Multiple sequence alignment - TraesCS5B01G124800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G124800 chr5B 100.000 4053 0 0 1 4053 226430802 226434854 0.000000e+00 7485.0
1 TraesCS5B01G124800 chr5B 97.826 92 2 0 3712 3803 103333101 103333010 4.190000e-35 159.0
2 TraesCS5B01G124800 chr5A 94.211 1192 39 11 2385 3563 275650654 275651828 0.000000e+00 1792.0
3 TraesCS5B01G124800 chr5A 94.386 1140 39 8 763 1885 275649320 275650451 0.000000e+00 1727.0
4 TraesCS5B01G124800 chr5A 97.013 770 21 2 1 769 452435720 452434952 0.000000e+00 1293.0
5 TraesCS5B01G124800 chr5A 92.547 161 9 1 1921 2078 275650451 275650611 1.130000e-55 228.0
6 TraesCS5B01G124800 chr5A 98.837 86 1 0 3561 3646 275652102 275652187 1.950000e-33 154.0
7 TraesCS5B01G124800 chr5A 96.825 63 0 2 3650 3712 275652467 275652527 1.990000e-18 104.0
8 TraesCS5B01G124800 chr5A 100.000 33 0 0 2066 2098 275650625 275650657 1.220000e-05 62.1
9 TraesCS5B01G124800 chr5A 100.000 30 0 0 3872 3901 576401019 576401048 5.660000e-04 56.5
10 TraesCS5B01G124800 chr5D 95.120 1045 24 8 855 1885 212452622 212453653 0.000000e+00 1622.0
11 TraesCS5B01G124800 chr5D 93.464 918 20 8 2385 3281 212453830 212454728 0.000000e+00 1327.0
12 TraesCS5B01G124800 chr5D 96.618 414 8 5 3303 3712 212455046 212455457 0.000000e+00 682.0
13 TraesCS5B01G124800 chr5D 89.619 289 28 2 2109 2396 232378567 232378854 2.300000e-97 366.0
14 TraesCS5B01G124800 chr5D 89.583 288 29 1 2109 2395 40916809 40917096 8.280000e-97 364.0
15 TraesCS5B01G124800 chr5D 95.652 184 5 1 1921 2101 212453653 212453836 3.960000e-75 292.0
16 TraesCS5B01G124800 chr5D 98.182 55 1 0 3805 3859 212455441 212455495 3.330000e-16 97.1
17 TraesCS5B01G124800 chr7A 98.427 763 10 2 1 762 679160531 679159770 0.000000e+00 1341.0
18 TraesCS5B01G124800 chr7A 97.906 764 14 2 1 763 597471938 597472700 0.000000e+00 1321.0
19 TraesCS5B01G124800 chr7A 97.143 35 0 1 3868 3901 510965923 510965957 1.570000e-04 58.4
20 TraesCS5B01G124800 chr4B 98.663 748 8 2 1 747 551260829 551260083 0.000000e+00 1325.0
21 TraesCS5B01G124800 chr4B 91.273 275 23 1 2109 2382 621443852 621443578 1.380000e-99 374.0
22 TraesCS5B01G124800 chr4A 98.663 748 8 2 1 747 595420367 595421113 0.000000e+00 1325.0
23 TraesCS5B01G124800 chr4A 97.403 770 14 6 1 766 606793144 606793911 0.000000e+00 1306.0
24 TraesCS5B01G124800 chr3B 98.529 748 9 2 1 747 201349963 201349217 0.000000e+00 1319.0
25 TraesCS5B01G124800 chr3B 97.619 756 13 3 1 755 819356791 819356040 0.000000e+00 1291.0
26 TraesCS5B01G124800 chr3B 89.825 285 28 1 2109 2392 394089205 394089489 8.280000e-97 364.0
27 TraesCS5B01G124800 chr3B 91.579 95 8 0 3711 3805 814374696 814374790 9.140000e-27 132.0
28 TraesCS5B01G124800 chr6B 98.131 749 11 3 1 747 640574630 640575377 0.000000e+00 1303.0
29 TraesCS5B01G124800 chr3D 91.367 278 22 2 2109 2385 87135732 87136008 2.960000e-101 379.0
30 TraesCS5B01G124800 chr3D 90.526 95 8 1 3711 3805 509233138 509233231 1.530000e-24 124.0
31 TraesCS5B01G124800 chr6A 90.559 286 25 2 2109 2393 575366172 575366456 1.060000e-100 377.0
32 TraesCS5B01G124800 chr2B 90.210 286 26 2 2109 2393 480355578 480355294 4.950000e-99 372.0
33 TraesCS5B01G124800 chr2B 97.917 96 1 1 3711 3805 760110981 760110886 9.010000e-37 165.0
34 TraesCS5B01G124800 chr2B 88.889 99 10 1 3707 3805 793577398 793577301 1.980000e-23 121.0
35 TraesCS5B01G124800 chr7B 90.681 279 25 1 2109 2386 726807918 726807640 1.780000e-98 370.0
36 TraesCS5B01G124800 chr1B 89.825 285 28 1 2101 2384 515978948 515979232 8.280000e-97 364.0
37 TraesCS5B01G124800 chr7D 92.632 95 7 0 3711 3805 105253385 105253479 1.960000e-28 137.0
38 TraesCS5B01G124800 chr2D 91.000 100 9 0 3954 4053 540321704 540321605 7.070000e-28 135.0
39 TraesCS5B01G124800 chr2D 100.000 29 0 0 3873 3901 576276820 576276792 2.000000e-03 54.7
40 TraesCS5B01G124800 chr6D 91.398 93 7 1 3711 3803 143675922 143675831 4.250000e-25 126.0
41 TraesCS5B01G124800 chr3A 90.526 95 9 0 3711 3805 114541169 114541263 4.250000e-25 126.0
42 TraesCS5B01G124800 chr2A 90.323 93 8 1 3711 3803 419186195 419186286 1.980000e-23 121.0
43 TraesCS5B01G124800 chr2A 100.000 29 0 0 3873 3901 596250108 596250136 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G124800 chr5B 226430802 226434854 4052 False 7485.00 7485 100.000000 1 4053 1 chr5B.!!$F1 4052
1 TraesCS5B01G124800 chr5A 452434952 452435720 768 True 1293.00 1293 97.013000 1 769 1 chr5A.!!$R1 768
2 TraesCS5B01G124800 chr5A 275649320 275652527 3207 False 677.85 1792 96.134333 763 3712 6 chr5A.!!$F2 2949
3 TraesCS5B01G124800 chr5D 212452622 212455495 2873 False 804.02 1622 95.807200 855 3859 5 chr5D.!!$F3 3004
4 TraesCS5B01G124800 chr7A 679159770 679160531 761 True 1341.00 1341 98.427000 1 762 1 chr7A.!!$R1 761
5 TraesCS5B01G124800 chr7A 597471938 597472700 762 False 1321.00 1321 97.906000 1 763 1 chr7A.!!$F2 762
6 TraesCS5B01G124800 chr4B 551260083 551260829 746 True 1325.00 1325 98.663000 1 747 1 chr4B.!!$R1 746
7 TraesCS5B01G124800 chr4A 595420367 595421113 746 False 1325.00 1325 98.663000 1 747 1 chr4A.!!$F1 746
8 TraesCS5B01G124800 chr4A 606793144 606793911 767 False 1306.00 1306 97.403000 1 766 1 chr4A.!!$F2 765
9 TraesCS5B01G124800 chr3B 201349217 201349963 746 True 1319.00 1319 98.529000 1 747 1 chr3B.!!$R1 746
10 TraesCS5B01G124800 chr3B 819356040 819356791 751 True 1291.00 1291 97.619000 1 755 1 chr3B.!!$R2 754
11 TraesCS5B01G124800 chr6B 640574630 640575377 747 False 1303.00 1303 98.131000 1 747 1 chr6B.!!$F1 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 362 0.031721 CTTCTATACGCGGGGTGGAC 59.968 60.0 12.47 0.0 0.00 4.02 F
1855 1881 0.249996 GCACAAGGCTGCAACCAAAT 60.250 50.0 9.23 0.0 40.25 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 1963 0.249868 AGCAGCAGTAACGCAGAACA 60.250 50.0 0.00 0.0 0.00 3.18 R
3810 4744 0.244721 GCTGACATGAAGGCCAAACC 59.755 55.0 5.01 0.0 39.61 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
360 362 0.031721 CTTCTATACGCGGGGTGGAC 59.968 60.000 12.47 0.00 0.00 4.02
664 667 2.764269 CTGAAAGTAGGGGATGGAGGA 58.236 52.381 0.00 0.00 0.00 3.71
775 781 5.948742 AAACTTCCCTTGAATTTTCCACA 57.051 34.783 0.00 0.00 30.17 4.17
786 792 9.143631 CCTTGAATTTTCCACAAAGATACAATC 57.856 33.333 0.00 0.00 0.00 2.67
819 825 4.590918 TGAGTACTCCAAAACAAACACCA 58.409 39.130 20.11 0.00 0.00 4.17
918 924 3.555966 AGGAGAACAACCCACAGAAAAG 58.444 45.455 0.00 0.00 0.00 2.27
980 986 4.584638 TCCCAACTATAAATGCACACCT 57.415 40.909 0.00 0.00 0.00 4.00
981 987 4.523083 TCCCAACTATAAATGCACACCTC 58.477 43.478 0.00 0.00 0.00 3.85
982 988 3.632145 CCCAACTATAAATGCACACCTCC 59.368 47.826 0.00 0.00 0.00 4.30
983 989 4.269183 CCAACTATAAATGCACACCTCCA 58.731 43.478 0.00 0.00 0.00 3.86
984 990 4.096382 CCAACTATAAATGCACACCTCCAC 59.904 45.833 0.00 0.00 0.00 4.02
985 991 3.886123 ACTATAAATGCACACCTCCACC 58.114 45.455 0.00 0.00 0.00 4.61
1027 1033 2.652113 CCTCCTCCCTCCCTCCCTT 61.652 68.421 0.00 0.00 0.00 3.95
1259 1266 4.479993 CTCGGCAGCAAGGAGGGG 62.480 72.222 0.00 0.00 0.00 4.79
1384 1397 6.239204 GGGGTTTTGGTTGGTTATATATGCTC 60.239 42.308 0.00 0.00 0.00 4.26
1412 1425 2.262471 GATCGAGGTGGCGTACGTGT 62.262 60.000 17.90 0.00 0.00 4.49
1468 1481 4.752879 CCTGTGGTGTACGGCGGG 62.753 72.222 13.24 0.00 34.15 6.13
1578 1604 4.593956 ACTGCTCCTCCCTTCTTTTAATG 58.406 43.478 0.00 0.00 0.00 1.90
1583 1609 5.755849 CTCCTCCCTTCTTTTAATGCCTAA 58.244 41.667 0.00 0.00 0.00 2.69
1615 1641 2.588027 TTTCGTTTTCCCCTTGTTGC 57.412 45.000 0.00 0.00 0.00 4.17
1616 1642 1.475403 TTCGTTTTCCCCTTGTTGCA 58.525 45.000 0.00 0.00 0.00 4.08
1855 1881 0.249996 GCACAAGGCTGCAACCAAAT 60.250 50.000 9.23 0.00 40.25 2.32
1872 1898 2.420058 AATCTCCGGCCAAAGGTAAG 57.580 50.000 2.24 0.00 0.00 2.34
1896 1922 4.814294 CGCCTCACCCTGCCGTAC 62.814 72.222 0.00 0.00 0.00 3.67
1897 1923 4.814294 GCCTCACCCTGCCGTACG 62.814 72.222 8.69 8.69 0.00 3.67
1898 1924 4.143333 CCTCACCCTGCCGTACGG 62.143 72.222 30.06 30.06 38.57 4.02
1908 1934 2.728817 CCGTACGGCAGAGGATCC 59.271 66.667 23.44 2.48 33.66 3.36
1909 1935 1.828660 CCGTACGGCAGAGGATCCT 60.829 63.158 23.44 16.13 33.66 3.24
1910 1936 1.655329 CGTACGGCAGAGGATCCTC 59.345 63.158 31.27 31.27 43.03 3.71
1911 1937 1.655329 GTACGGCAGAGGATCCTCG 59.345 63.158 31.51 26.20 46.90 4.63
1912 1938 1.102222 GTACGGCAGAGGATCCTCGT 61.102 60.000 31.51 27.68 46.90 4.18
1913 1939 0.818445 TACGGCAGAGGATCCTCGTC 60.818 60.000 31.51 25.76 46.90 4.20
1914 1940 2.851071 CGGCAGAGGATCCTCGTCC 61.851 68.421 31.51 30.77 46.90 4.79
1920 1946 3.524346 AGGATCCTCGTCCTCTTCC 57.476 57.895 9.02 0.00 45.51 3.46
1932 1958 3.877508 CGTCCTCTTCCTTGTTTTCTTGT 59.122 43.478 0.00 0.00 0.00 3.16
1934 1960 4.640647 GTCCTCTTCCTTGTTTTCTTGTGT 59.359 41.667 0.00 0.00 0.00 3.72
1937 1963 5.358160 CCTCTTCCTTGTTTTCTTGTGTTCT 59.642 40.000 0.00 0.00 0.00 3.01
1957 1983 0.164647 GTTCTGCGTTACTGCTGCTG 59.835 55.000 4.89 4.89 34.22 4.41
2099 2154 4.469657 TGTTTTCCTTGGCATGAAGTAGT 58.530 39.130 0.00 0.00 0.00 2.73
2100 2155 5.626142 TGTTTTCCTTGGCATGAAGTAGTA 58.374 37.500 0.00 0.00 0.00 1.82
2101 2156 5.705441 TGTTTTCCTTGGCATGAAGTAGTAG 59.295 40.000 0.00 0.00 0.00 2.57
2102 2157 5.499004 TTTCCTTGGCATGAAGTAGTAGT 57.501 39.130 0.00 0.00 0.00 2.73
2103 2158 6.614694 TTTCCTTGGCATGAAGTAGTAGTA 57.385 37.500 0.00 0.00 0.00 1.82
2104 2159 5.593679 TCCTTGGCATGAAGTAGTAGTAC 57.406 43.478 0.00 0.00 0.00 2.73
2105 2160 5.269991 TCCTTGGCATGAAGTAGTAGTACT 58.730 41.667 8.14 8.14 41.61 2.73
2106 2161 5.360144 TCCTTGGCATGAAGTAGTAGTACTC 59.640 44.000 10.69 5.67 38.66 2.59
2107 2162 5.361285 CCTTGGCATGAAGTAGTAGTACTCT 59.639 44.000 10.69 1.43 38.66 3.24
2108 2163 6.127310 CCTTGGCATGAAGTAGTAGTACTCTT 60.127 42.308 10.69 9.94 38.66 2.85
2109 2164 7.068348 CCTTGGCATGAAGTAGTAGTACTCTTA 59.932 40.741 10.69 1.56 38.66 2.10
2110 2165 7.949690 TGGCATGAAGTAGTAGTACTCTTAA 57.050 36.000 10.69 4.34 38.66 1.85
2111 2166 7.997482 TGGCATGAAGTAGTAGTACTCTTAAG 58.003 38.462 10.69 0.00 38.66 1.85
2112 2167 7.614583 TGGCATGAAGTAGTAGTACTCTTAAGT 59.385 37.037 10.69 0.00 38.66 2.24
2113 2168 8.130469 GGCATGAAGTAGTAGTACTCTTAAGTC 58.870 40.741 10.69 4.60 38.66 3.01
2114 2169 8.675504 GCATGAAGTAGTAGTACTCTTAAGTCA 58.324 37.037 10.69 9.74 38.66 3.41
2127 2182 9.974750 GTACTCTTAAGTCATTTTAGATTGTGC 57.025 33.333 1.63 0.00 36.92 4.57
2128 2183 8.621532 ACTCTTAAGTCATTTTAGATTGTGCA 57.378 30.769 1.63 0.00 0.00 4.57
2129 2184 8.507249 ACTCTTAAGTCATTTTAGATTGTGCAC 58.493 33.333 10.75 10.75 0.00 4.57
2130 2185 7.816640 TCTTAAGTCATTTTAGATTGTGCACC 58.183 34.615 15.69 0.00 0.00 5.01
2131 2186 4.685169 AGTCATTTTAGATTGTGCACCG 57.315 40.909 15.69 0.00 0.00 4.94
2132 2187 3.119849 AGTCATTTTAGATTGTGCACCGC 60.120 43.478 15.69 3.33 0.00 5.68
2133 2188 2.159585 TCATTTTAGATTGTGCACCGCG 60.160 45.455 15.69 0.00 0.00 6.46
2134 2189 1.514003 TTTTAGATTGTGCACCGCGA 58.486 45.000 15.69 0.00 0.00 5.87
2135 2190 0.793861 TTTAGATTGTGCACCGCGAC 59.206 50.000 15.69 0.00 0.00 5.19
2136 2191 1.017177 TTAGATTGTGCACCGCGACC 61.017 55.000 15.69 0.00 0.00 4.79
2137 2192 2.161078 TAGATTGTGCACCGCGACCA 62.161 55.000 15.69 0.00 0.00 4.02
2138 2193 2.593148 ATTGTGCACCGCGACCAA 60.593 55.556 15.69 0.00 0.00 3.67
2139 2194 2.513065 GATTGTGCACCGCGACCAAG 62.513 60.000 15.69 0.00 0.00 3.61
2140 2195 3.741830 TTGTGCACCGCGACCAAGA 62.742 57.895 15.69 0.00 0.00 3.02
2141 2196 2.970324 GTGCACCGCGACCAAGAA 60.970 61.111 8.23 0.00 0.00 2.52
2142 2197 2.203084 TGCACCGCGACCAAGAAA 60.203 55.556 8.23 0.00 0.00 2.52
2143 2198 2.250939 TGCACCGCGACCAAGAAAG 61.251 57.895 8.23 0.00 0.00 2.62
2144 2199 1.959226 GCACCGCGACCAAGAAAGA 60.959 57.895 8.23 0.00 0.00 2.52
2145 2200 1.901650 GCACCGCGACCAAGAAAGAG 61.902 60.000 8.23 0.00 0.00 2.85
2146 2201 0.600255 CACCGCGACCAAGAAAGAGT 60.600 55.000 8.23 0.00 0.00 3.24
2147 2202 0.963962 ACCGCGACCAAGAAAGAGTA 59.036 50.000 8.23 0.00 0.00 2.59
2148 2203 1.342174 ACCGCGACCAAGAAAGAGTAA 59.658 47.619 8.23 0.00 0.00 2.24
2149 2204 2.224113 ACCGCGACCAAGAAAGAGTAAA 60.224 45.455 8.23 0.00 0.00 2.01
2150 2205 2.803956 CCGCGACCAAGAAAGAGTAAAA 59.196 45.455 8.23 0.00 0.00 1.52
2151 2206 3.249080 CCGCGACCAAGAAAGAGTAAAAA 59.751 43.478 8.23 0.00 0.00 1.94
2209 2264 3.650070 TTGCGTGCAATGAATTAACCA 57.350 38.095 2.58 0.00 0.00 3.67
2210 2265 3.865011 TGCGTGCAATGAATTAACCAT 57.135 38.095 0.00 0.00 0.00 3.55
2211 2266 4.185467 TGCGTGCAATGAATTAACCATT 57.815 36.364 0.00 0.48 34.83 3.16
2219 2274 6.263615 CAATGAATTAACCATTGCATGTCG 57.736 37.500 15.28 0.00 42.68 4.35
2220 2275 5.581126 ATGAATTAACCATTGCATGTCGT 57.419 34.783 0.00 0.00 0.00 4.34
2221 2276 4.731720 TGAATTAACCATTGCATGTCGTG 58.268 39.130 0.00 0.00 0.00 4.35
2222 2277 4.217334 TGAATTAACCATTGCATGTCGTGT 59.783 37.500 0.00 0.00 0.00 4.49
2223 2278 4.782019 ATTAACCATTGCATGTCGTGTT 57.218 36.364 0.00 0.00 0.00 3.32
2224 2279 4.576216 TTAACCATTGCATGTCGTGTTT 57.424 36.364 0.00 0.00 0.00 2.83
2225 2280 2.420628 ACCATTGCATGTCGTGTTTG 57.579 45.000 0.00 0.00 0.00 2.93
2226 2281 1.000385 ACCATTGCATGTCGTGTTTGG 60.000 47.619 0.00 7.91 32.75 3.28
2227 2282 1.000385 CCATTGCATGTCGTGTTTGGT 60.000 47.619 0.00 0.00 0.00 3.67
2228 2283 2.227626 CCATTGCATGTCGTGTTTGGTA 59.772 45.455 0.00 0.00 0.00 3.25
2229 2284 3.491356 CATTGCATGTCGTGTTTGGTAG 58.509 45.455 0.00 0.00 0.00 3.18
2230 2285 2.248280 TGCATGTCGTGTTTGGTAGT 57.752 45.000 0.00 0.00 0.00 2.73
2231 2286 2.139917 TGCATGTCGTGTTTGGTAGTC 58.860 47.619 0.00 0.00 0.00 2.59
2232 2287 2.224185 TGCATGTCGTGTTTGGTAGTCT 60.224 45.455 0.00 0.00 0.00 3.24
2233 2288 2.412089 GCATGTCGTGTTTGGTAGTCTC 59.588 50.000 0.00 0.00 0.00 3.36
2234 2289 2.410785 TGTCGTGTTTGGTAGTCTCG 57.589 50.000 0.00 0.00 0.00 4.04
2235 2290 1.948834 TGTCGTGTTTGGTAGTCTCGA 59.051 47.619 0.00 0.00 0.00 4.04
2236 2291 2.031420 TGTCGTGTTTGGTAGTCTCGAG 60.031 50.000 5.93 5.93 0.00 4.04
2237 2292 2.031333 GTCGTGTTTGGTAGTCTCGAGT 60.031 50.000 13.13 0.00 0.00 4.18
2238 2293 2.225019 TCGTGTTTGGTAGTCTCGAGTC 59.775 50.000 13.13 6.98 0.00 3.36
2239 2294 2.031420 CGTGTTTGGTAGTCTCGAGTCA 60.031 50.000 13.13 2.07 0.00 3.41
2240 2295 3.366070 CGTGTTTGGTAGTCTCGAGTCAT 60.366 47.826 13.13 2.20 0.00 3.06
2241 2296 4.557205 GTGTTTGGTAGTCTCGAGTCATT 58.443 43.478 13.13 0.00 0.00 2.57
2242 2297 5.618418 CGTGTTTGGTAGTCTCGAGTCATTA 60.618 44.000 13.13 0.00 0.00 1.90
2243 2298 6.154445 GTGTTTGGTAGTCTCGAGTCATTAA 58.846 40.000 13.13 0.00 0.00 1.40
2244 2299 6.643770 GTGTTTGGTAGTCTCGAGTCATTAAA 59.356 38.462 13.13 5.96 0.00 1.52
2245 2300 7.170320 GTGTTTGGTAGTCTCGAGTCATTAAAA 59.830 37.037 13.13 5.75 0.00 1.52
2246 2301 7.384115 TGTTTGGTAGTCTCGAGTCATTAAAAG 59.616 37.037 13.13 0.00 0.00 2.27
2247 2302 5.408356 TGGTAGTCTCGAGTCATTAAAAGC 58.592 41.667 13.13 1.67 0.00 3.51
2248 2303 5.047590 TGGTAGTCTCGAGTCATTAAAAGCA 60.048 40.000 13.13 4.10 0.00 3.91
2249 2304 6.043411 GGTAGTCTCGAGTCATTAAAAGCAT 58.957 40.000 13.13 0.00 0.00 3.79
2250 2305 6.019479 GGTAGTCTCGAGTCATTAAAAGCATG 60.019 42.308 13.13 0.00 0.00 4.06
2251 2306 4.331168 AGTCTCGAGTCATTAAAAGCATGC 59.669 41.667 10.51 10.51 0.00 4.06
2252 2307 4.093408 GTCTCGAGTCATTAAAAGCATGCA 59.907 41.667 21.98 0.00 0.00 3.96
2253 2308 4.093408 TCTCGAGTCATTAAAAGCATGCAC 59.907 41.667 21.98 6.43 0.00 4.57
2254 2309 3.750652 TCGAGTCATTAAAAGCATGCACA 59.249 39.130 21.98 0.00 0.00 4.57
2255 2310 3.848019 CGAGTCATTAAAAGCATGCACAC 59.152 43.478 21.98 4.24 0.00 3.82
2256 2311 4.168760 GAGTCATTAAAAGCATGCACACC 58.831 43.478 21.98 0.00 0.00 4.16
2257 2312 3.056607 AGTCATTAAAAGCATGCACACCC 60.057 43.478 21.98 0.00 0.00 4.61
2258 2313 2.896044 TCATTAAAAGCATGCACACCCA 59.104 40.909 21.98 0.00 0.00 4.51
2259 2314 3.323115 TCATTAAAAGCATGCACACCCAA 59.677 39.130 21.98 6.21 0.00 4.12
2260 2315 2.810439 TAAAAGCATGCACACCCAAC 57.190 45.000 21.98 0.00 0.00 3.77
2261 2316 0.829333 AAAAGCATGCACACCCAACA 59.171 45.000 21.98 0.00 0.00 3.33
2262 2317 1.050204 AAAGCATGCACACCCAACAT 58.950 45.000 21.98 0.00 0.00 2.71
2263 2318 1.921982 AAGCATGCACACCCAACATA 58.078 45.000 21.98 0.00 0.00 2.29
2264 2319 2.148446 AGCATGCACACCCAACATAT 57.852 45.000 21.98 0.00 0.00 1.78
2265 2320 2.459644 AGCATGCACACCCAACATATT 58.540 42.857 21.98 0.00 0.00 1.28
2266 2321 2.833338 AGCATGCACACCCAACATATTT 59.167 40.909 21.98 0.00 0.00 1.40
2267 2322 3.261390 AGCATGCACACCCAACATATTTT 59.739 39.130 21.98 0.00 0.00 1.82
2268 2323 4.465660 AGCATGCACACCCAACATATTTTA 59.534 37.500 21.98 0.00 0.00 1.52
2269 2324 5.129155 AGCATGCACACCCAACATATTTTAT 59.871 36.000 21.98 0.00 0.00 1.40
2270 2325 5.816777 GCATGCACACCCAACATATTTTATT 59.183 36.000 14.21 0.00 0.00 1.40
2271 2326 6.238157 GCATGCACACCCAACATATTTTATTG 60.238 38.462 14.21 0.00 0.00 1.90
2272 2327 5.728471 TGCACACCCAACATATTTTATTGG 58.272 37.500 0.00 0.00 42.21 3.16
2273 2328 5.247110 TGCACACCCAACATATTTTATTGGT 59.753 36.000 1.85 0.00 41.18 3.67
2274 2329 6.169800 GCACACCCAACATATTTTATTGGTT 58.830 36.000 1.85 0.00 41.18 3.67
2275 2330 6.091986 GCACACCCAACATATTTTATTGGTTG 59.908 38.462 0.00 0.00 40.63 3.77
2276 2331 7.382110 CACACCCAACATATTTTATTGGTTGA 58.618 34.615 6.76 0.00 37.94 3.18
2277 2332 8.040132 CACACCCAACATATTTTATTGGTTGAT 58.960 33.333 6.76 0.00 37.94 2.57
2278 2333 9.261035 ACACCCAACATATTTTATTGGTTGATA 57.739 29.630 6.76 0.00 37.94 2.15
2294 2349 9.829507 ATTGGTTGATATGTCAAGAAACAAAAA 57.170 25.926 4.98 0.00 44.58 1.94
2318 2373 7.988904 AACGAGATAGAAGTTAATGTACTGC 57.011 36.000 0.00 0.00 0.00 4.40
2319 2374 6.200100 ACGAGATAGAAGTTAATGTACTGCG 58.800 40.000 0.00 0.00 0.00 5.18
2320 2375 5.115773 CGAGATAGAAGTTAATGTACTGCGC 59.884 44.000 0.00 0.00 0.00 6.09
2321 2376 5.290386 AGATAGAAGTTAATGTACTGCGCC 58.710 41.667 4.18 0.00 0.00 6.53
2322 2377 3.611766 AGAAGTTAATGTACTGCGCCT 57.388 42.857 4.18 0.00 0.00 5.52
2323 2378 4.730949 AGAAGTTAATGTACTGCGCCTA 57.269 40.909 4.18 0.00 0.00 3.93
2324 2379 5.080969 AGAAGTTAATGTACTGCGCCTAA 57.919 39.130 4.18 0.00 0.00 2.69
2325 2380 5.109903 AGAAGTTAATGTACTGCGCCTAAG 58.890 41.667 4.18 0.00 0.00 2.18
2326 2381 4.467198 AGTTAATGTACTGCGCCTAAGT 57.533 40.909 4.18 4.18 0.00 2.24
2327 2382 5.587388 AGTTAATGTACTGCGCCTAAGTA 57.413 39.130 4.18 2.98 0.00 2.24
2328 2383 6.158023 AGTTAATGTACTGCGCCTAAGTAT 57.842 37.500 4.18 0.00 32.94 2.12
2329 2384 6.579865 AGTTAATGTACTGCGCCTAAGTATT 58.420 36.000 4.18 2.39 32.94 1.89
2330 2385 7.046033 AGTTAATGTACTGCGCCTAAGTATTT 58.954 34.615 4.18 7.25 32.94 1.40
2331 2386 7.551617 AGTTAATGTACTGCGCCTAAGTATTTT 59.448 33.333 4.18 6.92 32.94 1.82
2332 2387 5.734855 ATGTACTGCGCCTAAGTATTTTG 57.265 39.130 4.18 0.00 32.94 2.44
2333 2388 3.936453 TGTACTGCGCCTAAGTATTTTGG 59.064 43.478 4.18 0.00 32.94 3.28
2334 2389 2.365582 ACTGCGCCTAAGTATTTTGGG 58.634 47.619 4.18 0.00 30.91 4.12
2335 2390 2.026636 ACTGCGCCTAAGTATTTTGGGA 60.027 45.455 4.18 0.00 30.91 4.37
2336 2391 3.214328 CTGCGCCTAAGTATTTTGGGAT 58.786 45.455 4.18 0.00 30.91 3.85
2337 2392 3.626930 TGCGCCTAAGTATTTTGGGATT 58.373 40.909 4.18 0.00 30.91 3.01
2338 2393 4.783055 TGCGCCTAAGTATTTTGGGATTA 58.217 39.130 4.18 0.00 30.91 1.75
2339 2394 5.381757 TGCGCCTAAGTATTTTGGGATTAT 58.618 37.500 4.18 0.00 30.91 1.28
2340 2395 5.830991 TGCGCCTAAGTATTTTGGGATTATT 59.169 36.000 4.18 0.00 30.91 1.40
2341 2396 6.322712 TGCGCCTAAGTATTTTGGGATTATTT 59.677 34.615 4.18 0.00 30.91 1.40
2342 2397 6.640907 GCGCCTAAGTATTTTGGGATTATTTG 59.359 38.462 0.00 0.00 30.91 2.32
2343 2398 7.145323 CGCCTAAGTATTTTGGGATTATTTGG 58.855 38.462 0.99 0.00 30.91 3.28
2344 2399 7.201875 CGCCTAAGTATTTTGGGATTATTTGGT 60.202 37.037 0.99 0.00 30.91 3.67
2345 2400 8.482943 GCCTAAGTATTTTGGGATTATTTGGTT 58.517 33.333 0.99 0.00 30.91 3.67
2349 2404 8.996024 AGTATTTTGGGATTATTTGGTTTTCG 57.004 30.769 0.00 0.00 0.00 3.46
2350 2405 8.590204 AGTATTTTGGGATTATTTGGTTTTCGT 58.410 29.630 0.00 0.00 0.00 3.85
2351 2406 9.857957 GTATTTTGGGATTATTTGGTTTTCGTA 57.142 29.630 0.00 0.00 0.00 3.43
2353 2408 8.819643 TTTTGGGATTATTTGGTTTTCGTAAG 57.180 30.769 0.00 0.00 0.00 2.34
2373 2428 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
2374 2429 4.586884 AGATGACTTACACACCTAGACGA 58.413 43.478 0.00 0.00 0.00 4.20
2375 2430 4.395542 AGATGACTTACACACCTAGACGAC 59.604 45.833 0.00 0.00 0.00 4.34
2376 2431 2.481568 TGACTTACACACCTAGACGACG 59.518 50.000 0.00 0.00 0.00 5.12
2377 2432 1.808945 ACTTACACACCTAGACGACGG 59.191 52.381 0.00 0.00 0.00 4.79
2378 2433 2.079158 CTTACACACCTAGACGACGGA 58.921 52.381 0.00 0.00 0.00 4.69
2379 2434 1.730501 TACACACCTAGACGACGGAG 58.269 55.000 0.00 0.00 0.00 4.63
2666 2722 5.064441 AGTAAATCTGTTGCCATCAAAGC 57.936 39.130 0.00 0.00 33.37 3.51
2787 2844 5.514914 GGCCATTCATTTGTTGTTATGTACG 59.485 40.000 0.00 0.00 0.00 3.67
2986 3052 0.976641 AACCAGTGCAGTAGCTAGCA 59.023 50.000 18.83 3.66 42.74 3.49
2987 3053 0.534412 ACCAGTGCAGTAGCTAGCAG 59.466 55.000 18.83 4.81 42.14 4.24
3005 3078 7.444183 AGCTAGCAGATGTTTAGTGTTGTTTTA 59.556 33.333 18.83 0.00 0.00 1.52
3066 3139 9.686683 AAAATATGACTAATAAGGAGTGCAGTT 57.313 29.630 0.00 0.00 0.00 3.16
3067 3140 9.686683 AAATATGACTAATAAGGAGTGCAGTTT 57.313 29.630 0.00 0.00 0.00 2.66
3068 3141 9.686683 AATATGACTAATAAGGAGTGCAGTTTT 57.313 29.630 0.00 0.00 0.00 2.43
3069 3142 6.801539 TGACTAATAAGGAGTGCAGTTTTG 57.198 37.500 0.00 0.00 0.00 2.44
3070 3143 5.705441 TGACTAATAAGGAGTGCAGTTTTGG 59.295 40.000 0.00 0.00 0.00 3.28
3071 3144 5.631119 ACTAATAAGGAGTGCAGTTTTGGT 58.369 37.500 0.00 0.00 0.00 3.67
3166 3239 7.290014 TGGTGTATCATCATCTTGTACTACCAT 59.710 37.037 0.00 0.00 29.73 3.55
3232 3309 6.238869 GCCATCTCCAAGAATTGTTATCCTTC 60.239 42.308 0.00 0.00 46.99 3.46
3238 3315 5.874810 CCAAGAATTGTTATCCTTCTGTCGA 59.125 40.000 0.00 0.00 46.99 4.20
3268 3350 1.538276 GCAATGCAATGCAGACGTAC 58.462 50.000 21.74 0.00 43.65 3.67
3269 3351 1.131126 GCAATGCAATGCAGACGTACT 59.869 47.619 21.74 0.00 43.65 2.73
3270 3352 2.351418 GCAATGCAATGCAGACGTACTA 59.649 45.455 21.74 0.00 43.65 1.82
3283 3365 5.335504 GCAGACGTACTAGTGGTAACTTTCT 60.336 44.000 5.39 0.00 37.88 2.52
3381 3759 0.040204 AGCCCTGGAATGGAAAGTGG 59.960 55.000 0.00 0.00 0.00 4.00
3390 3768 0.188342 ATGGAAAGTGGGCAGTGGTT 59.812 50.000 0.00 0.00 0.00 3.67
3538 3920 5.018809 TCCTAGACCGTGGTATTGTTTAGT 58.981 41.667 0.00 0.00 0.00 2.24
3559 3941 6.319141 AGTTTATTTCTGTGCTGTTTCTCC 57.681 37.500 0.00 0.00 0.00 3.71
3646 4304 2.322830 GCCCCGTGTTCCGAGAAAC 61.323 63.158 0.00 0.00 39.56 2.78
3648 4306 0.604578 CCCCGTGTTCCGAGAAACTA 59.395 55.000 0.00 0.00 39.56 2.24
3712 4646 3.243359 TGATCTCTTGGTTTGGCCTTT 57.757 42.857 3.32 0.00 38.35 3.11
3713 4647 3.575805 TGATCTCTTGGTTTGGCCTTTT 58.424 40.909 3.32 0.00 38.35 2.27
3714 4648 3.966665 TGATCTCTTGGTTTGGCCTTTTT 59.033 39.130 3.32 0.00 38.35 1.94
3736 4670 6.546972 TTTTTGAAACGAAGGCAAAAGTTT 57.453 29.167 0.00 0.37 41.02 2.66
3737 4671 6.546972 TTTTGAAACGAAGGCAAAAGTTTT 57.453 29.167 0.00 0.00 36.80 2.43
3738 4672 5.523013 TTGAAACGAAGGCAAAAGTTTTG 57.477 34.783 21.60 21.60 37.00 2.44
3739 4673 3.369451 TGAAACGAAGGCAAAAGTTTTGC 59.631 39.130 34.99 34.99 44.22 3.68
3751 4685 7.188468 GCAAAAGTTTTGCCTTATTCATTGA 57.812 32.000 33.57 0.00 39.38 2.57
3752 4686 7.809665 GCAAAAGTTTTGCCTTATTCATTGAT 58.190 30.769 33.57 0.00 39.38 2.57
3753 4687 8.291740 GCAAAAGTTTTGCCTTATTCATTGATT 58.708 29.630 33.57 0.00 39.38 2.57
3763 4697 9.685276 TGCCTTATTCATTGATTAAGAAGAAGA 57.315 29.630 21.58 4.58 40.92 2.87
3770 4704 8.261492 TCATTGATTAAGAAGAAGAGAGTTGC 57.739 34.615 0.00 0.00 0.00 4.17
3771 4705 7.335422 TCATTGATTAAGAAGAAGAGAGTTGCC 59.665 37.037 0.00 0.00 0.00 4.52
3772 4706 6.365970 TGATTAAGAAGAAGAGAGTTGCCT 57.634 37.500 0.00 0.00 0.00 4.75
3773 4707 6.169094 TGATTAAGAAGAAGAGAGTTGCCTG 58.831 40.000 0.00 0.00 0.00 4.85
3774 4708 3.415457 AAGAAGAAGAGAGTTGCCTGG 57.585 47.619 0.00 0.00 0.00 4.45
3775 4709 2.334023 AGAAGAAGAGAGTTGCCTGGT 58.666 47.619 0.00 0.00 0.00 4.00
3776 4710 2.708325 AGAAGAAGAGAGTTGCCTGGTT 59.292 45.455 0.00 0.00 0.00 3.67
3777 4711 3.904339 AGAAGAAGAGAGTTGCCTGGTTA 59.096 43.478 0.00 0.00 0.00 2.85
3778 4712 4.348168 AGAAGAAGAGAGTTGCCTGGTTAA 59.652 41.667 0.00 0.00 0.00 2.01
3779 4713 4.917906 AGAAGAGAGTTGCCTGGTTAAT 57.082 40.909 0.00 0.00 0.00 1.40
3780 4714 5.248380 AGAAGAGAGTTGCCTGGTTAATT 57.752 39.130 0.00 0.00 0.00 1.40
3781 4715 5.635120 AGAAGAGAGTTGCCTGGTTAATTT 58.365 37.500 0.00 0.00 0.00 1.82
3782 4716 6.779860 AGAAGAGAGTTGCCTGGTTAATTTA 58.220 36.000 0.00 0.00 0.00 1.40
3783 4717 6.655425 AGAAGAGAGTTGCCTGGTTAATTTAC 59.345 38.462 0.00 0.00 0.00 2.01
3784 4718 4.935808 AGAGAGTTGCCTGGTTAATTTACG 59.064 41.667 0.00 0.00 0.00 3.18
3785 4719 4.007659 AGAGTTGCCTGGTTAATTTACGG 58.992 43.478 0.00 0.00 0.00 4.02
3786 4720 4.004982 GAGTTGCCTGGTTAATTTACGGA 58.995 43.478 0.00 0.00 0.00 4.69
3787 4721 4.400120 AGTTGCCTGGTTAATTTACGGAA 58.600 39.130 0.00 0.00 0.00 4.30
3788 4722 4.828387 AGTTGCCTGGTTAATTTACGGAAA 59.172 37.500 0.00 0.00 0.00 3.13
3789 4723 5.302313 AGTTGCCTGGTTAATTTACGGAAAA 59.698 36.000 0.00 0.00 0.00 2.29
3790 4724 5.123805 TGCCTGGTTAATTTACGGAAAAC 57.876 39.130 0.00 0.00 0.00 2.43
3791 4725 4.022155 TGCCTGGTTAATTTACGGAAAACC 60.022 41.667 5.62 5.62 40.03 3.27
3792 4726 4.022155 GCCTGGTTAATTTACGGAAAACCA 60.022 41.667 13.31 13.31 45.47 3.67
3794 4728 5.708877 TGGTTAATTTACGGAAAACCAGG 57.291 39.130 10.51 0.00 43.44 4.45
3795 4729 4.022155 TGGTTAATTTACGGAAAACCAGGC 60.022 41.667 10.51 0.00 43.44 4.85
3796 4730 4.160594 GTTAATTTACGGAAAACCAGGCG 58.839 43.478 0.00 0.00 0.00 5.52
3797 4731 2.188062 ATTTACGGAAAACCAGGCGA 57.812 45.000 0.00 0.00 0.00 5.54
3798 4732 1.964552 TTTACGGAAAACCAGGCGAA 58.035 45.000 0.00 0.00 0.00 4.70
3799 4733 1.515081 TTACGGAAAACCAGGCGAAG 58.485 50.000 0.00 0.00 0.00 3.79
3800 4734 0.680618 TACGGAAAACCAGGCGAAGA 59.319 50.000 0.00 0.00 0.00 2.87
3801 4735 0.883370 ACGGAAAACCAGGCGAAGAC 60.883 55.000 0.00 0.00 0.00 3.01
3802 4736 1.574702 CGGAAAACCAGGCGAAGACC 61.575 60.000 0.00 0.00 31.70 3.85
3803 4737 1.574702 GGAAAACCAGGCGAAGACCG 61.575 60.000 0.00 0.00 31.70 4.79
3804 4738 0.883370 GAAAACCAGGCGAAGACCGT 60.883 55.000 0.00 0.00 31.70 4.83
3805 4739 0.883370 AAAACCAGGCGAAGACCGTC 60.883 55.000 0.00 0.00 44.58 4.79
3810 4744 4.170723 GGCGAAGACCGTCTCTTG 57.829 61.111 0.35 0.00 39.53 3.02
3811 4745 1.446272 GGCGAAGACCGTCTCTTGG 60.446 63.158 0.35 0.00 39.53 3.61
3812 4746 1.289380 GCGAAGACCGTCTCTTGGT 59.711 57.895 0.35 0.00 39.53 3.67
3813 4747 0.319641 GCGAAGACCGTCTCTTGGTT 60.320 55.000 0.35 0.00 39.53 3.67
3814 4748 1.872653 GCGAAGACCGTCTCTTGGTTT 60.873 52.381 0.35 0.00 39.53 3.27
3815 4749 1.792949 CGAAGACCGTCTCTTGGTTTG 59.207 52.381 0.35 0.00 39.53 2.93
3816 4750 2.143925 GAAGACCGTCTCTTGGTTTGG 58.856 52.381 0.35 0.00 39.53 3.28
3817 4751 0.250338 AGACCGTCTCTTGGTTTGGC 60.250 55.000 0.00 0.00 40.63 4.52
3818 4752 1.228154 ACCGTCTCTTGGTTTGGCC 60.228 57.895 0.00 0.00 35.82 5.36
3819 4753 1.073199 CCGTCTCTTGGTTTGGCCT 59.927 57.895 3.32 0.00 38.35 5.19
3820 4754 0.537371 CCGTCTCTTGGTTTGGCCTT 60.537 55.000 3.32 0.00 38.35 4.35
3829 4763 0.244721 GGTTTGGCCTTCATGTCAGC 59.755 55.000 3.32 0.00 0.00 4.26
3859 4793 3.342377 TGGCATCAATTTGAGACGGTA 57.658 42.857 5.21 0.00 0.00 4.02
3860 4794 3.680490 TGGCATCAATTTGAGACGGTAA 58.320 40.909 5.21 0.00 0.00 2.85
3861 4795 3.689161 TGGCATCAATTTGAGACGGTAAG 59.311 43.478 5.21 0.00 0.00 2.34
3862 4796 3.938963 GGCATCAATTTGAGACGGTAAGA 59.061 43.478 5.21 0.00 0.00 2.10
3863 4797 4.034510 GGCATCAATTTGAGACGGTAAGAG 59.965 45.833 5.21 0.00 0.00 2.85
3864 4798 4.494855 GCATCAATTTGAGACGGTAAGAGC 60.495 45.833 5.21 0.00 0.00 4.09
3865 4799 4.265904 TCAATTTGAGACGGTAAGAGCA 57.734 40.909 0.00 0.00 0.00 4.26
3866 4800 4.637276 TCAATTTGAGACGGTAAGAGCAA 58.363 39.130 0.00 0.00 0.00 3.91
3867 4801 4.451096 TCAATTTGAGACGGTAAGAGCAAC 59.549 41.667 0.00 0.00 0.00 4.17
3868 4802 2.060326 TTGAGACGGTAAGAGCAACG 57.940 50.000 0.00 0.00 0.00 4.10
3869 4803 0.956633 TGAGACGGTAAGAGCAACGT 59.043 50.000 0.00 0.00 42.88 3.99
3870 4804 1.338973 TGAGACGGTAAGAGCAACGTT 59.661 47.619 0.00 0.00 39.95 3.99
3871 4805 1.719780 GAGACGGTAAGAGCAACGTTG 59.280 52.381 23.90 23.90 39.95 4.10
3872 4806 1.338973 AGACGGTAAGAGCAACGTTGA 59.661 47.619 31.62 7.55 39.95 3.18
3873 4807 1.454653 GACGGTAAGAGCAACGTTGAC 59.545 52.381 31.62 22.13 39.95 3.18
3874 4808 0.788391 CGGTAAGAGCAACGTTGACC 59.212 55.000 31.62 25.29 0.00 4.02
3875 4809 1.154197 GGTAAGAGCAACGTTGACCC 58.846 55.000 31.62 17.80 0.00 4.46
3876 4810 1.541670 GGTAAGAGCAACGTTGACCCA 60.542 52.381 31.62 9.02 0.00 4.51
3877 4811 2.215196 GTAAGAGCAACGTTGACCCAA 58.785 47.619 31.62 10.45 0.00 4.12
3878 4812 1.757682 AAGAGCAACGTTGACCCAAA 58.242 45.000 31.62 0.00 0.00 3.28
3879 4813 1.021968 AGAGCAACGTTGACCCAAAC 58.978 50.000 31.62 11.81 0.00 2.93
3886 4820 1.652563 GTTGACCCAAACGGACAGC 59.347 57.895 0.00 0.00 37.60 4.40
3887 4821 1.890041 TTGACCCAAACGGACAGCG 60.890 57.895 0.00 0.00 37.60 5.18
3888 4822 2.029964 GACCCAAACGGACAGCGA 59.970 61.111 0.00 0.00 34.64 4.93
3889 4823 1.375523 GACCCAAACGGACAGCGAT 60.376 57.895 0.00 0.00 34.64 4.58
3890 4824 0.953960 GACCCAAACGGACAGCGATT 60.954 55.000 0.00 0.00 34.64 3.34
3891 4825 0.536460 ACCCAAACGGACAGCGATTT 60.536 50.000 0.00 0.00 34.64 2.17
3892 4826 0.596082 CCCAAACGGACAGCGATTTT 59.404 50.000 0.00 0.00 0.00 1.82
3893 4827 1.665735 CCCAAACGGACAGCGATTTTG 60.666 52.381 0.00 0.00 0.00 2.44
3894 4828 1.001815 CCAAACGGACAGCGATTTTGT 60.002 47.619 0.00 0.00 0.00 2.83
3895 4829 2.307049 CAAACGGACAGCGATTTTGTC 58.693 47.619 0.00 0.00 43.25 3.18
3900 4834 2.681152 GACAGCGATTTTGTCCGTTT 57.319 45.000 0.00 0.00 39.17 3.60
3901 4835 3.799137 GACAGCGATTTTGTCCGTTTA 57.201 42.857 0.00 0.00 39.17 2.01
3902 4836 3.732943 GACAGCGATTTTGTCCGTTTAG 58.267 45.455 0.00 0.00 39.17 1.85
3903 4837 2.482721 ACAGCGATTTTGTCCGTTTAGG 59.517 45.455 0.00 0.00 42.97 2.69
3904 4838 1.467342 AGCGATTTTGTCCGTTTAGGC 59.533 47.619 0.00 0.00 40.77 3.93
3905 4839 1.467342 GCGATTTTGTCCGTTTAGGCT 59.533 47.619 0.00 0.00 40.77 4.58
3906 4840 2.727916 GCGATTTTGTCCGTTTAGGCTG 60.728 50.000 0.00 0.00 40.77 4.85
3907 4841 2.159572 CGATTTTGTCCGTTTAGGCTGG 60.160 50.000 0.00 0.00 40.77 4.85
3908 4842 0.955905 TTTTGTCCGTTTAGGCTGGC 59.044 50.000 0.00 0.00 40.77 4.85
3909 4843 0.891904 TTTGTCCGTTTAGGCTGGCC 60.892 55.000 3.00 3.00 40.77 5.36
3910 4844 2.058125 TTGTCCGTTTAGGCTGGCCA 62.058 55.000 14.39 4.71 40.77 5.36
3911 4845 2.038837 GTCCGTTTAGGCTGGCCAC 61.039 63.158 14.39 0.00 40.77 5.01
3912 4846 2.750237 CCGTTTAGGCTGGCCACC 60.750 66.667 14.39 9.02 38.92 4.61
3913 4847 2.750237 CGTTTAGGCTGGCCACCC 60.750 66.667 9.29 9.29 38.92 4.61
3914 4848 2.750237 GTTTAGGCTGGCCACCCG 60.750 66.667 11.59 0.00 38.92 5.28
3915 4849 4.733542 TTTAGGCTGGCCACCCGC 62.734 66.667 11.59 9.22 38.92 6.13
3921 4855 2.589540 CTGGCCACCCGCTTGATA 59.410 61.111 0.00 0.00 37.74 2.15
3922 4856 1.149174 CTGGCCACCCGCTTGATAT 59.851 57.895 0.00 0.00 37.74 1.63
3923 4857 0.886490 CTGGCCACCCGCTTGATATC 60.886 60.000 0.00 0.00 37.74 1.63
3924 4858 1.344953 TGGCCACCCGCTTGATATCT 61.345 55.000 0.00 0.00 37.74 1.98
3925 4859 0.886490 GGCCACCCGCTTGATATCTG 60.886 60.000 0.00 0.00 37.74 2.90
3926 4860 0.179045 GCCACCCGCTTGATATCTGT 60.179 55.000 3.98 0.00 0.00 3.41
3927 4861 1.747206 GCCACCCGCTTGATATCTGTT 60.747 52.381 3.98 0.00 0.00 3.16
3928 4862 2.643551 CCACCCGCTTGATATCTGTTT 58.356 47.619 3.98 0.00 0.00 2.83
3929 4863 3.016736 CCACCCGCTTGATATCTGTTTT 58.983 45.455 3.98 0.00 0.00 2.43
3930 4864 3.443681 CCACCCGCTTGATATCTGTTTTT 59.556 43.478 3.98 0.00 0.00 1.94
3947 4881 2.715737 TTTTTAGTCGGCAATGCACC 57.284 45.000 7.79 0.00 0.00 5.01
3948 4882 0.885196 TTTTAGTCGGCAATGCACCC 59.115 50.000 7.79 0.00 0.00 4.61
3949 4883 0.250945 TTTAGTCGGCAATGCACCCA 60.251 50.000 7.79 0.00 0.00 4.51
3950 4884 0.250945 TTAGTCGGCAATGCACCCAA 60.251 50.000 7.79 0.00 0.00 4.12
3951 4885 0.958382 TAGTCGGCAATGCACCCAAC 60.958 55.000 7.79 0.00 0.00 3.77
3952 4886 2.203408 TCGGCAATGCACCCAACA 60.203 55.556 7.79 0.00 0.00 3.33
3953 4887 2.049248 CGGCAATGCACCCAACAC 60.049 61.111 7.79 0.00 0.00 3.32
3954 4888 2.049248 GGCAATGCACCCAACACG 60.049 61.111 7.79 0.00 0.00 4.49
3955 4889 2.560119 GGCAATGCACCCAACACGA 61.560 57.895 7.79 0.00 0.00 4.35
3956 4890 1.081242 GCAATGCACCCAACACGAG 60.081 57.895 0.00 0.00 0.00 4.18
3957 4891 1.081242 CAATGCACCCAACACGAGC 60.081 57.895 0.00 0.00 0.00 5.03
3958 4892 1.528076 AATGCACCCAACACGAGCA 60.528 52.632 0.00 0.00 39.79 4.26
3959 4893 0.895100 AATGCACCCAACACGAGCAT 60.895 50.000 0.00 0.00 46.86 3.79
3960 4894 1.588824 ATGCACCCAACACGAGCATG 61.589 55.000 0.00 0.00 43.60 4.06
3961 4895 2.260869 GCACCCAACACGAGCATGT 61.261 57.895 0.00 0.00 0.00 3.21
3962 4896 1.795170 GCACCCAACACGAGCATGTT 61.795 55.000 0.00 0.00 43.67 2.71
3963 4897 1.518325 CACCCAACACGAGCATGTTA 58.482 50.000 0.00 0.00 40.89 2.41
3964 4898 1.876799 CACCCAACACGAGCATGTTAA 59.123 47.619 0.00 0.00 40.89 2.01
3965 4899 1.877443 ACCCAACACGAGCATGTTAAC 59.123 47.619 0.00 0.00 40.89 2.01
3966 4900 1.136085 CCCAACACGAGCATGTTAACG 60.136 52.381 0.26 0.00 40.89 3.18
3967 4901 1.795872 CCAACACGAGCATGTTAACGA 59.204 47.619 0.26 0.00 40.89 3.85
3968 4902 2.159841 CCAACACGAGCATGTTAACGAG 60.160 50.000 0.26 0.00 40.89 4.18
3969 4903 1.710013 ACACGAGCATGTTAACGAGG 58.290 50.000 0.26 0.00 0.00 4.63
3970 4904 1.000506 ACACGAGCATGTTAACGAGGT 59.999 47.619 0.26 1.23 0.00 3.85
3971 4905 2.066262 CACGAGCATGTTAACGAGGTT 58.934 47.619 0.26 0.00 0.00 3.50
3972 4906 3.247442 CACGAGCATGTTAACGAGGTTA 58.753 45.455 0.26 0.00 0.00 2.85
3973 4907 3.060363 CACGAGCATGTTAACGAGGTTAC 59.940 47.826 0.26 0.00 0.00 2.50
3974 4908 3.057033 ACGAGCATGTTAACGAGGTTACT 60.057 43.478 0.26 0.00 0.00 2.24
3975 4909 3.303495 CGAGCATGTTAACGAGGTTACTG 59.697 47.826 0.26 0.00 0.00 2.74
3976 4910 4.243270 GAGCATGTTAACGAGGTTACTGT 58.757 43.478 0.26 0.00 0.00 3.55
3977 4911 4.243270 AGCATGTTAACGAGGTTACTGTC 58.757 43.478 0.26 0.00 0.00 3.51
3978 4912 3.370061 GCATGTTAACGAGGTTACTGTCC 59.630 47.826 0.26 0.00 0.00 4.02
3979 4913 3.665745 TGTTAACGAGGTTACTGTCCC 57.334 47.619 0.26 0.00 0.00 4.46
3980 4914 2.964464 TGTTAACGAGGTTACTGTCCCA 59.036 45.455 0.26 0.00 0.00 4.37
3981 4915 3.006110 TGTTAACGAGGTTACTGTCCCAG 59.994 47.826 0.26 0.00 37.52 4.45
3982 4916 2.005370 AACGAGGTTACTGTCCCAGA 57.995 50.000 0.00 0.00 35.18 3.86
3983 4917 2.005370 ACGAGGTTACTGTCCCAGAA 57.995 50.000 0.00 0.00 35.18 3.02
3984 4918 2.537143 ACGAGGTTACTGTCCCAGAAT 58.463 47.619 0.00 0.00 35.18 2.40
3985 4919 2.904434 ACGAGGTTACTGTCCCAGAATT 59.096 45.455 0.00 0.00 35.18 2.17
3986 4920 4.091549 ACGAGGTTACTGTCCCAGAATTA 58.908 43.478 0.00 0.00 35.18 1.40
3987 4921 4.159879 ACGAGGTTACTGTCCCAGAATTAG 59.840 45.833 0.00 0.00 35.18 1.73
3988 4922 4.443621 GAGGTTACTGTCCCAGAATTAGC 58.556 47.826 0.00 0.00 35.18 3.09
3989 4923 4.104831 AGGTTACTGTCCCAGAATTAGCT 58.895 43.478 0.00 0.00 35.18 3.32
3990 4924 4.080863 AGGTTACTGTCCCAGAATTAGCTG 60.081 45.833 0.00 0.00 35.18 4.24
3991 4925 4.081087 GGTTACTGTCCCAGAATTAGCTGA 60.081 45.833 0.00 0.00 38.14 4.26
3992 4926 5.488341 GTTACTGTCCCAGAATTAGCTGAA 58.512 41.667 0.00 0.00 38.14 3.02
3993 4927 4.213564 ACTGTCCCAGAATTAGCTGAAG 57.786 45.455 0.00 0.00 38.14 3.02
3994 4928 2.941720 CTGTCCCAGAATTAGCTGAAGC 59.058 50.000 0.00 0.00 38.14 3.86
3995 4929 2.305635 TGTCCCAGAATTAGCTGAAGCA 59.694 45.455 4.90 0.00 45.16 3.91
3996 4930 2.680339 GTCCCAGAATTAGCTGAAGCAC 59.320 50.000 4.90 0.00 45.16 4.40
3997 4931 2.573462 TCCCAGAATTAGCTGAAGCACT 59.427 45.455 4.90 0.00 45.16 4.40
3998 4932 3.774766 TCCCAGAATTAGCTGAAGCACTA 59.225 43.478 4.90 0.00 45.16 2.74
3999 4933 4.225042 TCCCAGAATTAGCTGAAGCACTAA 59.775 41.667 4.90 0.00 45.16 2.24
4000 4934 5.104360 TCCCAGAATTAGCTGAAGCACTAAT 60.104 40.000 4.90 0.00 45.16 1.73
4001 4935 5.008415 CCCAGAATTAGCTGAAGCACTAATG 59.992 44.000 4.90 0.00 45.16 1.90
4002 4936 5.505324 CCAGAATTAGCTGAAGCACTAATGC 60.505 44.000 4.90 0.00 44.40 3.56
4013 4947 0.301687 CACTAATGCTAAGGCGTGCG 59.698 55.000 0.00 0.00 42.25 5.34
4014 4948 0.810031 ACTAATGCTAAGGCGTGCGG 60.810 55.000 0.00 0.00 42.25 5.69
4015 4949 0.810031 CTAATGCTAAGGCGTGCGGT 60.810 55.000 0.00 0.00 42.25 5.68
4016 4950 1.087202 TAATGCTAAGGCGTGCGGTG 61.087 55.000 0.00 0.00 42.25 4.94
4017 4951 2.796483 AATGCTAAGGCGTGCGGTGA 62.796 55.000 0.00 0.00 42.25 4.02
4018 4952 3.488090 GCTAAGGCGTGCGGTGAC 61.488 66.667 0.00 0.00 0.00 3.67
4019 4953 2.261671 CTAAGGCGTGCGGTGACT 59.738 61.111 0.00 0.00 0.00 3.41
4020 4954 1.805945 CTAAGGCGTGCGGTGACTC 60.806 63.158 0.00 0.00 0.00 3.36
4021 4955 2.214181 CTAAGGCGTGCGGTGACTCT 62.214 60.000 0.00 0.00 0.00 3.24
4022 4956 2.209064 TAAGGCGTGCGGTGACTCTC 62.209 60.000 0.00 0.00 0.00 3.20
4023 4957 4.357947 GGCGTGCGGTGACTCTCA 62.358 66.667 0.00 0.00 0.00 3.27
4024 4958 3.106407 GCGTGCGGTGACTCTCAC 61.106 66.667 0.00 0.00 46.23 3.51
4048 4982 4.716943 CGTGAGGAAGAATTTTCAAGAGC 58.283 43.478 0.00 0.00 0.00 4.09
4049 4983 4.378874 CGTGAGGAAGAATTTTCAAGAGCC 60.379 45.833 0.00 0.00 0.00 4.70
4050 4984 3.753272 TGAGGAAGAATTTTCAAGAGCCG 59.247 43.478 0.00 0.00 0.00 5.52
4051 4985 3.753797 GAGGAAGAATTTTCAAGAGCCGT 59.246 43.478 0.00 0.00 0.00 5.68
4052 4986 4.145052 AGGAAGAATTTTCAAGAGCCGTT 58.855 39.130 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
379 381 2.023414 CTCGCCGCCCACCATAACTA 62.023 60.000 0.00 0.00 0.00 2.24
637 640 1.006281 TCCCCTACTTTCAGCCTACGA 59.994 52.381 0.00 0.00 0.00 3.43
664 667 1.595357 CCGCCTCCTTCCTTACGTT 59.405 57.895 0.00 0.00 0.00 3.99
775 781 7.663081 ACTCATTGGCGATATGATTGTATCTTT 59.337 33.333 0.00 0.00 32.00 2.52
786 792 4.257267 TGGAGTACTCATTGGCGATATG 57.743 45.455 23.91 0.00 0.00 1.78
918 924 2.353704 CCGCCCCATTTCTTTCCTTTTC 60.354 50.000 0.00 0.00 0.00 2.29
1021 1027 4.806339 AGCGGGGAGGGAAGGGAG 62.806 72.222 0.00 0.00 0.00 4.30
1384 1397 1.922570 CCACCTCGATCAGTTAACCG 58.077 55.000 0.88 0.00 0.00 4.44
1412 1425 1.388547 GAGACCTGCAAACAACCACA 58.611 50.000 0.00 0.00 0.00 4.17
1468 1481 2.192175 CCGCCACCATTACTCCCC 59.808 66.667 0.00 0.00 0.00 4.81
1615 1641 4.153986 GTGCAGAAATCGAACTCACAATG 58.846 43.478 0.00 0.00 0.00 2.82
1616 1642 3.189287 GGTGCAGAAATCGAACTCACAAT 59.811 43.478 0.00 0.00 0.00 2.71
1815 1841 0.969409 GGTACTGGTACACCGGAGCT 60.969 60.000 9.46 0.00 45.36 4.09
1818 1844 1.252904 GCTGGTACTGGTACACCGGA 61.253 60.000 9.46 0.00 45.36 5.14
1820 1846 0.389426 GTGCTGGTACTGGTACACCG 60.389 60.000 12.14 2.32 37.66 4.94
1823 1849 1.346395 CCTTGTGCTGGTACTGGTACA 59.654 52.381 12.14 0.00 37.78 2.90
1848 1874 1.256812 CTTTGGCCGGAGATTTGGTT 58.743 50.000 5.05 0.00 0.00 3.67
1855 1881 1.988015 CCTTACCTTTGGCCGGAGA 59.012 57.895 5.05 0.00 0.00 3.71
1891 1917 1.797211 GAGGATCCTCTGCCGTACGG 61.797 65.000 31.11 30.06 39.80 4.02
1892 1918 1.655329 GAGGATCCTCTGCCGTACG 59.345 63.158 31.11 8.69 39.80 3.67
1893 1919 1.102222 ACGAGGATCCTCTGCCGTAC 61.102 60.000 33.70 11.01 40.69 3.67
1894 1920 0.818445 GACGAGGATCCTCTGCCGTA 60.818 60.000 33.70 0.00 40.69 4.02
1895 1921 2.043852 ACGAGGATCCTCTGCCGT 60.044 61.111 33.70 25.82 40.69 5.68
1896 1922 2.725008 GACGAGGATCCTCTGCCG 59.275 66.667 33.70 25.21 40.69 5.69
1897 1923 1.456705 AGGACGAGGATCCTCTGCC 60.457 63.158 33.70 31.13 46.92 4.85
1898 1924 4.268720 AGGACGAGGATCCTCTGC 57.731 61.111 33.70 25.45 46.92 4.26
1903 1929 1.410882 CAAGGAAGAGGACGAGGATCC 59.589 57.143 2.48 2.48 39.28 3.36
1904 1930 2.104170 ACAAGGAAGAGGACGAGGATC 58.896 52.381 0.00 0.00 0.00 3.36
1905 1931 2.239681 ACAAGGAAGAGGACGAGGAT 57.760 50.000 0.00 0.00 0.00 3.24
1906 1932 2.011122 AACAAGGAAGAGGACGAGGA 57.989 50.000 0.00 0.00 0.00 3.71
1907 1933 2.841442 AAACAAGGAAGAGGACGAGG 57.159 50.000 0.00 0.00 0.00 4.63
1908 1934 3.996480 AGAAAACAAGGAAGAGGACGAG 58.004 45.455 0.00 0.00 0.00 4.18
1909 1935 4.127171 CAAGAAAACAAGGAAGAGGACGA 58.873 43.478 0.00 0.00 0.00 4.20
1910 1936 3.877508 ACAAGAAAACAAGGAAGAGGACG 59.122 43.478 0.00 0.00 0.00 4.79
1911 1937 4.640647 ACACAAGAAAACAAGGAAGAGGAC 59.359 41.667 0.00 0.00 0.00 3.85
1912 1938 4.855340 ACACAAGAAAACAAGGAAGAGGA 58.145 39.130 0.00 0.00 0.00 3.71
1913 1939 5.358160 AGAACACAAGAAAACAAGGAAGAGG 59.642 40.000 0.00 0.00 0.00 3.69
1914 1940 6.127897 ACAGAACACAAGAAAACAAGGAAGAG 60.128 38.462 0.00 0.00 0.00 2.85
1915 1941 5.710099 ACAGAACACAAGAAAACAAGGAAGA 59.290 36.000 0.00 0.00 0.00 2.87
1916 1942 5.954335 ACAGAACACAAGAAAACAAGGAAG 58.046 37.500 0.00 0.00 0.00 3.46
1917 1943 5.975693 ACAGAACACAAGAAAACAAGGAA 57.024 34.783 0.00 0.00 0.00 3.36
1918 1944 5.710099 AGAACAGAACACAAGAAAACAAGGA 59.290 36.000 0.00 0.00 0.00 3.36
1919 1945 5.801947 CAGAACAGAACACAAGAAAACAAGG 59.198 40.000 0.00 0.00 0.00 3.61
1920 1946 5.287035 GCAGAACAGAACACAAGAAAACAAG 59.713 40.000 0.00 0.00 0.00 3.16
1932 1958 1.864711 GCAGTAACGCAGAACAGAACA 59.135 47.619 0.00 0.00 0.00 3.18
1934 1960 2.135139 CAGCAGTAACGCAGAACAGAA 58.865 47.619 0.00 0.00 0.00 3.02
1937 1963 0.249868 AGCAGCAGTAACGCAGAACA 60.250 50.000 0.00 0.00 0.00 3.18
1957 1983 1.227342 CCATGCAAAACCCAAACCGC 61.227 55.000 0.00 0.00 0.00 5.68
2101 2156 9.974750 GCACAATCTAAAATGACTTAAGAGTAC 57.025 33.333 10.09 0.00 35.88 2.73
2102 2157 9.719355 TGCACAATCTAAAATGACTTAAGAGTA 57.281 29.630 10.09 0.00 35.88 2.59
2103 2158 8.507249 GTGCACAATCTAAAATGACTTAAGAGT 58.493 33.333 13.17 0.00 39.32 3.24
2104 2159 7.965107 GGTGCACAATCTAAAATGACTTAAGAG 59.035 37.037 20.43 0.00 0.00 2.85
2105 2160 7.360861 CGGTGCACAATCTAAAATGACTTAAGA 60.361 37.037 20.43 0.00 0.00 2.10
2106 2161 6.742718 CGGTGCACAATCTAAAATGACTTAAG 59.257 38.462 20.43 0.00 0.00 1.85
2107 2162 6.607689 CGGTGCACAATCTAAAATGACTTAA 58.392 36.000 20.43 0.00 0.00 1.85
2108 2163 5.391523 GCGGTGCACAATCTAAAATGACTTA 60.392 40.000 20.43 0.00 0.00 2.24
2109 2164 4.615912 GCGGTGCACAATCTAAAATGACTT 60.616 41.667 20.43 0.00 0.00 3.01
2110 2165 3.119849 GCGGTGCACAATCTAAAATGACT 60.120 43.478 20.43 0.00 0.00 3.41
2111 2166 3.171277 GCGGTGCACAATCTAAAATGAC 58.829 45.455 20.43 0.00 0.00 3.06
2112 2167 2.159585 CGCGGTGCACAATCTAAAATGA 60.160 45.455 20.43 0.00 0.00 2.57
2113 2168 2.159585 TCGCGGTGCACAATCTAAAATG 60.160 45.455 20.43 0.00 0.00 2.32
2114 2169 2.080693 TCGCGGTGCACAATCTAAAAT 58.919 42.857 20.43 0.00 0.00 1.82
2115 2170 1.195900 GTCGCGGTGCACAATCTAAAA 59.804 47.619 20.43 0.00 0.00 1.52
2116 2171 0.793861 GTCGCGGTGCACAATCTAAA 59.206 50.000 20.43 0.00 0.00 1.85
2117 2172 1.017177 GGTCGCGGTGCACAATCTAA 61.017 55.000 20.43 0.00 0.00 2.10
2118 2173 1.447140 GGTCGCGGTGCACAATCTA 60.447 57.895 20.43 0.00 0.00 1.98
2119 2174 2.742372 GGTCGCGGTGCACAATCT 60.742 61.111 20.43 0.00 0.00 2.40
2120 2175 2.513065 CTTGGTCGCGGTGCACAATC 62.513 60.000 20.43 5.67 0.00 2.67
2121 2176 2.593148 TTGGTCGCGGTGCACAAT 60.593 55.556 20.43 0.00 0.00 2.71
2122 2177 3.276091 CTTGGTCGCGGTGCACAA 61.276 61.111 20.43 1.00 0.00 3.33
2123 2178 3.741830 TTCTTGGTCGCGGTGCACA 62.742 57.895 20.43 0.00 0.00 4.57
2124 2179 2.443957 CTTTCTTGGTCGCGGTGCAC 62.444 60.000 8.80 8.80 0.00 4.57
2125 2180 2.203084 TTTCTTGGTCGCGGTGCA 60.203 55.556 6.13 0.00 0.00 4.57
2126 2181 1.901650 CTCTTTCTTGGTCGCGGTGC 61.902 60.000 6.13 0.00 0.00 5.01
2127 2182 0.600255 ACTCTTTCTTGGTCGCGGTG 60.600 55.000 6.13 0.00 0.00 4.94
2128 2183 0.963962 TACTCTTTCTTGGTCGCGGT 59.036 50.000 6.13 0.00 0.00 5.68
2129 2184 2.074547 TTACTCTTTCTTGGTCGCGG 57.925 50.000 6.13 0.00 0.00 6.46
2130 2185 4.461992 TTTTTACTCTTTCTTGGTCGCG 57.538 40.909 0.00 0.00 0.00 5.87
2188 2243 4.185467 TGGTTAATTCATTGCACGCAAT 57.815 36.364 11.41 11.41 46.35 3.56
2189 2244 3.650070 TGGTTAATTCATTGCACGCAA 57.350 38.095 6.95 6.95 40.47 4.85
2190 2245 3.865011 ATGGTTAATTCATTGCACGCA 57.135 38.095 0.00 0.00 0.00 5.24
2191 2246 4.503767 CAATGGTTAATTCATTGCACGC 57.496 40.909 16.26 0.00 42.98 5.34
2209 2264 3.146066 ACTACCAAACACGACATGCAAT 58.854 40.909 0.00 0.00 0.00 3.56
2210 2265 2.546368 GACTACCAAACACGACATGCAA 59.454 45.455 0.00 0.00 0.00 4.08
2211 2266 2.139917 GACTACCAAACACGACATGCA 58.860 47.619 0.00 0.00 0.00 3.96
2212 2267 2.412089 GAGACTACCAAACACGACATGC 59.588 50.000 0.00 0.00 0.00 4.06
2213 2268 2.661675 CGAGACTACCAAACACGACATG 59.338 50.000 0.00 0.00 0.00 3.21
2214 2269 2.555325 TCGAGACTACCAAACACGACAT 59.445 45.455 0.00 0.00 0.00 3.06
2215 2270 1.948834 TCGAGACTACCAAACACGACA 59.051 47.619 0.00 0.00 0.00 4.35
2216 2271 2.031333 ACTCGAGACTACCAAACACGAC 60.031 50.000 21.68 0.00 0.00 4.34
2217 2272 2.224606 ACTCGAGACTACCAAACACGA 58.775 47.619 21.68 0.00 0.00 4.35
2218 2273 2.031420 TGACTCGAGACTACCAAACACG 60.031 50.000 21.68 0.00 0.00 4.49
2219 2274 3.637998 TGACTCGAGACTACCAAACAC 57.362 47.619 21.68 0.00 0.00 3.32
2220 2275 4.866508 AATGACTCGAGACTACCAAACA 57.133 40.909 21.68 5.19 0.00 2.83
2221 2276 7.621633 GCTTTTAATGACTCGAGACTACCAAAC 60.622 40.741 21.68 0.00 0.00 2.93
2222 2277 6.367969 GCTTTTAATGACTCGAGACTACCAAA 59.632 38.462 21.68 9.90 0.00 3.28
2223 2278 5.867716 GCTTTTAATGACTCGAGACTACCAA 59.132 40.000 21.68 2.09 0.00 3.67
2224 2279 5.047590 TGCTTTTAATGACTCGAGACTACCA 60.048 40.000 21.68 8.84 0.00 3.25
2225 2280 5.408356 TGCTTTTAATGACTCGAGACTACC 58.592 41.667 21.68 3.19 0.00 3.18
2226 2281 6.508721 GCATGCTTTTAATGACTCGAGACTAC 60.509 42.308 21.68 7.97 0.00 2.73
2227 2282 5.520288 GCATGCTTTTAATGACTCGAGACTA 59.480 40.000 21.68 4.90 0.00 2.59
2228 2283 4.331168 GCATGCTTTTAATGACTCGAGACT 59.669 41.667 21.68 0.00 0.00 3.24
2229 2284 4.093408 TGCATGCTTTTAATGACTCGAGAC 59.907 41.667 21.68 14.43 0.00 3.36
2230 2285 4.093408 GTGCATGCTTTTAATGACTCGAGA 59.907 41.667 21.68 0.00 0.00 4.04
2231 2286 4.142838 TGTGCATGCTTTTAATGACTCGAG 60.143 41.667 20.33 11.84 0.00 4.04
2232 2287 3.750652 TGTGCATGCTTTTAATGACTCGA 59.249 39.130 20.33 0.00 0.00 4.04
2233 2288 3.848019 GTGTGCATGCTTTTAATGACTCG 59.152 43.478 20.33 0.00 0.00 4.18
2234 2289 4.168760 GGTGTGCATGCTTTTAATGACTC 58.831 43.478 20.33 6.64 0.00 3.36
2235 2290 3.056607 GGGTGTGCATGCTTTTAATGACT 60.057 43.478 20.33 0.00 0.00 3.41
2236 2291 3.253230 GGGTGTGCATGCTTTTAATGAC 58.747 45.455 20.33 6.41 0.00 3.06
2237 2292 2.896044 TGGGTGTGCATGCTTTTAATGA 59.104 40.909 20.33 0.00 0.00 2.57
2238 2293 3.316071 TGGGTGTGCATGCTTTTAATG 57.684 42.857 20.33 0.00 0.00 1.90
2239 2294 3.070734 TGTTGGGTGTGCATGCTTTTAAT 59.929 39.130 20.33 0.00 0.00 1.40
2240 2295 2.432146 TGTTGGGTGTGCATGCTTTTAA 59.568 40.909 20.33 4.07 0.00 1.52
2241 2296 2.034878 TGTTGGGTGTGCATGCTTTTA 58.965 42.857 20.33 0.00 0.00 1.52
2242 2297 0.829333 TGTTGGGTGTGCATGCTTTT 59.171 45.000 20.33 0.00 0.00 2.27
2243 2298 1.050204 ATGTTGGGTGTGCATGCTTT 58.950 45.000 20.33 0.00 0.00 3.51
2244 2299 1.921982 TATGTTGGGTGTGCATGCTT 58.078 45.000 20.33 0.00 0.00 3.91
2245 2300 2.148446 ATATGTTGGGTGTGCATGCT 57.852 45.000 20.33 0.00 0.00 3.79
2246 2301 2.965572 AATATGTTGGGTGTGCATGC 57.034 45.000 11.82 11.82 0.00 4.06
2247 2302 6.258287 CCAATAAAATATGTTGGGTGTGCATG 59.742 38.462 0.00 0.00 44.30 4.06
2248 2303 6.347696 CCAATAAAATATGTTGGGTGTGCAT 58.652 36.000 0.00 0.00 44.30 3.96
2249 2304 5.728471 CCAATAAAATATGTTGGGTGTGCA 58.272 37.500 0.00 0.00 44.30 4.57
2268 2323 9.829507 TTTTTGTTTCTTGACATATCAACCAAT 57.170 25.926 0.00 0.00 40.01 3.16
2292 2347 8.870879 GCAGTACATTAACTTCTATCTCGTTTT 58.129 33.333 0.00 0.00 0.00 2.43
2293 2348 7.220300 CGCAGTACATTAACTTCTATCTCGTTT 59.780 37.037 0.00 0.00 0.00 3.60
2294 2349 6.691818 CGCAGTACATTAACTTCTATCTCGTT 59.308 38.462 0.00 0.00 0.00 3.85
2295 2350 6.200100 CGCAGTACATTAACTTCTATCTCGT 58.800 40.000 0.00 0.00 0.00 4.18
2296 2351 5.115773 GCGCAGTACATTAACTTCTATCTCG 59.884 44.000 0.30 0.00 0.00 4.04
2297 2352 5.402867 GGCGCAGTACATTAACTTCTATCTC 59.597 44.000 10.83 0.00 0.00 2.75
2298 2353 5.069251 AGGCGCAGTACATTAACTTCTATCT 59.931 40.000 10.83 0.00 0.00 1.98
2299 2354 5.290386 AGGCGCAGTACATTAACTTCTATC 58.710 41.667 10.83 0.00 0.00 2.08
2300 2355 5.277857 AGGCGCAGTACATTAACTTCTAT 57.722 39.130 10.83 0.00 0.00 1.98
2301 2356 4.730949 AGGCGCAGTACATTAACTTCTA 57.269 40.909 10.83 0.00 0.00 2.10
2302 2357 3.611766 AGGCGCAGTACATTAACTTCT 57.388 42.857 10.83 0.00 0.00 2.85
2303 2358 4.868734 ACTTAGGCGCAGTACATTAACTTC 59.131 41.667 10.83 0.00 0.00 3.01
2304 2359 4.828829 ACTTAGGCGCAGTACATTAACTT 58.171 39.130 10.83 0.00 0.00 2.66
2305 2360 4.467198 ACTTAGGCGCAGTACATTAACT 57.533 40.909 10.83 0.00 0.00 2.24
2306 2361 6.839820 AATACTTAGGCGCAGTACATTAAC 57.160 37.500 10.83 0.00 29.39 2.01
2307 2362 7.201661 CCAAAATACTTAGGCGCAGTACATTAA 60.202 37.037 10.83 0.00 29.39 1.40
2308 2363 6.259167 CCAAAATACTTAGGCGCAGTACATTA 59.741 38.462 10.83 0.00 29.39 1.90
2309 2364 5.065988 CCAAAATACTTAGGCGCAGTACATT 59.934 40.000 10.83 5.21 29.39 2.71
2310 2365 4.574828 CCAAAATACTTAGGCGCAGTACAT 59.425 41.667 10.83 0.00 29.39 2.29
2311 2366 3.936453 CCAAAATACTTAGGCGCAGTACA 59.064 43.478 10.83 0.00 29.39 2.90
2312 2367 3.311596 CCCAAAATACTTAGGCGCAGTAC 59.688 47.826 10.83 0.00 29.39 2.73
2313 2368 3.198200 TCCCAAAATACTTAGGCGCAGTA 59.802 43.478 10.83 9.34 0.00 2.74
2314 2369 2.026636 TCCCAAAATACTTAGGCGCAGT 60.027 45.455 10.83 6.96 0.00 4.40
2315 2370 2.639065 TCCCAAAATACTTAGGCGCAG 58.361 47.619 10.83 0.00 0.00 5.18
2316 2371 2.791347 TCCCAAAATACTTAGGCGCA 57.209 45.000 10.83 0.00 0.00 6.09
2317 2372 5.959618 ATAATCCCAAAATACTTAGGCGC 57.040 39.130 0.00 0.00 0.00 6.53
2318 2373 7.145323 CCAAATAATCCCAAAATACTTAGGCG 58.855 38.462 0.00 0.00 0.00 5.52
2319 2374 8.018537 ACCAAATAATCCCAAAATACTTAGGC 57.981 34.615 0.00 0.00 0.00 3.93
2323 2378 9.430623 CGAAAACCAAATAATCCCAAAATACTT 57.569 29.630 0.00 0.00 0.00 2.24
2324 2379 8.590204 ACGAAAACCAAATAATCCCAAAATACT 58.410 29.630 0.00 0.00 0.00 2.12
2325 2380 8.766000 ACGAAAACCAAATAATCCCAAAATAC 57.234 30.769 0.00 0.00 0.00 1.89
2327 2382 9.430623 CTTACGAAAACCAAATAATCCCAAAAT 57.569 29.630 0.00 0.00 0.00 1.82
2328 2383 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
2329 2384 8.179509 TCTTACGAAAACCAAATAATCCCAAA 57.820 30.769 0.00 0.00 0.00 3.28
2330 2385 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
2331 2386 7.612244 TCATCTTACGAAAACCAAATAATCCCA 59.388 33.333 0.00 0.00 0.00 4.37
2332 2387 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
2333 2388 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
2350 2405 6.093219 GTCGTCTAGGTGTGTAAGTCATCTTA 59.907 42.308 0.00 0.00 35.36 2.10
2351 2406 5.008331 TCGTCTAGGTGTGTAAGTCATCTT 58.992 41.667 0.00 0.00 37.65 2.40
2352 2407 4.395542 GTCGTCTAGGTGTGTAAGTCATCT 59.604 45.833 0.00 0.00 0.00 2.90
2353 2408 4.660105 GTCGTCTAGGTGTGTAAGTCATC 58.340 47.826 0.00 0.00 0.00 2.92
2354 2409 3.126514 CGTCGTCTAGGTGTGTAAGTCAT 59.873 47.826 0.00 0.00 0.00 3.06
2355 2410 2.481568 CGTCGTCTAGGTGTGTAAGTCA 59.518 50.000 0.00 0.00 0.00 3.41
2356 2411 2.159599 CCGTCGTCTAGGTGTGTAAGTC 60.160 54.545 0.00 0.00 0.00 3.01
2357 2412 1.808945 CCGTCGTCTAGGTGTGTAAGT 59.191 52.381 0.00 0.00 0.00 2.24
2358 2413 2.079158 TCCGTCGTCTAGGTGTGTAAG 58.921 52.381 0.00 0.00 0.00 2.34
2359 2414 2.079158 CTCCGTCGTCTAGGTGTGTAA 58.921 52.381 0.00 0.00 0.00 2.41
2360 2415 1.002430 ACTCCGTCGTCTAGGTGTGTA 59.998 52.381 0.00 0.00 33.54 2.90
2361 2416 0.250640 ACTCCGTCGTCTAGGTGTGT 60.251 55.000 0.00 0.00 33.54 3.72
2362 2417 1.664659 CTACTCCGTCGTCTAGGTGTG 59.335 57.143 0.00 0.00 35.98 3.82
2363 2418 1.277557 ACTACTCCGTCGTCTAGGTGT 59.722 52.381 0.00 0.00 37.84 4.16
2364 2419 2.021355 ACTACTCCGTCGTCTAGGTG 57.979 55.000 0.00 0.00 0.00 4.00
2365 2420 2.763448 ACTACTACTCCGTCGTCTAGGT 59.237 50.000 0.00 0.00 0.00 3.08
2366 2421 3.451141 ACTACTACTCCGTCGTCTAGG 57.549 52.381 0.00 0.00 0.00 3.02
2367 2422 5.181690 ACTACTACTACTCCGTCGTCTAG 57.818 47.826 0.00 0.00 0.00 2.43
2368 2423 5.823570 AGTACTACTACTACTCCGTCGTCTA 59.176 44.000 0.00 0.00 30.81 2.59
2369 2424 4.642885 AGTACTACTACTACTCCGTCGTCT 59.357 45.833 0.00 0.00 30.81 4.18
2370 2425 4.927422 AGTACTACTACTACTCCGTCGTC 58.073 47.826 0.00 0.00 30.81 4.20
2371 2426 4.993029 AGTACTACTACTACTCCGTCGT 57.007 45.455 0.00 0.00 30.81 4.34
2372 2427 6.507141 CGAAAAGTACTACTACTACTCCGTCG 60.507 46.154 0.00 0.00 32.46 5.12
2373 2428 6.531948 TCGAAAAGTACTACTACTACTCCGTC 59.468 42.308 0.00 0.00 32.46 4.79
2374 2429 6.398918 TCGAAAAGTACTACTACTACTCCGT 58.601 40.000 0.00 0.00 32.46 4.69
2375 2430 6.509358 GCTCGAAAAGTACTACTACTACTCCG 60.509 46.154 0.00 0.00 32.46 4.63
2376 2431 6.314896 TGCTCGAAAAGTACTACTACTACTCC 59.685 42.308 0.00 0.00 32.46 3.85
2377 2432 7.301068 TGCTCGAAAAGTACTACTACTACTC 57.699 40.000 0.00 0.00 32.46 2.59
2378 2433 7.862512 ATGCTCGAAAAGTACTACTACTACT 57.137 36.000 0.00 0.00 32.46 2.57
2379 2434 7.044183 GCAATGCTCGAAAAGTACTACTACTAC 60.044 40.741 0.00 0.00 32.46 2.73
2380 2435 6.971184 GCAATGCTCGAAAAGTACTACTACTA 59.029 38.462 0.00 0.00 32.46 1.82
2381 2436 5.805994 GCAATGCTCGAAAAGTACTACTACT 59.194 40.000 0.00 0.00 34.38 2.57
2382 2437 5.275788 CGCAATGCTCGAAAAGTACTACTAC 60.276 44.000 2.94 0.00 0.00 2.73
2383 2438 4.796830 CGCAATGCTCGAAAAGTACTACTA 59.203 41.667 2.94 0.00 0.00 1.82
2384 2439 3.612860 CGCAATGCTCGAAAAGTACTACT 59.387 43.478 2.94 0.00 0.00 2.57
2385 2440 3.611113 TCGCAATGCTCGAAAAGTACTAC 59.389 43.478 2.94 0.00 32.53 2.73
2386 2441 3.840468 TCGCAATGCTCGAAAAGTACTA 58.160 40.909 2.94 0.00 32.53 1.82
2387 2442 2.668457 CTCGCAATGCTCGAAAAGTACT 59.332 45.455 2.94 0.00 35.38 2.73
2388 2443 2.222819 CCTCGCAATGCTCGAAAAGTAC 60.223 50.000 2.94 0.00 35.38 2.73
2787 2844 1.090052 GTGGATTCCTGCCTGCGTAC 61.090 60.000 3.95 0.00 0.00 3.67
2986 3052 6.073440 ACGCGATAAAACAACACTAAACATCT 60.073 34.615 15.93 0.00 0.00 2.90
2987 3053 6.075280 ACGCGATAAAACAACACTAAACATC 58.925 36.000 15.93 0.00 0.00 3.06
3005 3078 2.893895 CTGCCTGCATGACGCGAT 60.894 61.111 15.93 0.00 46.97 4.58
3066 3139 1.700739 CACCCACCCTACTACACCAAA 59.299 52.381 0.00 0.00 0.00 3.28
3067 3140 1.354101 CACCCACCCTACTACACCAA 58.646 55.000 0.00 0.00 0.00 3.67
3068 3141 0.545787 CCACCCACCCTACTACACCA 60.546 60.000 0.00 0.00 0.00 4.17
3069 3142 1.269703 CCCACCCACCCTACTACACC 61.270 65.000 0.00 0.00 0.00 4.16
3070 3143 0.252375 TCCCACCCACCCTACTACAC 60.252 60.000 0.00 0.00 0.00 2.90
3071 3144 0.720232 ATCCCACCCACCCTACTACA 59.280 55.000 0.00 0.00 0.00 2.74
3166 3239 2.627945 CCGCCACTTTATTACTGCTGA 58.372 47.619 0.00 0.00 0.00 4.26
3232 3309 1.206072 GCAGCAGCAAACTCGACAG 59.794 57.895 0.00 0.00 41.58 3.51
3268 3350 7.654923 ACGGAGTAAAAAGAAAGTTACCACTAG 59.345 37.037 0.00 0.00 41.94 2.57
3269 3351 7.500141 ACGGAGTAAAAAGAAAGTTACCACTA 58.500 34.615 0.00 0.00 41.94 2.74
3270 3352 6.351711 ACGGAGTAAAAAGAAAGTTACCACT 58.648 36.000 0.00 0.00 41.94 4.00
3283 3365 0.955905 GCCAGCCAACGGAGTAAAAA 59.044 50.000 0.00 0.00 45.00 1.94
3381 3759 3.357079 CCTGCACGAACCACTGCC 61.357 66.667 0.00 0.00 31.97 4.85
3538 3920 5.060506 TCGGAGAAACAGCACAGAAATAAA 58.939 37.500 0.00 0.00 0.00 1.40
3559 3941 3.510388 TGCTTGTCCTATCTTGTCTCG 57.490 47.619 0.00 0.00 0.00 4.04
3646 4304 7.318141 TCTTCCACGGTAAAGAAACACTATAG 58.682 38.462 0.00 0.00 0.00 1.31
3648 4306 6.105397 TCTTCCACGGTAAAGAAACACTAT 57.895 37.500 3.43 0.00 0.00 2.12
3691 4625 2.978156 AGGCCAAACCAAGAGATCAA 57.022 45.000 5.01 0.00 43.14 2.57
3713 4647 6.546972 AAACTTTTGCCTTCGTTTCAAAAA 57.453 29.167 0.00 0.00 38.65 1.94
3714 4648 6.366630 CAAAACTTTTGCCTTCGTTTCAAAA 58.633 32.000 1.30 0.00 37.36 2.44
3715 4649 5.615764 GCAAAACTTTTGCCTTCGTTTCAAA 60.616 36.000 23.40 0.00 39.38 2.69
3716 4650 4.143009 GCAAAACTTTTGCCTTCGTTTCAA 60.143 37.500 23.40 0.00 39.38 2.69
3717 4651 3.369451 GCAAAACTTTTGCCTTCGTTTCA 59.631 39.130 23.40 0.00 39.38 2.69
3718 4652 3.923412 GCAAAACTTTTGCCTTCGTTTC 58.077 40.909 23.40 0.00 39.38 2.78
3727 4661 7.188468 TCAATGAATAAGGCAAAACTTTTGC 57.812 32.000 25.11 25.11 44.22 3.68
3737 4671 9.685276 TCTTCTTCTTAATCAATGAATAAGGCA 57.315 29.630 15.66 5.02 29.11 4.75
3744 4678 8.725148 GCAACTCTCTTCTTCTTAATCAATGAA 58.275 33.333 0.00 0.00 0.00 2.57
3745 4679 7.335422 GGCAACTCTCTTCTTCTTAATCAATGA 59.665 37.037 0.00 0.00 0.00 2.57
3746 4680 7.470900 GGCAACTCTCTTCTTCTTAATCAATG 58.529 38.462 0.00 0.00 0.00 2.82
3747 4681 7.622893 GGCAACTCTCTTCTTCTTAATCAAT 57.377 36.000 0.00 0.00 0.00 2.57
3766 4700 4.769859 TTCCGTAAATTAACCAGGCAAC 57.230 40.909 0.00 0.00 0.00 4.17
3767 4701 5.509332 GGTTTTCCGTAAATTAACCAGGCAA 60.509 40.000 0.00 0.00 38.46 4.52
3768 4702 4.022155 GGTTTTCCGTAAATTAACCAGGCA 60.022 41.667 0.00 0.00 38.46 4.75
3769 4703 4.022155 TGGTTTTCCGTAAATTAACCAGGC 60.022 41.667 3.16 0.00 42.29 4.85
3770 4704 5.708877 TGGTTTTCCGTAAATTAACCAGG 57.291 39.130 3.16 0.00 42.29 4.45
3772 4706 4.022155 GCCTGGTTTTCCGTAAATTAACCA 60.022 41.667 6.57 6.57 44.26 3.67
3773 4707 4.487948 GCCTGGTTTTCCGTAAATTAACC 58.512 43.478 0.00 0.00 44.36 2.85
3774 4708 4.083377 TCGCCTGGTTTTCCGTAAATTAAC 60.083 41.667 0.00 0.00 44.36 2.01
3775 4709 4.070716 TCGCCTGGTTTTCCGTAAATTAA 58.929 39.130 0.00 0.00 44.36 1.40
3776 4710 3.672808 TCGCCTGGTTTTCCGTAAATTA 58.327 40.909 0.00 0.00 44.36 1.40
3777 4711 2.506444 TCGCCTGGTTTTCCGTAAATT 58.494 42.857 0.00 0.00 44.36 1.82
3778 4712 2.188062 TCGCCTGGTTTTCCGTAAAT 57.812 45.000 0.00 0.00 44.36 1.40
3779 4713 1.874872 CTTCGCCTGGTTTTCCGTAAA 59.125 47.619 0.00 0.00 44.36 2.01
3780 4714 1.070445 TCTTCGCCTGGTTTTCCGTAA 59.930 47.619 0.00 0.00 44.36 3.18
3781 4715 0.680618 TCTTCGCCTGGTTTTCCGTA 59.319 50.000 0.00 0.00 44.36 4.02
3782 4716 0.883370 GTCTTCGCCTGGTTTTCCGT 60.883 55.000 0.00 0.00 44.36 4.69
3783 4717 1.574702 GGTCTTCGCCTGGTTTTCCG 61.575 60.000 0.00 0.00 44.36 4.30
3784 4718 1.574702 CGGTCTTCGCCTGGTTTTCC 61.575 60.000 0.00 0.00 41.14 3.13
3785 4719 0.883370 ACGGTCTTCGCCTGGTTTTC 60.883 55.000 0.00 0.00 43.89 2.29
3786 4720 0.883370 GACGGTCTTCGCCTGGTTTT 60.883 55.000 0.00 0.00 43.89 2.43
3787 4721 1.301479 GACGGTCTTCGCCTGGTTT 60.301 57.895 0.00 0.00 43.89 3.27
3788 4722 2.156051 GAGACGGTCTTCGCCTGGTT 62.156 60.000 12.67 0.00 43.89 3.67
3789 4723 2.600769 AGACGGTCTTCGCCTGGT 60.601 61.111 4.45 0.00 43.89 4.00
3790 4724 1.878656 AAGAGACGGTCTTCGCCTGG 61.879 60.000 12.67 0.00 42.26 4.45
3791 4725 0.734253 CAAGAGACGGTCTTCGCCTG 60.734 60.000 12.67 2.35 44.28 4.85
3792 4726 1.587054 CAAGAGACGGTCTTCGCCT 59.413 57.895 12.67 1.56 44.28 5.52
3793 4727 1.446272 CCAAGAGACGGTCTTCGCC 60.446 63.158 12.67 0.00 44.28 5.54
3794 4728 0.319641 AACCAAGAGACGGTCTTCGC 60.320 55.000 12.67 0.00 44.28 4.70
3795 4729 1.792949 CAAACCAAGAGACGGTCTTCG 59.207 52.381 12.67 3.97 44.28 3.79
3796 4730 2.143925 CCAAACCAAGAGACGGTCTTC 58.856 52.381 12.67 5.86 44.28 2.87
3798 4732 0.250338 GCCAAACCAAGAGACGGTCT 60.250 55.000 11.09 11.09 34.99 3.85
3799 4733 1.235281 GGCCAAACCAAGAGACGGTC 61.235 60.000 0.00 0.00 34.99 4.79
3800 4734 1.228154 GGCCAAACCAAGAGACGGT 60.228 57.895 0.00 0.00 38.85 4.83
3801 4735 0.537371 AAGGCCAAACCAAGAGACGG 60.537 55.000 5.01 0.00 43.14 4.79
3802 4736 0.875059 GAAGGCCAAACCAAGAGACG 59.125 55.000 5.01 0.00 43.14 4.18
3803 4737 1.981256 TGAAGGCCAAACCAAGAGAC 58.019 50.000 5.01 0.00 43.14 3.36
3804 4738 2.158475 ACATGAAGGCCAAACCAAGAGA 60.158 45.455 5.01 0.00 43.14 3.10
3805 4739 2.229784 GACATGAAGGCCAAACCAAGAG 59.770 50.000 5.01 0.00 43.14 2.85
3806 4740 2.238521 GACATGAAGGCCAAACCAAGA 58.761 47.619 5.01 0.00 43.14 3.02
3807 4741 1.962807 TGACATGAAGGCCAAACCAAG 59.037 47.619 5.01 0.00 43.14 3.61
3808 4742 1.962807 CTGACATGAAGGCCAAACCAA 59.037 47.619 5.01 0.00 43.14 3.67
3809 4743 1.619654 CTGACATGAAGGCCAAACCA 58.380 50.000 5.01 0.00 43.14 3.67
3810 4744 0.244721 GCTGACATGAAGGCCAAACC 59.755 55.000 5.01 0.00 39.61 3.27
3811 4745 0.961019 TGCTGACATGAAGGCCAAAC 59.039 50.000 5.01 0.00 0.00 2.93
3812 4746 0.961019 GTGCTGACATGAAGGCCAAA 59.039 50.000 5.01 0.00 0.00 3.28
3813 4747 1.236616 CGTGCTGACATGAAGGCCAA 61.237 55.000 5.01 0.00 34.49 4.52
3814 4748 1.672030 CGTGCTGACATGAAGGCCA 60.672 57.895 5.01 0.00 34.49 5.36
3815 4749 1.375908 TCGTGCTGACATGAAGGCC 60.376 57.895 0.00 0.00 38.89 5.19
3816 4750 4.284123 TCGTGCTGACATGAAGGC 57.716 55.556 0.00 0.38 38.89 4.35
3829 4763 2.330231 ATTGATGCCAAAACGTCGTG 57.670 45.000 0.00 0.00 35.67 4.35
3859 4793 1.404035 GTTTGGGTCAACGTTGCTCTT 59.596 47.619 23.47 0.00 0.00 2.85
3860 4794 1.021968 GTTTGGGTCAACGTTGCTCT 58.978 50.000 23.47 0.00 0.00 4.09
3861 4795 0.316689 CGTTTGGGTCAACGTTGCTC 60.317 55.000 23.47 17.83 0.00 4.26
3862 4796 1.720694 CCGTTTGGGTCAACGTTGCT 61.721 55.000 23.47 0.00 0.00 3.91
3863 4797 1.298788 CCGTTTGGGTCAACGTTGC 60.299 57.895 23.47 17.23 0.00 4.17
3864 4798 0.028374 GTCCGTTTGGGTCAACGTTG 59.972 55.000 22.35 22.35 37.00 4.10
3865 4799 0.392729 TGTCCGTTTGGGTCAACGTT 60.393 50.000 0.00 0.00 37.00 3.99
3866 4800 0.812412 CTGTCCGTTTGGGTCAACGT 60.812 55.000 5.35 0.00 33.32 3.99
3867 4801 1.938861 CTGTCCGTTTGGGTCAACG 59.061 57.895 0.00 0.00 33.32 4.10
3868 4802 1.652563 GCTGTCCGTTTGGGTCAAC 59.347 57.895 0.00 0.00 33.32 3.18
3869 4803 1.890041 CGCTGTCCGTTTGGGTCAA 60.890 57.895 0.00 0.00 33.32 3.18
3870 4804 2.107041 ATCGCTGTCCGTTTGGGTCA 62.107 55.000 0.00 0.00 38.35 4.02
3871 4805 0.953960 AATCGCTGTCCGTTTGGGTC 60.954 55.000 0.00 0.00 38.35 4.46
3872 4806 0.536460 AAATCGCTGTCCGTTTGGGT 60.536 50.000 0.00 0.00 38.35 4.51
3873 4807 0.596082 AAAATCGCTGTCCGTTTGGG 59.404 50.000 0.00 0.00 38.35 4.12
3874 4808 1.001815 ACAAAATCGCTGTCCGTTTGG 60.002 47.619 0.00 0.00 37.28 3.28
3875 4809 2.307049 GACAAAATCGCTGTCCGTTTG 58.693 47.619 0.00 0.00 37.77 2.93
3876 4810 2.681152 GACAAAATCGCTGTCCGTTT 57.319 45.000 0.00 0.00 37.77 3.60
3881 4815 2.681152 AAACGGACAAAATCGCTGTC 57.319 45.000 0.00 0.00 42.08 3.51
3882 4816 2.482721 CCTAAACGGACAAAATCGCTGT 59.517 45.455 0.00 0.00 33.16 4.40
3883 4817 2.727916 GCCTAAACGGACAAAATCGCTG 60.728 50.000 0.00 0.00 33.16 5.18
3884 4818 1.467342 GCCTAAACGGACAAAATCGCT 59.533 47.619 0.00 0.00 33.16 4.93
3885 4819 1.467342 AGCCTAAACGGACAAAATCGC 59.533 47.619 0.00 0.00 33.16 4.58
3886 4820 2.159572 CCAGCCTAAACGGACAAAATCG 60.160 50.000 0.00 0.00 33.16 3.34
3887 4821 2.415491 GCCAGCCTAAACGGACAAAATC 60.415 50.000 0.00 0.00 33.16 2.17
3888 4822 1.544246 GCCAGCCTAAACGGACAAAAT 59.456 47.619 0.00 0.00 33.16 1.82
3889 4823 0.955905 GCCAGCCTAAACGGACAAAA 59.044 50.000 0.00 0.00 33.16 2.44
3890 4824 0.891904 GGCCAGCCTAAACGGACAAA 60.892 55.000 0.00 0.00 33.16 2.83
3891 4825 1.302993 GGCCAGCCTAAACGGACAA 60.303 57.895 0.00 0.00 33.16 3.18
3892 4826 2.349755 GGCCAGCCTAAACGGACA 59.650 61.111 0.00 0.00 33.16 4.02
3893 4827 2.038837 GTGGCCAGCCTAAACGGAC 61.039 63.158 5.11 0.00 36.94 4.79
3894 4828 2.349755 GTGGCCAGCCTAAACGGA 59.650 61.111 5.11 0.00 36.94 4.69
3895 4829 2.750237 GGTGGCCAGCCTAAACGG 60.750 66.667 24.79 0.00 36.94 4.44
3896 4830 2.750237 GGGTGGCCAGCCTAAACG 60.750 66.667 40.68 0.00 45.14 3.60
3897 4831 2.750237 CGGGTGGCCAGCCTAAAC 60.750 66.667 42.44 22.46 46.33 2.01
3898 4832 4.733542 GCGGGTGGCCAGCCTAAA 62.734 66.667 42.44 1.84 46.33 1.85
3903 4837 2.965716 ATATCAAGCGGGTGGCCAGC 62.966 60.000 27.04 27.04 44.77 4.85
3904 4838 0.886490 GATATCAAGCGGGTGGCCAG 60.886 60.000 5.11 0.00 45.17 4.85
3905 4839 1.148273 GATATCAAGCGGGTGGCCA 59.852 57.895 0.00 0.00 45.17 5.36
3906 4840 0.886490 CAGATATCAAGCGGGTGGCC 60.886 60.000 5.32 0.00 45.17 5.36
3907 4841 0.179045 ACAGATATCAAGCGGGTGGC 60.179 55.000 5.32 0.00 44.05 5.01
3908 4842 2.332063 AACAGATATCAAGCGGGTGG 57.668 50.000 5.32 0.00 0.00 4.61
3909 4843 4.701956 AAAAACAGATATCAAGCGGGTG 57.298 40.909 5.32 0.00 0.00 4.61
3928 4862 1.271102 GGGTGCATTGCCGACTAAAAA 59.729 47.619 6.12 0.00 0.00 1.94
3929 4863 0.885196 GGGTGCATTGCCGACTAAAA 59.115 50.000 6.12 0.00 0.00 1.52
3930 4864 0.250945 TGGGTGCATTGCCGACTAAA 60.251 50.000 6.12 0.00 0.00 1.85
3931 4865 0.250945 TTGGGTGCATTGCCGACTAA 60.251 50.000 6.12 0.00 0.00 2.24
3932 4866 0.958382 GTTGGGTGCATTGCCGACTA 60.958 55.000 6.12 0.00 0.00 2.59
3933 4867 2.115052 TTGGGTGCATTGCCGACT 59.885 55.556 6.12 0.00 0.00 4.18
3934 4868 2.258286 GTTGGGTGCATTGCCGAC 59.742 61.111 6.12 0.00 0.00 4.79
3935 4869 2.203408 TGTTGGGTGCATTGCCGA 60.203 55.556 6.12 0.00 0.00 5.54
3936 4870 2.049248 GTGTTGGGTGCATTGCCG 60.049 61.111 6.12 0.00 0.00 5.69
3937 4871 2.049248 CGTGTTGGGTGCATTGCC 60.049 61.111 6.12 0.00 0.00 4.52
3938 4872 1.081242 CTCGTGTTGGGTGCATTGC 60.081 57.895 0.46 0.46 0.00 3.56
3939 4873 1.081242 GCTCGTGTTGGGTGCATTG 60.081 57.895 0.00 0.00 0.00 2.82
3940 4874 0.895100 ATGCTCGTGTTGGGTGCATT 60.895 50.000 0.00 0.00 40.88 3.56
3941 4875 1.303561 ATGCTCGTGTTGGGTGCAT 60.304 52.632 0.00 0.00 39.21 3.96
3942 4876 2.112928 ATGCTCGTGTTGGGTGCA 59.887 55.556 0.00 0.00 38.05 4.57
3943 4877 1.795170 AACATGCTCGTGTTGGGTGC 61.795 55.000 6.67 0.00 40.60 5.01
3944 4878 1.518325 TAACATGCTCGTGTTGGGTG 58.482 50.000 15.52 0.00 42.02 4.61
3945 4879 1.877443 GTTAACATGCTCGTGTTGGGT 59.123 47.619 15.52 0.00 42.02 4.51
3946 4880 1.136085 CGTTAACATGCTCGTGTTGGG 60.136 52.381 15.52 3.53 42.02 4.12
3947 4881 1.795872 TCGTTAACATGCTCGTGTTGG 59.204 47.619 15.52 6.85 42.02 3.77
3948 4882 2.159841 CCTCGTTAACATGCTCGTGTTG 60.160 50.000 15.52 2.15 42.02 3.33
3949 4883 2.066262 CCTCGTTAACATGCTCGTGTT 58.934 47.619 11.62 11.62 44.09 3.32
3950 4884 1.000506 ACCTCGTTAACATGCTCGTGT 59.999 47.619 6.39 0.00 0.00 4.49
3951 4885 1.710013 ACCTCGTTAACATGCTCGTG 58.290 50.000 6.39 0.00 0.00 4.35
3952 4886 2.450609 AACCTCGTTAACATGCTCGT 57.549 45.000 6.39 0.00 0.00 4.18
3953 4887 3.303495 CAGTAACCTCGTTAACATGCTCG 59.697 47.826 6.39 0.00 29.42 5.03
3954 4888 4.243270 ACAGTAACCTCGTTAACATGCTC 58.757 43.478 6.39 0.00 29.42 4.26
3955 4889 4.243270 GACAGTAACCTCGTTAACATGCT 58.757 43.478 6.39 0.00 29.42 3.79
3956 4890 3.370061 GGACAGTAACCTCGTTAACATGC 59.630 47.826 6.39 0.00 29.42 4.06
3957 4891 3.930848 GGGACAGTAACCTCGTTAACATG 59.069 47.826 6.39 0.00 29.42 3.21
3958 4892 3.579586 TGGGACAGTAACCTCGTTAACAT 59.420 43.478 6.39 0.00 29.42 2.71
3959 4893 2.964464 TGGGACAGTAACCTCGTTAACA 59.036 45.455 6.39 0.00 29.42 2.41
3960 4894 3.665745 TGGGACAGTAACCTCGTTAAC 57.334 47.619 0.00 0.00 29.42 2.01
3974 4908 2.305635 TGCTTCAGCTAATTCTGGGACA 59.694 45.455 0.00 0.00 42.66 4.02
3975 4909 2.680339 GTGCTTCAGCTAATTCTGGGAC 59.320 50.000 0.00 0.00 42.66 4.46
3976 4910 2.573462 AGTGCTTCAGCTAATTCTGGGA 59.427 45.455 0.00 0.00 42.66 4.37
3977 4911 2.996631 AGTGCTTCAGCTAATTCTGGG 58.003 47.619 0.00 0.00 42.66 4.45
3978 4912 6.057627 CATTAGTGCTTCAGCTAATTCTGG 57.942 41.667 0.00 0.00 42.66 3.86
3994 4928 0.301687 CGCACGCCTTAGCATTAGTG 59.698 55.000 0.00 0.00 39.83 2.74
3995 4929 0.810031 CCGCACGCCTTAGCATTAGT 60.810 55.000 0.00 0.00 39.83 2.24
3996 4930 0.810031 ACCGCACGCCTTAGCATTAG 60.810 55.000 0.00 0.00 39.83 1.73
3997 4931 1.087202 CACCGCACGCCTTAGCATTA 61.087 55.000 0.00 0.00 39.83 1.90
3998 4932 2.046314 ACCGCACGCCTTAGCATT 60.046 55.556 0.00 0.00 39.83 3.56
3999 4933 2.819595 CACCGCACGCCTTAGCAT 60.820 61.111 0.00 0.00 39.83 3.79
4000 4934 3.997397 TCACCGCACGCCTTAGCA 61.997 61.111 0.00 0.00 39.83 3.49
4001 4935 3.488090 GTCACCGCACGCCTTAGC 61.488 66.667 0.00 0.00 0.00 3.09
4002 4936 1.805945 GAGTCACCGCACGCCTTAG 60.806 63.158 0.00 0.00 0.00 2.18
4003 4937 2.209064 GAGAGTCACCGCACGCCTTA 62.209 60.000 0.00 0.00 0.00 2.69
4004 4938 3.575351 GAGAGTCACCGCACGCCTT 62.575 63.158 0.00 0.00 0.00 4.35
4005 4939 4.057428 GAGAGTCACCGCACGCCT 62.057 66.667 0.00 0.00 0.00 5.52
4006 4940 4.357947 TGAGAGTCACCGCACGCC 62.358 66.667 0.00 0.00 0.00 5.68
4007 4941 3.106407 GTGAGAGTCACCGCACGC 61.106 66.667 0.00 0.00 41.37 5.34
4021 4955 3.181449 TGAAAATTCTTCCTCACGGGTGA 60.181 43.478 1.05 1.05 38.06 4.02
4022 4956 3.146066 TGAAAATTCTTCCTCACGGGTG 58.854 45.455 0.00 0.00 36.25 4.61
4023 4957 3.502123 TGAAAATTCTTCCTCACGGGT 57.498 42.857 0.00 0.00 36.25 5.28
4024 4958 4.072131 TCTTGAAAATTCTTCCTCACGGG 58.928 43.478 0.00 0.00 0.00 5.28
4025 4959 4.378874 GCTCTTGAAAATTCTTCCTCACGG 60.379 45.833 0.00 0.00 0.00 4.94
4026 4960 4.378874 GGCTCTTGAAAATTCTTCCTCACG 60.379 45.833 0.00 0.00 0.00 4.35
4027 4961 4.378874 CGGCTCTTGAAAATTCTTCCTCAC 60.379 45.833 0.00 0.00 0.00 3.51
4028 4962 3.753272 CGGCTCTTGAAAATTCTTCCTCA 59.247 43.478 0.00 0.00 0.00 3.86
4029 4963 3.753797 ACGGCTCTTGAAAATTCTTCCTC 59.246 43.478 0.00 0.00 0.00 3.71
4030 4964 3.756117 ACGGCTCTTGAAAATTCTTCCT 58.244 40.909 0.00 0.00 0.00 3.36
4031 4965 4.505313 AACGGCTCTTGAAAATTCTTCC 57.495 40.909 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.