Multiple sequence alignment - TraesCS5B01G125200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G125200 chr5B 100.000 2663 0 0 1 2663 227830291 227832953 0.000000e+00 4918.0
1 TraesCS5B01G125200 chr5B 91.589 107 7 2 660 766 622495446 622495342 2.140000e-31 147.0
2 TraesCS5B01G125200 chr5B 92.157 102 5 3 664 764 613083491 613083590 9.940000e-30 141.0
3 TraesCS5B01G125200 chr5B 91.000 100 8 1 539 637 403926110 403926209 1.660000e-27 134.0
4 TraesCS5B01G125200 chr5D 96.198 1736 42 12 778 2496 213470353 213472081 0.000000e+00 2819.0
5 TraesCS5B01G125200 chr5D 96.512 86 1 1 2578 2663 213472079 213472162 9.940000e-30 141.0
6 TraesCS5B01G125200 chr5A 95.662 1729 51 8 778 2496 277718362 277720076 0.000000e+00 2756.0
7 TraesCS5B01G125200 chr5A 97.753 89 2 0 670 758 6596306 6596218 1.280000e-33 154.0
8 TraesCS5B01G125200 chr5A 97.674 86 2 0 2578 2663 277720074 277720159 5.940000e-32 148.0
9 TraesCS5B01G125200 chr6A 90.200 551 49 4 1 547 571799907 571799358 0.000000e+00 713.0
10 TraesCS5B01G125200 chr6A 95.960 99 3 1 2488 2585 51946461 51946559 2.740000e-35 159.0
11 TraesCS5B01G125200 chr1B 88.364 550 59 5 1 547 238677266 238676719 0.000000e+00 656.0
12 TraesCS5B01G125200 chr1B 95.789 95 2 2 663 757 592853612 592853520 4.590000e-33 152.0
13 TraesCS5B01G125200 chr2A 88.087 554 62 4 1 551 524084237 524084789 0.000000e+00 654.0
14 TraesCS5B01G125200 chr2A 82.810 541 87 6 1 536 66310829 66311368 1.850000e-131 479.0
15 TraesCS5B01G125200 chr2A 94.000 100 5 1 668 766 153361942 153361843 1.650000e-32 150.0
16 TraesCS5B01G125200 chr2A 90.909 110 7 3 2476 2582 193876445 193876554 7.680000e-31 145.0
17 TraesCS5B01G125200 chr2A 85.507 69 10 0 2595 2663 764097378 764097310 3.680000e-09 73.1
18 TraesCS5B01G125200 chr2D 88.036 560 55 10 1 552 88394025 88394580 0.000000e+00 652.0
19 TraesCS5B01G125200 chr2D 86.847 555 61 9 1 547 36035170 36034620 6.300000e-171 610.0
20 TraesCS5B01G125200 chr2D 93.137 102 5 2 668 769 612499290 612499191 5.940000e-32 148.0
21 TraesCS5B01G125200 chr3A 87.884 553 63 4 1 551 742033745 742034295 0.000000e+00 647.0
22 TraesCS5B01G125200 chr3A 91.429 105 7 2 659 762 648870542 648870439 2.760000e-30 143.0
23 TraesCS5B01G125200 chr1D 87.321 560 58 11 1 552 321635548 321634994 1.740000e-176 628.0
24 TraesCS5B01G125200 chr7D 86.429 560 64 10 1 552 615964241 615963686 1.050000e-168 603.0
25 TraesCS5B01G125200 chr6B 100.000 88 0 0 2494 2581 12974110 12974197 2.120000e-36 163.0
26 TraesCS5B01G125200 chr6B 90.909 110 8 2 668 777 672159166 672159273 2.140000e-31 147.0
27 TraesCS5B01G125200 chr6D 98.889 90 1 0 2494 2583 408688791 408688702 7.630000e-36 161.0
28 TraesCS5B01G125200 chr4A 97.849 93 2 0 2487 2579 460069163 460069255 7.630000e-36 161.0
29 TraesCS5B01G125200 chr7B 98.876 89 1 0 671 759 361147170 361147082 2.740000e-35 159.0
30 TraesCS5B01G125200 chr7B 92.233 103 8 0 2485 2587 528017288 528017186 2.140000e-31 147.0
31 TraesCS5B01G125200 chr7B 95.506 89 4 0 544 632 673976636 673976724 2.760000e-30 143.0
32 TraesCS5B01G125200 chr4D 98.876 89 1 0 670 758 116822000 116821912 2.740000e-35 159.0
33 TraesCS5B01G125200 chr4D 86.207 87 12 0 553 639 308859337 308859251 7.850000e-16 95.3
34 TraesCS5B01G125200 chr3B 94.949 99 3 2 2488 2586 232569306 232569402 1.280000e-33 154.0
35 TraesCS5B01G125200 chr3B 91.429 105 7 2 655 759 118309519 118309417 2.760000e-30 143.0
36 TraesCS5B01G125200 chr2B 94.000 100 4 2 2490 2588 748284742 748284644 1.650000e-32 150.0
37 TraesCS5B01G125200 chr7A 92.381 105 6 2 2480 2583 114027181 114027078 5.940000e-32 148.0
38 TraesCS5B01G125200 chr7A 88.983 118 7 4 647 759 171552149 171552033 9.940000e-30 141.0
39 TraesCS5B01G125200 chrUn 89.831 118 6 4 647 759 82710092 82709976 2.140000e-31 147.0
40 TraesCS5B01G125200 chr1A 88.889 117 8 5 665 778 94814861 94814747 3.570000e-29 139.0
41 TraesCS5B01G125200 chr1A 84.694 98 13 2 546 643 468411562 468411467 2.180000e-16 97.1
42 TraesCS5B01G125200 chr1A 85.556 90 11 2 554 643 468462725 468462638 2.820000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G125200 chr5B 227830291 227832953 2662 False 4918 4918 100.000 1 2663 1 chr5B.!!$F1 2662
1 TraesCS5B01G125200 chr5D 213470353 213472162 1809 False 1480 2819 96.355 778 2663 2 chr5D.!!$F1 1885
2 TraesCS5B01G125200 chr5A 277718362 277720159 1797 False 1452 2756 96.668 778 2663 2 chr5A.!!$F1 1885
3 TraesCS5B01G125200 chr6A 571799358 571799907 549 True 713 713 90.200 1 547 1 chr6A.!!$R1 546
4 TraesCS5B01G125200 chr1B 238676719 238677266 547 True 656 656 88.364 1 547 1 chr1B.!!$R1 546
5 TraesCS5B01G125200 chr2A 524084237 524084789 552 False 654 654 88.087 1 551 1 chr2A.!!$F3 550
6 TraesCS5B01G125200 chr2A 66310829 66311368 539 False 479 479 82.810 1 536 1 chr2A.!!$F1 535
7 TraesCS5B01G125200 chr2D 88394025 88394580 555 False 652 652 88.036 1 552 1 chr2D.!!$F1 551
8 TraesCS5B01G125200 chr2D 36034620 36035170 550 True 610 610 86.847 1 547 1 chr2D.!!$R1 546
9 TraesCS5B01G125200 chr3A 742033745 742034295 550 False 647 647 87.884 1 551 1 chr3A.!!$F1 550
10 TraesCS5B01G125200 chr1D 321634994 321635548 554 True 628 628 87.321 1 552 1 chr1D.!!$R1 551
11 TraesCS5B01G125200 chr7D 615963686 615964241 555 True 603 603 86.429 1 552 1 chr7D.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 634 0.034337 CCCGGGAGAACAACTCGAAA 59.966 55.0 18.48 0.0 45.76 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2443 2476 1.269831 CCTGGCCGTCAGCTATAGAAC 60.27 57.143 3.21 0.0 42.05 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.869832 CAGATGAGCATACAGTTCTGGTG 59.130 47.826 4.82 4.39 0.00 4.17
135 136 1.496060 TATGGCAGAGGAATCACCGT 58.504 50.000 0.00 0.00 44.74 4.83
276 277 0.379669 CATGCCGCTCTCATGTTTCC 59.620 55.000 0.00 0.00 37.22 3.13
430 432 5.999600 TCTTTCATCATCTGCTCAACTTCAA 59.000 36.000 0.00 0.00 0.00 2.69
448 450 1.139654 CAATGATTCCCGAGGAGCTCA 59.860 52.381 17.19 0.00 32.51 4.26
552 564 3.125573 TCGACACGGGCGAGAGAG 61.126 66.667 0.01 0.00 33.33 3.20
553 565 4.180946 CGACACGGGCGAGAGAGG 62.181 72.222 0.00 0.00 0.00 3.69
554 566 3.827898 GACACGGGCGAGAGAGGG 61.828 72.222 0.00 0.00 0.00 4.30
559 571 3.787001 GGGCGAGAGAGGGGGTTG 61.787 72.222 0.00 0.00 0.00 3.77
560 572 2.683933 GGCGAGAGAGGGGGTTGA 60.684 66.667 0.00 0.00 0.00 3.18
561 573 2.066999 GGCGAGAGAGGGGGTTGAT 61.067 63.158 0.00 0.00 0.00 2.57
562 574 1.443828 GCGAGAGAGGGGGTTGATC 59.556 63.158 0.00 0.00 0.00 2.92
563 575 1.736586 CGAGAGAGGGGGTTGATCG 59.263 63.158 0.00 0.00 0.00 3.69
564 576 1.739338 CGAGAGAGGGGGTTGATCGG 61.739 65.000 0.00 0.00 0.00 4.18
565 577 2.034048 GAGAGAGGGGGTTGATCGGC 62.034 65.000 0.00 0.00 0.00 5.54
566 578 3.447025 GAGAGGGGGTTGATCGGCG 62.447 68.421 0.00 0.00 0.00 6.46
567 579 3.467226 GAGGGGGTTGATCGGCGA 61.467 66.667 13.87 13.87 0.00 5.54
568 580 2.768344 AGGGGGTTGATCGGCGAT 60.768 61.111 24.26 24.26 0.00 4.58
569 581 1.458777 AGGGGGTTGATCGGCGATA 60.459 57.895 24.05 5.12 0.00 2.92
570 582 1.004918 GGGGGTTGATCGGCGATAG 60.005 63.158 24.05 0.00 0.00 2.08
571 583 1.004918 GGGGTTGATCGGCGATAGG 60.005 63.158 24.05 0.00 0.00 2.57
572 584 1.004918 GGGTTGATCGGCGATAGGG 60.005 63.158 24.05 0.00 0.00 3.53
573 585 1.004918 GGTTGATCGGCGATAGGGG 60.005 63.158 24.05 0.00 0.00 4.79
574 586 1.469335 GGTTGATCGGCGATAGGGGA 61.469 60.000 24.05 4.26 0.00 4.81
575 587 0.038159 GTTGATCGGCGATAGGGGAG 60.038 60.000 24.05 0.00 0.00 4.30
576 588 1.816863 TTGATCGGCGATAGGGGAGC 61.817 60.000 24.05 8.97 0.00 4.70
577 589 2.203640 ATCGGCGATAGGGGAGCA 60.204 61.111 22.68 0.00 0.00 4.26
578 590 1.816863 GATCGGCGATAGGGGAGCAA 61.817 60.000 24.05 0.00 0.00 3.91
579 591 1.407656 ATCGGCGATAGGGGAGCAAA 61.408 55.000 22.68 0.00 0.00 3.68
580 592 1.153249 CGGCGATAGGGGAGCAAAA 60.153 57.895 0.00 0.00 0.00 2.44
581 593 0.535102 CGGCGATAGGGGAGCAAAAT 60.535 55.000 0.00 0.00 0.00 1.82
582 594 1.239347 GGCGATAGGGGAGCAAAATC 58.761 55.000 0.00 0.00 0.00 2.17
583 595 1.202818 GGCGATAGGGGAGCAAAATCT 60.203 52.381 0.00 0.00 0.00 2.40
584 596 2.147150 GCGATAGGGGAGCAAAATCTC 58.853 52.381 0.00 0.00 0.00 2.75
585 597 2.408050 CGATAGGGGAGCAAAATCTCG 58.592 52.381 0.00 0.00 33.98 4.04
586 598 2.035961 CGATAGGGGAGCAAAATCTCGA 59.964 50.000 0.00 0.00 33.98 4.04
587 599 2.981859 TAGGGGAGCAAAATCTCGAC 57.018 50.000 0.00 0.00 33.98 4.20
588 600 0.108138 AGGGGAGCAAAATCTCGACG 60.108 55.000 0.00 0.00 33.98 5.12
589 601 1.090052 GGGGAGCAAAATCTCGACGG 61.090 60.000 0.00 0.00 33.98 4.79
590 602 1.706287 GGGAGCAAAATCTCGACGGC 61.706 60.000 0.00 0.00 33.98 5.68
591 603 1.345176 GAGCAAAATCTCGACGGCG 59.655 57.895 2.87 2.87 39.35 6.46
592 604 2.025359 GAGCAAAATCTCGACGGCGG 62.025 60.000 12.58 0.62 38.28 6.13
593 605 2.399611 CAAAATCTCGACGGCGGC 59.600 61.111 12.58 7.52 38.28 6.53
594 606 3.186047 AAAATCTCGACGGCGGCG 61.186 61.111 32.25 32.25 38.28 6.46
595 607 3.636313 AAAATCTCGACGGCGGCGA 62.636 57.895 37.10 37.10 38.28 5.54
596 608 3.636313 AAATCTCGACGGCGGCGAA 62.636 57.895 38.41 27.69 37.32 4.70
597 609 4.554363 ATCTCGACGGCGGCGAAG 62.554 66.667 38.41 29.44 37.32 3.79
599 611 4.554363 CTCGACGGCGGCGAAGAT 62.554 66.667 38.41 16.22 37.32 2.40
600 612 4.547905 TCGACGGCGGCGAAGATC 62.548 66.667 37.95 23.05 38.28 2.75
610 622 4.286320 CGAAGATCGCCCCGGGAG 62.286 72.222 26.32 16.47 31.14 4.30
611 623 2.838225 GAAGATCGCCCCGGGAGA 60.838 66.667 26.32 21.75 35.71 3.71
612 624 2.365105 AAGATCGCCCCGGGAGAA 60.365 61.111 26.32 6.59 34.75 2.87
613 625 2.646117 GAAGATCGCCCCGGGAGAAC 62.646 65.000 26.32 19.25 34.75 3.01
614 626 3.467226 GATCGCCCCGGGAGAACA 61.467 66.667 26.32 0.12 34.75 3.18
615 627 3.006728 ATCGCCCCGGGAGAACAA 61.007 61.111 26.32 0.56 34.75 2.83
616 628 3.325201 ATCGCCCCGGGAGAACAAC 62.325 63.158 26.32 0.56 34.75 3.32
617 629 4.016706 CGCCCCGGGAGAACAACT 62.017 66.667 26.32 0.00 0.00 3.16
618 630 2.046217 GCCCCGGGAGAACAACTC 60.046 66.667 26.32 0.00 44.24 3.01
619 631 2.264794 CCCCGGGAGAACAACTCG 59.735 66.667 26.32 0.00 45.76 4.18
620 632 2.280552 CCCCGGGAGAACAACTCGA 61.281 63.158 26.32 0.00 45.76 4.04
621 633 1.669440 CCCGGGAGAACAACTCGAA 59.331 57.895 18.48 0.00 45.76 3.71
622 634 0.034337 CCCGGGAGAACAACTCGAAA 59.966 55.000 18.48 0.00 45.76 3.46
623 635 1.145803 CCGGGAGAACAACTCGAAAC 58.854 55.000 0.00 0.00 45.76 2.78
624 636 1.145803 CGGGAGAACAACTCGAAACC 58.854 55.000 0.00 0.00 45.76 3.27
625 637 1.520494 GGGAGAACAACTCGAAACCC 58.480 55.000 0.00 0.00 45.76 4.11
626 638 1.071857 GGGAGAACAACTCGAAACCCT 59.928 52.381 0.00 0.00 45.76 4.34
627 639 2.301009 GGGAGAACAACTCGAAACCCTA 59.699 50.000 0.00 0.00 45.76 3.53
628 640 3.244318 GGGAGAACAACTCGAAACCCTAA 60.244 47.826 0.00 0.00 45.76 2.69
629 641 3.744942 GGAGAACAACTCGAAACCCTAAC 59.255 47.826 0.00 0.00 45.76 2.34
630 642 4.502777 GGAGAACAACTCGAAACCCTAACT 60.503 45.833 0.00 0.00 45.76 2.24
631 643 5.279156 GGAGAACAACTCGAAACCCTAACTA 60.279 44.000 0.00 0.00 45.76 2.24
632 644 6.165700 AGAACAACTCGAAACCCTAACTAA 57.834 37.500 0.00 0.00 0.00 2.24
633 645 6.585416 AGAACAACTCGAAACCCTAACTAAA 58.415 36.000 0.00 0.00 0.00 1.85
634 646 6.704937 AGAACAACTCGAAACCCTAACTAAAG 59.295 38.462 0.00 0.00 0.00 1.85
635 647 5.303165 ACAACTCGAAACCCTAACTAAAGG 58.697 41.667 0.00 0.00 36.30 3.11
646 658 5.297569 CCTAACTAAAGGGAAGGATCTGG 57.702 47.826 0.00 0.00 32.55 3.86
647 659 4.969359 CCTAACTAAAGGGAAGGATCTGGA 59.031 45.833 0.00 0.00 32.55 3.86
648 660 5.428783 CCTAACTAAAGGGAAGGATCTGGAA 59.571 44.000 0.00 0.00 32.55 3.53
649 661 5.443230 AACTAAAGGGAAGGATCTGGAAG 57.557 43.478 0.00 0.00 0.00 3.46
650 662 3.783082 ACTAAAGGGAAGGATCTGGAAGG 59.217 47.826 0.00 0.00 0.00 3.46
651 663 0.922626 AAGGGAAGGATCTGGAAGGC 59.077 55.000 0.00 0.00 0.00 4.35
652 664 0.253347 AGGGAAGGATCTGGAAGGCA 60.253 55.000 0.00 0.00 0.00 4.75
653 665 0.849417 GGGAAGGATCTGGAAGGCAT 59.151 55.000 0.00 0.00 0.00 4.40
654 666 1.478288 GGGAAGGATCTGGAAGGCATG 60.478 57.143 0.00 0.00 0.00 4.06
655 667 1.213926 GGAAGGATCTGGAAGGCATGT 59.786 52.381 0.00 0.00 0.00 3.21
656 668 2.295885 GAAGGATCTGGAAGGCATGTG 58.704 52.381 0.00 0.00 0.00 3.21
657 669 1.588239 AGGATCTGGAAGGCATGTGA 58.412 50.000 0.00 0.00 0.00 3.58
658 670 2.133520 AGGATCTGGAAGGCATGTGAT 58.866 47.619 0.00 0.00 0.00 3.06
659 671 2.512896 AGGATCTGGAAGGCATGTGATT 59.487 45.455 0.00 0.00 0.00 2.57
660 672 3.053095 AGGATCTGGAAGGCATGTGATTT 60.053 43.478 0.00 0.00 0.00 2.17
661 673 3.703052 GGATCTGGAAGGCATGTGATTTT 59.297 43.478 0.00 0.00 0.00 1.82
662 674 4.441079 GGATCTGGAAGGCATGTGATTTTG 60.441 45.833 0.00 0.00 0.00 2.44
663 675 3.499338 TCTGGAAGGCATGTGATTTTGT 58.501 40.909 0.00 0.00 0.00 2.83
664 676 4.661222 TCTGGAAGGCATGTGATTTTGTA 58.339 39.130 0.00 0.00 0.00 2.41
665 677 4.458989 TCTGGAAGGCATGTGATTTTGTAC 59.541 41.667 0.00 0.00 0.00 2.90
666 678 4.406456 TGGAAGGCATGTGATTTTGTACT 58.594 39.130 0.00 0.00 0.00 2.73
667 679 5.565509 TGGAAGGCATGTGATTTTGTACTA 58.434 37.500 0.00 0.00 0.00 1.82
668 680 6.186957 TGGAAGGCATGTGATTTTGTACTAT 58.813 36.000 0.00 0.00 0.00 2.12
669 681 6.318648 TGGAAGGCATGTGATTTTGTACTATC 59.681 38.462 0.00 0.00 0.00 2.08
670 682 6.543831 GGAAGGCATGTGATTTTGTACTATCT 59.456 38.462 0.00 0.00 0.00 1.98
671 683 7.715249 GGAAGGCATGTGATTTTGTACTATCTA 59.285 37.037 0.00 0.00 0.00 1.98
672 684 8.438676 AAGGCATGTGATTTTGTACTATCTAC 57.561 34.615 0.00 0.00 0.00 2.59
673 685 7.796054 AGGCATGTGATTTTGTACTATCTACT 58.204 34.615 0.00 0.00 0.00 2.57
674 686 7.928706 AGGCATGTGATTTTGTACTATCTACTC 59.071 37.037 0.00 0.00 0.00 2.59
675 687 7.171678 GGCATGTGATTTTGTACTATCTACTCC 59.828 40.741 0.00 0.00 0.00 3.85
676 688 7.171678 GCATGTGATTTTGTACTATCTACTCCC 59.828 40.741 0.00 0.00 0.00 4.30
677 689 7.973048 TGTGATTTTGTACTATCTACTCCCT 57.027 36.000 0.00 0.00 0.00 4.20
678 690 8.008513 TGTGATTTTGTACTATCTACTCCCTC 57.991 38.462 0.00 0.00 0.00 4.30
679 691 7.069578 TGTGATTTTGTACTATCTACTCCCTCC 59.930 40.741 0.00 0.00 0.00 4.30
680 692 6.264744 TGATTTTGTACTATCTACTCCCTCCG 59.735 42.308 0.00 0.00 0.00 4.63
681 693 4.785346 TTGTACTATCTACTCCCTCCGT 57.215 45.455 0.00 0.00 0.00 4.69
682 694 4.785346 TGTACTATCTACTCCCTCCGTT 57.215 45.455 0.00 0.00 0.00 4.44
683 695 4.712476 TGTACTATCTACTCCCTCCGTTC 58.288 47.826 0.00 0.00 0.00 3.95
684 696 3.226682 ACTATCTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
685 697 2.512896 ACTATCTACTCCCTCCGTTCCA 59.487 50.000 0.00 0.00 0.00 3.53
686 698 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
687 699 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
688 700 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
689 701 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
690 702 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
691 703 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
692 704 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
693 705 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
694 706 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
695 707 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
696 708 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
697 709 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
698 710 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
699 711 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
700 712 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
701 713 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
702 714 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
703 715 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
704 716 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
705 717 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
731 743 9.716531 ATACTAAAGTTAGTACAAAGTTGGGTC 57.283 33.333 12.07 0.00 45.86 4.46
732 744 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
733 745 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
734 746 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
735 747 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
736 748 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
737 749 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
738 750 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
739 751 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
740 752 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
741 753 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
742 754 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
743 755 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
744 756 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
745 757 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
746 758 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
747 759 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
748 760 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
749 761 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
750 762 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
751 763 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
752 764 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
753 765 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
754 766 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
755 767 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
756 768 6.363167 TCTATTTTGAAACGGAGGGAGTAA 57.637 37.500 0.00 0.00 0.00 2.24
757 769 6.954232 TCTATTTTGAAACGGAGGGAGTAAT 58.046 36.000 0.00 0.00 0.00 1.89
758 770 7.399634 TCTATTTTGAAACGGAGGGAGTAATT 58.600 34.615 0.00 0.00 0.00 1.40
759 771 6.911250 ATTTTGAAACGGAGGGAGTAATTT 57.089 33.333 0.00 0.00 0.00 1.82
760 772 5.952526 TTTGAAACGGAGGGAGTAATTTC 57.047 39.130 0.00 0.00 0.00 2.17
761 773 4.903045 TGAAACGGAGGGAGTAATTTCT 57.097 40.909 0.00 0.00 0.00 2.52
762 774 4.575885 TGAAACGGAGGGAGTAATTTCTG 58.424 43.478 0.00 0.00 0.00 3.02
763 775 4.285003 TGAAACGGAGGGAGTAATTTCTGA 59.715 41.667 0.00 0.00 0.00 3.27
764 776 5.045869 TGAAACGGAGGGAGTAATTTCTGAT 60.046 40.000 0.00 0.00 0.00 2.90
765 777 4.408182 ACGGAGGGAGTAATTTCTGATG 57.592 45.455 0.00 0.00 0.00 3.07
766 778 3.134458 CGGAGGGAGTAATTTCTGATGC 58.866 50.000 0.00 0.00 0.00 3.91
767 779 3.181461 CGGAGGGAGTAATTTCTGATGCT 60.181 47.826 0.00 0.00 0.00 3.79
768 780 4.039245 CGGAGGGAGTAATTTCTGATGCTA 59.961 45.833 0.00 0.00 0.00 3.49
769 781 5.279708 CGGAGGGAGTAATTTCTGATGCTAT 60.280 44.000 0.00 0.00 0.00 2.97
770 782 6.071334 CGGAGGGAGTAATTTCTGATGCTATA 60.071 42.308 0.00 0.00 0.00 1.31
771 783 7.364232 CGGAGGGAGTAATTTCTGATGCTATAT 60.364 40.741 0.00 0.00 0.00 0.86
772 784 8.982723 GGAGGGAGTAATTTCTGATGCTATATA 58.017 37.037 0.00 0.00 0.00 0.86
824 836 1.751927 CACAGCCCCATGGAGAAGC 60.752 63.158 15.22 10.57 0.00 3.86
1233 1255 4.104417 GACTCTGCGTCGCCGTCT 62.104 66.667 15.88 0.00 36.15 4.18
1235 1257 3.805307 CTCTGCGTCGCCGTCTCT 61.805 66.667 15.88 0.00 36.15 3.10
1425 1453 2.125326 CCGGGACATCCTAGCGTCA 61.125 63.158 0.00 0.00 33.66 4.35
1673 1701 2.182030 GCCGTGACTTCTCCGGAG 59.818 66.667 26.32 26.32 44.41 4.63
1707 1737 1.813513 CGATTCTTGTTGCACCTCCT 58.186 50.000 0.00 0.00 0.00 3.69
1862 1892 9.178427 GATAGCAACAAGAGAAATGATTAATGC 57.822 33.333 0.00 0.00 0.00 3.56
1919 1949 7.285858 TGAACTCATGATTGATGCAATAATGGA 59.714 33.333 14.46 4.56 40.98 3.41
1920 1950 7.591421 ACTCATGATTGATGCAATAATGGAA 57.409 32.000 14.46 0.37 40.98 3.53
1921 1951 8.014070 ACTCATGATTGATGCAATAATGGAAA 57.986 30.769 14.46 0.00 40.98 3.13
1922 1952 8.141909 ACTCATGATTGATGCAATAATGGAAAG 58.858 33.333 14.46 9.14 40.98 2.62
1923 1953 7.438564 TCATGATTGATGCAATAATGGAAAGG 58.561 34.615 14.46 0.00 40.98 3.11
1924 1954 7.288158 TCATGATTGATGCAATAATGGAAAGGA 59.712 33.333 14.46 0.00 40.98 3.36
1925 1955 7.421087 TGATTGATGCAATAATGGAAAGGAA 57.579 32.000 0.00 0.00 33.90 3.36
1930 1960 7.049133 TGATGCAATAATGGAAAGGAAAATGG 58.951 34.615 0.00 0.00 0.00 3.16
1966 1996 6.664816 AGCATGTGGAGGAAAATAATTGAAGA 59.335 34.615 0.00 0.00 0.00 2.87
1970 2000 9.710900 ATGTGGAGGAAAATAATTGAAGAAAAC 57.289 29.630 0.00 0.00 0.00 2.43
2186 2217 6.240615 CCATCCCTCTCCTCTAATAGTCCTTA 60.241 46.154 0.00 0.00 0.00 2.69
2438 2471 9.657419 TTGTATCTTATCATATGATTCGTGCAT 57.343 29.630 22.84 9.61 36.05 3.96
2443 2476 5.857822 ATCATATGATTCGTGCATGTGAG 57.142 39.130 12.62 0.00 43.73 3.51
2457 2490 3.733224 GCATGTGAGTTCTATAGCTGACG 59.267 47.826 0.00 0.00 0.00 4.35
2459 2492 2.099263 TGTGAGTTCTATAGCTGACGGC 59.901 50.000 0.00 0.00 42.19 5.68
2501 2534 9.614792 ATTTAACAGATTACAACATACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
2502 2535 5.615925 ACAGATTACAACATACTCCCTCC 57.384 43.478 0.00 0.00 0.00 4.30
2503 2536 4.099573 ACAGATTACAACATACTCCCTCCG 59.900 45.833 0.00 0.00 0.00 4.63
2504 2537 4.099573 CAGATTACAACATACTCCCTCCGT 59.900 45.833 0.00 0.00 0.00 4.69
2505 2538 4.715297 AGATTACAACATACTCCCTCCGTT 59.285 41.667 0.00 0.00 0.00 4.44
2506 2539 4.460948 TTACAACATACTCCCTCCGTTC 57.539 45.455 0.00 0.00 0.00 3.95
2507 2540 1.553704 ACAACATACTCCCTCCGTTCC 59.446 52.381 0.00 0.00 0.00 3.62
2508 2541 1.553248 CAACATACTCCCTCCGTTCCA 59.447 52.381 0.00 0.00 0.00 3.53
2509 2542 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
2510 2543 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
2511 2544 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2512 2545 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2513 2546 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2514 2547 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2515 2548 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2516 2549 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2517 2550 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2518 2551 3.118038 TCCCTCCGTTCCAAAATAGATGG 60.118 47.826 0.00 0.00 39.41 3.51
2519 2552 2.618709 CCTCCGTTCCAAAATAGATGGC 59.381 50.000 0.00 0.00 37.88 4.40
2520 2553 3.545703 CTCCGTTCCAAAATAGATGGCT 58.454 45.455 0.00 0.00 37.88 4.75
2521 2554 3.541632 TCCGTTCCAAAATAGATGGCTC 58.458 45.455 0.00 0.00 37.88 4.70
2522 2555 3.054728 TCCGTTCCAAAATAGATGGCTCA 60.055 43.478 0.00 0.00 37.88 4.26
2523 2556 3.694072 CCGTTCCAAAATAGATGGCTCAA 59.306 43.478 0.00 0.00 37.88 3.02
2524 2557 4.438744 CCGTTCCAAAATAGATGGCTCAAC 60.439 45.833 0.00 0.00 37.88 3.18
2525 2558 4.396166 CGTTCCAAAATAGATGGCTCAACT 59.604 41.667 0.00 0.00 37.88 3.16
2526 2559 5.106157 CGTTCCAAAATAGATGGCTCAACTT 60.106 40.000 0.00 0.00 37.88 2.66
2527 2560 6.570378 CGTTCCAAAATAGATGGCTCAACTTT 60.570 38.462 0.00 0.00 37.88 2.66
2528 2561 7.361713 CGTTCCAAAATAGATGGCTCAACTTTA 60.362 37.037 0.00 0.00 37.88 1.85
2529 2562 8.470002 GTTCCAAAATAGATGGCTCAACTTTAT 58.530 33.333 0.00 0.00 37.88 1.40
2530 2563 9.693739 TTCCAAAATAGATGGCTCAACTTTATA 57.306 29.630 0.00 0.00 37.88 0.98
2531 2564 9.120538 TCCAAAATAGATGGCTCAACTTTATAC 57.879 33.333 0.00 0.00 37.88 1.47
2532 2565 8.902806 CCAAAATAGATGGCTCAACTTTATACA 58.097 33.333 0.00 0.00 0.00 2.29
2536 2569 9.686683 AATAGATGGCTCAACTTTATACAAACT 57.313 29.630 0.00 0.00 0.00 2.66
2537 2570 9.686683 ATAGATGGCTCAACTTTATACAAACTT 57.313 29.630 0.00 0.00 0.00 2.66
2538 2571 8.409358 AGATGGCTCAACTTTATACAAACTTT 57.591 30.769 0.00 0.00 0.00 2.66
2539 2572 9.515226 AGATGGCTCAACTTTATACAAACTTTA 57.485 29.630 0.00 0.00 0.00 1.85
2540 2573 9.774742 GATGGCTCAACTTTATACAAACTTTAG 57.225 33.333 0.00 0.00 0.00 1.85
2541 2574 8.685838 TGGCTCAACTTTATACAAACTTTAGT 57.314 30.769 0.00 0.00 0.00 2.24
2542 2575 9.781633 TGGCTCAACTTTATACAAACTTTAGTA 57.218 29.630 0.00 0.00 0.00 1.82
2553 2586 8.756486 ATACAAACTTTAGTACAAAGTTGGGT 57.244 30.769 25.41 24.73 46.33 4.51
2554 2587 7.092137 ACAAACTTTAGTACAAAGTTGGGTC 57.908 36.000 25.41 0.00 46.33 4.46
2555 2588 6.660094 ACAAACTTTAGTACAAAGTTGGGTCA 59.340 34.615 25.41 0.00 46.33 4.02
2556 2589 7.340999 ACAAACTTTAGTACAAAGTTGGGTCAT 59.659 33.333 25.41 14.19 46.33 3.06
2557 2590 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
2558 2591 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
2559 2592 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
2560 2593 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
2561 2594 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
2562 2595 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
2563 2596 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2564 2597 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2565 2598 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2566 2599 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2567 2600 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2568 2601 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2569 2602 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2570 2603 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2571 2604 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2572 2605 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2573 2606 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2574 2607 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2575 2608 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2576 2609 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2577 2610 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2578 2611 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2579 2612 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 5.239525 ACTGTTAAGCTTGAGACAATCAACC 59.760 40.000 9.86 0.00 43.09 3.77
125 126 1.221021 GGGGAGACACGGTGATTCC 59.779 63.158 16.29 18.65 0.00 3.01
135 136 1.630369 CATGGAACTTCAGGGGAGACA 59.370 52.381 0.00 0.00 0.00 3.41
293 294 2.902705 AACACCACGAAGAGCTACAA 57.097 45.000 0.00 0.00 0.00 2.41
352 354 3.681897 GTGATCTTCGATGAGCAAGTTGT 59.318 43.478 19.26 0.00 34.00 3.32
355 357 3.599730 TGTGATCTTCGATGAGCAAGT 57.400 42.857 19.26 0.00 34.00 3.16
430 432 1.415659 CTTGAGCTCCTCGGGAATCAT 59.584 52.381 12.15 0.00 30.81 2.45
547 559 2.066999 GCCGATCAACCCCCTCTCT 61.067 63.158 0.00 0.00 0.00 3.10
551 563 1.458777 TATCGCCGATCAACCCCCT 60.459 57.895 1.25 0.00 0.00 4.79
552 564 1.004918 CTATCGCCGATCAACCCCC 60.005 63.158 1.25 0.00 0.00 5.40
553 565 1.004918 CCTATCGCCGATCAACCCC 60.005 63.158 1.25 0.00 0.00 4.95
554 566 1.004918 CCCTATCGCCGATCAACCC 60.005 63.158 1.25 0.00 0.00 4.11
555 567 1.004918 CCCCTATCGCCGATCAACC 60.005 63.158 1.25 0.00 0.00 3.77
556 568 0.038159 CTCCCCTATCGCCGATCAAC 60.038 60.000 1.25 0.00 0.00 3.18
557 569 1.816863 GCTCCCCTATCGCCGATCAA 61.817 60.000 1.25 0.00 0.00 2.57
558 570 2.276116 GCTCCCCTATCGCCGATCA 61.276 63.158 1.25 0.00 0.00 2.92
559 571 1.816863 TTGCTCCCCTATCGCCGATC 61.817 60.000 1.25 0.00 0.00 3.69
560 572 1.407656 TTTGCTCCCCTATCGCCGAT 61.408 55.000 4.45 4.45 0.00 4.18
561 573 1.618876 TTTTGCTCCCCTATCGCCGA 61.619 55.000 0.00 0.00 0.00 5.54
562 574 0.535102 ATTTTGCTCCCCTATCGCCG 60.535 55.000 0.00 0.00 0.00 6.46
563 575 1.202818 AGATTTTGCTCCCCTATCGCC 60.203 52.381 0.00 0.00 0.00 5.54
564 576 2.147150 GAGATTTTGCTCCCCTATCGC 58.853 52.381 0.00 0.00 0.00 4.58
565 577 2.035961 TCGAGATTTTGCTCCCCTATCG 59.964 50.000 0.00 0.00 0.00 2.92
566 578 3.394719 GTCGAGATTTTGCTCCCCTATC 58.605 50.000 0.00 0.00 0.00 2.08
567 579 2.224066 CGTCGAGATTTTGCTCCCCTAT 60.224 50.000 0.00 0.00 0.00 2.57
568 580 1.136305 CGTCGAGATTTTGCTCCCCTA 59.864 52.381 0.00 0.00 0.00 3.53
569 581 0.108138 CGTCGAGATTTTGCTCCCCT 60.108 55.000 0.00 0.00 0.00 4.79
570 582 1.090052 CCGTCGAGATTTTGCTCCCC 61.090 60.000 0.00 0.00 0.00 4.81
571 583 1.706287 GCCGTCGAGATTTTGCTCCC 61.706 60.000 0.00 0.00 0.00 4.30
572 584 1.716172 GCCGTCGAGATTTTGCTCC 59.284 57.895 0.00 0.00 0.00 4.70
573 585 1.345176 CGCCGTCGAGATTTTGCTC 59.655 57.895 0.00 0.00 38.10 4.26
574 586 2.100631 CCGCCGTCGAGATTTTGCT 61.101 57.895 0.00 0.00 38.10 3.91
575 587 2.399611 CCGCCGTCGAGATTTTGC 59.600 61.111 0.00 0.00 38.10 3.68
576 588 2.399611 GCCGCCGTCGAGATTTTG 59.600 61.111 0.00 0.00 38.10 2.44
577 589 3.186047 CGCCGCCGTCGAGATTTT 61.186 61.111 0.00 0.00 38.10 1.82
578 590 3.636313 TTCGCCGCCGTCGAGATTT 62.636 57.895 0.00 0.00 37.26 2.17
579 591 4.124351 TTCGCCGCCGTCGAGATT 62.124 61.111 0.00 0.00 37.26 2.40
580 592 4.554363 CTTCGCCGCCGTCGAGAT 62.554 66.667 0.00 0.00 37.26 2.75
582 594 4.554363 ATCTTCGCCGCCGTCGAG 62.554 66.667 0.00 0.00 37.26 4.04
583 595 4.547905 GATCTTCGCCGCCGTCGA 62.548 66.667 0.00 0.00 38.10 4.20
593 605 4.286320 CTCCCGGGGCGATCTTCG 62.286 72.222 23.50 0.00 43.89 3.79
594 606 2.432300 TTCTCCCGGGGCGATCTTC 61.432 63.158 23.50 0.00 0.00 2.87
595 607 2.365105 TTCTCCCGGGGCGATCTT 60.365 61.111 23.50 0.00 0.00 2.40
596 608 3.155167 GTTCTCCCGGGGCGATCT 61.155 66.667 23.50 0.00 0.00 2.75
597 609 3.026431 TTGTTCTCCCGGGGCGATC 62.026 63.158 23.50 16.37 0.00 3.69
598 610 3.006728 TTGTTCTCCCGGGGCGAT 61.007 61.111 23.50 0.00 0.00 4.58
599 611 4.011517 GTTGTTCTCCCGGGGCGA 62.012 66.667 23.50 15.25 0.00 5.54
600 612 3.952628 GAGTTGTTCTCCCGGGGCG 62.953 68.421 23.50 12.84 37.22 6.13
601 613 2.046217 GAGTTGTTCTCCCGGGGC 60.046 66.667 23.50 9.48 37.22 5.80
602 614 1.823169 TTCGAGTTGTTCTCCCGGGG 61.823 60.000 23.50 12.05 39.84 5.73
603 615 0.034337 TTTCGAGTTGTTCTCCCGGG 59.966 55.000 16.85 16.85 39.84 5.73
604 616 1.145803 GTTTCGAGTTGTTCTCCCGG 58.854 55.000 0.00 0.00 39.84 5.73
605 617 1.145803 GGTTTCGAGTTGTTCTCCCG 58.854 55.000 0.00 0.00 39.84 5.14
606 618 1.071857 AGGGTTTCGAGTTGTTCTCCC 59.928 52.381 0.00 0.00 39.84 4.30
607 619 2.545537 AGGGTTTCGAGTTGTTCTCC 57.454 50.000 0.00 0.00 39.84 3.71
608 620 4.629092 AGTTAGGGTTTCGAGTTGTTCTC 58.371 43.478 0.00 0.00 39.62 2.87
609 621 4.684484 AGTTAGGGTTTCGAGTTGTTCT 57.316 40.909 0.00 0.00 0.00 3.01
610 622 6.073385 CCTTTAGTTAGGGTTTCGAGTTGTTC 60.073 42.308 0.00 0.00 0.00 3.18
611 623 5.761726 CCTTTAGTTAGGGTTTCGAGTTGTT 59.238 40.000 0.00 0.00 0.00 2.83
612 624 5.303165 CCTTTAGTTAGGGTTTCGAGTTGT 58.697 41.667 0.00 0.00 0.00 3.32
613 625 5.857822 CCTTTAGTTAGGGTTTCGAGTTG 57.142 43.478 0.00 0.00 0.00 3.16
624 636 4.969359 TCCAGATCCTTCCCTTTAGTTAGG 59.031 45.833 0.00 0.00 34.92 2.69
625 637 6.408662 CCTTCCAGATCCTTCCCTTTAGTTAG 60.409 46.154 0.00 0.00 0.00 2.34
626 638 5.428783 CCTTCCAGATCCTTCCCTTTAGTTA 59.571 44.000 0.00 0.00 0.00 2.24
627 639 4.228438 CCTTCCAGATCCTTCCCTTTAGTT 59.772 45.833 0.00 0.00 0.00 2.24
628 640 3.783082 CCTTCCAGATCCTTCCCTTTAGT 59.217 47.826 0.00 0.00 0.00 2.24
629 641 3.434310 GCCTTCCAGATCCTTCCCTTTAG 60.434 52.174 0.00 0.00 0.00 1.85
630 642 2.509964 GCCTTCCAGATCCTTCCCTTTA 59.490 50.000 0.00 0.00 0.00 1.85
631 643 1.286257 GCCTTCCAGATCCTTCCCTTT 59.714 52.381 0.00 0.00 0.00 3.11
632 644 0.922626 GCCTTCCAGATCCTTCCCTT 59.077 55.000 0.00 0.00 0.00 3.95
633 645 0.253347 TGCCTTCCAGATCCTTCCCT 60.253 55.000 0.00 0.00 0.00 4.20
634 646 0.849417 ATGCCTTCCAGATCCTTCCC 59.151 55.000 0.00 0.00 0.00 3.97
635 647 1.213926 ACATGCCTTCCAGATCCTTCC 59.786 52.381 0.00 0.00 0.00 3.46
636 648 2.092753 TCACATGCCTTCCAGATCCTTC 60.093 50.000 0.00 0.00 0.00 3.46
637 649 1.918262 TCACATGCCTTCCAGATCCTT 59.082 47.619 0.00 0.00 0.00 3.36
638 650 1.588239 TCACATGCCTTCCAGATCCT 58.412 50.000 0.00 0.00 0.00 3.24
639 651 2.653234 ATCACATGCCTTCCAGATCC 57.347 50.000 0.00 0.00 0.00 3.36
640 652 4.159135 ACAAAATCACATGCCTTCCAGATC 59.841 41.667 0.00 0.00 0.00 2.75
641 653 4.091549 ACAAAATCACATGCCTTCCAGAT 58.908 39.130 0.00 0.00 0.00 2.90
642 654 3.499338 ACAAAATCACATGCCTTCCAGA 58.501 40.909 0.00 0.00 0.00 3.86
643 655 3.947910 ACAAAATCACATGCCTTCCAG 57.052 42.857 0.00 0.00 0.00 3.86
644 656 4.406456 AGTACAAAATCACATGCCTTCCA 58.594 39.130 0.00 0.00 0.00 3.53
645 657 6.543831 AGATAGTACAAAATCACATGCCTTCC 59.456 38.462 0.00 0.00 0.00 3.46
646 658 7.559590 AGATAGTACAAAATCACATGCCTTC 57.440 36.000 0.00 0.00 0.00 3.46
647 659 8.267894 AGTAGATAGTACAAAATCACATGCCTT 58.732 33.333 0.00 0.00 0.00 4.35
648 660 7.796054 AGTAGATAGTACAAAATCACATGCCT 58.204 34.615 0.00 0.00 0.00 4.75
649 661 7.171678 GGAGTAGATAGTACAAAATCACATGCC 59.828 40.741 0.00 0.00 0.00 4.40
650 662 7.171678 GGGAGTAGATAGTACAAAATCACATGC 59.828 40.741 0.00 0.00 0.00 4.06
651 663 8.424918 AGGGAGTAGATAGTACAAAATCACATG 58.575 37.037 0.00 0.00 0.00 3.21
652 664 8.554490 AGGGAGTAGATAGTACAAAATCACAT 57.446 34.615 0.00 0.00 0.00 3.21
653 665 7.069578 GGAGGGAGTAGATAGTACAAAATCACA 59.930 40.741 0.00 0.00 0.00 3.58
654 666 7.435305 GGAGGGAGTAGATAGTACAAAATCAC 58.565 42.308 0.00 0.00 0.00 3.06
655 667 6.264744 CGGAGGGAGTAGATAGTACAAAATCA 59.735 42.308 0.00 0.00 0.00 2.57
656 668 6.264970 ACGGAGGGAGTAGATAGTACAAAATC 59.735 42.308 0.00 0.00 0.00 2.17
657 669 6.134754 ACGGAGGGAGTAGATAGTACAAAAT 58.865 40.000 0.00 0.00 0.00 1.82
658 670 5.513233 ACGGAGGGAGTAGATAGTACAAAA 58.487 41.667 0.00 0.00 0.00 2.44
659 671 5.121380 ACGGAGGGAGTAGATAGTACAAA 57.879 43.478 0.00 0.00 0.00 2.83
660 672 4.785346 ACGGAGGGAGTAGATAGTACAA 57.215 45.455 0.00 0.00 0.00 2.41
661 673 4.445448 GGAACGGAGGGAGTAGATAGTACA 60.445 50.000 0.00 0.00 0.00 2.90
662 674 4.071423 GGAACGGAGGGAGTAGATAGTAC 58.929 52.174 0.00 0.00 0.00 2.73
663 675 3.718434 TGGAACGGAGGGAGTAGATAGTA 59.282 47.826 0.00 0.00 0.00 1.82
664 676 2.512896 TGGAACGGAGGGAGTAGATAGT 59.487 50.000 0.00 0.00 0.00 2.12
665 677 3.225177 TGGAACGGAGGGAGTAGATAG 57.775 52.381 0.00 0.00 0.00 2.08
666 678 3.675348 TTGGAACGGAGGGAGTAGATA 57.325 47.619 0.00 0.00 0.00 1.98
667 679 2.544844 TTGGAACGGAGGGAGTAGAT 57.455 50.000 0.00 0.00 0.00 1.98
668 680 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
669 681 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
670 682 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
671 683 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
672 684 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
673 685 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
674 686 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
675 687 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
676 688 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
677 689 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
678 690 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
679 691 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
705 717 9.716531 GACCCAACTTTGTACTAACTTTAGTAT 57.283 33.333 11.18 0.00 45.11 2.12
706 718 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
707 719 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
708 720 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
709 721 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
710 722 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
711 723 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
712 724 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
713 725 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
714 726 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
715 727 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
716 728 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
717 729 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
718 730 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
719 731 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
720 732 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
721 733 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
722 734 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
723 735 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
724 736 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
725 737 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
726 738 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
727 739 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
728 740 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
729 741 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
730 742 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
731 743 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
732 744 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
733 745 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
734 746 7.625828 AATTACTCCCTCCGTTTCAAAATAG 57.374 36.000 0.00 0.00 0.00 1.73
735 747 7.886446 AGAAATTACTCCCTCCGTTTCAAAATA 59.114 33.333 0.00 0.00 0.00 1.40
736 748 6.719829 AGAAATTACTCCCTCCGTTTCAAAAT 59.280 34.615 0.00 0.00 0.00 1.82
737 749 6.016610 CAGAAATTACTCCCTCCGTTTCAAAA 60.017 38.462 0.00 0.00 0.00 2.44
738 750 5.472137 CAGAAATTACTCCCTCCGTTTCAAA 59.528 40.000 0.00 0.00 0.00 2.69
739 751 5.001232 CAGAAATTACTCCCTCCGTTTCAA 58.999 41.667 0.00 0.00 0.00 2.69
740 752 4.285003 TCAGAAATTACTCCCTCCGTTTCA 59.715 41.667 0.00 0.00 0.00 2.69
741 753 4.828829 TCAGAAATTACTCCCTCCGTTTC 58.171 43.478 0.00 0.00 0.00 2.78
742 754 4.903045 TCAGAAATTACTCCCTCCGTTT 57.097 40.909 0.00 0.00 0.00 3.60
743 755 4.770795 CATCAGAAATTACTCCCTCCGTT 58.229 43.478 0.00 0.00 0.00 4.44
744 756 3.432326 GCATCAGAAATTACTCCCTCCGT 60.432 47.826 0.00 0.00 0.00 4.69
745 757 3.134458 GCATCAGAAATTACTCCCTCCG 58.866 50.000 0.00 0.00 0.00 4.63
746 758 4.429854 AGCATCAGAAATTACTCCCTCC 57.570 45.455 0.00 0.00 0.00 4.30
760 772 9.239002 GGCGTTTTAGACTATATATAGCATCAG 57.761 37.037 18.00 0.00 33.68 2.90
761 773 8.195436 GGGCGTTTTAGACTATATATAGCATCA 58.805 37.037 18.00 0.75 33.68 3.07
762 774 8.195436 TGGGCGTTTTAGACTATATATAGCATC 58.805 37.037 18.00 10.16 33.68 3.91
763 775 8.074613 TGGGCGTTTTAGACTATATATAGCAT 57.925 34.615 18.00 10.25 33.68 3.79
764 776 7.470935 TGGGCGTTTTAGACTATATATAGCA 57.529 36.000 18.00 3.01 33.68 3.49
765 777 8.767478 TTTGGGCGTTTTAGACTATATATAGC 57.233 34.615 18.00 11.51 33.68 2.97
768 780 9.227777 GGATTTTGGGCGTTTTAGACTATATAT 57.772 33.333 0.00 0.00 0.00 0.86
769 781 7.662669 GGGATTTTGGGCGTTTTAGACTATATA 59.337 37.037 0.00 0.00 0.00 0.86
770 782 6.489022 GGGATTTTGGGCGTTTTAGACTATAT 59.511 38.462 0.00 0.00 0.00 0.86
771 783 5.824097 GGGATTTTGGGCGTTTTAGACTATA 59.176 40.000 0.00 0.00 0.00 1.31
772 784 4.643334 GGGATTTTGGGCGTTTTAGACTAT 59.357 41.667 0.00 0.00 0.00 2.12
773 785 4.011698 GGGATTTTGGGCGTTTTAGACTA 58.988 43.478 0.00 0.00 0.00 2.59
774 786 2.823747 GGGATTTTGGGCGTTTTAGACT 59.176 45.455 0.00 0.00 0.00 3.24
775 787 2.094390 GGGGATTTTGGGCGTTTTAGAC 60.094 50.000 0.00 0.00 0.00 2.59
776 788 2.172679 GGGGATTTTGGGCGTTTTAGA 58.827 47.619 0.00 0.00 0.00 2.10
824 836 1.275657 GCCACGAGTGAACGTTGTG 59.724 57.895 5.00 7.16 44.76 3.33
927 939 0.033011 TGGAGGGAGGAGTGAGTAGC 60.033 60.000 0.00 0.00 0.00 3.58
1069 1091 2.022035 AGAGGAGAGAGAGAGGGAGAGA 60.022 54.545 0.00 0.00 0.00 3.10
1075 1097 1.421646 GGGAGAGAGGAGAGAGAGAGG 59.578 61.905 0.00 0.00 0.00 3.69
1126 1148 7.555914 TGGTGGATTGATAAGAATCGAATCAAA 59.444 33.333 12.18 0.00 41.52 2.69
1233 1255 4.063967 CCGCGGTAGTGGTGCAGA 62.064 66.667 19.50 0.00 42.91 4.26
1353 1381 0.877649 CGTTGCTGGGGATCTCGATG 60.878 60.000 0.00 0.00 0.00 3.84
1362 1390 3.642778 ATCGTCGTCGTTGCTGGGG 62.643 63.158 1.33 0.00 38.33 4.96
1605 1633 2.925170 AACAGGAGGCGGCAGAGT 60.925 61.111 13.08 0.61 0.00 3.24
1690 1720 3.228188 TCAAGGAGGTGCAACAAGAAT 57.772 42.857 3.64 0.00 39.98 2.40
1707 1737 9.277783 AGAAAAGAGAAATCGAAGAGAATTCAA 57.722 29.630 8.44 0.00 43.63 2.69
1862 1892 9.250624 GACTAATCAGCTTTGTTAGTAGTATGG 57.749 37.037 12.62 0.00 38.42 2.74
1919 1949 5.682212 GCTTGTGTTCTGACCATTTTCCTTT 60.682 40.000 0.00 0.00 0.00 3.11
1920 1950 4.202151 GCTTGTGTTCTGACCATTTTCCTT 60.202 41.667 0.00 0.00 0.00 3.36
1921 1951 3.319122 GCTTGTGTTCTGACCATTTTCCT 59.681 43.478 0.00 0.00 0.00 3.36
1922 1952 3.068024 TGCTTGTGTTCTGACCATTTTCC 59.932 43.478 0.00 0.00 0.00 3.13
1923 1953 4.305989 TGCTTGTGTTCTGACCATTTTC 57.694 40.909 0.00 0.00 0.00 2.29
1924 1954 4.099881 ACATGCTTGTGTTCTGACCATTTT 59.900 37.500 4.14 0.00 33.85 1.82
1925 1955 3.638160 ACATGCTTGTGTTCTGACCATTT 59.362 39.130 4.14 0.00 33.85 2.32
2146 2177 3.093814 GGGATGGAATTTTACACCGGTT 58.906 45.455 2.97 0.00 0.00 4.44
2186 2217 1.270839 CCCCGGCGAACTCATAATGAT 60.271 52.381 9.30 0.00 0.00 2.45
2438 2471 2.099263 GCCGTCAGCTATAGAACTCACA 59.901 50.000 3.21 0.00 38.99 3.58
2443 2476 1.269831 CCTGGCCGTCAGCTATAGAAC 60.270 57.143 3.21 0.00 42.05 3.01
2457 2490 3.515602 AATATCCTGAACATCCTGGCC 57.484 47.619 0.00 0.00 0.00 5.36
2459 2492 7.282585 TCTGTTAAATATCCTGAACATCCTGG 58.717 38.462 0.00 0.00 31.75 4.45
2496 2529 3.118038 CCATCTATTTTGGAACGGAGGGA 60.118 47.826 0.00 0.00 36.26 4.20
2497 2530 3.214328 CCATCTATTTTGGAACGGAGGG 58.786 50.000 0.00 0.00 36.26 4.30
2498 2531 2.618709 GCCATCTATTTTGGAACGGAGG 59.381 50.000 0.00 0.00 36.26 4.30
2499 2532 3.545703 AGCCATCTATTTTGGAACGGAG 58.454 45.455 0.00 0.00 36.26 4.63
2500 2533 3.054728 TGAGCCATCTATTTTGGAACGGA 60.055 43.478 0.00 0.00 36.26 4.69
2501 2534 3.278574 TGAGCCATCTATTTTGGAACGG 58.721 45.455 0.00 0.00 36.26 4.44
2502 2535 4.396166 AGTTGAGCCATCTATTTTGGAACG 59.604 41.667 0.00 0.00 36.26 3.95
2503 2536 5.904362 AGTTGAGCCATCTATTTTGGAAC 57.096 39.130 0.00 0.00 36.26 3.62
2504 2537 6.916360 AAAGTTGAGCCATCTATTTTGGAA 57.084 33.333 0.00 0.00 36.26 3.53
2505 2538 9.120538 GTATAAAGTTGAGCCATCTATTTTGGA 57.879 33.333 0.00 0.00 36.26 3.53
2506 2539 8.902806 TGTATAAAGTTGAGCCATCTATTTTGG 58.097 33.333 0.00 0.00 37.31 3.28
2510 2543 9.686683 AGTTTGTATAAAGTTGAGCCATCTATT 57.313 29.630 0.00 0.00 0.00 1.73
2511 2544 9.686683 AAGTTTGTATAAAGTTGAGCCATCTAT 57.313 29.630 4.41 0.00 37.88 1.98
2512 2545 9.515226 AAAGTTTGTATAAAGTTGAGCCATCTA 57.485 29.630 5.86 0.00 38.94 1.98
2513 2546 8.409358 AAAGTTTGTATAAAGTTGAGCCATCT 57.591 30.769 5.86 0.00 38.94 2.90
2514 2547 9.774742 CTAAAGTTTGTATAAAGTTGAGCCATC 57.225 33.333 5.86 0.00 38.94 3.51
2515 2548 9.297037 ACTAAAGTTTGTATAAAGTTGAGCCAT 57.703 29.630 14.02 0.00 39.70 4.40
2516 2549 8.685838 ACTAAAGTTTGTATAAAGTTGAGCCA 57.314 30.769 14.02 0.00 39.70 4.75
2527 2560 9.850198 ACCCAACTTTGTACTAAAGTTTGTATA 57.150 29.630 22.53 0.00 45.20 1.47
2528 2561 8.756486 ACCCAACTTTGTACTAAAGTTTGTAT 57.244 30.769 22.53 13.05 45.20 2.29
2529 2562 7.828223 TGACCCAACTTTGTACTAAAGTTTGTA 59.172 33.333 22.53 11.98 45.20 2.41
2530 2563 6.660094 TGACCCAACTTTGTACTAAAGTTTGT 59.340 34.615 22.53 21.42 45.20 2.83
2531 2564 7.090953 TGACCCAACTTTGTACTAAAGTTTG 57.909 36.000 22.53 20.08 45.20 2.93
2532 2565 7.778382 AGATGACCCAACTTTGTACTAAAGTTT 59.222 33.333 22.53 14.46 45.20 2.66
2534 2567 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
2535 2568 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
2536 2569 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
2537 2570 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2538 2571 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2539 2572 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2540 2573 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2541 2574 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2542 2575 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2543 2576 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2544 2577 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2545 2578 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2546 2579 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2547 2580 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2548 2581 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2549 2582 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2550 2583 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2551 2584 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2552 2585 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2553 2586 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2554 2587 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2555 2588 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2556 2589 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2557 2590 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2558 2591 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
2559 2592 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
2560 2593 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
2561 2594 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2562 2595 1.946984 ATGTACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
2563 2596 2.024655 AGTATGTACTCCCTCCGTTCCA 60.025 50.000 0.00 0.00 0.00 3.53
2564 2597 2.664015 AGTATGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
2565 2598 3.698040 TCAAGTATGTACTCCCTCCGTTC 59.302 47.826 0.00 0.00 34.99 3.95
2566 2599 3.705051 TCAAGTATGTACTCCCTCCGTT 58.295 45.455 0.00 0.00 34.99 4.44
2567 2600 3.377253 TCAAGTATGTACTCCCTCCGT 57.623 47.619 0.00 0.00 34.99 4.69
2568 2601 4.939052 AATCAAGTATGTACTCCCTCCG 57.061 45.455 0.00 0.00 34.99 4.63
2569 2602 9.256228 TCATATAATCAAGTATGTACTCCCTCC 57.744 37.037 0.00 0.00 34.99 4.30
2571 2604 9.830186 ACTCATATAATCAAGTATGTACTCCCT 57.170 33.333 0.00 0.00 34.99 4.20
2572 2605 9.862371 CACTCATATAATCAAGTATGTACTCCC 57.138 37.037 0.00 0.00 34.99 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.