 1 1445 1532 96046238 96046150 3.450000e-21 113.0
34 TraesCS5B01G125800 chr6D 90.265 113 6 3 3261 3369 333950515 333950626 4.400000e-30 143.0
35 TraesCS5B01G125800 chr6D 89.381 113 7 3 3261 3369 53698042 53697931 2.050000e-28 137.0
36 TraesCS5B01G125800 chr6D 89.381 113 7 3 3261 3369 456816297 456816186 2.050000e-28 137.0
37 TraesCS5B01G125800 chr6D 100.000 28 0 0 3365 3392 29936594 29936621 8.000000e-03 52.8
38 TraesCS5B01G125800 chr3D 90.265 113 6 3 3261 3369 531382393 531382504 4.400000e-30 143.0
39 TraesCS5B01G125800 chr3D 82.353 136 23 1 1 135 584445021 584445156 2.670000e-22 117.0
40 TraesCS5B01G125800 chr3D 96.774 31 1 0 3362 3392 23150096 23150126 8.000000e-03 52.8
41 TraesCS5B01G125800 chr3A 83.969 131 21 0 1 131 631726878 631727008 4.440000e-25 126.0
42 TraesCS5B01G125800 chr2D 83.088 136 23 0 1 136 602694030 602694165 1.600000e-24 124.0
43 TraesCS5B01G125800 chr1A 80.741 135 24 1 1 135 589437997 589437865 2.080000e-18 104.0
44 TraesCS5B01G125800 chr1A 96.875 32 1 0 3365 3396 555819082 555819113 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G125800 chr5B 228817388 228821613 4225 False 7805.0 7805 100.000000 1 4226 1 chr5B.!!$F1 4225
1 TraesCS5B01G125800 chr5A 279744340 279747338 2998 False 2206.5 4095 90.313000 563 3639 2 chr5A.!!$F2 3076
2 TraesCS5B01G125800 chr5D 214173734 214180106 6372 False 954.5 2809 92.231833 1 4202 6 chr5D.!!$F1 4201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.032515 TCCCTATGAGCACCTCCGAA 60.033 55.0 0.0 0.00 0.00 4.30 F
317 318 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.0 0.0 0.00 32.21 3.66 F
744 752 0.250640 ACTGCTCTTCCTGGCTGTTG 60.251 55.0 0.0 0.00 37.33 3.33 F
2047 2071 0.594110 GTAGTCGCTAGCTAGGCCAG 59.406 60.0 22.1 0.97 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2071 0.179215 CGTTTCCGATGACTGCTTGC 60.179 55.0 0.00 0.0 35.63 4.01 R
2259 2295 0.105862 AGCGGCACACCCTACCTATA 60.106 55.0 1.45 0.0 0.00 1.31 R
2260 2296 0.981277 AAGCGGCACACCCTACCTAT 60.981 55.0 1.45 0.0 0.00 2.57 R
3805 5957 0.032515 TACCCGCTCTCCAAGATGGA 60.033 55.0 0.00 0.0 45.98 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.362120 GTTCCGACGAGGGAGGGA 60.362 66.667 0.00 0.00 41.52 4.20
51 52 1.153628 GGAGGGACAATGACGACGG 60.154 63.158 0.00 0.00 0.00 4.79
54 55 3.849953 GGACAATGACGACGGCGC 61.850 66.667 12.58 3.84 42.48 6.53
86 87 5.292101 GCTCACTTCAATGCTTATAGTCGTT 59.708 40.000 0.00 0.00 0.00 3.85
102 103 2.353889 GTCGTTGCTAGATGGTCTACGA 59.646 50.000 0.00 0.00 0.00 3.43
110 111 4.320641 GCTAGATGGTCTACGAATCTGGAC 60.321 50.000 0.00 0.00 32.35 4.02
111 112 2.959707 AGATGGTCTACGAATCTGGACC 59.040 50.000 0.00 0.00 45.86 4.46
130 131 9.640952 TCTGGACCTAATTTTTATTATTCCTGG 57.359 33.333 0.00 0.00 0.00 4.45
131 132 9.421399 CTGGACCTAATTTTTATTATTCCTGGT 57.579 33.333 0.00 0.00 0.00 4.00
132 133 9.196139 TGGACCTAATTTTTATTATTCCTGGTG 57.804 33.333 0.00 0.00 0.00 4.17
133 134 9.197306 GGACCTAATTTTTATTATTCCTGGTGT 57.803 33.333 0.00 0.00 0.00 4.16
162 163 8.854979 TTTTTGAACATCAATACAGACACAAG 57.145 30.769 0.00 0.00 36.11 3.16
163 164 5.611796 TGAACATCAATACAGACACAAGC 57.388 39.130 0.00 0.00 0.00 4.01
164 165 5.062528 TGAACATCAATACAGACACAAGCA 58.937 37.500 0.00 0.00 0.00 3.91
165 166 5.049474 TGAACATCAATACAGACACAAGCAC 60.049 40.000 0.00 0.00 0.00 4.40
166 167 4.645535 ACATCAATACAGACACAAGCACT 58.354 39.130 0.00 0.00 0.00 4.40
167 168 4.692625 ACATCAATACAGACACAAGCACTC 59.307 41.667 0.00 0.00 0.00 3.51
168 169 4.335400 TCAATACAGACACAAGCACTCA 57.665 40.909 0.00 0.00 0.00 3.41
169 170 4.898320 TCAATACAGACACAAGCACTCAT 58.102 39.130 0.00 0.00 0.00 2.90
170 171 6.036577 TCAATACAGACACAAGCACTCATA 57.963 37.500 0.00 0.00 0.00 2.15
171 172 6.643388 TCAATACAGACACAAGCACTCATAT 58.357 36.000 0.00 0.00 0.00 1.78
172 173 7.781056 TCAATACAGACACAAGCACTCATATA 58.219 34.615 0.00 0.00 0.00 0.86
173 174 7.706607 TCAATACAGACACAAGCACTCATATAC 59.293 37.037 0.00 0.00 0.00 1.47
174 175 5.405935 ACAGACACAAGCACTCATATACA 57.594 39.130 0.00 0.00 0.00 2.29
175 176 5.793817 ACAGACACAAGCACTCATATACAA 58.206 37.500 0.00 0.00 0.00 2.41
176 177 5.639506 ACAGACACAAGCACTCATATACAAC 59.360 40.000 0.00 0.00 0.00 3.32
177 178 4.864806 AGACACAAGCACTCATATACAACG 59.135 41.667 0.00 0.00 0.00 4.10
178 179 3.370978 ACACAAGCACTCATATACAACGC 59.629 43.478 0.00 0.00 0.00 4.84
179 180 3.370672 CACAAGCACTCATATACAACGCA 59.629 43.478 0.00 0.00 0.00 5.24
180 181 4.034394 CACAAGCACTCATATACAACGCAT 59.966 41.667 0.00 0.00 0.00 4.73
181 182 5.234116 CACAAGCACTCATATACAACGCATA 59.766 40.000 0.00 0.00 0.00 3.14
182 183 5.234329 ACAAGCACTCATATACAACGCATAC 59.766 40.000 0.00 0.00 0.00 2.39
183 184 4.944048 AGCACTCATATACAACGCATACA 58.056 39.130 0.00 0.00 0.00 2.29
184 185 4.745125 AGCACTCATATACAACGCATACAC 59.255 41.667 0.00 0.00 0.00 2.90
185 186 4.745125 GCACTCATATACAACGCATACACT 59.255 41.667 0.00 0.00 0.00 3.55
186 187 5.107837 GCACTCATATACAACGCATACACTC 60.108 44.000 0.00 0.00 0.00 3.51
187 188 5.977129 CACTCATATACAACGCATACACTCA 59.023 40.000 0.00 0.00 0.00 3.41
188 189 6.642540 CACTCATATACAACGCATACACTCAT 59.357 38.462 0.00 0.00 0.00 2.90
189 190 6.863645 ACTCATATACAACGCATACACTCATC 59.136 38.462 0.00 0.00 0.00 2.92
190 191 6.156519 TCATATACAACGCATACACTCATCC 58.843 40.000 0.00 0.00 0.00 3.51
191 192 2.024176 ACAACGCATACACTCATCCC 57.976 50.000 0.00 0.00 0.00 3.85
192 193 1.555075 ACAACGCATACACTCATCCCT 59.445 47.619 0.00 0.00 0.00 4.20
193 194 2.764010 ACAACGCATACACTCATCCCTA 59.236 45.455 0.00 0.00 0.00 3.53
194 195 3.388024 ACAACGCATACACTCATCCCTAT 59.612 43.478 0.00 0.00 0.00 2.57
195 196 3.667497 ACGCATACACTCATCCCTATG 57.333 47.619 0.00 0.00 0.00 2.23
196 197 3.230976 ACGCATACACTCATCCCTATGA 58.769 45.455 0.00 0.00 39.87 2.15
197 198 3.641436 ACGCATACACTCATCCCTATGAA 59.359 43.478 0.00 0.00 41.57 2.57
198 199 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
199 200 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
200 201 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
201 202 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
202 203 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
203 204 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
204 205 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
205 206 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
206 207 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
207 208 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
208 209 1.358725 CCCTATGAACGCACACACGG 61.359 60.000 0.00 0.00 37.37 4.94
209 210 1.358725 CCTATGAACGCACACACGGG 61.359 60.000 0.00 0.00 37.37 5.28
210 211 1.966493 CTATGAACGCACACACGGGC 61.966 60.000 0.00 0.00 37.37 6.13
211 212 2.717139 TATGAACGCACACACGGGCA 62.717 55.000 0.00 0.00 37.37 5.36
212 213 4.307908 GAACGCACACACGGGCAC 62.308 66.667 0.00 0.00 37.37 5.01
213 214 4.849310 AACGCACACACGGGCACT 62.849 61.111 0.00 0.00 37.37 4.40
215 216 4.969196 CGCACACACGGGCACTCT 62.969 66.667 0.00 0.00 0.00 3.24
216 217 2.342279 GCACACACGGGCACTCTA 59.658 61.111 0.00 0.00 0.00 2.43
217 218 1.079127 GCACACACGGGCACTCTAT 60.079 57.895 0.00 0.00 0.00 1.98
218 219 1.084370 GCACACACGGGCACTCTATC 61.084 60.000 0.00 0.00 0.00 2.08
219 220 0.460284 CACACACGGGCACTCTATCC 60.460 60.000 0.00 0.00 0.00 2.59
220 221 1.144057 CACACGGGCACTCTATCCC 59.856 63.158 0.00 0.00 39.17 3.85
221 222 1.001760 ACACGGGCACTCTATCCCT 59.998 57.895 0.00 0.00 40.41 4.20
222 223 0.260816 ACACGGGCACTCTATCCCTA 59.739 55.000 0.00 0.00 40.41 3.53
223 224 1.133136 ACACGGGCACTCTATCCCTAT 60.133 52.381 0.00 0.00 40.41 2.57
224 225 1.273606 CACGGGCACTCTATCCCTATG 59.726 57.143 0.00 0.00 40.41 2.23
225 226 1.147191 ACGGGCACTCTATCCCTATGA 59.853 52.381 0.00 0.00 40.41 2.15
226 227 1.821753 CGGGCACTCTATCCCTATGAG 59.178 57.143 0.00 0.00 40.41 2.90
227 228 1.552792 GGGCACTCTATCCCTATGAGC 59.447 57.143 0.00 0.00 39.46 4.26
228 229 2.251818 GGCACTCTATCCCTATGAGCA 58.748 52.381 0.00 0.00 0.00 4.26
229 230 2.028567 GGCACTCTATCCCTATGAGCAC 60.029 54.545 0.00 0.00 0.00 4.40
230 231 2.028567 GCACTCTATCCCTATGAGCACC 60.029 54.545 0.00 0.00 0.00 5.01
231 232 3.505386 CACTCTATCCCTATGAGCACCT 58.495 50.000 0.00 0.00 0.00 4.00
232 233 3.509575 CACTCTATCCCTATGAGCACCTC 59.490 52.174 0.00 0.00 0.00 3.85
233 234 3.096092 CTCTATCCCTATGAGCACCTCC 58.904 54.545 0.00 0.00 0.00 4.30
234 235 1.821753 CTATCCCTATGAGCACCTCCG 59.178 57.143 0.00 0.00 0.00 4.63
235 236 0.188587 ATCCCTATGAGCACCTCCGA 59.811 55.000 0.00 0.00 0.00 4.55
236 237 0.032515 TCCCTATGAGCACCTCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
237 238 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
238 239 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
239 240 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
240 241 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
241 242 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
242 243 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
243 244 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
244 245 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
245 246 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
246 247 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
247 248 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
248 249 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
249 250 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
250 251 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
251 252 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
252 253 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
253 254 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
254 255 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
255 256 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
256 257 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
257 258 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
258 259 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
259 260 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
260 261 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
261 262 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
262 263 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
263 264 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
264 265 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
265 266 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
266 267 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
267 268 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
268 269 5.587844 GCCGGCATATCATCTTGAGATTTAT 59.412 40.000 24.80 0.00 31.21 1.40
269 270 6.457934 GCCGGCATATCATCTTGAGATTTATG 60.458 42.308 24.80 12.28 34.43 1.90
270 271 6.820152 CCGGCATATCATCTTGAGATTTATGA 59.180 38.462 17.06 5.24 33.82 2.15
271 272 7.335171 CCGGCATATCATCTTGAGATTTATGAA 59.665 37.037 17.06 0.00 33.82 2.57
272 273 8.388853 CGGCATATCATCTTGAGATTTATGAAG 58.611 37.037 17.06 10.18 33.82 3.02
273 274 9.228949 GGCATATCATCTTGAGATTTATGAAGT 57.771 33.333 17.06 0.00 33.82 3.01
283 284 9.202273 CTTGAGATTTATGAAGTCACTATAGGC 57.798 37.037 4.43 0.00 0.00 3.93
284 285 7.371159 TGAGATTTATGAAGTCACTATAGGCG 58.629 38.462 4.43 0.00 0.00 5.52
285 286 6.159988 AGATTTATGAAGTCACTATAGGCGC 58.840 40.000 0.00 0.00 0.00 6.53
286 287 5.531122 TTTATGAAGTCACTATAGGCGCT 57.469 39.130 7.64 0.00 0.00 5.92
287 288 5.531122 TTATGAAGTCACTATAGGCGCTT 57.469 39.130 7.64 0.52 0.00 4.68
288 289 3.887621 TGAAGTCACTATAGGCGCTTT 57.112 42.857 7.64 0.00 0.00 3.51
289 290 3.521560 TGAAGTCACTATAGGCGCTTTG 58.478 45.455 7.64 0.00 0.00 2.77
290 291 3.056107 TGAAGTCACTATAGGCGCTTTGT 60.056 43.478 7.64 0.00 0.00 2.83
291 292 3.166489 AGTCACTATAGGCGCTTTGTC 57.834 47.619 7.64 0.00 0.00 3.18
292 293 1.852895 GTCACTATAGGCGCTTTGTCG 59.147 52.381 7.64 0.00 0.00 4.35
293 294 1.475280 TCACTATAGGCGCTTTGTCGT 59.525 47.619 7.64 0.00 0.00 4.34
294 295 1.852895 CACTATAGGCGCTTTGTCGTC 59.147 52.381 7.64 0.00 0.00 4.20
295 296 1.121240 CTATAGGCGCTTTGTCGTCG 58.879 55.000 7.64 0.00 39.34 5.12
296 297 0.734309 TATAGGCGCTTTGTCGTCGA 59.266 50.000 7.64 0.00 39.34 4.20
297 298 0.801067 ATAGGCGCTTTGTCGTCGAC 60.801 55.000 18.51 18.51 39.34 4.20
298 299 4.117372 GGCGCTTTGTCGTCGACG 62.117 66.667 31.30 31.30 41.45 5.12
299 300 4.117372 GCGCTTTGTCGTCGACGG 62.117 66.667 35.05 20.74 40.29 4.79
300 301 2.427905 CGCTTTGTCGTCGACGGA 60.428 61.111 35.05 20.69 40.29 4.69
301 302 2.012414 CGCTTTGTCGTCGACGGAA 61.012 57.895 35.05 24.82 40.29 4.30
302 303 1.542272 CGCTTTGTCGTCGACGGAAA 61.542 55.000 35.05 28.90 40.29 3.13
303 304 0.111398 GCTTTGTCGTCGACGGAAAC 60.111 55.000 35.05 26.09 40.29 2.78
316 317 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
317 318 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
318 319 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
319 320 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
320 321 1.645710 AACGTCTCCTCCCACTGAAT 58.354 50.000 0.00 0.00 0.00 2.57
321 322 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
322 323 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
323 324 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
324 325 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
325 326 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
326 327 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
327 328 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
328 329 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
339 340 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
340 341 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
341 342 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
342 343 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
343 344 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
344 345 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
345 346 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
346 347 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
347 348 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
348 349 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
349 350 5.816919 TCGCCGAAAATCCTGAAATAAATC 58.183 37.500 0.00 0.00 0.00 2.17
350 351 4.976116 CGCCGAAAATCCTGAAATAAATCC 59.024 41.667 0.00 0.00 0.00 3.01
351 352 5.449862 CGCCGAAAATCCTGAAATAAATCCA 60.450 40.000 0.00 0.00 0.00 3.41
352 353 5.979517 GCCGAAAATCCTGAAATAAATCCAG 59.020 40.000 0.00 0.00 0.00 3.86
353 354 6.183360 GCCGAAAATCCTGAAATAAATCCAGA 60.183 38.462 0.00 0.00 0.00 3.86
354 355 7.630513 GCCGAAAATCCTGAAATAAATCCAGAA 60.631 37.037 0.00 0.00 0.00 3.02
355 356 8.250332 CCGAAAATCCTGAAATAAATCCAGAAA 58.750 33.333 0.00 0.00 0.00 2.52
356 357 9.807649 CGAAAATCCTGAAATAAATCCAGAAAT 57.192 29.630 0.00 0.00 0.00 2.17
363 364 8.971321 CCTGAAATAAATCCAGAAATAAATGCG 58.029 33.333 0.00 0.00 0.00 4.73
364 365 9.734620 CTGAAATAAATCCAGAAATAAATGCGA 57.265 29.630 0.00 0.00 0.00 5.10
365 366 9.734620 TGAAATAAATCCAGAAATAAATGCGAG 57.265 29.630 0.00 0.00 0.00 5.03
366 367 8.579682 AAATAAATCCAGAAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
367 368 5.581126 AAATCCAGAAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
368 369 5.779529 AATCCAGAAATAAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
369 370 4.818534 TCCAGAAATAAATGCGAGCATC 57.181 40.909 11.26 0.00 35.31 3.91
370 371 4.198530 TCCAGAAATAAATGCGAGCATCA 58.801 39.130 11.26 3.11 35.31 3.07
371 372 4.274214 TCCAGAAATAAATGCGAGCATCAG 59.726 41.667 11.26 0.00 35.31 2.90
372 373 4.274214 CCAGAAATAAATGCGAGCATCAGA 59.726 41.667 11.26 0.40 35.31 3.27
373 374 5.220912 CCAGAAATAAATGCGAGCATCAGAA 60.221 40.000 11.26 0.00 35.31 3.02
374 375 6.436261 CAGAAATAAATGCGAGCATCAGAAT 58.564 36.000 11.26 0.63 35.31 2.40
375 376 6.916387 CAGAAATAAATGCGAGCATCAGAATT 59.084 34.615 11.26 4.31 35.31 2.17
376 377 7.434307 CAGAAATAAATGCGAGCATCAGAATTT 59.566 33.333 11.26 13.11 35.31 1.82
377 378 7.434307 AGAAATAAATGCGAGCATCAGAATTTG 59.566 33.333 11.26 0.00 35.31 2.32
378 379 4.707030 AAATGCGAGCATCAGAATTTGA 57.293 36.364 11.26 0.00 40.85 2.69
379 380 4.707030 AATGCGAGCATCAGAATTTGAA 57.293 36.364 11.26 0.00 39.77 2.69
380 381 3.476295 TGCGAGCATCAGAATTTGAAC 57.524 42.857 0.00 0.00 39.77 3.18
381 382 2.162208 TGCGAGCATCAGAATTTGAACC 59.838 45.455 0.00 0.00 39.77 3.62
382 383 2.478539 GCGAGCATCAGAATTTGAACCC 60.479 50.000 0.00 0.00 39.77 4.11
383 384 3.012518 CGAGCATCAGAATTTGAACCCT 58.987 45.455 0.00 0.00 39.77 4.34
384 385 3.181503 CGAGCATCAGAATTTGAACCCTG 60.182 47.826 0.00 0.00 39.77 4.45
385 386 4.012374 GAGCATCAGAATTTGAACCCTGA 58.988 43.478 0.00 0.00 39.77 3.86
386 387 4.607239 AGCATCAGAATTTGAACCCTGAT 58.393 39.130 0.00 0.00 44.48 2.90
415 416 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
416 417 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
417 418 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
418 419 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
419 420 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
420 421 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
421 422 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
422 423 3.200825 CACAGTCCCTCTAACCATCCAAT 59.799 47.826 0.00 0.00 0.00 3.16
423 424 3.456277 ACAGTCCCTCTAACCATCCAATC 59.544 47.826 0.00 0.00 0.00 2.67
424 425 3.455910 CAGTCCCTCTAACCATCCAATCA 59.544 47.826 0.00 0.00 0.00 2.57
425 426 3.456277 AGTCCCTCTAACCATCCAATCAC 59.544 47.826 0.00 0.00 0.00 3.06
426 427 3.199946 GTCCCTCTAACCATCCAATCACA 59.800 47.826 0.00 0.00 0.00 3.58
427 428 3.455910 TCCCTCTAACCATCCAATCACAG 59.544 47.826 0.00 0.00 0.00 3.66
428 429 3.434167 CCCTCTAACCATCCAATCACAGG 60.434 52.174 0.00 0.00 0.00 4.00
429 430 3.200825 CCTCTAACCATCCAATCACAGGT 59.799 47.826 0.00 0.00 0.00 4.00
430 431 4.324563 CCTCTAACCATCCAATCACAGGTT 60.325 45.833 0.00 0.00 44.23 3.50
431 432 4.588899 TCTAACCATCCAATCACAGGTTG 58.411 43.478 0.00 0.00 42.19 3.77
432 433 2.220653 ACCATCCAATCACAGGTTGG 57.779 50.000 2.61 2.61 46.76 3.77
433 434 2.220653 CCATCCAATCACAGGTTGGT 57.779 50.000 8.75 0.00 45.05 3.67
434 435 2.528564 CCATCCAATCACAGGTTGGTT 58.471 47.619 8.75 0.00 45.05 3.67
435 436 2.899256 CCATCCAATCACAGGTTGGTTT 59.101 45.455 8.75 0.00 45.05 3.27
436 437 3.306225 CCATCCAATCACAGGTTGGTTTG 60.306 47.826 8.75 7.94 45.05 2.93
437 438 1.686052 TCCAATCACAGGTTGGTTTGC 59.314 47.619 8.75 0.00 45.05 3.68
440 441 1.620822 ATCACAGGTTGGTTTGCTCC 58.379 50.000 0.00 0.00 0.00 4.70
448 449 3.443681 AGGTTGGTTTGCTCCGATATTTG 59.556 43.478 0.00 0.00 0.00 2.32
458 459 5.555966 TGCTCCGATATTTGTTATATGGCA 58.444 37.500 0.00 0.00 0.00 4.92
472 473 9.970395 TTGTTATATGGCATGATTGAAAAGATC 57.030 29.630 10.98 0.00 0.00 2.75
473 474 9.134055 TGTTATATGGCATGATTGAAAAGATCA 57.866 29.630 10.98 0.00 37.86 2.92
494 498 5.352284 TCAAAAAGTTTTTCTGGCGCAATA 58.648 33.333 10.83 0.00 0.00 1.90
495 499 5.812642 TCAAAAAGTTTTTCTGGCGCAATAA 59.187 32.000 10.83 0.00 0.00 1.40
564 569 2.014857 TTCTCCGACTCGGTGATACTG 58.985 52.381 20.07 3.99 46.35 2.74
744 752 0.250640 ACTGCTCTTCCTGGCTGTTG 60.251 55.000 0.00 0.00 37.33 3.33
929 937 3.657350 GGGCCAGGGCAAGGTGTA 61.657 66.667 16.36 0.00 44.11 2.90
939 947 2.354805 GGGCAAGGTGTAGTACTTGAGG 60.355 54.545 0.00 0.00 45.22 3.86
944 952 2.382649 AGGTGTAGTACTTGAGGAGGGT 59.617 50.000 0.00 0.00 0.00 4.34
1408 1419 1.530013 GATGCAAACCTGTGCTGGCT 61.530 55.000 0.00 0.00 45.17 4.75
1409 1420 1.530013 ATGCAAACCTGTGCTGGCTC 61.530 55.000 0.00 0.00 45.17 4.70
1410 1421 2.924105 GCAAACCTGTGCTGGCTCC 61.924 63.158 0.00 0.00 41.51 4.70
1534 1550 4.282703 ACTCCGCCGTCAGGTTATAATATT 59.717 41.667 0.00 0.00 40.50 1.28
1577 1593 9.570468 TCGTATAAAACCATCTCTCTGTATACT 57.430 33.333 4.17 0.00 0.00 2.12
1624 1640 8.730680 CCAGCTTAATGTAGTGTTGTCTTAATT 58.269 33.333 0.00 0.00 0.00 1.40
1703 1720 4.052159 ACGAGAGCATGAAGAAGGTATG 57.948 45.455 0.00 0.00 0.00 2.39
2003 2027 5.674569 GCCACATGACTGCACTTTACTATTG 60.675 44.000 0.00 0.00 0.00 1.90
2004 2028 5.412594 CCACATGACTGCACTTTACTATTGT 59.587 40.000 0.00 0.00 0.00 2.71
2005 2029 6.593770 CCACATGACTGCACTTTACTATTGTA 59.406 38.462 0.00 0.00 0.00 2.41
2023 2047 2.651334 TGTAGTAGTACCCCAGTCCAGT 59.349 50.000 5.26 0.00 0.00 4.00
2024 2048 3.851976 TGTAGTAGTACCCCAGTCCAGTA 59.148 47.826 5.26 0.00 0.00 2.74
2025 2049 3.378861 AGTAGTACCCCAGTCCAGTAC 57.621 52.381 0.00 0.00 37.27 2.73
2047 2071 0.594110 GTAGTCGCTAGCTAGGCCAG 59.406 60.000 22.10 0.97 0.00 4.85
2255 2291 2.158623 TCATGCCCACAAGACTCAAAGT 60.159 45.455 0.00 0.00 0.00 2.66
2259 2295 2.551071 GCCCACAAGACTCAAAGTAGCT 60.551 50.000 0.00 0.00 0.00 3.32
2260 2296 3.306780 GCCCACAAGACTCAAAGTAGCTA 60.307 47.826 0.00 0.00 0.00 3.32
2303 4404 0.034337 AGACGAGCTTTTTGCCGGTA 59.966 50.000 1.90 0.00 44.23 4.02
2317 4418 1.191535 CCGGTATGTCCAGGTCTTCA 58.808 55.000 0.00 0.00 35.57 3.02
2332 4433 3.127721 GGTCTTCAGAGCTTTACCAATGC 59.872 47.826 0.00 0.00 39.31 3.56
2334 4435 2.877097 TCAGAGCTTTACCAATGCCA 57.123 45.000 0.00 0.00 32.41 4.92
2420 4521 2.801077 TCCTGACTAGTCGTGGATGA 57.199 50.000 24.75 10.89 32.58 2.92
2493 4594 2.417787 GGTGGTAACGTCTATGGACACC 60.418 54.545 10.08 9.75 42.21 4.16
2656 4757 2.115052 ATCCCAACGCCAGCAACA 59.885 55.556 0.00 0.00 0.00 3.33
2745 4846 2.746277 GTCACCGACCCACATGGC 60.746 66.667 0.00 0.00 37.83 4.40
3268 5380 4.462483 TCCGGTTTTTACTCCGTATGTACT 59.538 41.667 0.00 0.00 44.51 2.73
3269 5381 4.800471 CCGGTTTTTACTCCGTATGTACTC 59.200 45.833 0.00 0.00 44.51 2.59
3270 5382 5.401550 CGGTTTTTACTCCGTATGTACTCA 58.598 41.667 0.00 0.00 41.58 3.41
3271 5383 5.287035 CGGTTTTTACTCCGTATGTACTCAC 59.713 44.000 0.00 0.00 41.58 3.51
3272 5384 6.393171 GGTTTTTACTCCGTATGTACTCACT 58.607 40.000 0.00 0.00 0.00 3.41
3273 5385 6.529477 GGTTTTTACTCCGTATGTACTCACTC 59.471 42.308 0.00 0.00 0.00 3.51
3274 5386 5.824904 TTTACTCCGTATGTACTCACTCC 57.175 43.478 0.00 0.00 0.00 3.85
3275 5387 2.286872 ACTCCGTATGTACTCACTCCG 58.713 52.381 0.00 0.00 0.00 4.63
3276 5388 2.286872 CTCCGTATGTACTCACTCCGT 58.713 52.381 0.00 0.00 0.00 4.69
3277 5389 2.681848 CTCCGTATGTACTCACTCCGTT 59.318 50.000 0.00 0.00 0.00 4.44
3278 5390 2.679837 TCCGTATGTACTCACTCCGTTC 59.320 50.000 0.00 0.00 0.00 3.95
3279 5391 2.681848 CCGTATGTACTCACTCCGTTCT 59.318 50.000 0.00 0.00 0.00 3.01
3280 5392 3.873361 CCGTATGTACTCACTCCGTTCTA 59.127 47.826 0.00 0.00 0.00 2.10
3281 5393 4.333649 CCGTATGTACTCACTCCGTTCTAA 59.666 45.833 0.00 0.00 0.00 2.10
3282 5394 5.163723 CCGTATGTACTCACTCCGTTCTAAA 60.164 44.000 0.00 0.00 0.00 1.85
3283 5395 6.459298 CCGTATGTACTCACTCCGTTCTAAAT 60.459 42.308 0.00 0.00 0.00 1.40
3284 5396 6.971184 CGTATGTACTCACTCCGTTCTAAATT 59.029 38.462 0.00 0.00 0.00 1.82
3285 5397 8.124823 CGTATGTACTCACTCCGTTCTAAATTA 58.875 37.037 0.00 0.00 0.00 1.40
3286 5398 9.230932 GTATGTACTCACTCCGTTCTAAATTAC 57.769 37.037 0.00 0.00 0.00 1.89
3287 5399 7.458409 TGTACTCACTCCGTTCTAAATTACT 57.542 36.000 0.00 0.00 0.00 2.24
3288 5400 7.533426 TGTACTCACTCCGTTCTAAATTACTC 58.467 38.462 0.00 0.00 0.00 2.59
3289 5401 5.638783 ACTCACTCCGTTCTAAATTACTCG 58.361 41.667 0.00 0.00 0.00 4.18
3290 5402 5.182760 ACTCACTCCGTTCTAAATTACTCGT 59.817 40.000 0.00 0.00 0.00 4.18
3291 5403 5.634896 TCACTCCGTTCTAAATTACTCGTC 58.365 41.667 0.00 0.00 0.00 4.20
3292 5404 4.494764 CACTCCGTTCTAAATTACTCGTCG 59.505 45.833 0.00 0.00 0.00 5.12
3293 5405 4.154918 ACTCCGTTCTAAATTACTCGTCGT 59.845 41.667 0.00 0.00 0.00 4.34
3294 5406 4.406069 TCCGTTCTAAATTACTCGTCGTG 58.594 43.478 0.00 0.00 0.00 4.35
3295 5407 3.545078 CCGTTCTAAATTACTCGTCGTGG 59.455 47.826 0.00 0.00 0.00 4.94
3296 5408 4.161333 CGTTCTAAATTACTCGTCGTGGT 58.839 43.478 0.00 0.00 0.00 4.16
3297 5409 4.618489 CGTTCTAAATTACTCGTCGTGGTT 59.382 41.667 0.00 0.00 0.00 3.67
3298 5410 5.117592 CGTTCTAAATTACTCGTCGTGGTTT 59.882 40.000 0.00 0.79 0.00 3.27
3299 5411 6.346040 CGTTCTAAATTACTCGTCGTGGTTTT 60.346 38.462 0.00 0.00 0.00 2.43
3300 5412 7.148983 CGTTCTAAATTACTCGTCGTGGTTTTA 60.149 37.037 0.00 0.48 0.00 1.52
3301 5413 7.801547 TCTAAATTACTCGTCGTGGTTTTAG 57.198 36.000 13.72 13.72 31.25 1.85
3302 5414 7.370383 TCTAAATTACTCGTCGTGGTTTTAGT 58.630 34.615 16.53 6.04 31.59 2.24
3303 5415 6.849588 AAATTACTCGTCGTGGTTTTAGTT 57.150 33.333 0.00 0.00 0.00 2.24
3304 5416 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
3305 5417 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3306 5418 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3307 5419 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3308 5420 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3309 5421 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3310 5422 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3311 5423 7.011295 ACTCGTCGTGGTTTTAGTTCAAATTTA 59.989 33.333 0.00 0.00 0.00 1.40
3312 5424 7.692088 TCGTCGTGGTTTTAGTTCAAATTTAA 58.308 30.769 0.00 0.00 0.00 1.52
3313 5425 8.180267 TCGTCGTGGTTTTAGTTCAAATTTAAA 58.820 29.630 0.00 0.00 0.00 1.52
3314 5426 8.254470 CGTCGTGGTTTTAGTTCAAATTTAAAC 58.746 33.333 0.00 0.00 0.00 2.01
3315 5427 9.292846 GTCGTGGTTTTAGTTCAAATTTAAACT 57.707 29.630 11.45 11.45 39.07 2.66
3327 5439 9.968620 GTTCAAATTTAAACTAAAATCACGACG 57.031 29.630 0.00 0.00 0.00 5.12
3328 5440 9.932699 TTCAAATTTAAACTAAAATCACGACGA 57.067 25.926 0.00 0.00 0.00 4.20
3329 5441 9.588774 TCAAATTTAAACTAAAATCACGACGAG 57.411 29.630 0.00 0.00 0.00 4.18
3330 5442 9.377383 CAAATTTAAACTAAAATCACGACGAGT 57.623 29.630 0.00 0.00 0.00 4.18
3336 5448 8.928844 AAACTAAAATCACGACGAGTAATTTG 57.071 30.769 0.00 0.00 0.00 2.32
3337 5449 7.057149 ACTAAAATCACGACGAGTAATTTGG 57.943 36.000 0.00 2.53 0.00 3.28
3338 5450 6.869913 ACTAAAATCACGACGAGTAATTTGGA 59.130 34.615 0.00 0.00 0.00 3.53
3339 5451 6.548441 AAAATCACGACGAGTAATTTGGAA 57.452 33.333 0.00 0.00 0.00 3.53
3340 5452 5.526010 AATCACGACGAGTAATTTGGAAC 57.474 39.130 0.00 0.00 0.00 3.62
3341 5453 2.981805 TCACGACGAGTAATTTGGAACG 59.018 45.455 0.00 0.00 0.00 3.95
3342 5454 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
3343 5455 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
3344 5456 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3345 5457 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3346 5458 2.564062 ACGAGTAATTTGGAACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
3347 5459 3.007182 ACGAGTAATTTGGAACGGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
3348 5460 3.617263 CGAGTAATTTGGAACGGAGGAAG 59.383 47.826 0.00 0.00 0.00 3.46
3349 5461 4.576879 GAGTAATTTGGAACGGAGGAAGT 58.423 43.478 0.00 0.00 0.00 3.01
3350 5462 5.622914 CGAGTAATTTGGAACGGAGGAAGTA 60.623 44.000 0.00 0.00 0.00 2.24
3351 5463 6.309389 AGTAATTTGGAACGGAGGAAGTAT 57.691 37.500 0.00 0.00 0.00 2.12
3415 5527 6.867816 TCGTATTTACCTCGCAAAAGAAACTA 59.132 34.615 0.00 0.00 0.00 2.24
3416 5528 7.384660 TCGTATTTACCTCGCAAAAGAAACTAA 59.615 33.333 0.00 0.00 0.00 2.24
3510 5622 5.361135 TTCATGGCGCATCTAACAATATG 57.639 39.130 10.83 0.00 0.00 1.78
3511 5623 4.640364 TCATGGCGCATCTAACAATATGA 58.360 39.130 10.83 0.00 0.00 2.15
3616 5768 9.985730 TGCAGAATAAAATTGATCAAAGAGTTT 57.014 25.926 13.09 12.31 0.00 2.66
3658 5810 3.815401 AGCTTACTTCGACACAGCAAATT 59.185 39.130 7.58 0.00 32.58 1.82
3677 5829 6.438763 CAAATTTTTGTCGGAGAACTTAGCT 58.561 36.000 0.00 0.00 39.69 3.32
3684 5836 5.682659 TGTCGGAGAACTTAGCTAGTATCT 58.317 41.667 0.00 0.00 39.69 1.98
3685 5837 5.759273 TGTCGGAGAACTTAGCTAGTATCTC 59.241 44.000 17.10 17.10 39.69 2.75
3693 5845 1.723288 AGCTAGTATCTCCCCCAAGC 58.277 55.000 0.00 0.00 0.00 4.01
3710 5862 3.160872 GCTTTGTAGCACTCCCTCC 57.839 57.895 0.00 0.00 46.95 4.30
3711 5863 0.741221 GCTTTGTAGCACTCCCTCCG 60.741 60.000 0.00 0.00 46.95 4.63
3712 5864 0.608640 CTTTGTAGCACTCCCTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
3713 5865 0.606604 TTTGTAGCACTCCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
3714 5866 1.255667 TTGTAGCACTCCCTCCGTCC 61.256 60.000 0.00 0.00 0.00 4.79
3715 5867 2.439701 TAGCACTCCCTCCGTCCG 60.440 66.667 0.00 0.00 0.00 4.79
3718 5870 2.678934 CACTCCCTCCGTCCGGAA 60.679 66.667 5.23 0.00 44.66 4.30
3719 5871 2.118951 ACTCCCTCCGTCCGGAAA 59.881 61.111 5.23 0.00 44.66 3.13
3720 5872 1.305887 ACTCCCTCCGTCCGGAAAT 60.306 57.895 5.23 0.00 44.66 2.17
3721 5873 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3722 5874 1.339097 CTCCCTCCGTCCGGAAATAT 58.661 55.000 5.23 0.00 44.66 1.28
3723 5875 1.692519 CTCCCTCCGTCCGGAAATATT 59.307 52.381 5.23 0.00 44.66 1.28
3724 5876 2.104281 CTCCCTCCGTCCGGAAATATTT 59.896 50.000 5.23 0.00 44.66 1.40
3725 5877 3.307506 TCCCTCCGTCCGGAAATATTTA 58.692 45.455 5.23 0.00 44.66 1.40
3726 5878 3.905591 TCCCTCCGTCCGGAAATATTTAT 59.094 43.478 5.23 0.00 44.66 1.40
3727 5879 4.348754 TCCCTCCGTCCGGAAATATTTATT 59.651 41.667 5.23 0.00 44.66 1.40
3728 5880 4.454504 CCCTCCGTCCGGAAATATTTATTG 59.545 45.833 5.23 0.00 44.66 1.90
3729 5881 5.302360 CCTCCGTCCGGAAATATTTATTGA 58.698 41.667 5.23 0.00 44.66 2.57
3730 5882 5.761234 CCTCCGTCCGGAAATATTTATTGAA 59.239 40.000 5.23 0.00 44.66 2.69
3731 5883 6.430000 CCTCCGTCCGGAAATATTTATTGAAT 59.570 38.462 5.23 0.00 44.66 2.57
3732 5884 7.040686 CCTCCGTCCGGAAATATTTATTGAATT 60.041 37.037 5.23 0.00 44.66 2.17
3733 5885 7.867752 TCCGTCCGGAAATATTTATTGAATTC 58.132 34.615 5.23 0.00 42.05 2.17
3734 5886 7.040961 TCCGTCCGGAAATATTTATTGAATTCC 60.041 37.037 5.23 0.00 42.05 3.01
3735 5887 6.795114 CGTCCGGAAATATTTATTGAATTCCG 59.205 38.462 5.23 15.65 36.86 4.30
3739 5891 6.795114 CGGAAATATTTATTGAATTCCGGACG 59.205 38.462 1.83 0.00 33.92 4.79
3740 5892 7.081976 GGAAATATTTATTGAATTCCGGACGG 58.918 38.462 1.83 3.96 0.00 4.79
3741 5893 7.040961 GGAAATATTTATTGAATTCCGGACGGA 60.041 37.037 1.83 9.76 43.52 4.69
3742 5894 7.435068 AATATTTATTGAATTCCGGACGGAG 57.565 36.000 13.64 0.00 46.06 4.63
3743 5895 2.902705 TATTGAATTCCGGACGGAGG 57.097 50.000 13.64 0.00 46.06 4.30
3744 5896 0.180406 ATTGAATTCCGGACGGAGGG 59.820 55.000 13.64 0.00 46.06 4.30
3745 5897 0.905809 TTGAATTCCGGACGGAGGGA 60.906 55.000 13.64 0.00 46.06 4.20
3746 5898 0.905809 TGAATTCCGGACGGAGGGAA 60.906 55.000 13.64 5.91 46.06 3.97
3747 5899 4.394102 ATTCCGGACGGAGGGAAT 57.606 55.556 13.64 9.50 45.46 3.01
3749 5901 3.545003 TTCCGGACGGAGGGAATAT 57.455 52.632 13.64 0.00 46.06 1.28
3750 5902 2.681319 TTCCGGACGGAGGGAATATA 57.319 50.000 13.64 0.00 46.06 0.86
3751 5903 2.913603 TCCGGACGGAGGGAATATAT 57.086 50.000 9.76 0.00 39.76 0.86
3757 5909 5.488341 CGGACGGAGGGAATATATGATTTT 58.512 41.667 0.00 0.00 0.00 1.82
3791 5943 2.303022 TGCGAAGGAGGTTCAATCTTCT 59.697 45.455 0.00 0.00 34.44 2.85
3792 5944 2.933260 GCGAAGGAGGTTCAATCTTCTC 59.067 50.000 0.00 0.00 34.44 2.87
3793 5945 3.182967 CGAAGGAGGTTCAATCTTCTCG 58.817 50.000 0.00 0.00 34.44 4.04
3794 5946 3.526534 GAAGGAGGTTCAATCTTCTCGG 58.473 50.000 0.00 0.00 34.97 4.63
3795 5947 2.821437 AGGAGGTTCAATCTTCTCGGA 58.179 47.619 0.00 0.00 0.00 4.55
3797 5949 2.498078 GGAGGTTCAATCTTCTCGGAGT 59.502 50.000 4.69 0.00 0.00 3.85
3798 5950 3.429684 GGAGGTTCAATCTTCTCGGAGTC 60.430 52.174 4.69 0.00 0.00 3.36
3799 5951 3.436243 AGGTTCAATCTTCTCGGAGTCT 58.564 45.455 4.69 0.00 0.00 3.24
3800 5952 3.445805 AGGTTCAATCTTCTCGGAGTCTC 59.554 47.826 4.69 0.00 0.00 3.36
3801 5953 3.430931 GTTCAATCTTCTCGGAGTCTCG 58.569 50.000 4.69 0.00 0.00 4.04
3802 5954 1.402259 TCAATCTTCTCGGAGTCTCGC 59.598 52.381 4.69 0.00 0.00 5.03
3803 5955 0.741915 AATCTTCTCGGAGTCTCGCC 59.258 55.000 4.69 0.00 0.00 5.54
3804 5956 0.394488 ATCTTCTCGGAGTCTCGCCA 60.394 55.000 4.69 0.00 0.00 5.69
3805 5957 0.394488 TCTTCTCGGAGTCTCGCCAT 60.394 55.000 4.69 0.00 0.00 4.40
3812 5964 0.755686 GGAGTCTCGCCATCCATCTT 59.244 55.000 0.00 0.00 33.08 2.40
3906 6614 5.007724 CGAAAGCCTGTTATACCATTCTTCC 59.992 44.000 0.00 0.00 0.00 3.46
3909 6617 3.744530 GCCTGTTATACCATTCTTCCGCT 60.745 47.826 0.00 0.00 0.00 5.52
3942 6650 9.803315 CCCAAAGATAATTTAAAGAGTTTAGGC 57.197 33.333 0.00 0.00 0.00 3.93
3982 6690 8.085909 AGGAACACTTTAATTTTGGAAATACCG 58.914 33.333 0.00 0.00 42.61 4.02
4016 6724 6.775088 TCAAAGAACATTATAAGCGCTTGAG 58.225 36.000 32.23 18.01 0.00 3.02
4021 6729 3.118408 ACATTATAAGCGCTTGAGGGTCA 60.118 43.478 32.23 11.16 0.00 4.02
4108 6816 8.980481 AATATTCAGAAGTAACATTGGTAGGG 57.020 34.615 0.00 0.00 0.00 3.53
4120 6828 9.841295 GTAACATTGGTAGGGTAAATTATCAGA 57.159 33.333 0.00 0.00 0.00 3.27
4137 6845 3.453868 TCAGAGATCTTGAACCCATGGA 58.546 45.455 15.22 0.00 0.00 3.41
4153 6861 2.452600 TGGAAGGGGCACAATAATCC 57.547 50.000 0.00 0.00 0.00 3.01
4198 6906 4.893601 TCGCCGTGTCCGCAAACA 62.894 61.111 0.00 0.00 0.00 2.83
4200 6908 2.051345 GCCGTGTCCGCAAACAAG 60.051 61.111 0.00 0.00 0.00 3.16
4201 6909 2.830285 GCCGTGTCCGCAAACAAGT 61.830 57.895 1.82 0.00 0.00 3.16
4202 6910 1.500512 GCCGTGTCCGCAAACAAGTA 61.501 55.000 1.82 0.00 0.00 2.24
4203 6911 0.938713 CCGTGTCCGCAAACAAGTAA 59.061 50.000 1.82 0.00 0.00 2.24
4204 6912 1.333435 CCGTGTCCGCAAACAAGTAAC 60.333 52.381 1.82 0.00 0.00 2.50
4205 6913 1.595794 CGTGTCCGCAAACAAGTAACT 59.404 47.619 0.00 0.00 0.00 2.24
4206 6914 2.348218 CGTGTCCGCAAACAAGTAACTC 60.348 50.000 0.00 0.00 0.00 3.01
4207 6915 1.862201 TGTCCGCAAACAAGTAACTCG 59.138 47.619 0.00 0.00 0.00 4.18
4208 6916 1.862827 GTCCGCAAACAAGTAACTCGT 59.137 47.619 0.00 0.00 0.00 4.18
4209 6917 3.052036 GTCCGCAAACAAGTAACTCGTA 58.948 45.455 0.00 0.00 0.00 3.43
4210 6918 3.490526 GTCCGCAAACAAGTAACTCGTAA 59.509 43.478 0.00 0.00 0.00 3.18
4211 6919 4.151157 GTCCGCAAACAAGTAACTCGTAAT 59.849 41.667 0.00 0.00 0.00 1.89
4212 6920 5.345741 GTCCGCAAACAAGTAACTCGTAATA 59.654 40.000 0.00 0.00 0.00 0.98
4213 6921 6.035327 GTCCGCAAACAAGTAACTCGTAATAT 59.965 38.462 0.00 0.00 0.00 1.28
4214 6922 7.220683 GTCCGCAAACAAGTAACTCGTAATATA 59.779 37.037 0.00 0.00 0.00 0.86
4215 6923 7.922278 TCCGCAAACAAGTAACTCGTAATATAT 59.078 33.333 0.00 0.00 0.00 0.86
4216 6924 8.545420 CCGCAAACAAGTAACTCGTAATATATT 58.455 33.333 2.97 2.97 0.00 1.28
4217 6925 9.564041 CGCAAACAAGTAACTCGTAATATATTC 57.436 33.333 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.464013 TCGTCGGAACCAGGCAAAAA 60.464 50.000 0.00 0.00 0.00 1.94
14 15 1.301401 CTCGTCGGAACCAGGCAAA 60.301 57.895 0.00 0.00 0.00 3.68
20 21 2.678934 CCTCCCTCGTCGGAACCA 60.679 66.667 0.00 0.00 33.16 3.67
23 24 2.362120 GTCCCTCCCTCGTCGGAA 60.362 66.667 0.00 0.00 33.16 4.30
54 55 1.391485 CATTGAAGTGAGCCGAAGACG 59.609 52.381 0.00 0.00 39.43 4.18
56 57 1.002430 AGCATTGAAGTGAGCCGAAGA 59.998 47.619 0.00 0.00 0.00 2.87
86 87 3.570125 CCAGATTCGTAGACCATCTAGCA 59.430 47.826 0.00 0.00 32.36 3.49
137 138 7.434897 GCTTGTGTCTGTATTGATGTTCAAAAA 59.565 33.333 0.00 0.00 40.12 1.94
138 139 6.917477 GCTTGTGTCTGTATTGATGTTCAAAA 59.083 34.615 0.00 0.00 40.12 2.44
139 140 6.039159 TGCTTGTGTCTGTATTGATGTTCAAA 59.961 34.615 0.00 0.00 40.12 2.69
140 141 5.530543 TGCTTGTGTCTGTATTGATGTTCAA 59.469 36.000 0.00 0.00 41.09 2.69
141 142 5.049474 GTGCTTGTGTCTGTATTGATGTTCA 60.049 40.000 0.00 0.00 0.00 3.18
142 143 5.180117 AGTGCTTGTGTCTGTATTGATGTTC 59.820 40.000 0.00 0.00 0.00 3.18
143 144 5.065914 AGTGCTTGTGTCTGTATTGATGTT 58.934 37.500 0.00 0.00 0.00 2.71
144 145 4.645535 AGTGCTTGTGTCTGTATTGATGT 58.354 39.130 0.00 0.00 0.00 3.06
145 146 4.692155 TGAGTGCTTGTGTCTGTATTGATG 59.308 41.667 0.00 0.00 0.00 3.07
146 147 4.898320 TGAGTGCTTGTGTCTGTATTGAT 58.102 39.130 0.00 0.00 0.00 2.57
147 148 4.335400 TGAGTGCTTGTGTCTGTATTGA 57.665 40.909 0.00 0.00 0.00 2.57
148 149 6.915544 ATATGAGTGCTTGTGTCTGTATTG 57.084 37.500 0.00 0.00 0.00 1.90
149 150 7.555965 TGTATATGAGTGCTTGTGTCTGTATT 58.444 34.615 0.00 0.00 0.00 1.89
150 151 7.112452 TGTATATGAGTGCTTGTGTCTGTAT 57.888 36.000 0.00 0.00 0.00 2.29
151 152 6.524101 TGTATATGAGTGCTTGTGTCTGTA 57.476 37.500 0.00 0.00 0.00 2.74
152 153 5.405935 TGTATATGAGTGCTTGTGTCTGT 57.594 39.130 0.00 0.00 0.00 3.41
153 154 5.220284 CGTTGTATATGAGTGCTTGTGTCTG 60.220 44.000 0.00 0.00 0.00 3.51
154 155 4.864806 CGTTGTATATGAGTGCTTGTGTCT 59.135 41.667 0.00 0.00 0.00 3.41
155 156 4.492570 GCGTTGTATATGAGTGCTTGTGTC 60.493 45.833 0.00 0.00 0.00 3.67
156 157 3.370978 GCGTTGTATATGAGTGCTTGTGT 59.629 43.478 0.00 0.00 0.00 3.72
157 158 3.370672 TGCGTTGTATATGAGTGCTTGTG 59.629 43.478 0.00 0.00 0.00 3.33
158 159 3.595173 TGCGTTGTATATGAGTGCTTGT 58.405 40.909 0.00 0.00 0.00 3.16
159 160 4.801147 ATGCGTTGTATATGAGTGCTTG 57.199 40.909 0.00 0.00 0.00 4.01
160 161 5.234329 GTGTATGCGTTGTATATGAGTGCTT 59.766 40.000 0.00 0.00 0.00 3.91
161 162 4.745125 GTGTATGCGTTGTATATGAGTGCT 59.255 41.667 0.00 0.00 0.00 4.40
162 163 4.745125 AGTGTATGCGTTGTATATGAGTGC 59.255 41.667 0.00 0.00 0.00 4.40
163 164 5.977129 TGAGTGTATGCGTTGTATATGAGTG 59.023 40.000 0.00 0.00 0.00 3.51
164 165 6.144078 TGAGTGTATGCGTTGTATATGAGT 57.856 37.500 0.00 0.00 0.00 3.41
165 166 6.309009 GGATGAGTGTATGCGTTGTATATGAG 59.691 42.308 0.00 0.00 0.00 2.90
166 167 6.156519 GGATGAGTGTATGCGTTGTATATGA 58.843 40.000 0.00 0.00 0.00 2.15
167 168 5.348724 GGGATGAGTGTATGCGTTGTATATG 59.651 44.000 0.00 0.00 0.00 1.78
168 169 5.246203 AGGGATGAGTGTATGCGTTGTATAT 59.754 40.000 0.00 0.00 0.00 0.86
169 170 4.587262 AGGGATGAGTGTATGCGTTGTATA 59.413 41.667 0.00 0.00 0.00 1.47
170 171 3.388024 AGGGATGAGTGTATGCGTTGTAT 59.612 43.478 0.00 0.00 0.00 2.29
171 172 2.764010 AGGGATGAGTGTATGCGTTGTA 59.236 45.455 0.00 0.00 0.00 2.41
172 173 1.555075 AGGGATGAGTGTATGCGTTGT 59.445 47.619 0.00 0.00 0.00 3.32
173 174 2.315925 AGGGATGAGTGTATGCGTTG 57.684 50.000 0.00 0.00 0.00 4.10
174 175 3.641436 TCATAGGGATGAGTGTATGCGTT 59.359 43.478 0.00 0.00 37.15 4.84
175 176 3.230976 TCATAGGGATGAGTGTATGCGT 58.769 45.455 0.00 0.00 37.15 5.24
176 177 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
177 178 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
178 179 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
179 180 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
180 181 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
181 182 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
182 183 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
183 184 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
184 185 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
185 186 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
186 187 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
187 188 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
188 189 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
189 190 1.358725 CCGTGTGTGCGTTCATAGGG 61.359 60.000 4.07 4.07 0.00 3.53
190 191 1.358725 CCCGTGTGTGCGTTCATAGG 61.359 60.000 0.00 0.00 0.00 2.57
191 192 1.966493 GCCCGTGTGTGCGTTCATAG 61.966 60.000 0.00 0.00 0.00 2.23
192 193 2.030401 GCCCGTGTGTGCGTTCATA 61.030 57.895 0.00 0.00 0.00 2.15
193 194 3.353836 GCCCGTGTGTGCGTTCAT 61.354 61.111 0.00 0.00 0.00 2.57
194 195 4.840005 TGCCCGTGTGTGCGTTCA 62.840 61.111 0.00 0.00 0.00 3.18
195 196 4.307908 GTGCCCGTGTGTGCGTTC 62.308 66.667 0.00 0.00 0.00 3.95
196 197 4.849310 AGTGCCCGTGTGTGCGTT 62.849 61.111 0.00 0.00 0.00 4.84
198 199 2.835701 ATAGAGTGCCCGTGTGTGCG 62.836 60.000 0.00 0.00 0.00 5.34
199 200 1.079127 ATAGAGTGCCCGTGTGTGC 60.079 57.895 0.00 0.00 0.00 4.57
200 201 0.460284 GGATAGAGTGCCCGTGTGTG 60.460 60.000 0.00 0.00 0.00 3.82
201 202 1.614241 GGGATAGAGTGCCCGTGTGT 61.614 60.000 0.00 0.00 34.00 3.72
202 203 1.144057 GGGATAGAGTGCCCGTGTG 59.856 63.158 0.00 0.00 34.00 3.82
203 204 3.630289 GGGATAGAGTGCCCGTGT 58.370 61.111 0.00 0.00 34.00 4.49
207 208 1.552792 GCTCATAGGGATAGAGTGCCC 59.447 57.143 0.00 0.00 45.04 5.36
208 209 2.028567 GTGCTCATAGGGATAGAGTGCC 60.029 54.545 0.00 0.00 38.92 5.01
209 210 2.028567 GGTGCTCATAGGGATAGAGTGC 60.029 54.545 0.00 0.00 0.00 4.40
210 211 3.505386 AGGTGCTCATAGGGATAGAGTG 58.495 50.000 0.00 0.00 0.00 3.51
211 212 3.501385 GGAGGTGCTCATAGGGATAGAGT 60.501 52.174 0.00 0.00 31.08 3.24
212 213 3.096092 GGAGGTGCTCATAGGGATAGAG 58.904 54.545 0.00 0.00 31.08 2.43
213 214 2.555448 CGGAGGTGCTCATAGGGATAGA 60.555 54.545 0.00 0.00 31.08 1.98
214 215 1.821753 CGGAGGTGCTCATAGGGATAG 59.178 57.143 0.00 0.00 31.08 2.08
215 216 1.427753 TCGGAGGTGCTCATAGGGATA 59.572 52.381 0.00 0.00 31.08 2.59
216 217 0.188587 TCGGAGGTGCTCATAGGGAT 59.811 55.000 0.00 0.00 31.08 3.85
217 218 0.032515 TTCGGAGGTGCTCATAGGGA 60.033 55.000 0.00 0.00 31.08 4.20
218 219 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
219 220 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
220 221 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
221 222 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
222 223 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
223 224 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
224 225 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
225 226 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
226 227 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
227 228 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
228 229 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
229 230 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
230 231 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
231 232 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
232 233 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
233 234 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
234 235 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
235 236 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
236 237 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
237 238 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
238 239 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
239 240 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
240 241 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
241 242 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
242 243 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
243 244 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
244 245 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
245 246 6.820152 TCATAAATCTCAAGATGATATGCCGG 59.180 38.462 0.00 0.00 36.32 6.13
246 247 7.838771 TCATAAATCTCAAGATGATATGCCG 57.161 36.000 15.00 0.00 36.32 5.69
247 248 9.228949 ACTTCATAAATCTCAAGATGATATGCC 57.771 33.333 15.00 0.00 36.32 4.40
257 258 9.202273 GCCTATAGTGACTTCATAAATCTCAAG 57.798 37.037 0.00 0.00 0.00 3.02
258 259 7.867909 CGCCTATAGTGACTTCATAAATCTCAA 59.132 37.037 0.00 0.00 0.00 3.02
259 260 7.371159 CGCCTATAGTGACTTCATAAATCTCA 58.629 38.462 0.00 0.00 0.00 3.27
260 261 6.309251 GCGCCTATAGTGACTTCATAAATCTC 59.691 42.308 0.00 0.00 0.00 2.75
261 262 6.015010 AGCGCCTATAGTGACTTCATAAATCT 60.015 38.462 2.29 0.00 0.00 2.40
262 263 6.159988 AGCGCCTATAGTGACTTCATAAATC 58.840 40.000 2.29 0.00 0.00 2.17
263 264 6.102897 AGCGCCTATAGTGACTTCATAAAT 57.897 37.500 2.29 0.00 0.00 1.40
264 265 5.531122 AGCGCCTATAGTGACTTCATAAA 57.469 39.130 2.29 0.00 0.00 1.40
265 266 5.531122 AAGCGCCTATAGTGACTTCATAA 57.469 39.130 2.29 0.00 0.00 1.90
266 267 5.163447 ACAAAGCGCCTATAGTGACTTCATA 60.163 40.000 2.29 0.00 0.00 2.15
267 268 4.122776 CAAAGCGCCTATAGTGACTTCAT 58.877 43.478 2.29 0.00 0.00 2.57
268 269 3.056107 ACAAAGCGCCTATAGTGACTTCA 60.056 43.478 2.29 0.00 0.00 3.02
269 270 3.522553 ACAAAGCGCCTATAGTGACTTC 58.477 45.455 2.29 0.00 0.00 3.01
270 271 3.522553 GACAAAGCGCCTATAGTGACTT 58.477 45.455 2.29 0.00 0.00 3.01
271 272 2.479730 CGACAAAGCGCCTATAGTGACT 60.480 50.000 2.29 0.00 0.00 3.41
272 273 1.852895 CGACAAAGCGCCTATAGTGAC 59.147 52.381 2.29 0.00 0.00 3.67
273 274 1.475280 ACGACAAAGCGCCTATAGTGA 59.525 47.619 2.29 0.00 33.86 3.41
274 275 1.852895 GACGACAAAGCGCCTATAGTG 59.147 52.381 2.29 0.00 33.86 2.74
275 276 1.533338 CGACGACAAAGCGCCTATAGT 60.533 52.381 2.29 0.00 33.86 2.12
276 277 1.121240 CGACGACAAAGCGCCTATAG 58.879 55.000 2.29 0.00 33.86 1.31
277 278 0.734309 TCGACGACAAAGCGCCTATA 59.266 50.000 2.29 0.00 33.86 1.31
278 279 0.801067 GTCGACGACAAAGCGCCTAT 60.801 55.000 22.66 0.00 32.09 2.57
279 280 1.443194 GTCGACGACAAAGCGCCTA 60.443 57.895 22.66 0.00 32.09 3.93
280 281 2.733593 GTCGACGACAAAGCGCCT 60.734 61.111 22.66 0.00 32.09 5.52
281 282 4.117372 CGTCGACGACAAAGCGCC 62.117 66.667 33.35 0.00 43.02 6.53
282 283 4.117372 CCGTCGACGACAAAGCGC 62.117 66.667 37.65 0.00 43.02 5.92
283 284 1.542272 TTTCCGTCGACGACAAAGCG 61.542 55.000 37.65 19.50 43.02 4.68
284 285 0.111398 GTTTCCGTCGACGACAAAGC 60.111 55.000 37.65 24.13 43.02 3.51
285 286 0.158096 CGTTTCCGTCGACGACAAAG 59.842 55.000 37.65 25.07 41.53 2.77
286 287 0.525242 ACGTTTCCGTCGACGACAAA 60.525 50.000 37.65 29.16 46.28 2.83
287 288 1.063972 ACGTTTCCGTCGACGACAA 59.936 52.632 37.65 25.59 46.28 3.18
288 289 2.715005 ACGTTTCCGTCGACGACA 59.285 55.556 37.65 21.38 46.28 4.35
297 298 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
298 299 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
299 300 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
300 301 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
301 302 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
302 303 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
303 304 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
304 305 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
305 306 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
306 307 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
307 308 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
308 309 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
309 310 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
310 311 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
311 312 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
322 323 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
323 324 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
324 325 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
325 326 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
326 327 5.220970 GGATTTATTTCAGGATTTTCGGCGA 60.221 40.000 4.99 4.99 0.00 5.54
327 328 4.976116 GGATTTATTTCAGGATTTTCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
328 329 5.901552 TGGATTTATTTCAGGATTTTCGGC 58.098 37.500 0.00 0.00 0.00 5.54
329 330 7.333528 TCTGGATTTATTTCAGGATTTTCGG 57.666 36.000 0.00 0.00 0.00 4.30
330 331 9.807649 ATTTCTGGATTTATTTCAGGATTTTCG 57.192 29.630 0.00 0.00 0.00 3.46
337 338 8.971321 CGCATTTATTTCTGGATTTATTTCAGG 58.029 33.333 0.00 0.00 0.00 3.86
338 339 9.734620 TCGCATTTATTTCTGGATTTATTTCAG 57.265 29.630 0.00 0.00 0.00 3.02
339 340 9.734620 CTCGCATTTATTTCTGGATTTATTTCA 57.265 29.630 0.00 0.00 0.00 2.69
340 341 8.694394 GCTCGCATTTATTTCTGGATTTATTTC 58.306 33.333 0.00 0.00 0.00 2.17
341 342 8.196771 TGCTCGCATTTATTTCTGGATTTATTT 58.803 29.630 0.00 0.00 0.00 1.40
342 343 7.715657 TGCTCGCATTTATTTCTGGATTTATT 58.284 30.769 0.00 0.00 0.00 1.40
343 344 7.275888 TGCTCGCATTTATTTCTGGATTTAT 57.724 32.000 0.00 0.00 0.00 1.40
344 345 6.691754 TGCTCGCATTTATTTCTGGATTTA 57.308 33.333 0.00 0.00 0.00 1.40
345 346 5.581126 TGCTCGCATTTATTTCTGGATTT 57.419 34.783 0.00 0.00 0.00 2.17
346 347 5.300034 TGATGCTCGCATTTATTTCTGGATT 59.700 36.000 5.79 0.00 36.70 3.01
347 348 4.823442 TGATGCTCGCATTTATTTCTGGAT 59.177 37.500 5.79 0.00 36.70 3.41
348 349 4.198530 TGATGCTCGCATTTATTTCTGGA 58.801 39.130 5.79 0.00 36.70 3.86
349 350 4.274214 TCTGATGCTCGCATTTATTTCTGG 59.726 41.667 5.79 0.00 36.70 3.86
350 351 5.413969 TCTGATGCTCGCATTTATTTCTG 57.586 39.130 5.79 0.00 36.70 3.02
351 352 6.630444 ATTCTGATGCTCGCATTTATTTCT 57.370 33.333 5.79 0.00 36.70 2.52
352 353 7.433131 TCAAATTCTGATGCTCGCATTTATTTC 59.567 33.333 5.79 0.00 36.70 2.17
353 354 7.259882 TCAAATTCTGATGCTCGCATTTATTT 58.740 30.769 5.79 7.08 36.70 1.40
354 355 6.798482 TCAAATTCTGATGCTCGCATTTATT 58.202 32.000 5.79 1.93 36.70 1.40
355 356 6.381481 TCAAATTCTGATGCTCGCATTTAT 57.619 33.333 5.79 0.00 36.70 1.40
356 357 5.816449 TCAAATTCTGATGCTCGCATTTA 57.184 34.783 5.79 0.00 36.70 1.40
357 358 4.707030 TCAAATTCTGATGCTCGCATTT 57.293 36.364 5.79 0.00 36.70 2.32
358 359 4.418392 GTTCAAATTCTGATGCTCGCATT 58.582 39.130 5.79 0.00 36.70 3.56
359 360 3.181493 GGTTCAAATTCTGATGCTCGCAT 60.181 43.478 3.70 3.70 39.69 4.73
360 361 2.162208 GGTTCAAATTCTGATGCTCGCA 59.838 45.455 0.00 0.00 32.78 5.10
361 362 2.478539 GGGTTCAAATTCTGATGCTCGC 60.479 50.000 0.00 0.00 32.78 5.03
362 363 3.012518 AGGGTTCAAATTCTGATGCTCG 58.987 45.455 0.00 0.00 32.78 5.03
363 364 4.012374 TCAGGGTTCAAATTCTGATGCTC 58.988 43.478 0.00 0.00 32.78 4.26
364 365 4.038271 TCAGGGTTCAAATTCTGATGCT 57.962 40.909 0.00 0.00 32.78 3.79
365 366 4.996788 ATCAGGGTTCAAATTCTGATGC 57.003 40.909 4.71 0.00 43.02 3.91
381 382 0.995024 GGTATCCCCATCCCATCAGG 59.005 60.000 0.00 0.00 0.00 3.86
382 383 1.746157 TGGTATCCCCATCCCATCAG 58.254 55.000 0.00 0.00 38.72 2.90
394 395 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
395 396 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
396 397 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
397 398 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
398 399 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
399 400 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
400 401 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
401 402 2.642171 TGGATGGTTAGAGGGACTGT 57.358 50.000 0.00 0.00 41.55 3.55
402 403 3.455910 TGATTGGATGGTTAGAGGGACTG 59.544 47.826 0.00 0.00 41.55 3.51
404 405 3.199946 TGTGATTGGATGGTTAGAGGGAC 59.800 47.826 0.00 0.00 0.00 4.46
405 406 3.455910 CTGTGATTGGATGGTTAGAGGGA 59.544 47.826 0.00 0.00 0.00 4.20
406 407 3.434167 CCTGTGATTGGATGGTTAGAGGG 60.434 52.174 0.00 0.00 0.00 4.30
407 408 3.200825 ACCTGTGATTGGATGGTTAGAGG 59.799 47.826 0.00 0.00 0.00 3.69
408 409 4.494091 ACCTGTGATTGGATGGTTAGAG 57.506 45.455 0.00 0.00 0.00 2.43
409 410 4.588899 CAACCTGTGATTGGATGGTTAGA 58.411 43.478 0.00 0.00 38.76 2.10
410 411 4.970662 CAACCTGTGATTGGATGGTTAG 57.029 45.455 0.00 0.00 38.76 2.34
419 420 2.288395 GGAGCAAACCAACCTGTGATTG 60.288 50.000 0.00 0.00 0.00 2.67
420 421 1.963515 GGAGCAAACCAACCTGTGATT 59.036 47.619 0.00 0.00 0.00 2.57
421 422 1.620822 GGAGCAAACCAACCTGTGAT 58.379 50.000 0.00 0.00 0.00 3.06
422 423 0.817634 CGGAGCAAACCAACCTGTGA 60.818 55.000 0.00 0.00 0.00 3.58
423 424 0.817634 TCGGAGCAAACCAACCTGTG 60.818 55.000 0.00 0.00 0.00 3.66
424 425 0.110486 ATCGGAGCAAACCAACCTGT 59.890 50.000 0.00 0.00 0.00 4.00
425 426 2.107950 TATCGGAGCAAACCAACCTG 57.892 50.000 0.00 0.00 0.00 4.00
426 427 3.366052 AATATCGGAGCAAACCAACCT 57.634 42.857 0.00 0.00 0.00 3.50
427 428 3.192633 ACAAATATCGGAGCAAACCAACC 59.807 43.478 0.00 0.00 0.00 3.77
428 429 4.434713 ACAAATATCGGAGCAAACCAAC 57.565 40.909 0.00 0.00 0.00 3.77
429 430 6.767524 ATAACAAATATCGGAGCAAACCAA 57.232 33.333 0.00 0.00 0.00 3.67
430 431 7.040755 CCATATAACAAATATCGGAGCAAACCA 60.041 37.037 0.00 0.00 0.00 3.67
431 432 7.305474 CCATATAACAAATATCGGAGCAAACC 58.695 38.462 0.00 0.00 0.00 3.27
432 433 6.801862 GCCATATAACAAATATCGGAGCAAAC 59.198 38.462 0.00 0.00 0.00 2.93
433 434 6.488344 TGCCATATAACAAATATCGGAGCAAA 59.512 34.615 0.00 0.00 0.00 3.68
434 435 6.000840 TGCCATATAACAAATATCGGAGCAA 58.999 36.000 0.00 0.00 0.00 3.91
435 436 5.555966 TGCCATATAACAAATATCGGAGCA 58.444 37.500 0.00 0.00 0.00 4.26
436 437 6.316140 TCATGCCATATAACAAATATCGGAGC 59.684 38.462 0.00 0.00 0.00 4.70
437 438 7.848223 TCATGCCATATAACAAATATCGGAG 57.152 36.000 0.00 0.00 0.00 4.63
448 449 9.970395 TTGATCTTTTCAATCATGCCATATAAC 57.030 29.630 0.00 0.00 39.44 1.89
469 470 3.801594 TGCGCCAGAAAAACTTTTTGATC 59.198 39.130 4.18 0.00 0.00 2.92
470 471 3.791245 TGCGCCAGAAAAACTTTTTGAT 58.209 36.364 4.18 0.00 0.00 2.57
471 472 3.238108 TGCGCCAGAAAAACTTTTTGA 57.762 38.095 4.18 0.00 0.00 2.69
472 473 4.534794 ATTGCGCCAGAAAAACTTTTTG 57.465 36.364 4.18 0.00 0.00 2.44
473 474 6.670077 TTTATTGCGCCAGAAAAACTTTTT 57.330 29.167 4.18 0.00 0.00 1.94
475 476 6.670077 TTTTTATTGCGCCAGAAAAACTTT 57.330 29.167 19.13 0.00 0.00 2.66
564 569 2.383527 CGCTTGGCTCAGTCGGTTC 61.384 63.158 0.00 0.00 0.00 3.62
718 726 0.324285 CAGGAAGAGCAGTGGAAGCT 59.676 55.000 0.00 0.00 46.82 3.74
719 727 0.676151 CCAGGAAGAGCAGTGGAAGC 60.676 60.000 0.00 0.00 31.04 3.86
720 728 0.676151 GCCAGGAAGAGCAGTGGAAG 60.676 60.000 0.00 0.00 31.04 3.46
732 740 2.032528 CCGCTCAACAGCCAGGAA 59.967 61.111 0.00 0.00 43.56 3.36
744 752 1.641577 GACTTACACATGGACCGCTC 58.358 55.000 0.00 0.00 0.00 5.03
929 937 1.341778 CCGGTACCCTCCTCAAGTACT 60.342 57.143 6.25 0.00 37.20 2.73
962 970 0.036732 AGTTGATGCCAAGGCGAAGA 59.963 50.000 6.60 0.00 45.51 2.87
1408 1419 1.982958 GAAACTAGGGGTCAAGTGGGA 59.017 52.381 0.00 0.00 0.00 4.37
1409 1420 1.985895 AGAAACTAGGGGTCAAGTGGG 59.014 52.381 0.00 0.00 0.00 4.61
1410 1421 3.181443 ACAAGAAACTAGGGGTCAAGTGG 60.181 47.826 0.00 0.00 0.00 4.00
1575 1591 5.452077 GGAGTAGCTCGGATGAATTGTAAGT 60.452 44.000 0.00 0.00 0.00 2.24
1576 1592 4.985409 GGAGTAGCTCGGATGAATTGTAAG 59.015 45.833 0.00 0.00 0.00 2.34
1577 1593 4.404394 TGGAGTAGCTCGGATGAATTGTAA 59.596 41.667 0.00 0.00 0.00 2.41
1578 1594 3.958147 TGGAGTAGCTCGGATGAATTGTA 59.042 43.478 0.00 0.00 0.00 2.41
1624 1640 3.316029 TCGTCTCGGATCGCCTAATTAAA 59.684 43.478 0.00 0.00 0.00 1.52
1625 1641 2.880268 TCGTCTCGGATCGCCTAATTAA 59.120 45.455 0.00 0.00 0.00 1.40
1626 1642 2.497138 TCGTCTCGGATCGCCTAATTA 58.503 47.619 0.00 0.00 0.00 1.40
1627 1643 1.315690 TCGTCTCGGATCGCCTAATT 58.684 50.000 0.00 0.00 0.00 1.40
1628 1644 1.001597 GTTCGTCTCGGATCGCCTAAT 60.002 52.381 0.00 0.00 0.00 1.73
1703 1720 2.737252 GCTGCTACATAAACCTATCGGC 59.263 50.000 0.00 0.00 0.00 5.54
1775 1792 2.146073 CTCCTGCGCAAACAAAGGGG 62.146 60.000 13.05 3.58 0.00 4.79
1910 1932 5.360144 TCTCTGCCCTGACACTAGTAATTAC 59.640 44.000 7.57 7.57 0.00 1.89
1911 1933 5.516044 TCTCTGCCCTGACACTAGTAATTA 58.484 41.667 0.00 0.00 0.00 1.40
1912 1934 4.353777 TCTCTGCCCTGACACTAGTAATT 58.646 43.478 0.00 0.00 0.00 1.40
2003 2027 3.378861 ACTGGACTGGGGTACTACTAC 57.621 52.381 0.00 0.00 0.00 2.73
2004 2028 4.114597 AGTACTGGACTGGGGTACTACTA 58.885 47.826 0.00 0.00 42.61 1.82
2005 2029 2.924977 AGTACTGGACTGGGGTACTACT 59.075 50.000 0.00 0.00 42.61 2.57
2023 2047 3.306641 GGCCTAGCTAGCGACTACTAGTA 60.307 52.174 15.74 1.89 41.49 1.82
2024 2048 2.550639 GGCCTAGCTAGCGACTACTAGT 60.551 54.545 15.74 0.00 41.49 2.57
2025 2049 2.078392 GGCCTAGCTAGCGACTACTAG 58.922 57.143 15.74 4.29 42.20 2.57
2047 2071 0.179215 CGTTTCCGATGACTGCTTGC 60.179 55.000 0.00 0.00 35.63 4.01
2066 2096 2.380084 TGGGTTCGACTATGACTTGC 57.620 50.000 0.00 0.00 0.00 4.01
2255 2291 2.816712 CGGCACACCCTACCTATAGCTA 60.817 54.545 0.00 0.00 0.00 3.32
2259 2295 0.105862 AGCGGCACACCCTACCTATA 60.106 55.000 1.45 0.00 0.00 1.31
2260 2296 0.981277 AAGCGGCACACCCTACCTAT 60.981 55.000 1.45 0.00 0.00 2.57
2303 4404 1.949799 AGCTCTGAAGACCTGGACAT 58.050 50.000 0.00 0.00 0.00 3.06
2317 4418 3.054139 TGAGATGGCATTGGTAAAGCTCT 60.054 43.478 0.00 0.00 0.00 4.09
2332 4433 5.587844 AGAAGGACGATTCAAAATGAGATGG 59.412 40.000 0.00 0.00 0.00 3.51
2334 4435 5.065731 GCAGAAGGACGATTCAAAATGAGAT 59.934 40.000 0.00 0.00 0.00 2.75
2420 4521 6.260936 CGCAATAACCTGTAGATGGAGAAAAT 59.739 38.462 0.00 0.00 0.00 1.82
2643 4744 2.259204 CCCATGTTGCTGGCGTTG 59.741 61.111 0.00 0.00 34.77 4.10
2817 4918 4.377760 TCCTCCTCGGCCGTTCCT 62.378 66.667 27.15 0.00 0.00 3.36
3079 5189 3.462483 TGAAACGACCAGCTAGAAACA 57.538 42.857 0.00 0.00 0.00 2.83
3080 5190 5.358298 AAATGAAACGACCAGCTAGAAAC 57.642 39.130 0.00 0.00 0.00 2.78
3137 5247 0.603065 ATTTGGACGAGCAAAAGGCC 59.397 50.000 0.00 0.00 46.50 5.19
3268 5380 5.633830 ACGAGTAATTTAGAACGGAGTGA 57.366 39.130 0.00 0.00 45.00 3.41
3269 5381 4.494764 CGACGAGTAATTTAGAACGGAGTG 59.505 45.833 0.00 0.00 45.00 3.51
3271 5383 4.494764 CACGACGAGTAATTTAGAACGGAG 59.505 45.833 0.00 0.00 0.00 4.63
3272 5384 4.406069 CACGACGAGTAATTTAGAACGGA 58.594 43.478 0.00 0.00 0.00 4.69
3273 5385 3.545078 CCACGACGAGTAATTTAGAACGG 59.455 47.826 0.00 0.00 0.00 4.44
3274 5386 4.161333 ACCACGACGAGTAATTTAGAACG 58.839 43.478 0.00 0.00 0.00 3.95
3275 5387 6.457851 AAACCACGACGAGTAATTTAGAAC 57.542 37.500 0.00 0.00 0.00 3.01
3276 5388 7.867403 ACTAAAACCACGACGAGTAATTTAGAA 59.133 33.333 20.72 1.10 36.27 2.10
3277 5389 7.370383 ACTAAAACCACGACGAGTAATTTAGA 58.630 34.615 20.72 3.40 36.27 2.10
3278 5390 7.572502 ACTAAAACCACGACGAGTAATTTAG 57.427 36.000 0.00 12.05 37.40 1.85
3279 5391 7.651304 TGAACTAAAACCACGACGAGTAATTTA 59.349 33.333 0.00 1.47 0.00 1.40
3280 5392 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
3281 5393 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
3282 5394 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
3283 5395 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3284 5396 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3285 5397 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3286 5398 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3287 5399 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3288 5400 7.895582 TTAAATTTGAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
3289 5401 9.292846 AGTTTAAATTTGAACTAAAACCACGAC 57.707 29.630 22.70 0.00 35.55 4.34
3301 5413 9.968620 CGTCGTGATTTTAGTTTAAATTTGAAC 57.031 29.630 15.93 15.93 0.00 3.18
3302 5414 9.932699 TCGTCGTGATTTTAGTTTAAATTTGAA 57.067 25.926 0.00 0.00 0.00 2.69
3303 5415 9.588774 CTCGTCGTGATTTTAGTTTAAATTTGA 57.411 29.630 0.00 0.00 0.00 2.69
3304 5416 9.377383 ACTCGTCGTGATTTTAGTTTAAATTTG 57.623 29.630 0.00 0.00 0.00 2.32
3311 5423 8.013378 CCAAATTACTCGTCGTGATTTTAGTTT 58.987 33.333 0.56 0.00 39.10 2.66
3312 5424 7.385752 TCCAAATTACTCGTCGTGATTTTAGTT 59.614 33.333 0.56 0.00 39.10 2.24
3313 5425 6.869913 TCCAAATTACTCGTCGTGATTTTAGT 59.130 34.615 0.56 0.00 39.10 2.24
3314 5426 7.285783 TCCAAATTACTCGTCGTGATTTTAG 57.714 36.000 0.56 4.32 39.10 1.85
3315 5427 7.512297 GTTCCAAATTACTCGTCGTGATTTTA 58.488 34.615 0.56 0.02 39.10 1.52
3316 5428 6.368213 GTTCCAAATTACTCGTCGTGATTTT 58.632 36.000 0.56 0.00 39.10 1.82
3317 5429 5.389098 CGTTCCAAATTACTCGTCGTGATTT 60.389 40.000 0.56 5.16 41.02 2.17
3318 5430 4.090930 CGTTCCAAATTACTCGTCGTGATT 59.909 41.667 0.56 0.00 33.69 2.57
3319 5431 3.611113 CGTTCCAAATTACTCGTCGTGAT 59.389 43.478 0.56 0.00 0.00 3.06
3320 5432 2.981805 CGTTCCAAATTACTCGTCGTGA 59.018 45.455 0.56 0.00 0.00 4.35
3321 5433 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
3322 5434 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
3323 5435 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3324 5436 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
3325 5437 2.564062 TCCTCCGTTCCAAATTACTCGT 59.436 45.455 0.00 0.00 0.00 4.18
3326 5438 3.241067 TCCTCCGTTCCAAATTACTCG 57.759 47.619 0.00 0.00 0.00 4.18
3327 5439 4.576879 ACTTCCTCCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
3328 5440 4.635699 ACTTCCTCCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
3329 5441 9.939802 ATATATACTTCCTCCGTTCCAAATTAC 57.060 33.333 0.00 0.00 0.00 1.89
3332 5444 9.939802 GTTATATATACTTCCTCCGTTCCAAAT 57.060 33.333 0.00 0.00 0.00 2.32
3333 5445 8.926374 TGTTATATATACTTCCTCCGTTCCAAA 58.074 33.333 0.00 0.00 0.00 3.28
3334 5446 8.481492 TGTTATATATACTTCCTCCGTTCCAA 57.519 34.615 0.00 0.00 0.00 3.53
3335 5447 8.362639 GTTGTTATATATACTTCCTCCGTTCCA 58.637 37.037 0.00 0.00 0.00 3.53
3336 5448 8.362639 TGTTGTTATATATACTTCCTCCGTTCC 58.637 37.037 0.00 0.00 0.00 3.62
3337 5449 9.924650 ATGTTGTTATATATACTTCCTCCGTTC 57.075 33.333 0.00 0.00 0.00 3.95
3379 5491 6.308766 GCGAGGTAAATACGAAGTTTGACTTA 59.691 38.462 0.00 0.00 37.78 2.24
3493 5605 6.437928 TGAAATTCATATTGTTAGATGCGCC 58.562 36.000 4.18 0.00 0.00 6.53
3494 5606 9.778993 ATATGAAATTCATATTGTTAGATGCGC 57.221 29.630 19.60 0.00 45.10 6.09
3646 5798 3.701241 TCCGACAAAAATTTGCTGTGTC 58.299 40.909 10.14 10.98 41.79 3.67
3658 5810 5.464030 ACTAGCTAAGTTCTCCGACAAAA 57.536 39.130 0.00 0.00 33.35 2.44
3677 5829 3.460825 ACAAAGCTTGGGGGAGATACTA 58.539 45.455 5.66 0.00 34.12 1.82
3693 5845 0.608640 ACGGAGGGAGTGCTACAAAG 59.391 55.000 0.00 0.00 0.00 2.77
3701 5853 1.614241 ATTTCCGGACGGAGGGAGTG 61.614 60.000 13.64 0.00 46.06 3.51
3703 5855 1.339097 ATATTTCCGGACGGAGGGAG 58.661 55.000 13.64 0.00 46.06 4.30
3704 5856 1.797320 AATATTTCCGGACGGAGGGA 58.203 50.000 13.64 4.95 46.06 4.20
3705 5857 2.632987 AAATATTTCCGGACGGAGGG 57.367 50.000 13.64 0.00 46.06 4.30
3706 5858 5.302360 TCAATAAATATTTCCGGACGGAGG 58.698 41.667 13.64 0.00 46.06 4.30
3707 5859 6.854496 TTCAATAAATATTTCCGGACGGAG 57.146 37.500 13.64 0.00 46.06 4.63
3708 5860 7.040961 GGAATTCAATAAATATTTCCGGACGGA 60.041 37.037 1.83 9.76 43.52 4.69
3709 5861 7.081976 GGAATTCAATAAATATTTCCGGACGG 58.918 38.462 1.83 3.96 0.00 4.79
3710 5862 6.795114 CGGAATTCAATAAATATTTCCGGACG 59.205 38.462 1.83 0.00 33.92 4.79
3714 5866 6.795114 CGTCCGGAATTCAATAAATATTTCCG 59.205 38.462 5.23 13.40 36.86 4.30
3715 5867 7.040961 TCCGTCCGGAATTCAATAAATATTTCC 60.041 37.037 5.23 0.00 42.05 3.13
3716 5868 7.867752 TCCGTCCGGAATTCAATAAATATTTC 58.132 34.615 5.23 0.00 42.05 2.17
3717 5869 7.040686 CCTCCGTCCGGAATTCAATAAATATTT 60.041 37.037 5.23 5.89 44.66 1.40
3718 5870 6.430000 CCTCCGTCCGGAATTCAATAAATATT 59.570 38.462 5.23 0.00 44.66 1.28
3719 5871 5.938125 CCTCCGTCCGGAATTCAATAAATAT 59.062 40.000 5.23 0.00 44.66 1.28
3720 5872 5.302360 CCTCCGTCCGGAATTCAATAAATA 58.698 41.667 5.23 0.00 44.66 1.40
3721 5873 4.134563 CCTCCGTCCGGAATTCAATAAAT 58.865 43.478 5.23 0.00 44.66 1.40
3722 5874 3.537580 CCTCCGTCCGGAATTCAATAAA 58.462 45.455 5.23 0.00 44.66 1.40
3723 5875 2.158871 CCCTCCGTCCGGAATTCAATAA 60.159 50.000 5.23 0.00 44.66 1.40
3724 5876 1.414919 CCCTCCGTCCGGAATTCAATA 59.585 52.381 5.23 0.00 44.66 1.90
3725 5877 0.180406 CCCTCCGTCCGGAATTCAAT 59.820 55.000 5.23 0.00 44.66 2.57
3726 5878 0.905809 TCCCTCCGTCCGGAATTCAA 60.906 55.000 5.23 0.00 44.66 2.69
3727 5879 0.905809 TTCCCTCCGTCCGGAATTCA 60.906 55.000 5.23 0.00 44.66 2.57
3728 5880 0.468648 ATTCCCTCCGTCCGGAATTC 59.531 55.000 5.23 0.00 44.75 2.17
3729 5881 1.797320 TATTCCCTCCGTCCGGAATT 58.203 50.000 5.23 0.00 44.75 2.17
3730 5882 4.394102 ATTCCCTCCGTCCGGAAT 57.606 55.556 5.23 0.00 44.66 3.01
3731 5883 2.681319 TATATTCCCTCCGTCCGGAA 57.319 50.000 5.23 0.00 44.66 4.30
3732 5884 2.042026 TCATATATTCCCTCCGTCCGGA 59.958 50.000 0.00 0.00 42.90 5.14
3733 5885 2.453521 TCATATATTCCCTCCGTCCGG 58.546 52.381 0.00 0.00 0.00 5.14
3734 5886 4.737855 AATCATATATTCCCTCCGTCCG 57.262 45.455 0.00 0.00 0.00 4.79
3735 5887 5.880887 GGAAAATCATATATTCCCTCCGTCC 59.119 44.000 0.00 0.00 37.28 4.79
3736 5888 6.595716 CAGGAAAATCATATATTCCCTCCGTC 59.404 42.308 0.00 0.00 42.93 4.79
3737 5889 6.272324 TCAGGAAAATCATATATTCCCTCCGT 59.728 38.462 0.00 0.00 42.93 4.69
3738 5890 6.711277 TCAGGAAAATCATATATTCCCTCCG 58.289 40.000 0.00 0.00 42.93 4.63
3739 5891 7.694093 ACTCAGGAAAATCATATATTCCCTCC 58.306 38.462 0.00 0.00 42.93 4.30
3740 5892 9.579932 AAACTCAGGAAAATCATATATTCCCTC 57.420 33.333 0.00 0.00 42.93 4.30
3741 5893 9.942526 AAAACTCAGGAAAATCATATATTCCCT 57.057 29.630 0.00 0.00 42.93 4.20
3746 5898 9.807649 GCACAAAAACTCAGGAAAATCATATAT 57.192 29.630 0.00 0.00 0.00 0.86
3747 5899 7.967854 CGCACAAAAACTCAGGAAAATCATATA 59.032 33.333 0.00 0.00 0.00 0.86
3748 5900 6.808212 CGCACAAAAACTCAGGAAAATCATAT 59.192 34.615 0.00 0.00 0.00 1.78
3749 5901 6.016693 TCGCACAAAAACTCAGGAAAATCATA 60.017 34.615 0.00 0.00 0.00 2.15
3750 5902 4.984161 CGCACAAAAACTCAGGAAAATCAT 59.016 37.500 0.00 0.00 0.00 2.45
3751 5903 4.097135 TCGCACAAAAACTCAGGAAAATCA 59.903 37.500 0.00 0.00 0.00 2.57
3757 5909 1.946768 CCTTCGCACAAAAACTCAGGA 59.053 47.619 0.00 0.00 0.00 3.86
3791 5943 1.455773 ATGGATGGCGAGACTCCGA 60.456 57.895 0.00 0.00 31.36 4.55
3792 5944 1.006805 GATGGATGGCGAGACTCCG 60.007 63.158 0.00 0.00 31.36 4.63
3793 5945 0.755686 AAGATGGATGGCGAGACTCC 59.244 55.000 0.00 0.00 0.00 3.85
3794 5946 1.539929 CCAAGATGGATGGCGAGACTC 60.540 57.143 0.00 0.00 40.96 3.36
3795 5947 0.467384 CCAAGATGGATGGCGAGACT 59.533 55.000 0.00 0.00 40.96 3.24
3797 5949 2.914908 TCCAAGATGGATGGCGAGA 58.085 52.632 0.00 0.00 42.67 4.04
3805 5957 0.032515 TACCCGCTCTCCAAGATGGA 60.033 55.000 0.00 0.00 45.98 3.41
3812 5964 1.418637 ACAAGTTTTACCCGCTCTCCA 59.581 47.619 0.00 0.00 0.00 3.86
4016 6724 4.836825 TCAAGATGTGAAGAAGATGACCC 58.163 43.478 0.00 0.00 31.51 4.46
4021 6729 8.512956 CATGTCTTTTCAAGATGTGAAGAAGAT 58.487 33.333 12.48 2.24 46.85 2.40
4108 6816 8.964476 TGGGTTCAAGATCTCTGATAATTTAC 57.036 34.615 0.00 0.00 0.00 2.01
4120 6828 2.243221 CCCTTCCATGGGTTCAAGATCT 59.757 50.000 13.02 0.00 42.25 2.75
4129 6837 1.814292 ATTGTGCCCCTTCCATGGGT 61.814 55.000 13.02 0.00 45.70 4.51
4137 6845 3.756082 TGAAGGATTATTGTGCCCCTT 57.244 42.857 0.00 0.00 39.70 3.95
4142 6850 7.329471 GGAAACTTCTTTGAAGGATTATTGTGC 59.671 37.037 11.35 0.00 0.00 4.57
4143 6851 8.579863 AGGAAACTTCTTTGAAGGATTATTGTG 58.420 33.333 11.35 0.00 37.44 3.33
4153 6861 5.065988 TCCAAACGAGGAAACTTCTTTGAAG 59.934 40.000 5.85 5.85 44.43 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.