Multiple sequence alignment - TraesCS5B01G124200

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G124200 chr5B 100.000 3559 0 0 3708 7266 224323689 224320131 0.000000e+00 6573.0
1 TraesCS5B01G124200 chr5B 100.000 3398 0 0 1 3398 224327396 224323999 0.000000e+00 6276.0
2 TraesCS5B01G124200 chr5B 88.195 737 50 19 6561 7266 95127073 95126343 0.000000e+00 845.0
3 TraesCS5B01G124200 chr5B 85.714 574 73 6 4247 4812 391231280 391230708 1.350000e-166 597.0
4 TraesCS5B01G124200 chr5B 94.872 156 3 5 1725 1878 345346865 345346713 9.420000e-59 239.0
5 TraesCS5B01G124200 chr5B 100.000 128 0 0 1735 1862 555175603 555175730 3.390000e-58 237.0
6 TraesCS5B01G124200 chr5B 98.496 133 1 1 1735 1867 626068696 626068827 4.380000e-57 233.0
7 TraesCS5B01G124200 chr5B 89.655 87 9 0 4161 4247 484883370 484883284 2.140000e-20 111.0
8 TraesCS5B01G124200 chr5B 87.234 94 12 0 4162 4255 510229565 510229658 2.770000e-19 108.0
9 TraesCS5B01G124200 chr5D 97.599 1541 30 7 1860 3397 210680913 210679377 0.000000e+00 2634.0
10 TraesCS5B01G124200 chr5D 96.507 1317 32 4 422 1736 210682214 210680910 0.000000e+00 2165.0
11 TraesCS5B01G124200 chr5D 95.671 1132 32 7 5418 6538 210677395 210676270 0.000000e+00 1803.0
12 TraesCS5B01G124200 chr5D 95.992 1048 37 3 3775 4820 210679236 210678192 0.000000e+00 1698.0
13 TraesCS5B01G124200 chr5D 96.667 510 17 0 4816 5325 210677902 210677393 0.000000e+00 848.0
14 TraesCS5B01G124200 chr5D 87.136 412 43 6 14 421 262034472 262034067 6.640000e-125 459.0
15 TraesCS5B01G124200 chr5D 86.893 412 44 5 14 421 126512843 126513248 3.090000e-123 453.0
16 TraesCS5B01G124200 chr5D 86.408 412 46 6 14 421 413049589 413049994 6.690000e-120 442.0
17 TraesCS5B01G124200 chr5D 84.941 425 54 7 1 421 543840441 543840023 8.720000e-114 422.0
18 TraesCS5B01G124200 chr5D 100.000 127 0 0 1735 1861 179062935 179063061 1.220000e-57 235.0
19 TraesCS5B01G124200 chr5D 97.761 134 2 1 1732 1864 76220046 76219913 5.670000e-56 230.0
20 TraesCS5B01G124200 chr5D 97.143 105 2 1 5316 5419 500862555 500862451 7.490000e-40 176.0
21 TraesCS5B01G124200 chr5D 90.698 86 8 0 4162 4247 542387294 542387379 1.660000e-21 115.0
22 TraesCS5B01G124200 chr5D 95.312 64 3 0 3708 3771 210679335 210679272 1.290000e-17 102.0
23 TraesCS5B01G124200 chr5A 95.444 1317 53 4 4009 5325 272948831 272947522 0.000000e+00 2093.0
24 TraesCS5B01G124200 chr5A 93.015 1360 71 14 5418 6764 272947524 272946176 0.000000e+00 1964.0
25 TraesCS5B01G124200 chr5A 96.211 1135 27 5 609 1736 272951639 272950514 0.000000e+00 1844.0
26 TraesCS5B01G124200 chr5A 96.164 1095 26 6 2300 3392 272949926 272948846 0.000000e+00 1775.0
27 TraesCS5B01G124200 chr5A 85.589 569 68 9 4247 4807 9842712 9842150 1.050000e-162 584.0
28 TraesCS5B01G124200 chr5A 89.213 445 17 17 1860 2301 272950515 272950099 1.800000e-145 527.0
29 TraesCS5B01G124200 chr5A 86.747 415 45 6 14 423 258261621 258262030 3.090000e-123 453.0
30 TraesCS5B01G124200 chr5A 85.116 430 53 8 1 426 306910819 306910397 5.210000e-116 429.0
31 TraesCS5B01G124200 chr5A 86.788 386 44 5 3781 4160 350799857 350800241 2.420000e-114 424.0
32 TraesCS5B01G124200 chr5A 89.297 327 29 1 4802 5128 23607672 23607352 8.780000e-109 405.0
33 TraesCS5B01G124200 chr5A 94.118 187 11 0 6370 6556 272901130 272900944 1.190000e-72 285.0
34 TraesCS5B01G124200 chr5A 91.146 192 8 1 422 613 272953242 272953060 1.210000e-62 252.0
35 TraesCS5B01G124200 chr5A 98.485 132 2 0 1730 1861 46616319 46616188 4.380000e-57 233.0
36 TraesCS5B01G124200 chr5A 96.875 128 4 0 1735 1862 36944640 36944513 1.590000e-51 215.0
37 TraesCS5B01G124200 chr5A 88.298 94 8 1 2367 2460 272949773 272949683 7.710000e-20 110.0
38 TraesCS5B01G124200 chr6B 88.363 739 51 11 6561 7266 620620362 620621098 0.000000e+00 856.0
39 TraesCS5B01G124200 chr6B 87.588 427 40 8 1 422 222823955 222823537 3.940000e-132 483.0
40 TraesCS5B01G124200 chr6B 98.485 132 2 0 1733 1864 644808895 644809026 4.380000e-57 233.0
41 TraesCS5B01G124200 chr6B 97.143 105 1 2 5316 5419 718346916 718346813 7.490000e-40 176.0
42 TraesCS5B01G124200 chr6B 78.157 293 33 21 1860 2132 29786202 29785921 2.710000e-34 158.0
43 TraesCS5B01G124200 chr6B 79.512 205 40 2 2009 2213 447884322 447884524 2.110000e-30 145.0
44 TraesCS5B01G124200 chr6B 97.368 38 0 1 4770 4806 68110028 68110065 6.090000e-06 63.9
45 TraesCS5B01G124200 chr1B 88.227 739 53 18 6560 7266 687136376 687137112 0.000000e+00 852.0
46 TraesCS5B01G124200 chr1B 83.644 697 59 23 6560 7227 4008941 4008271 8.060000e-169 604.0
47 TraesCS5B01G124200 chr1B 86.076 395 47 6 3772 4160 325265100 325264708 1.130000e-112 418.0
48 TraesCS5B01G124200 chr1B 85.500 400 50 7 3772 4165 325268046 325267649 1.890000e-110 411.0
49 TraesCS5B01G124200 chr1B 99.231 130 1 0 1732 1861 277456428 277456299 1.220000e-57 235.0
50 TraesCS5B01G124200 chr1B 99.231 130 1 0 1733 1862 601258971 601258842 1.220000e-57 235.0
51 TraesCS5B01G124200 chr1B 97.810 137 1 2 1727 1861 623397572 623397436 1.220000e-57 235.0
52 TraesCS5B01G124200 chr1B 97.196 107 3 0 5323 5429 526192315 526192421 1.610000e-41 182.0
53 TraesCS5B01G124200 chr1B 96.262 107 4 0 5317 5423 156596557 156596663 7.490000e-40 176.0
54 TraesCS5B01G124200 chr3B 88.211 738 52 19 6561 7266 829355595 829354861 0.000000e+00 848.0
55 TraesCS5B01G124200 chr3B 85.017 574 75 8 4247 4812 784932678 784933248 2.270000e-159 573.0
56 TraesCS5B01G124200 chr3B 76.615 449 72 19 1860 2281 704260739 704260297 4.410000e-52 217.0
57 TraesCS5B01G124200 chr3B 100.000 31 0 0 2198 2228 68902733 68902703 2.830000e-04 58.4
58 TraesCS5B01G124200 chr1D 87.785 745 57 17 6555 7266 493977000 493976257 0.000000e+00 841.0
59 TraesCS5B01G124200 chr1D 86.893 412 44 5 14 421 203067685 203068090 3.090000e-123 453.0
60 TraesCS5B01G124200 chr1D 86.441 413 45 6 14 421 315531540 315531134 6.690000e-120 442.0
61 TraesCS5B01G124200 chr1D 85.647 425 51 6 1 421 483606464 483606882 8.650000e-119 438.0
62 TraesCS5B01G124200 chr1D 86.165 412 46 6 14 421 291382894 291383298 1.120000e-117 435.0
63 TraesCS5B01G124200 chr1D 86.364 396 46 6 3772 4162 33747716 33748108 6.740000e-115 425.0
64 TraesCS5B01G124200 chr1D 86.632 389 45 5 1 385 87126227 87125842 2.420000e-114 424.0
65 TraesCS5B01G124200 chr1D 98.473 131 1 1 1732 1861 368493681 368493811 5.670000e-56 230.0
66 TraesCS5B01G124200 chr1D 97.710 131 2 1 1732 1861 178459642 178459512 2.640000e-54 224.0
67 TraesCS5B01G124200 chr1D 96.296 135 5 0 1730 1864 324990909 324991043 9.490000e-54 222.0
68 TraesCS5B01G124200 chr1D 98.058 103 2 0 5317 5419 315816901 315817003 5.790000e-41 180.0
69 TraesCS5B01G124200 chr1D 76.562 320 63 11 1996 2308 54851508 54851194 1.620000e-36 165.0
70 TraesCS5B01G124200 chr1D 77.654 179 37 2 2121 2298 211507423 211507599 9.970000e-19 106.0
71 TraesCS5B01G124200 chr4A 87.755 735 53 21 6563 7266 739719468 739720196 0.000000e+00 824.0
72 TraesCS5B01G124200 chr4A 87.381 737 56 21 6561 7266 742114675 742115405 0.000000e+00 811.0
73 TraesCS5B01G124200 chr4A 86.014 572 67 6 4247 4812 533012801 533013365 1.040000e-167 601.0
74 TraesCS5B01G124200 chr4A 87.629 97 11 1 4156 4252 295026927 295026832 2.140000e-20 111.0
75 TraesCS5B01G124200 chr4B 87.722 733 51 18 6571 7266 460745015 460744285 0.000000e+00 819.0
76 TraesCS5B01G124200 chr4B 87.366 744 57 19 6558 7266 560046905 560046164 0.000000e+00 819.0
77 TraesCS5B01G124200 chr4B 85.913 575 71 7 4245 4812 260049954 260050525 8.060000e-169 604.0
78 TraesCS5B01G124200 chr4B 89.634 328 28 5 4802 5129 101965454 101965775 5.250000e-111 412.0
79 TraesCS5B01G124200 chr4B 99.231 130 1 0 1732 1861 82019251 82019122 1.220000e-57 235.0
80 TraesCS5B01G124200 chr4B 99.225 129 1 0 1735 1863 514055890 514055762 4.380000e-57 233.0
81 TraesCS5B01G124200 chr4B 98.462 130 2 0 1735 1864 576982568 576982439 5.670000e-56 230.0
82 TraesCS5B01G124200 chr4B 96.350 137 5 0 1735 1871 94205851 94205715 7.330000e-55 226.0
83 TraesCS5B01G124200 chr4B 97.710 131 3 0 1732 1862 653214421 653214291 7.330000e-55 226.0
84 TraesCS5B01G124200 chr4B 95.035 141 7 0 1734 1874 622114869 622115009 9.490000e-54 222.0
85 TraesCS5B01G124200 chr4B 93.243 148 7 3 1715 1861 654507764 654507619 1.590000e-51 215.0
86 TraesCS5B01G124200 chr4B 87.500 96 11 1 4161 4255 656199666 656199761 7.710000e-20 110.0
87 TraesCS5B01G124200 chr4D 87.332 742 57 19 6560 7266 488667392 488668131 0.000000e+00 815.0
88 TraesCS5B01G124200 chr4D 85.515 573 64 11 4247 4812 392737733 392737173 1.360000e-161 580.0
89 TraesCS5B01G124200 chr4D 86.824 425 46 5 1 421 453361319 453360901 3.970000e-127 466.0
90 TraesCS5B01G124200 chr4D 86.588 425 47 6 1 421 21158273 21157855 1.850000e-125 460.0
91 TraesCS5B01G124200 chr4D 86.650 412 45 5 14 421 224848337 224847932 1.440000e-121 448.0
92 TraesCS5B01G124200 chr4D 85.882 425 49 7 1 421 444126639 444127056 6.690000e-120 442.0
93 TraesCS5B01G124200 chr4D 85.823 395 51 5 3772 4162 303077899 303078292 1.460000e-111 414.0
94 TraesCS5B01G124200 chr4D 84.272 426 46 11 1 421 54705055 54705464 5.280000e-106 396.0
95 TraesCS5B01G124200 chr4D 98.438 128 2 0 1735 1862 497646534 497646661 7.330000e-55 226.0
96 TraesCS5B01G124200 chr4D 97.674 129 3 0 1735 1863 72840818 72840690 9.490000e-54 222.0
97 TraesCS5B01G124200 chr4D 96.947 131 4 0 1735 1865 674262 674132 3.410000e-53 220.0
98 TraesCS5B01G124200 chr4D 94.964 139 6 1 1735 1873 505937197 505937334 4.410000e-52 217.0
99 TraesCS5B01G124200 chr4D 98.077 104 2 0 5316 5419 54799345 54799448 1.610000e-41 182.0
100 TraesCS5B01G124200 chr4D 91.667 48 4 0 1860 1907 50640366 50640319 4.700000e-07 67.6
101 TraesCS5B01G124200 chr2D 86.997 746 55 23 6559 7266 1688203 1687462 0.000000e+00 802.0
102 TraesCS5B01G124200 chr2D 88.107 412 39 7 14 421 323025772 323026177 1.420000e-131 481.0
103 TraesCS5B01G124200 chr2D 86.616 396 47 4 3772 4162 380416637 380417031 4.030000e-117 433.0
104 TraesCS5B01G124200 chr2D 85.922 412 48 7 14 421 142418643 142419048 1.450000e-116 431.0
105 TraesCS5B01G124200 chr2D 85.203 419 51 8 3750 4160 117838863 117838448 3.130000e-113 420.0
106 TraesCS5B01G124200 chr2D 99.237 131 1 0 1732 1862 445188591 445188721 3.390000e-58 237.0
107 TraesCS5B01G124200 chr2D 83.654 104 5 6 1867 1963 304653878 304653780 3.610000e-13 87.9
108 TraesCS5B01G124200 chr7B 86.505 741 62 20 6562 7266 571636060 571635322 0.000000e+00 780.0
109 TraesCS5B01G124200 chr7B 89.329 328 29 5 4802 5129 531652028 531652349 2.440000e-109 407.0
110 TraesCS5B01G124200 chr7B 98.519 135 2 0 1735 1869 489146900 489146766 9.420000e-59 239.0
111 TraesCS5B01G124200 chr6D 85.250 739 62 19 6560 7266 60387895 60387172 0.000000e+00 717.0
112 TraesCS5B01G124200 chr6D 88.983 236 19 5 14 244 276990531 276990764 1.190000e-72 285.0
113 TraesCS5B01G124200 chr6D 97.015 134 4 0 1735 1868 2680720 2680587 7.330000e-55 226.0
114 TraesCS5B01G124200 chr6D 98.438 128 2 0 1734 1861 469942584 469942711 7.330000e-55 226.0
115 TraesCS5B01G124200 chr6D 97.710 131 2 1 1735 1865 303203975 303203846 2.640000e-54 224.0
116 TraesCS5B01G124200 chr6D 97.674 129 3 0 1732 1860 171639494 171639622 9.490000e-54 222.0
117 TraesCS5B01G124200 chr6D 73.789 351 59 24 1861 2192 1797792 1798128 2.770000e-19 108.0
118 TraesCS5B01G124200 chrUn 83.784 740 62 26 6561 7266 117088312 117087597 0.000000e+00 649.0
119 TraesCS5B01G124200 chrUn 86.978 407 43 5 19 421 364057444 364057044 4.000000e-122 449.0
120 TraesCS5B01G124200 chrUn 99.248 133 1 0 1730 1862 322720405 322720537 2.620000e-59 241.0
121 TraesCS5B01G124200 chrUn 98.425 127 2 0 1735 1861 52994438 52994564 2.640000e-54 224.0
122 TraesCS5B01G124200 chrUn 97.656 128 3 0 1735 1862 339593967 339593840 3.410000e-53 220.0
123 TraesCS5B01G124200 chrUn 97.638 127 3 0 1735 1861 16890326 16890452 1.230000e-52 219.0
124 TraesCS5B01G124200 chrUn 97.638 127 3 0 1735 1861 191163308 191163434 1.230000e-52 219.0
125 TraesCS5B01G124200 chrUn 95.588 136 6 0 1735 1870 263456365 263456500 1.230000e-52 219.0
126 TraesCS5B01G124200 chrUn 96.923 130 3 1 1732 1861 23715141 23715013 4.410000e-52 217.0
127 TraesCS5B01G124200 chrUn 97.619 126 3 0 1735 1860 36530677 36530802 4.410000e-52 217.0
128 TraesCS5B01G124200 chrUn 96.899 129 4 0 1735 1863 46159838 46159710 4.410000e-52 217.0
129 TraesCS5B01G124200 chrUn 95.556 135 4 2 1727 1861 17025253 17025385 1.590000e-51 215.0
130 TraesCS5B01G124200 chrUn 95.556 135 4 2 1727 1861 17027486 17027618 1.590000e-51 215.0
131 TraesCS5B01G124200 chrUn 96.875 128 4 0 1734 1861 292131188 292131061 1.590000e-51 215.0
132 TraesCS5B01G124200 chrUn 96.875 128 4 0 1734 1861 302852258 302852131 1.590000e-51 215.0
133 TraesCS5B01G124200 chrUn 95.556 135 4 2 1727 1861 302859292 302859424 1.590000e-51 215.0
134 TraesCS5B01G124200 chrUn 93.056 144 9 1 1734 1877 404803918 404804060 7.390000e-50 209.0
135 TraesCS5B01G124200 chr7A 86.063 574 69 8 4247 4812 432350801 432351371 2.240000e-169 606.0
136 TraesCS5B01G124200 chr3A 86.744 430 42 9 1 423 156797070 156797491 1.430000e-126 464.0
137 TraesCS5B01G124200 chr3A 86.181 398 45 6 3772 4162 83241648 83242042 8.720000e-114 422.0
138 TraesCS5B01G124200 chr1A 86.480 429 43 9 1 422 307426929 307426509 2.390000e-124 457.0
139 TraesCS5B01G124200 chr1A 85.504 407 49 8 19 421 403341327 403341727 4.050000e-112 416.0
140 TraesCS5B01G124200 chr1A 89.329 328 29 1 4802 5129 226157115 226156794 2.440000e-109 407.0
141 TraesCS5B01G124200 chr1A 98.519 135 2 0 1735 1869 497228281 497228147 9.420000e-59 239.0
142 TraesCS5B01G124200 chr1A 97.761 134 3 0 1731 1864 24134423 24134556 1.580000e-56 231.0
143 TraesCS5B01G124200 chr1A 99.219 128 1 0 1735 1862 505092519 505092392 1.580000e-56 231.0
144 TraesCS5B01G124200 chr1A 99.219 128 1 0 1735 1862 574666552 574666425 1.580000e-56 231.0
145 TraesCS5B01G124200 chr1A 91.765 85 6 1 4162 4246 564307705 564307622 4.610000e-22 117.0
146 TraesCS5B01G124200 chr7D 89.634 328 28 4 4802 5129 263323538 263323217 5.250000e-111 412.0
147 TraesCS5B01G124200 chr7D 94.483 145 8 0 1733 1877 497972392 497972536 2.640000e-54 224.0
148 TraesCS5B01G124200 chr7D 97.143 105 3 0 5315 5419 269373323 269373427 2.080000e-40 178.0
149 TraesCS5B01G124200 chr7D 95.455 44 1 1 4770 4812 33539832 33539875 1.310000e-07 69.4
150 TraesCS5B01G124200 chr2A 89.634 328 28 4 4802 5129 101856163 101856484 5.250000e-111 412.0
151 TraesCS5B01G124200 chr2A 89.535 86 9 0 4161 4246 710461803 710461888 7.710000e-20 110.0
152 TraesCS5B01G124200 chr2A 84.507 71 9 2 1861 1931 382811467 382811399 1.310000e-07 69.4
153 TraesCS5B01G124200 chr6A 89.058 329 30 2 4802 5130 178520555 178520877 3.160000e-108 403.0
154 TraesCS5B01G124200 chr6A 99.231 130 1 0 1734 1863 286338714 286338843 1.220000e-57 235.0
155 TraesCS5B01G124200 chr2B 83.747 443 39 17 6557 6967 767180671 767181112 8.840000e-104 388.0
156 TraesCS5B01G124200 chr2B 100.000 130 0 0 1732 1861 517436880 517437009 2.620000e-59 241.0
157 TraesCS5B01G124200 chr2B 96.503 143 2 3 1725 1865 578606513 578606372 4.380000e-57 233.0
158 TraesCS5B01G124200 chr2B 97.143 105 3 0 5316 5420 774087850 774087954 2.080000e-40 178.0
159 TraesCS5B01G124200 chr2B 80.916 131 14 5 1867 1991 373306658 373306533 7.760000e-15 93.5
160 TraesCS5B01G124200 chr3D 100.000 127 0 0 1735 1861 67064911 67064785 1.220000e-57 235.0
161 TraesCS5B01G124200 chr3D 99.231 130 1 0 1733 1862 448736471 448736600 1.220000e-57 235.0
162 TraesCS5B01G124200 chr3D 94.595 111 6 0 5309 5419 293614357 293614247 9.690000e-39 172.0
163 TraesCS5B01G124200 chr3D 75.414 362 75 11 1860 2216 418227924 418228276 5.830000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G124200 chr5B 224320131 224327396 7265 True 6424.500000 6573 100.000000 1 7266 2 chr5B.!!$R5 7265
1 TraesCS5B01G124200 chr5B 95126343 95127073 730 True 845.000000 845 88.195000 6561 7266 1 chr5B.!!$R1 705
2 TraesCS5B01G124200 chr5B 391230708 391231280 572 True 597.000000 597 85.714000 4247 4812 1 chr5B.!!$R3 565
3 TraesCS5B01G124200 chr5D 210676270 210682214 5944 True 1541.666667 2634 96.291333 422 6538 6 chr5D.!!$R5 6116
4 TraesCS5B01G124200 chr5A 272946176 272953242 7066 True 1223.571429 2093 92.784429 422 6764 7 chr5A.!!$R7 6342
5 TraesCS5B01G124200 chr5A 9842150 9842712 562 True 584.000000 584 85.589000 4247 4807 1 chr5A.!!$R1 560
6 TraesCS5B01G124200 chr6B 620620362 620621098 736 False 856.000000 856 88.363000 6561 7266 1 chr6B.!!$F3 705
7 TraesCS5B01G124200 chr1B 687136376 687137112 736 False 852.000000 852 88.227000 6560 7266 1 chr1B.!!$F3 706
8 TraesCS5B01G124200 chr1B 4008271 4008941 670 True 604.000000 604 83.644000 6560 7227 1 chr1B.!!$R1 667
9 TraesCS5B01G124200 chr1B 325264708 325268046 3338 True 414.500000 418 85.788000 3772 4165 2 chr1B.!!$R5 393
10 TraesCS5B01G124200 chr3B 829354861 829355595 734 True 848.000000 848 88.211000 6561 7266 1 chr3B.!!$R3 705
11 TraesCS5B01G124200 chr3B 784932678 784933248 570 False 573.000000 573 85.017000 4247 4812 1 chr3B.!!$F1 565
12 TraesCS5B01G124200 chr1D 493976257 493977000 743 True 841.000000 841 87.785000 6555 7266 1 chr1D.!!$R5 711
13 TraesCS5B01G124200 chr4A 739719468 739720196 728 False 824.000000 824 87.755000 6563 7266 1 chr4A.!!$F2 703
14 TraesCS5B01G124200 chr4A 742114675 742115405 730 False 811.000000 811 87.381000 6561 7266 1 chr4A.!!$F3 705
15 TraesCS5B01G124200 chr4A 533012801 533013365 564 False 601.000000 601 86.014000 4247 4812 1 chr4A.!!$F1 565
16 TraesCS5B01G124200 chr4B 460744285 460745015 730 True 819.000000 819 87.722000 6571 7266 1 chr4B.!!$R3 695
17 TraesCS5B01G124200 chr4B 560046164 560046905 741 True 819.000000 819 87.366000 6558 7266 1 chr4B.!!$R5 708
18 TraesCS5B01G124200 chr4B 260049954 260050525 571 False 604.000000 604 85.913000 4245 4812 1 chr4B.!!$F2 567
19 TraesCS5B01G124200 chr4D 488667392 488668131 739 False 815.000000 815 87.332000 6560 7266 1 chr4D.!!$F5 706
20 TraesCS5B01G124200 chr4D 392737173 392737733 560 True 580.000000 580 85.515000 4247 4812 1 chr4D.!!$R6 565
21 TraesCS5B01G124200 chr2D 1687462 1688203 741 True 802.000000 802 86.997000 6559 7266 1 chr2D.!!$R1 707
22 TraesCS5B01G124200 chr7B 571635322 571636060 738 True 780.000000 780 86.505000 6562 7266 1 chr7B.!!$R2 704
23 TraesCS5B01G124200 chr6D 60387172 60387895 723 True 717.000000 717 85.250000 6560 7266 1 chr6D.!!$R2 706
24 TraesCS5B01G124200 chrUn 117087597 117088312 715 True 649.000000 649 83.784000 6561 7266 1 chrUn.!!$R3 705
25 TraesCS5B01G124200 chrUn 17025253 17027618 2365 False 215.000000 215 95.556000 1727 1861 2 chrUn.!!$F9 134
26 TraesCS5B01G124200 chr7A 432350801 432351371 570 False 606.000000 606 86.063000 4247 4812 1 chr7A.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 565 0.034896 CGTGCCCTTGGTACTTGAGT 59.965 55.000 0.00 0.00 36.17 3.41 F
1861 3294 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12 F
2252 3686 0.459585 AACTGAACGTGTCACAGCGT 60.460 50.000 3.42 0.31 43.64 5.07 F
2994 4606 2.236146 TGATAGCTCCGAGGCTTGAAAA 59.764 45.455 2.43 0.00 42.97 2.29 F
4279 5932 0.250038 TGGCACTCTCTTGTCACAGC 60.250 55.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 3669 1.145759 ACACGCTGTGACACGTTCAG 61.146 55.000 14.18 3.72 41.32 3.02 R
3734 5350 1.188863 GGGTTAGCCTACCGACTTGA 58.811 55.000 0.00 0.00 39.18 3.02 R
3908 5557 1.377856 GGCCTCCAGAAACTCCAGC 60.378 63.158 0.00 0.00 0.00 4.85 R
4546 6203 2.167900 AGTAAATGGTAGTCGGACAGGC 59.832 50.000 11.27 0.00 0.00 4.85 R
6265 8320 0.121402 AGGGCCCTAGTTTTCCTCCT 59.879 55.000 27.42 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.698836 AATGTGTGACTTTAATGCTTTCAAC 57.301 32.000 0.00 0.00 0.00 3.18
25 26 6.201226 TGTGTGACTTTAATGCTTTCAACA 57.799 33.333 0.00 0.00 0.00 3.33
26 27 6.804677 TGTGTGACTTTAATGCTTTCAACAT 58.195 32.000 0.00 0.00 0.00 2.71
27 28 7.935520 TGTGTGACTTTAATGCTTTCAACATA 58.064 30.769 0.00 0.00 0.00 2.29
28 29 8.409371 TGTGTGACTTTAATGCTTTCAACATAA 58.591 29.630 0.00 0.00 0.00 1.90
29 30 8.690840 GTGTGACTTTAATGCTTTCAACATAAC 58.309 33.333 0.00 0.00 0.00 1.89
30 31 8.409371 TGTGACTTTAATGCTTTCAACATAACA 58.591 29.630 0.00 0.00 0.00 2.41
31 32 8.690840 GTGACTTTAATGCTTTCAACATAACAC 58.309 33.333 0.00 0.00 0.00 3.32
32 33 8.629158 TGACTTTAATGCTTTCAACATAACACT 58.371 29.630 0.00 0.00 0.00 3.55
33 34 9.463443 GACTTTAATGCTTTCAACATAACACTT 57.537 29.630 0.00 0.00 0.00 3.16
34 35 9.816354 ACTTTAATGCTTTCAACATAACACTTT 57.184 25.926 0.00 0.00 0.00 2.66
41 42 9.677567 TGCTTTCAACATAACACTTTTAGATTC 57.322 29.630 0.00 0.00 0.00 2.52
42 43 9.129209 GCTTTCAACATAACACTTTTAGATTCC 57.871 33.333 0.00 0.00 0.00 3.01
85 86 8.677148 AAGAAGCTATTAAGGAAATATTCGCA 57.323 30.769 0.00 0.00 29.81 5.10
86 87 8.677148 AGAAGCTATTAAGGAAATATTCGCAA 57.323 30.769 0.00 0.00 29.81 4.85
87 88 9.120538 AGAAGCTATTAAGGAAATATTCGCAAA 57.879 29.630 0.00 0.00 29.81 3.68
88 89 9.730420 GAAGCTATTAAGGAAATATTCGCAAAA 57.270 29.630 0.00 0.00 29.63 2.44
90 91 9.899226 AGCTATTAAGGAAATATTCGCAAAATC 57.101 29.630 0.00 0.00 29.63 2.17
91 92 9.129209 GCTATTAAGGAAATATTCGCAAAATCC 57.871 33.333 0.00 0.00 29.63 3.01
96 97 7.881775 AGGAAATATTCGCAAAATCCTTACT 57.118 32.000 0.00 0.00 31.99 2.24
97 98 7.931275 AGGAAATATTCGCAAAATCCTTACTC 58.069 34.615 0.00 0.00 31.99 2.59
98 99 7.775561 AGGAAATATTCGCAAAATCCTTACTCT 59.224 33.333 0.00 0.00 31.99 3.24
99 100 7.857885 GGAAATATTCGCAAAATCCTTACTCTG 59.142 37.037 0.00 0.00 0.00 3.35
100 101 7.865706 AATATTCGCAAAATCCTTACTCTGT 57.134 32.000 0.00 0.00 0.00 3.41
101 102 5.551760 ATTCGCAAAATCCTTACTCTGTG 57.448 39.130 0.00 0.00 0.00 3.66
102 103 4.265904 TCGCAAAATCCTTACTCTGTGA 57.734 40.909 0.00 0.00 0.00 3.58
103 104 4.832248 TCGCAAAATCCTTACTCTGTGAT 58.168 39.130 0.00 0.00 0.00 3.06
104 105 5.245531 TCGCAAAATCCTTACTCTGTGATT 58.754 37.500 0.00 0.00 0.00 2.57
105 106 6.403049 TCGCAAAATCCTTACTCTGTGATTA 58.597 36.000 0.00 0.00 0.00 1.75
106 107 6.876789 TCGCAAAATCCTTACTCTGTGATTAA 59.123 34.615 0.00 0.00 0.00 1.40
107 108 7.389330 TCGCAAAATCCTTACTCTGTGATTAAA 59.611 33.333 0.00 0.00 0.00 1.52
108 109 8.020819 CGCAAAATCCTTACTCTGTGATTAAAA 58.979 33.333 0.00 0.00 0.00 1.52
109 110 9.691362 GCAAAATCCTTACTCTGTGATTAAAAA 57.309 29.630 0.00 0.00 0.00 1.94
116 117 9.755064 CCTTACTCTGTGATTAAAAACAATACG 57.245 33.333 0.00 0.00 0.00 3.06
146 147 8.692110 ATATGCATTTTGTATGAAACACTGTG 57.308 30.769 3.54 6.19 38.00 3.66
147 148 4.744137 TGCATTTTGTATGAAACACTGTGC 59.256 37.500 7.90 0.00 38.00 4.57
148 149 4.744137 GCATTTTGTATGAAACACTGTGCA 59.256 37.500 7.90 0.00 38.00 4.57
149 150 5.406175 GCATTTTGTATGAAACACTGTGCAT 59.594 36.000 7.90 6.19 38.00 3.96
150 151 6.616893 GCATTTTGTATGAAACACTGTGCATG 60.617 38.462 7.90 0.00 38.00 4.06
151 152 5.764487 TTTGTATGAAACACTGTGCATGA 57.236 34.783 7.90 0.00 38.00 3.07
152 153 4.747540 TGTATGAAACACTGTGCATGAC 57.252 40.909 7.90 0.00 31.43 3.06
153 154 4.388485 TGTATGAAACACTGTGCATGACT 58.612 39.130 7.90 0.00 31.43 3.41
154 155 4.821260 TGTATGAAACACTGTGCATGACTT 59.179 37.500 7.90 0.00 31.43 3.01
155 156 4.924305 ATGAAACACTGTGCATGACTTT 57.076 36.364 7.90 0.00 0.00 2.66
156 157 4.031418 TGAAACACTGTGCATGACTTTG 57.969 40.909 7.90 0.00 0.00 2.77
157 158 3.693578 TGAAACACTGTGCATGACTTTGA 59.306 39.130 7.90 0.00 0.00 2.69
158 159 4.338964 TGAAACACTGTGCATGACTTTGAT 59.661 37.500 7.90 0.00 0.00 2.57
159 160 5.530543 TGAAACACTGTGCATGACTTTGATA 59.469 36.000 7.90 0.00 0.00 2.15
160 161 6.039159 TGAAACACTGTGCATGACTTTGATAA 59.961 34.615 7.90 0.00 0.00 1.75
161 162 5.362556 ACACTGTGCATGACTTTGATAAC 57.637 39.130 7.90 0.00 0.00 1.89
162 163 4.821260 ACACTGTGCATGACTTTGATAACA 59.179 37.500 7.90 0.00 0.00 2.41
163 164 5.474532 ACACTGTGCATGACTTTGATAACAT 59.525 36.000 7.90 0.00 0.00 2.71
164 165 6.654582 ACACTGTGCATGACTTTGATAACATA 59.345 34.615 7.90 0.00 0.00 2.29
165 166 7.337689 ACACTGTGCATGACTTTGATAACATAT 59.662 33.333 7.90 0.00 0.00 1.78
166 167 8.829612 CACTGTGCATGACTTTGATAACATATA 58.170 33.333 0.00 0.00 0.00 0.86
167 168 9.394767 ACTGTGCATGACTTTGATAACATATAA 57.605 29.630 0.00 0.00 0.00 0.98
189 190 8.757982 ATAATGAAGTTCTAAATGCATGACCT 57.242 30.769 0.00 0.00 0.00 3.85
190 191 7.472334 AATGAAGTTCTAAATGCATGACCTT 57.528 32.000 0.00 0.00 0.00 3.50
191 192 8.579850 AATGAAGTTCTAAATGCATGACCTTA 57.420 30.769 0.00 0.00 0.00 2.69
192 193 8.757982 ATGAAGTTCTAAATGCATGACCTTAT 57.242 30.769 0.00 0.00 0.00 1.73
193 194 8.579850 TGAAGTTCTAAATGCATGACCTTATT 57.420 30.769 0.00 0.00 0.00 1.40
194 195 9.023962 TGAAGTTCTAAATGCATGACCTTATTT 57.976 29.630 0.00 0.00 0.00 1.40
195 196 9.508567 GAAGTTCTAAATGCATGACCTTATTTC 57.491 33.333 0.00 0.00 0.00 2.17
196 197 8.579850 AGTTCTAAATGCATGACCTTATTTCA 57.420 30.769 0.00 0.00 0.00 2.69
197 198 8.462016 AGTTCTAAATGCATGACCTTATTTCAC 58.538 33.333 0.00 0.00 0.00 3.18
198 199 8.462016 GTTCTAAATGCATGACCTTATTTCACT 58.538 33.333 0.00 0.00 0.00 3.41
199 200 7.988737 TCTAAATGCATGACCTTATTTCACTG 58.011 34.615 0.00 0.00 0.00 3.66
200 201 4.644103 ATGCATGACCTTATTTCACTGC 57.356 40.909 0.00 0.00 32.60 4.40
201 202 3.689347 TGCATGACCTTATTTCACTGCT 58.311 40.909 0.00 0.00 32.90 4.24
202 203 4.081406 TGCATGACCTTATTTCACTGCTT 58.919 39.130 0.00 0.00 32.90 3.91
203 204 4.523943 TGCATGACCTTATTTCACTGCTTT 59.476 37.500 0.00 0.00 32.90 3.51
204 205 5.098211 GCATGACCTTATTTCACTGCTTTC 58.902 41.667 0.00 0.00 30.89 2.62
205 206 5.105997 GCATGACCTTATTTCACTGCTTTCT 60.106 40.000 0.00 0.00 30.89 2.52
206 207 6.094048 GCATGACCTTATTTCACTGCTTTCTA 59.906 38.462 0.00 0.00 30.89 2.10
207 208 7.362056 GCATGACCTTATTTCACTGCTTTCTAA 60.362 37.037 0.00 0.00 30.89 2.10
208 209 8.680903 CATGACCTTATTTCACTGCTTTCTAAT 58.319 33.333 0.00 0.00 0.00 1.73
209 210 9.905713 ATGACCTTATTTCACTGCTTTCTAATA 57.094 29.630 0.00 0.00 0.00 0.98
210 211 9.162764 TGACCTTATTTCACTGCTTTCTAATAC 57.837 33.333 0.00 0.00 0.00 1.89
211 212 9.162764 GACCTTATTTCACTGCTTTCTAATACA 57.837 33.333 0.00 0.00 0.00 2.29
212 213 9.167311 ACCTTATTTCACTGCTTTCTAATACAG 57.833 33.333 0.00 0.00 36.22 2.74
213 214 9.383519 CCTTATTTCACTGCTTTCTAATACAGA 57.616 33.333 0.00 0.00 34.25 3.41
218 219 8.621532 TTCACTGCTTTCTAATACAGAATTGT 57.378 30.769 0.00 0.00 42.88 2.71
219 220 8.621532 TCACTGCTTTCTAATACAGAATTGTT 57.378 30.769 0.00 0.00 42.88 2.83
220 221 8.506437 TCACTGCTTTCTAATACAGAATTGTTG 58.494 33.333 0.00 0.00 42.88 3.33
221 222 8.292448 CACTGCTTTCTAATACAGAATTGTTGT 58.708 33.333 0.00 0.00 42.88 3.32
222 223 8.507249 ACTGCTTTCTAATACAGAATTGTTGTC 58.493 33.333 0.00 0.00 42.88 3.18
223 224 8.389779 TGCTTTCTAATACAGAATTGTTGTCA 57.610 30.769 0.00 0.00 42.88 3.58
224 225 9.013229 TGCTTTCTAATACAGAATTGTTGTCAT 57.987 29.630 0.00 0.00 42.88 3.06
225 226 9.495754 GCTTTCTAATACAGAATTGTTGTCATC 57.504 33.333 0.00 0.00 42.88 2.92
229 230 9.516314 TCTAATACAGAATTGTTGTCATCTACG 57.484 33.333 0.00 0.00 38.76 3.51
230 231 9.302345 CTAATACAGAATTGTTGTCATCTACGT 57.698 33.333 0.00 0.00 38.76 3.57
232 233 9.817809 AATACAGAATTGTTGTCATCTACGTAT 57.182 29.630 0.00 0.00 38.76 3.06
233 234 7.757097 ACAGAATTGTTGTCATCTACGTATC 57.243 36.000 0.00 0.00 32.28 2.24
234 235 6.472486 ACAGAATTGTTGTCATCTACGTATCG 59.528 38.462 0.00 0.00 32.28 2.92
235 236 6.472486 CAGAATTGTTGTCATCTACGTATCGT 59.528 38.462 0.00 0.00 44.35 3.73
236 237 7.009265 CAGAATTGTTGTCATCTACGTATCGTT 59.991 37.037 0.00 0.00 41.54 3.85
237 238 6.807708 ATTGTTGTCATCTACGTATCGTTC 57.192 37.500 0.00 0.00 41.54 3.95
238 239 5.556355 TGTTGTCATCTACGTATCGTTCT 57.444 39.130 0.00 0.00 41.54 3.01
239 240 6.667007 TGTTGTCATCTACGTATCGTTCTA 57.333 37.500 0.00 0.00 41.54 2.10
240 241 7.255491 TGTTGTCATCTACGTATCGTTCTAT 57.745 36.000 0.00 0.00 41.54 1.98
241 242 8.369218 TGTTGTCATCTACGTATCGTTCTATA 57.631 34.615 0.00 0.00 41.54 1.31
242 243 8.996271 TGTTGTCATCTACGTATCGTTCTATAT 58.004 33.333 0.00 0.00 41.54 0.86
243 244 9.475505 GTTGTCATCTACGTATCGTTCTATATC 57.524 37.037 0.00 0.00 41.54 1.63
244 245 7.892803 TGTCATCTACGTATCGTTCTATATCG 58.107 38.462 0.00 0.00 41.54 2.92
245 246 7.009907 TGTCATCTACGTATCGTTCTATATCGG 59.990 40.741 0.00 0.00 41.54 4.18
246 247 7.009999 GTCATCTACGTATCGTTCTATATCGGT 59.990 40.741 0.00 0.00 41.54 4.69
247 248 6.638168 TCTACGTATCGTTCTATATCGGTG 57.362 41.667 0.00 0.00 41.54 4.94
248 249 4.675190 ACGTATCGTTCTATATCGGTGG 57.325 45.455 0.00 0.00 36.35 4.61
249 250 4.318332 ACGTATCGTTCTATATCGGTGGA 58.682 43.478 0.00 0.00 36.35 4.02
250 251 4.153117 ACGTATCGTTCTATATCGGTGGAC 59.847 45.833 0.00 0.00 36.35 4.02
251 252 4.152938 CGTATCGTTCTATATCGGTGGACA 59.847 45.833 0.00 0.00 0.00 4.02
252 253 5.163784 CGTATCGTTCTATATCGGTGGACAT 60.164 44.000 0.00 0.00 0.00 3.06
253 254 6.036408 CGTATCGTTCTATATCGGTGGACATA 59.964 42.308 0.00 0.00 0.00 2.29
254 255 7.254692 CGTATCGTTCTATATCGGTGGACATAT 60.255 40.741 0.00 0.00 0.00 1.78
255 256 6.432607 TCGTTCTATATCGGTGGACATATC 57.567 41.667 0.00 0.00 0.00 1.63
256 257 5.064325 TCGTTCTATATCGGTGGACATATCG 59.936 44.000 0.00 0.00 0.00 2.92
257 258 5.579718 GTTCTATATCGGTGGACATATCGG 58.420 45.833 0.00 0.00 0.00 4.18
258 259 4.204799 TCTATATCGGTGGACATATCGGG 58.795 47.826 0.00 0.00 0.00 5.14
259 260 0.892755 TATCGGTGGACATATCGGGC 59.107 55.000 0.00 0.00 0.00 6.13
260 261 0.832135 ATCGGTGGACATATCGGGCT 60.832 55.000 0.00 0.00 0.00 5.19
261 262 0.178984 TCGGTGGACATATCGGGCTA 60.179 55.000 0.00 0.00 0.00 3.93
262 263 0.243907 CGGTGGACATATCGGGCTAG 59.756 60.000 0.00 0.00 0.00 3.42
263 264 1.629043 GGTGGACATATCGGGCTAGA 58.371 55.000 0.00 0.00 0.00 2.43
264 265 2.180276 GGTGGACATATCGGGCTAGAT 58.820 52.381 0.00 2.10 34.79 1.98
265 266 3.362706 GGTGGACATATCGGGCTAGATA 58.637 50.000 0.00 5.88 37.49 1.98
266 267 3.961408 GGTGGACATATCGGGCTAGATAT 59.039 47.826 0.00 9.21 42.68 1.63
267 268 4.038162 GGTGGACATATCGGGCTAGATATC 59.962 50.000 11.23 0.00 40.68 1.63
268 269 3.883489 TGGACATATCGGGCTAGATATCG 59.117 47.826 11.23 10.03 40.68 2.92
269 270 3.253677 GGACATATCGGGCTAGATATCGG 59.746 52.174 11.23 0.00 40.68 4.18
270 271 3.884091 GACATATCGGGCTAGATATCGGT 59.116 47.826 11.23 8.61 40.68 4.69
271 272 3.884091 ACATATCGGGCTAGATATCGGTC 59.116 47.826 11.23 0.00 40.68 4.79
272 273 2.509166 ATCGGGCTAGATATCGGTCA 57.491 50.000 0.00 0.00 0.00 4.02
273 274 2.509166 TCGGGCTAGATATCGGTCAT 57.491 50.000 0.00 0.00 0.00 3.06
274 275 3.639672 TCGGGCTAGATATCGGTCATA 57.360 47.619 0.00 0.00 0.00 2.15
275 276 4.166246 TCGGGCTAGATATCGGTCATAT 57.834 45.455 0.00 0.00 0.00 1.78
276 277 4.135306 TCGGGCTAGATATCGGTCATATC 58.865 47.826 0.00 0.00 42.82 1.63
277 278 3.058846 CGGGCTAGATATCGGTCATATCG 60.059 52.174 0.00 0.00 45.90 2.92
278 279 3.253677 GGGCTAGATATCGGTCATATCGG 59.746 52.174 0.00 0.00 45.90 4.18
279 280 3.884091 GGCTAGATATCGGTCATATCGGT 59.116 47.826 0.00 0.00 45.90 4.69
280 281 4.023878 GGCTAGATATCGGTCATATCGGTC 60.024 50.000 0.00 0.00 45.90 4.79
281 282 4.318903 GCTAGATATCGGTCATATCGGTCG 60.319 50.000 0.00 0.00 45.90 4.79
282 283 3.870274 AGATATCGGTCATATCGGTCGA 58.130 45.455 0.00 0.00 45.90 4.20
283 284 4.452825 AGATATCGGTCATATCGGTCGAT 58.547 43.478 10.75 10.75 45.90 3.59
284 285 5.608449 AGATATCGGTCATATCGGTCGATA 58.392 41.667 14.28 14.28 45.90 2.92
285 286 5.466058 AGATATCGGTCATATCGGTCGATAC 59.534 44.000 14.22 5.85 45.90 2.24
286 287 3.049708 TCGGTCATATCGGTCGATACT 57.950 47.619 14.22 3.24 39.56 2.12
287 288 3.405831 TCGGTCATATCGGTCGATACTT 58.594 45.455 14.22 0.00 39.56 2.24
288 289 3.817084 TCGGTCATATCGGTCGATACTTT 59.183 43.478 14.22 0.00 39.56 2.66
289 290 3.912563 CGGTCATATCGGTCGATACTTTG 59.087 47.826 14.22 9.79 39.56 2.77
290 291 4.319984 CGGTCATATCGGTCGATACTTTGA 60.320 45.833 14.22 11.64 39.56 2.69
291 292 5.619309 CGGTCATATCGGTCGATACTTTGAT 60.619 44.000 14.22 0.00 39.56 2.57
292 293 5.800941 GGTCATATCGGTCGATACTTTGATC 59.199 44.000 14.22 11.14 39.56 2.92
293 294 5.800941 GTCATATCGGTCGATACTTTGATCC 59.199 44.000 14.22 2.63 39.56 3.36
294 295 5.475564 TCATATCGGTCGATACTTTGATCCA 59.524 40.000 14.22 0.00 39.56 3.41
295 296 4.873746 ATCGGTCGATACTTTGATCCAT 57.126 40.909 3.86 0.00 32.36 3.41
296 297 5.977489 ATCGGTCGATACTTTGATCCATA 57.023 39.130 3.86 0.00 32.36 2.74
297 298 5.977489 TCGGTCGATACTTTGATCCATAT 57.023 39.130 0.00 0.00 0.00 1.78
298 299 5.950883 TCGGTCGATACTTTGATCCATATC 58.049 41.667 0.00 0.00 0.00 1.63
299 300 4.793731 CGGTCGATACTTTGATCCATATCG 59.206 45.833 14.21 14.21 44.89 2.92
300 301 5.103000 GGTCGATACTTTGATCCATATCGG 58.897 45.833 17.63 6.64 44.09 4.18
357 358 9.908152 TGATATGTTATGTTTATGTCGGTAGAG 57.092 33.333 0.00 0.00 0.00 2.43
358 359 8.758633 ATATGTTATGTTTATGTCGGTAGAGC 57.241 34.615 0.00 0.00 0.00 4.09
359 360 6.216801 TGTTATGTTTATGTCGGTAGAGCT 57.783 37.500 0.00 0.00 0.00 4.09
360 361 6.636705 TGTTATGTTTATGTCGGTAGAGCTT 58.363 36.000 0.00 0.00 0.00 3.74
361 362 6.755141 TGTTATGTTTATGTCGGTAGAGCTTC 59.245 38.462 0.00 0.00 0.00 3.86
362 363 4.794278 TGTTTATGTCGGTAGAGCTTCA 57.206 40.909 0.00 0.00 0.00 3.02
363 364 5.142061 TGTTTATGTCGGTAGAGCTTCAA 57.858 39.130 0.00 0.00 0.00 2.69
364 365 5.543714 TGTTTATGTCGGTAGAGCTTCAAA 58.456 37.500 0.00 0.00 0.00 2.69
365 366 5.992829 TGTTTATGTCGGTAGAGCTTCAAAA 59.007 36.000 0.00 0.00 0.00 2.44
366 367 6.147164 TGTTTATGTCGGTAGAGCTTCAAAAG 59.853 38.462 0.00 0.00 0.00 2.27
367 368 3.746045 TGTCGGTAGAGCTTCAAAAGT 57.254 42.857 0.00 0.00 0.00 2.66
368 369 3.390135 TGTCGGTAGAGCTTCAAAAGTG 58.610 45.455 0.00 0.00 0.00 3.16
369 370 3.069016 TGTCGGTAGAGCTTCAAAAGTGA 59.931 43.478 0.00 0.00 0.00 3.41
370 371 4.246458 GTCGGTAGAGCTTCAAAAGTGAT 58.754 43.478 0.00 0.00 32.48 3.06
371 372 4.092091 GTCGGTAGAGCTTCAAAAGTGATG 59.908 45.833 0.00 0.00 32.48 3.07
372 373 3.997021 CGGTAGAGCTTCAAAAGTGATGT 59.003 43.478 0.00 0.00 32.48 3.06
373 374 5.047590 TCGGTAGAGCTTCAAAAGTGATGTA 60.048 40.000 0.00 0.00 32.48 2.29
374 375 5.812642 CGGTAGAGCTTCAAAAGTGATGTAT 59.187 40.000 0.00 0.00 32.48 2.29
375 376 6.019479 CGGTAGAGCTTCAAAAGTGATGTATC 60.019 42.308 0.00 0.00 32.48 2.24
376 377 6.019479 GGTAGAGCTTCAAAAGTGATGTATCG 60.019 42.308 0.00 0.00 32.48 2.92
377 378 4.872691 AGAGCTTCAAAAGTGATGTATCGG 59.127 41.667 0.00 0.00 32.48 4.18
378 379 4.579869 AGCTTCAAAAGTGATGTATCGGT 58.420 39.130 0.00 0.00 32.48 4.69
379 380 4.631813 AGCTTCAAAAGTGATGTATCGGTC 59.368 41.667 0.00 0.00 32.48 4.79
380 381 4.631813 GCTTCAAAAGTGATGTATCGGTCT 59.368 41.667 0.00 0.00 32.48 3.85
381 382 5.810587 GCTTCAAAAGTGATGTATCGGTCTA 59.189 40.000 0.00 0.00 32.48 2.59
382 383 6.480320 GCTTCAAAAGTGATGTATCGGTCTAT 59.520 38.462 0.00 0.00 32.48 1.98
383 384 7.652105 GCTTCAAAAGTGATGTATCGGTCTATA 59.348 37.037 0.00 0.00 32.48 1.31
384 385 9.698309 CTTCAAAAGTGATGTATCGGTCTATAT 57.302 33.333 0.00 0.00 32.48 0.86
417 418 8.383318 TGTCATATCAGCCTAGATTTAAAAGC 57.617 34.615 0.00 0.00 0.00 3.51
418 419 8.213679 TGTCATATCAGCCTAGATTTAAAAGCT 58.786 33.333 0.00 0.00 0.00 3.74
419 420 9.061435 GTCATATCAGCCTAGATTTAAAAGCTT 57.939 33.333 0.00 0.00 0.00 3.74
420 421 9.060347 TCATATCAGCCTAGATTTAAAAGCTTG 57.940 33.333 0.00 0.00 0.00 4.01
429 430 1.681538 TTAAAAGCTTGACCCACGCA 58.318 45.000 0.00 0.00 30.84 5.24
464 465 1.751924 AGTTCACCGGCAGAGAGTATC 59.248 52.381 0.00 0.00 0.00 2.24
468 469 2.196925 CCGGCAGAGAGTATCGCCT 61.197 63.158 15.30 0.00 42.12 5.52
471 472 1.365633 GCAGAGAGTATCGCCTGGG 59.634 63.158 0.00 0.00 42.67 4.45
563 564 0.673644 CCGTGCCCTTGGTACTTGAG 60.674 60.000 0.00 0.00 36.17 3.02
564 565 0.034896 CGTGCCCTTGGTACTTGAGT 59.965 55.000 0.00 0.00 36.17 3.41
565 566 1.274167 CGTGCCCTTGGTACTTGAGTA 59.726 52.381 0.00 0.00 36.17 2.59
694 2121 2.203788 ACCCTCTTCCACCTCGCA 60.204 61.111 0.00 0.00 0.00 5.10
714 2141 1.003355 CCACACTTGTGCTCCCGAT 60.003 57.895 3.68 0.00 44.34 4.18
746 2173 0.260230 CAGCTCCCTGGACTCTCCTA 59.740 60.000 0.00 0.00 37.46 2.94
749 2176 1.394618 CTCCCTGGACTCTCCTAACG 58.605 60.000 0.00 0.00 37.46 3.18
809 2236 2.280797 TTCAGGCTGCGCGAACTT 60.281 55.556 12.10 0.00 0.00 2.66
922 2349 3.247411 CGAGCTCAAACATACACACACAA 59.753 43.478 15.40 0.00 0.00 3.33
925 2352 4.397730 AGCTCAAACATACACACACAAACA 59.602 37.500 0.00 0.00 0.00 2.83
926 2353 5.067674 AGCTCAAACATACACACACAAACAT 59.932 36.000 0.00 0.00 0.00 2.71
1660 3093 3.818180 ACTATCGTTAGGTCATCCGAGT 58.182 45.455 5.55 0.00 39.05 4.18
1677 3110 2.089980 GAGTGAATGCTGCAACCTGAT 58.910 47.619 6.36 0.00 0.00 2.90
1727 3160 2.351726 CGAAAGAGGATTGCCGGTAAAG 59.648 50.000 9.67 0.00 39.96 1.85
1770 3203 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
1772 3205 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
1861 3294 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
1905 3339 8.907222 AAGATTTGCCATGTTGTAAAGAAAAT 57.093 26.923 0.00 0.00 0.00 1.82
1944 3378 5.583457 GCAGAAAGATTAATTTGCCATGCTT 59.417 36.000 0.00 0.00 0.00 3.91
1945 3379 6.093082 GCAGAAAGATTAATTTGCCATGCTTT 59.907 34.615 0.00 0.00 0.00 3.51
2235 3669 4.143094 GCTTTGAGATTCGTACACAGGAAC 60.143 45.833 0.00 0.00 31.74 3.62
2252 3686 0.459585 AACTGAACGTGTCACAGCGT 60.460 50.000 3.42 0.31 43.64 5.07
2407 4018 6.296087 GGATATCTGGATGATAGTTGCAAGGA 60.296 42.308 0.00 0.00 40.58 3.36
2504 4115 6.480763 TCTGGATGATAGTTGCAAGGTTTAA 58.519 36.000 0.00 0.00 0.00 1.52
2510 4121 5.475564 TGATAGTTGCAAGGTTTAAGGGTTC 59.524 40.000 0.00 0.00 0.00 3.62
2515 4126 3.071312 TGCAAGGTTTAAGGGTTCGTCTA 59.929 43.478 0.00 0.00 0.00 2.59
2640 4251 3.647113 AGTATACCGGTGAGCTAGAGAGA 59.353 47.826 19.93 0.00 0.00 3.10
2994 4606 2.236146 TGATAGCTCCGAGGCTTGAAAA 59.764 45.455 2.43 0.00 42.97 2.29
3103 4715 6.603237 TGTGTGACAGTGTGAAGAATTTAG 57.397 37.500 0.00 0.00 0.00 1.85
3144 4756 3.975670 GTCACGGACTAGCTTTATCATCG 59.024 47.826 0.00 0.00 0.00 3.84
3193 4808 8.469902 GTGATATTACATCGAGAACAGTTTACG 58.530 37.037 0.00 6.70 0.00 3.18
3316 4932 5.976458 AGAGCCAAAGTTTTGTTGATGAAA 58.024 33.333 4.12 0.00 36.45 2.69
3731 5347 5.391629 CGACAACAATAAAGCCTTTAGTCCC 60.392 44.000 2.98 0.00 0.00 4.46
3734 5350 6.496911 ACAACAATAAAGCCTTTAGTCCCAAT 59.503 34.615 2.98 0.00 0.00 3.16
3797 5445 3.136763 CACTCCTATGCATGGCTAGTTG 58.863 50.000 10.16 4.62 0.00 3.16
3835 5483 5.420409 GGTCCTTCAGATCATTCTTTACGT 58.580 41.667 0.00 0.00 0.00 3.57
3874 5523 2.537143 TGGTCTACCCCAACTTCTCTC 58.463 52.381 0.00 0.00 34.29 3.20
3931 5580 2.032681 GTTTCTGGAGGCCTGCGT 59.967 61.111 20.39 0.00 0.00 5.24
4082 5734 3.002348 GCACATTTCCGCTACATCTAACC 59.998 47.826 0.00 0.00 0.00 2.85
4130 5782 1.372997 CACTCAGCGCCGTACAACT 60.373 57.895 2.29 0.00 0.00 3.16
4136 5788 0.320073 AGCGCCGTACAACTTTGCTA 60.320 50.000 2.29 0.00 0.00 3.49
4279 5932 0.250038 TGGCACTCTCTTGTCACAGC 60.250 55.000 0.00 0.00 0.00 4.40
4544 6200 9.308318 GTCTCCAAAGCTCTAACTTTCTATTAG 57.692 37.037 0.00 0.00 37.78 1.73
4546 6203 6.757010 TCCAAAGCTCTAACTTTCTATTAGCG 59.243 38.462 0.00 0.00 37.78 4.26
4549 6206 4.342665 AGCTCTAACTTTCTATTAGCGCCT 59.657 41.667 2.29 0.00 39.92 5.52
4559 6216 0.384669 ATTAGCGCCTGTCCGACTAC 59.615 55.000 2.29 0.00 0.00 2.73
4654 6389 6.454795 TCCATCACCAAAGCAAAAAGATAAC 58.545 36.000 0.00 0.00 0.00 1.89
4894 6929 4.015084 CCATTCTTCTGGCATCTTGTTCT 58.985 43.478 0.00 0.00 0.00 3.01
4897 6932 2.909006 TCTTCTGGCATCTTGTTCTCCT 59.091 45.455 0.00 0.00 0.00 3.69
4916 6951 7.601705 TCTCCTGAAAAATGAGGTTGAAAAT 57.398 32.000 0.00 0.00 0.00 1.82
5043 7078 3.158676 AGCGTTCTTGACCTTAGACTCT 58.841 45.455 0.00 0.00 0.00 3.24
5065 7100 1.003331 GGATTCGTCGCACAAAACACA 60.003 47.619 0.00 0.00 0.00 3.72
5079 7114 4.949856 ACAAAACACATGAGGGTATCATCC 59.050 41.667 0.00 0.00 46.01 3.51
5101 7136 0.532573 GGAGTCGTCCAGCTCAATGA 59.467 55.000 0.00 0.00 43.31 2.57
5177 7212 3.132925 CAACCATCAAACAAAGGCCAAG 58.867 45.455 5.01 0.00 0.00 3.61
5274 7309 2.851263 ACTATTCACGTGCCTTTGGA 57.149 45.000 11.67 0.00 0.00 3.53
5325 7360 8.890410 TGGTAAGACCTCTGTTAACTATTACT 57.110 34.615 7.22 0.00 39.58 2.24
5326 7361 8.964772 TGGTAAGACCTCTGTTAACTATTACTC 58.035 37.037 7.22 0.75 39.58 2.59
5327 7362 8.412456 GGTAAGACCTCTGTTAACTATTACTCC 58.588 40.741 7.22 0.00 34.73 3.85
5328 7363 7.421087 AAGACCTCTGTTAACTATTACTCCC 57.579 40.000 7.22 0.00 0.00 4.30
5329 7364 6.743788 AGACCTCTGTTAACTATTACTCCCT 58.256 40.000 7.22 0.00 0.00 4.20
5330 7365 6.834969 AGACCTCTGTTAACTATTACTCCCTC 59.165 42.308 7.22 0.00 0.00 4.30
5331 7366 6.743788 ACCTCTGTTAACTATTACTCCCTCT 58.256 40.000 7.22 0.00 0.00 3.69
5332 7367 6.608002 ACCTCTGTTAACTATTACTCCCTCTG 59.392 42.308 7.22 0.00 0.00 3.35
5333 7368 6.608002 CCTCTGTTAACTATTACTCCCTCTGT 59.392 42.308 7.22 0.00 0.00 3.41
5334 7369 7.201839 CCTCTGTTAACTATTACTCCCTCTGTC 60.202 44.444 7.22 0.00 0.00 3.51
5335 7370 6.606395 TCTGTTAACTATTACTCCCTCTGTCC 59.394 42.308 7.22 0.00 0.00 4.02
5336 7371 5.659971 TGTTAACTATTACTCCCTCTGTCCC 59.340 44.000 7.22 0.00 0.00 4.46
5337 7372 4.348020 AACTATTACTCCCTCTGTCCCA 57.652 45.455 0.00 0.00 0.00 4.37
5338 7373 4.348020 ACTATTACTCCCTCTGTCCCAA 57.652 45.455 0.00 0.00 0.00 4.12
5339 7374 4.695606 ACTATTACTCCCTCTGTCCCAAA 58.304 43.478 0.00 0.00 0.00 3.28
5340 7375 5.098663 ACTATTACTCCCTCTGTCCCAAAA 58.901 41.667 0.00 0.00 0.00 2.44
5341 7376 5.731678 ACTATTACTCCCTCTGTCCCAAAAT 59.268 40.000 0.00 0.00 0.00 1.82
5342 7377 6.906901 ACTATTACTCCCTCTGTCCCAAAATA 59.093 38.462 0.00 0.00 0.00 1.40
5343 7378 6.652205 ATTACTCCCTCTGTCCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
5344 7379 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
5345 7380 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
5346 7381 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
5347 7382 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
5348 7383 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
5349 7384 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
5350 7385 5.316987 CCTCTGTCCCAAAATAAGTGTCTT 58.683 41.667 0.00 0.00 0.00 3.01
5351 7386 5.182001 CCTCTGTCCCAAAATAAGTGTCTTG 59.818 44.000 0.00 0.00 0.00 3.02
5352 7387 5.935945 TCTGTCCCAAAATAAGTGTCTTGA 58.064 37.500 0.00 0.00 0.00 3.02
5353 7388 5.997746 TCTGTCCCAAAATAAGTGTCTTGAG 59.002 40.000 0.00 0.00 0.00 3.02
5354 7389 4.518970 TGTCCCAAAATAAGTGTCTTGAGC 59.481 41.667 0.00 0.00 0.00 4.26
5355 7390 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
5356 7391 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
5357 7392 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
5358 7393 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
5359 7394 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
5360 7395 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
5361 7396 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
5362 7397 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
5363 7398 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
5364 7399 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
5365 7400 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
5366 7401 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
5367 7402 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
5368 7403 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
5369 7404 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
5370 7405 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
5394 7429 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
5395 7430 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
5396 7431 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
5397 7432 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
5398 7433 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
5399 7434 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
5400 7435 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
5401 7436 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
5402 7437 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
5405 7440 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
5406 7441 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
5407 7442 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
5408 7443 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
5409 7444 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
5410 7445 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5411 7446 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5412 7447 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5413 7448 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5414 7449 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5415 7450 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5416 7451 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5445 7480 9.843334 CCTCGGAAGTAAAGATGATTATAGTAC 57.157 37.037 0.00 0.00 0.00 2.73
5577 7612 3.371102 TCTGTATGCCGCTGAGAATAC 57.629 47.619 0.00 0.00 0.00 1.89
5609 7644 9.309516 CGTAATTGCTAGTAGAGTTTTAATCCA 57.690 33.333 0.00 0.00 0.00 3.41
5827 7864 4.097135 TCTGATCTTCCGCTAGAACTTCTG 59.903 45.833 1.17 0.00 0.00 3.02
6116 8153 6.464180 GCAGATTCCATCCTATTTCTCTCAGT 60.464 42.308 0.00 0.00 0.00 3.41
6264 8319 4.637534 AGACGACTCCATGGATTTCATTTG 59.362 41.667 16.63 3.11 32.92 2.32
6265 8320 4.588899 ACGACTCCATGGATTTCATTTGA 58.411 39.130 16.63 0.00 32.92 2.69
6266 8321 4.637534 ACGACTCCATGGATTTCATTTGAG 59.362 41.667 16.63 1.50 37.80 3.02
6445 8503 6.894682 ACATAATCTCCTCTTTCCCTTCTTC 58.105 40.000 0.00 0.00 0.00 2.87
6511 8569 6.096846 ACTTACAGAAATGTGCTTTTCAGGTT 59.903 34.615 11.40 0.00 37.93 3.50
6550 8608 3.807622 ACACTTGTTATGTCGTGGAGTTG 59.192 43.478 0.00 0.00 0.00 3.16
6554 8612 5.046878 ACTTGTTATGTCGTGGAGTTGGATA 60.047 40.000 0.00 0.00 0.00 2.59
6555 8613 4.751060 TGTTATGTCGTGGAGTTGGATAC 58.249 43.478 0.00 0.00 0.00 2.24
6674 8758 6.436218 TCTTCAGGTCTAAAAATAAAAGGGCC 59.564 38.462 0.00 0.00 0.00 5.80
6716 8801 1.198759 ACAGGATAGCCACAACCGGT 61.199 55.000 0.00 0.00 36.29 5.28
6725 8810 1.253100 CCACAACCGGTAGGCAAAAT 58.747 50.000 8.00 0.00 42.76 1.82
6764 8875 8.358148 ACTAAACACCTATCCTATTACATGACG 58.642 37.037 0.00 0.00 0.00 4.35
6771 8882 2.969262 TCCTATTACATGACGGCCATCA 59.031 45.455 2.87 2.87 31.94 3.07
6808 8942 9.448438 CCATCGAATAGATCCAATAACCAAATA 57.552 33.333 0.00 0.00 37.52 1.40
6831 8966 1.218047 CTGGCCTCCGTCGAATGAA 59.782 57.895 3.32 0.00 0.00 2.57
6961 10053 7.497595 CCTAATAAAGCACATACTCCTACACA 58.502 38.462 0.00 0.00 0.00 3.72
7013 11064 4.763793 CCATCTAGCCACATCCCAAATAAG 59.236 45.833 0.00 0.00 0.00 1.73
7020 11071 3.692101 CCACATCCCAAATAAGCGTGTTA 59.308 43.478 0.00 0.00 0.00 2.41
7209 11814 5.850557 TGACTTGTTTGTGGACAAATCAT 57.149 34.783 8.14 0.00 46.12 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.690840 GTGTTATGTTGAAAGCATTAAAGTCAC 58.309 33.333 0.00 0.00 0.00 3.67
6 7 8.629158 AGTGTTATGTTGAAAGCATTAAAGTCA 58.371 29.630 0.00 0.00 0.00 3.41
7 8 9.463443 AAGTGTTATGTTGAAAGCATTAAAGTC 57.537 29.630 0.00 0.00 0.00 3.01
8 9 9.816354 AAAGTGTTATGTTGAAAGCATTAAAGT 57.184 25.926 0.00 0.00 0.00 2.66
15 16 9.677567 GAATCTAAAAGTGTTATGTTGAAAGCA 57.322 29.630 0.00 0.00 0.00 3.91
16 17 9.129209 GGAATCTAAAAGTGTTATGTTGAAAGC 57.871 33.333 0.00 0.00 0.00 3.51
59 60 9.772973 TGCGAATATTTCCTTAATAGCTTCTTA 57.227 29.630 0.00 0.00 32.40 2.10
60 61 8.677148 TGCGAATATTTCCTTAATAGCTTCTT 57.323 30.769 0.00 0.00 32.40 2.52
61 62 8.677148 TTGCGAATATTTCCTTAATAGCTTCT 57.323 30.769 0.00 0.00 32.40 2.85
62 63 9.730420 TTTTGCGAATATTTCCTTAATAGCTTC 57.270 29.630 0.00 0.00 32.40 3.86
64 65 9.899226 GATTTTGCGAATATTTCCTTAATAGCT 57.101 29.630 0.00 0.00 32.40 3.32
65 66 9.129209 GGATTTTGCGAATATTTCCTTAATAGC 57.871 33.333 0.00 0.00 32.40 2.97
70 71 9.403583 AGTAAGGATTTTGCGAATATTTCCTTA 57.596 29.630 14.48 14.48 41.21 2.69
71 72 8.293699 AGTAAGGATTTTGCGAATATTTCCTT 57.706 30.769 15.99 15.99 42.90 3.36
72 73 7.775561 AGAGTAAGGATTTTGCGAATATTTCCT 59.224 33.333 0.00 0.00 33.63 3.36
73 74 7.857885 CAGAGTAAGGATTTTGCGAATATTTCC 59.142 37.037 0.00 0.00 0.00 3.13
74 75 8.398665 ACAGAGTAAGGATTTTGCGAATATTTC 58.601 33.333 0.00 0.00 0.00 2.17
75 76 8.184192 CACAGAGTAAGGATTTTGCGAATATTT 58.816 33.333 0.00 0.00 0.00 1.40
76 77 7.552687 TCACAGAGTAAGGATTTTGCGAATATT 59.447 33.333 0.00 0.00 0.00 1.28
77 78 7.047891 TCACAGAGTAAGGATTTTGCGAATAT 58.952 34.615 0.00 0.00 0.00 1.28
78 79 6.403049 TCACAGAGTAAGGATTTTGCGAATA 58.597 36.000 0.00 0.00 0.00 1.75
79 80 5.245531 TCACAGAGTAAGGATTTTGCGAAT 58.754 37.500 0.00 0.00 0.00 3.34
80 81 4.637276 TCACAGAGTAAGGATTTTGCGAA 58.363 39.130 0.00 0.00 0.00 4.70
81 82 4.265904 TCACAGAGTAAGGATTTTGCGA 57.734 40.909 0.00 0.00 0.00 5.10
82 83 5.551760 AATCACAGAGTAAGGATTTTGCG 57.448 39.130 0.00 0.00 0.00 4.85
83 84 9.691362 TTTTTAATCACAGAGTAAGGATTTTGC 57.309 29.630 0.00 0.00 32.62 3.68
90 91 9.755064 CGTATTGTTTTTAATCACAGAGTAAGG 57.245 33.333 0.00 0.00 0.00 2.69
120 121 9.786105 CACAGTGTTTCATACAAAATGCATATA 57.214 29.630 0.00 0.00 38.80 0.86
121 122 7.276218 GCACAGTGTTTCATACAAAATGCATAT 59.724 33.333 0.00 0.00 38.64 1.78
122 123 6.585702 GCACAGTGTTTCATACAAAATGCATA 59.414 34.615 0.00 0.00 38.64 3.14
123 124 5.406175 GCACAGTGTTTCATACAAAATGCAT 59.594 36.000 1.61 0.00 38.64 3.96
124 125 4.744137 GCACAGTGTTTCATACAAAATGCA 59.256 37.500 1.61 0.00 38.64 3.96
125 126 4.744137 TGCACAGTGTTTCATACAAAATGC 59.256 37.500 1.61 0.00 38.80 3.56
126 127 6.641723 TCATGCACAGTGTTTCATACAAAATG 59.358 34.615 1.61 0.00 38.80 2.32
127 128 6.642131 GTCATGCACAGTGTTTCATACAAAAT 59.358 34.615 1.61 0.00 38.80 1.82
128 129 5.976534 GTCATGCACAGTGTTTCATACAAAA 59.023 36.000 1.61 0.00 38.80 2.44
129 130 5.299028 AGTCATGCACAGTGTTTCATACAAA 59.701 36.000 1.61 0.00 38.80 2.83
130 131 4.821260 AGTCATGCACAGTGTTTCATACAA 59.179 37.500 1.61 0.00 38.80 2.41
131 132 4.388485 AGTCATGCACAGTGTTTCATACA 58.612 39.130 1.61 0.00 0.00 2.29
132 133 5.362556 AAGTCATGCACAGTGTTTCATAC 57.637 39.130 1.61 6.94 0.00 2.39
133 134 5.530543 TCAAAGTCATGCACAGTGTTTCATA 59.469 36.000 1.61 0.00 0.00 2.15
134 135 4.338964 TCAAAGTCATGCACAGTGTTTCAT 59.661 37.500 1.61 0.00 0.00 2.57
135 136 3.693578 TCAAAGTCATGCACAGTGTTTCA 59.306 39.130 1.61 0.00 0.00 2.69
136 137 4.291540 TCAAAGTCATGCACAGTGTTTC 57.708 40.909 1.61 0.00 0.00 2.78
137 138 4.924305 ATCAAAGTCATGCACAGTGTTT 57.076 36.364 1.61 0.00 0.00 2.83
138 139 5.299028 TGTTATCAAAGTCATGCACAGTGTT 59.701 36.000 1.61 0.00 0.00 3.32
139 140 4.821260 TGTTATCAAAGTCATGCACAGTGT 59.179 37.500 1.61 0.00 0.00 3.55
140 141 5.361135 TGTTATCAAAGTCATGCACAGTG 57.639 39.130 0.00 0.00 0.00 3.66
141 142 7.870509 ATATGTTATCAAAGTCATGCACAGT 57.129 32.000 0.00 0.00 0.00 3.55
163 164 9.851686 AGGTCATGCATTTAGAACTTCATTATA 57.148 29.630 0.00 0.00 0.00 0.98
164 165 8.757982 AGGTCATGCATTTAGAACTTCATTAT 57.242 30.769 0.00 0.00 0.00 1.28
165 166 8.579850 AAGGTCATGCATTTAGAACTTCATTA 57.420 30.769 9.42 0.00 34.38 1.90
166 167 7.472334 AAGGTCATGCATTTAGAACTTCATT 57.528 32.000 9.42 0.00 34.38 2.57
167 168 8.757982 ATAAGGTCATGCATTTAGAACTTCAT 57.242 30.769 16.62 8.42 39.76 2.57
168 169 8.579850 AATAAGGTCATGCATTTAGAACTTCA 57.420 30.769 16.62 6.89 39.76 3.02
169 170 9.508567 GAAATAAGGTCATGCATTTAGAACTTC 57.491 33.333 16.62 2.62 39.76 3.01
170 171 9.023962 TGAAATAAGGTCATGCATTTAGAACTT 57.976 29.630 17.13 17.13 41.74 2.66
171 172 8.462016 GTGAAATAAGGTCATGCATTTAGAACT 58.538 33.333 0.00 0.00 0.00 3.01
172 173 8.462016 AGTGAAATAAGGTCATGCATTTAGAAC 58.538 33.333 0.00 0.00 0.00 3.01
173 174 8.461222 CAGTGAAATAAGGTCATGCATTTAGAA 58.539 33.333 0.00 0.00 0.00 2.10
174 175 7.415541 GCAGTGAAATAAGGTCATGCATTTAGA 60.416 37.037 0.00 0.00 33.49 2.10
175 176 6.694411 GCAGTGAAATAAGGTCATGCATTTAG 59.306 38.462 0.00 0.00 33.49 1.85
176 177 6.377996 AGCAGTGAAATAAGGTCATGCATTTA 59.622 34.615 0.00 0.00 34.62 1.40
177 178 5.186409 AGCAGTGAAATAAGGTCATGCATTT 59.814 36.000 0.00 0.00 34.62 2.32
178 179 4.708421 AGCAGTGAAATAAGGTCATGCATT 59.292 37.500 0.00 0.00 34.62 3.56
179 180 4.275810 AGCAGTGAAATAAGGTCATGCAT 58.724 39.130 0.00 0.00 34.62 3.96
180 181 3.689347 AGCAGTGAAATAAGGTCATGCA 58.311 40.909 0.00 0.00 34.62 3.96
181 182 4.708726 AAGCAGTGAAATAAGGTCATGC 57.291 40.909 0.00 0.00 33.47 4.06
182 183 6.506500 AGAAAGCAGTGAAATAAGGTCATG 57.493 37.500 0.00 0.00 0.00 3.07
183 184 8.814038 ATTAGAAAGCAGTGAAATAAGGTCAT 57.186 30.769 0.00 0.00 0.00 3.06
184 185 9.162764 GTATTAGAAAGCAGTGAAATAAGGTCA 57.837 33.333 0.00 0.00 0.00 4.02
185 186 9.162764 TGTATTAGAAAGCAGTGAAATAAGGTC 57.837 33.333 0.00 0.00 0.00 3.85
186 187 9.167311 CTGTATTAGAAAGCAGTGAAATAAGGT 57.833 33.333 0.00 0.00 0.00 3.50
187 188 9.383519 TCTGTATTAGAAAGCAGTGAAATAAGG 57.616 33.333 0.00 0.00 30.84 2.69
203 204 9.516314 CGTAGATGACAACAATTCTGTATTAGA 57.484 33.333 0.00 0.00 33.45 2.10
204 205 9.302345 ACGTAGATGACAACAATTCTGTATTAG 57.698 33.333 0.00 0.00 33.45 1.73
206 207 9.817809 ATACGTAGATGACAACAATTCTGTATT 57.182 29.630 0.08 0.00 33.45 1.89
207 208 9.464714 GATACGTAGATGACAACAATTCTGTAT 57.535 33.333 0.08 0.00 33.45 2.29
208 209 7.642586 CGATACGTAGATGACAACAATTCTGTA 59.357 37.037 0.08 0.00 33.45 2.74
209 210 6.472486 CGATACGTAGATGACAACAATTCTGT 59.528 38.462 0.08 0.00 37.39 3.41
210 211 6.472486 ACGATACGTAGATGACAACAATTCTG 59.528 38.462 0.08 0.00 38.73 3.02
211 212 6.561614 ACGATACGTAGATGACAACAATTCT 58.438 36.000 0.08 0.00 38.73 2.40
212 213 6.807708 ACGATACGTAGATGACAACAATTC 57.192 37.500 0.08 0.00 38.73 2.17
213 214 7.033791 AGAACGATACGTAGATGACAACAATT 58.966 34.615 0.08 0.00 39.99 2.32
214 215 6.561614 AGAACGATACGTAGATGACAACAAT 58.438 36.000 0.08 0.00 39.99 2.71
215 216 5.946298 AGAACGATACGTAGATGACAACAA 58.054 37.500 0.08 0.00 39.99 2.83
216 217 5.556355 AGAACGATACGTAGATGACAACA 57.444 39.130 0.08 0.00 39.99 3.33
217 218 9.475505 GATATAGAACGATACGTAGATGACAAC 57.524 37.037 0.08 0.00 39.99 3.32
218 219 8.378421 CGATATAGAACGATACGTAGATGACAA 58.622 37.037 0.08 0.00 39.99 3.18
219 220 7.009907 CCGATATAGAACGATACGTAGATGACA 59.990 40.741 0.08 0.00 39.99 3.58
220 221 7.009999 ACCGATATAGAACGATACGTAGATGAC 59.990 40.741 0.08 0.00 39.99 3.06
221 222 7.009907 CACCGATATAGAACGATACGTAGATGA 59.990 40.741 0.08 0.00 39.99 2.92
222 223 7.118088 CACCGATATAGAACGATACGTAGATG 58.882 42.308 0.08 0.00 39.99 2.90
223 224 6.257411 CCACCGATATAGAACGATACGTAGAT 59.743 42.308 0.08 0.00 39.99 1.98
224 225 5.578336 CCACCGATATAGAACGATACGTAGA 59.422 44.000 0.08 0.00 39.99 2.59
225 226 5.578336 TCCACCGATATAGAACGATACGTAG 59.422 44.000 0.08 0.00 39.99 3.51
226 227 5.348724 GTCCACCGATATAGAACGATACGTA 59.651 44.000 0.00 0.00 39.99 3.57
227 228 4.153117 GTCCACCGATATAGAACGATACGT 59.847 45.833 0.00 0.00 43.97 3.57
228 229 4.152938 TGTCCACCGATATAGAACGATACG 59.847 45.833 0.00 0.00 0.00 3.06
229 230 5.618056 TGTCCACCGATATAGAACGATAC 57.382 43.478 0.00 0.00 0.00 2.24
230 231 7.042254 CGATATGTCCACCGATATAGAACGATA 60.042 40.741 0.00 0.00 0.00 2.92
231 232 6.238402 CGATATGTCCACCGATATAGAACGAT 60.238 42.308 0.00 0.00 0.00 3.73
232 233 5.064325 CGATATGTCCACCGATATAGAACGA 59.936 44.000 0.00 0.00 0.00 3.85
233 234 5.263948 CGATATGTCCACCGATATAGAACG 58.736 45.833 0.00 0.00 0.00 3.95
234 235 5.450137 CCCGATATGTCCACCGATATAGAAC 60.450 48.000 0.00 0.00 0.00 3.01
235 236 4.643334 CCCGATATGTCCACCGATATAGAA 59.357 45.833 0.00 0.00 0.00 2.10
236 237 4.204799 CCCGATATGTCCACCGATATAGA 58.795 47.826 0.00 0.00 0.00 1.98
237 238 3.243434 GCCCGATATGTCCACCGATATAG 60.243 52.174 0.00 0.00 0.00 1.31
238 239 2.691526 GCCCGATATGTCCACCGATATA 59.308 50.000 0.00 0.00 0.00 0.86
239 240 1.480954 GCCCGATATGTCCACCGATAT 59.519 52.381 0.00 0.00 0.00 1.63
240 241 0.892755 GCCCGATATGTCCACCGATA 59.107 55.000 0.00 0.00 0.00 2.92
241 242 0.832135 AGCCCGATATGTCCACCGAT 60.832 55.000 0.00 0.00 0.00 4.18
242 243 0.178984 TAGCCCGATATGTCCACCGA 60.179 55.000 0.00 0.00 0.00 4.69
243 244 0.243907 CTAGCCCGATATGTCCACCG 59.756 60.000 0.00 0.00 0.00 4.94
244 245 1.629043 TCTAGCCCGATATGTCCACC 58.371 55.000 0.00 0.00 0.00 4.61
245 246 4.261238 CGATATCTAGCCCGATATGTCCAC 60.261 50.000 9.39 0.00 36.88 4.02
246 247 3.883489 CGATATCTAGCCCGATATGTCCA 59.117 47.826 9.39 0.00 36.88 4.02
247 248 3.253677 CCGATATCTAGCCCGATATGTCC 59.746 52.174 9.39 0.00 36.88 4.02
248 249 3.884091 ACCGATATCTAGCCCGATATGTC 59.116 47.826 9.39 0.00 36.88 3.06
249 250 3.884091 GACCGATATCTAGCCCGATATGT 59.116 47.826 9.39 3.78 36.88 2.29
250 251 3.883489 TGACCGATATCTAGCCCGATATG 59.117 47.826 9.39 1.21 36.88 1.78
251 252 4.166246 TGACCGATATCTAGCCCGATAT 57.834 45.455 0.34 5.34 38.85 1.63
252 253 3.639672 TGACCGATATCTAGCCCGATA 57.360 47.619 0.34 0.00 0.00 2.92
253 254 2.509166 TGACCGATATCTAGCCCGAT 57.491 50.000 0.34 0.00 0.00 4.18
254 255 2.509166 ATGACCGATATCTAGCCCGA 57.491 50.000 0.34 0.00 0.00 5.14
255 256 3.058846 CGATATGACCGATATCTAGCCCG 60.059 52.174 0.34 0.00 40.64 6.13
256 257 3.253677 CCGATATGACCGATATCTAGCCC 59.746 52.174 0.34 0.00 40.64 5.19
257 258 3.884091 ACCGATATGACCGATATCTAGCC 59.116 47.826 0.34 0.00 40.64 3.93
258 259 4.318903 CGACCGATATGACCGATATCTAGC 60.319 50.000 0.34 0.00 40.64 3.42
259 260 5.048507 TCGACCGATATGACCGATATCTAG 58.951 45.833 0.34 0.00 40.64 2.43
260 261 5.014808 TCGACCGATATGACCGATATCTA 57.985 43.478 0.34 0.00 40.64 1.98
261 262 3.870274 TCGACCGATATGACCGATATCT 58.130 45.455 0.34 0.00 40.64 1.98
262 263 4.815040 ATCGACCGATATGACCGATATC 57.185 45.455 2.75 0.00 39.75 1.63
263 264 5.366460 AGTATCGACCGATATGACCGATAT 58.634 41.667 14.18 0.00 41.96 1.63
264 265 4.763073 AGTATCGACCGATATGACCGATA 58.237 43.478 14.18 0.00 40.04 2.92
265 266 3.607741 AGTATCGACCGATATGACCGAT 58.392 45.455 14.18 0.00 41.88 4.18
266 267 3.049708 AGTATCGACCGATATGACCGA 57.950 47.619 14.18 0.00 39.04 4.69
267 268 3.826236 AAGTATCGACCGATATGACCG 57.174 47.619 14.18 0.00 39.04 4.79
268 269 5.117355 TCAAAGTATCGACCGATATGACC 57.883 43.478 14.18 3.24 39.04 4.02
269 270 5.800941 GGATCAAAGTATCGACCGATATGAC 59.199 44.000 14.18 5.71 39.04 3.06
270 271 5.475564 TGGATCAAAGTATCGACCGATATGA 59.524 40.000 14.18 13.66 39.04 2.15
271 272 5.709966 TGGATCAAAGTATCGACCGATATG 58.290 41.667 14.18 9.48 39.04 1.78
272 273 5.977489 TGGATCAAAGTATCGACCGATAT 57.023 39.130 14.18 0.00 39.04 1.63
273 274 5.977489 ATGGATCAAAGTATCGACCGATA 57.023 39.130 7.92 7.92 36.17 2.92
274 275 4.873746 ATGGATCAAAGTATCGACCGAT 57.126 40.909 9.93 9.93 38.54 4.18
275 276 5.391629 CGATATGGATCAAAGTATCGACCGA 60.392 44.000 16.56 0.00 45.16 4.69
276 277 4.793731 CGATATGGATCAAAGTATCGACCG 59.206 45.833 16.56 0.00 45.16 4.79
277 278 5.103000 CCGATATGGATCAAAGTATCGACC 58.897 45.833 20.30 0.00 45.16 4.79
278 279 5.950883 TCCGATATGGATCAAAGTATCGAC 58.049 41.667 20.30 0.00 45.16 4.20
331 332 9.908152 CTCTACCGACATAAACATAACATATCA 57.092 33.333 0.00 0.00 0.00 2.15
332 333 8.861101 GCTCTACCGACATAAACATAACATATC 58.139 37.037 0.00 0.00 0.00 1.63
333 334 8.585881 AGCTCTACCGACATAAACATAACATAT 58.414 33.333 0.00 0.00 0.00 1.78
334 335 7.948357 AGCTCTACCGACATAAACATAACATA 58.052 34.615 0.00 0.00 0.00 2.29
335 336 6.817184 AGCTCTACCGACATAAACATAACAT 58.183 36.000 0.00 0.00 0.00 2.71
336 337 6.216801 AGCTCTACCGACATAAACATAACA 57.783 37.500 0.00 0.00 0.00 2.41
337 338 6.755141 TGAAGCTCTACCGACATAAACATAAC 59.245 38.462 0.00 0.00 0.00 1.89
338 339 6.869695 TGAAGCTCTACCGACATAAACATAA 58.130 36.000 0.00 0.00 0.00 1.90
339 340 6.459670 TGAAGCTCTACCGACATAAACATA 57.540 37.500 0.00 0.00 0.00 2.29
340 341 5.339008 TGAAGCTCTACCGACATAAACAT 57.661 39.130 0.00 0.00 0.00 2.71
341 342 4.794278 TGAAGCTCTACCGACATAAACA 57.206 40.909 0.00 0.00 0.00 2.83
342 343 6.147328 ACTTTTGAAGCTCTACCGACATAAAC 59.853 38.462 0.00 0.00 0.00 2.01
343 344 6.147164 CACTTTTGAAGCTCTACCGACATAAA 59.853 38.462 0.00 0.00 0.00 1.40
344 345 5.637810 CACTTTTGAAGCTCTACCGACATAA 59.362 40.000 0.00 0.00 0.00 1.90
345 346 5.047590 TCACTTTTGAAGCTCTACCGACATA 60.048 40.000 0.00 0.00 0.00 2.29
346 347 3.997021 CACTTTTGAAGCTCTACCGACAT 59.003 43.478 0.00 0.00 0.00 3.06
347 348 3.069016 TCACTTTTGAAGCTCTACCGACA 59.931 43.478 0.00 0.00 0.00 4.35
348 349 3.650139 TCACTTTTGAAGCTCTACCGAC 58.350 45.455 0.00 0.00 0.00 4.79
349 350 4.245660 CATCACTTTTGAAGCTCTACCGA 58.754 43.478 0.00 0.00 34.61 4.69
350 351 3.997021 ACATCACTTTTGAAGCTCTACCG 59.003 43.478 0.00 0.00 34.61 4.02
351 352 6.019479 CGATACATCACTTTTGAAGCTCTACC 60.019 42.308 0.00 0.00 34.61 3.18
352 353 6.019479 CCGATACATCACTTTTGAAGCTCTAC 60.019 42.308 0.00 0.00 34.61 2.59
353 354 6.042777 CCGATACATCACTTTTGAAGCTCTA 58.957 40.000 0.00 0.00 34.61 2.43
354 355 4.872691 CCGATACATCACTTTTGAAGCTCT 59.127 41.667 0.00 0.00 34.61 4.09
355 356 4.631813 ACCGATACATCACTTTTGAAGCTC 59.368 41.667 0.00 0.00 34.61 4.09
356 357 4.579869 ACCGATACATCACTTTTGAAGCT 58.420 39.130 0.00 0.00 34.61 3.74
357 358 4.631813 AGACCGATACATCACTTTTGAAGC 59.368 41.667 0.00 0.00 34.61 3.86
358 359 9.698309 ATATAGACCGATACATCACTTTTGAAG 57.302 33.333 0.00 0.00 34.61 3.02
391 392 9.007901 GCTTTTAAATCTAGGCTGATATGACAT 57.992 33.333 0.00 0.00 0.00 3.06
392 393 8.213679 AGCTTTTAAATCTAGGCTGATATGACA 58.786 33.333 0.00 0.00 0.00 3.58
393 394 8.614469 AGCTTTTAAATCTAGGCTGATATGAC 57.386 34.615 0.00 0.00 0.00 3.06
394 395 9.060347 CAAGCTTTTAAATCTAGGCTGATATGA 57.940 33.333 0.00 0.00 0.00 2.15
395 396 9.060347 TCAAGCTTTTAAATCTAGGCTGATATG 57.940 33.333 0.00 0.00 0.00 1.78
396 397 9.061435 GTCAAGCTTTTAAATCTAGGCTGATAT 57.939 33.333 0.00 0.00 0.00 1.63
397 398 7.499232 GGTCAAGCTTTTAAATCTAGGCTGATA 59.501 37.037 0.00 0.00 0.00 2.15
398 399 6.319911 GGTCAAGCTTTTAAATCTAGGCTGAT 59.680 38.462 0.00 0.00 0.00 2.90
399 400 5.648092 GGTCAAGCTTTTAAATCTAGGCTGA 59.352 40.000 0.00 0.00 0.00 4.26
400 401 5.163612 GGGTCAAGCTTTTAAATCTAGGCTG 60.164 44.000 0.00 0.00 0.00 4.85
401 402 4.950475 GGGTCAAGCTTTTAAATCTAGGCT 59.050 41.667 0.00 0.00 0.00 4.58
402 403 4.705023 TGGGTCAAGCTTTTAAATCTAGGC 59.295 41.667 0.00 0.00 0.00 3.93
403 404 5.163754 CGTGGGTCAAGCTTTTAAATCTAGG 60.164 44.000 0.00 0.00 0.00 3.02
404 405 5.673818 GCGTGGGTCAAGCTTTTAAATCTAG 60.674 44.000 0.00 0.00 36.06 2.43
405 406 4.155280 GCGTGGGTCAAGCTTTTAAATCTA 59.845 41.667 0.00 0.00 36.06 1.98
406 407 3.057526 GCGTGGGTCAAGCTTTTAAATCT 60.058 43.478 0.00 0.00 36.06 2.40
407 408 3.242518 GCGTGGGTCAAGCTTTTAAATC 58.757 45.455 0.00 0.00 36.06 2.17
408 409 2.625790 TGCGTGGGTCAAGCTTTTAAAT 59.374 40.909 0.00 0.00 39.43 1.40
409 410 2.025155 TGCGTGGGTCAAGCTTTTAAA 58.975 42.857 0.00 0.00 39.43 1.52
410 411 1.335496 GTGCGTGGGTCAAGCTTTTAA 59.665 47.619 0.00 0.00 39.43 1.52
411 412 0.948678 GTGCGTGGGTCAAGCTTTTA 59.051 50.000 0.00 0.00 39.43 1.52
412 413 1.733526 GTGCGTGGGTCAAGCTTTT 59.266 52.632 0.00 0.00 39.43 2.27
413 414 2.193536 GGTGCGTGGGTCAAGCTTT 61.194 57.895 0.00 0.00 39.43 3.51
414 415 2.594592 GGTGCGTGGGTCAAGCTT 60.595 61.111 0.00 0.00 39.43 3.74
415 416 3.196207 ATGGTGCGTGGGTCAAGCT 62.196 57.895 7.27 0.00 39.43 3.74
416 417 2.672996 ATGGTGCGTGGGTCAAGC 60.673 61.111 0.00 0.00 39.17 4.01
417 418 2.390599 CGATGGTGCGTGGGTCAAG 61.391 63.158 0.00 0.00 0.00 3.02
418 419 2.358125 CGATGGTGCGTGGGTCAA 60.358 61.111 0.00 0.00 0.00 3.18
419 420 4.386951 CCGATGGTGCGTGGGTCA 62.387 66.667 0.00 0.00 0.00 4.02
420 421 4.077184 TCCGATGGTGCGTGGGTC 62.077 66.667 0.00 0.00 0.00 4.46
429 430 2.494073 GTGAACTTCTCTCTCCGATGGT 59.506 50.000 0.00 0.00 0.00 3.55
496 497 1.883084 CGCGTTGGTCCTATGAGCC 60.883 63.158 0.00 0.00 38.24 4.70
563 564 1.801178 GTGCAGCCAGAGTCAAAGTAC 59.199 52.381 0.00 0.00 0.00 2.73
564 565 1.270839 GGTGCAGCCAGAGTCAAAGTA 60.271 52.381 4.03 0.00 37.17 2.24
565 566 0.536006 GGTGCAGCCAGAGTCAAAGT 60.536 55.000 4.03 0.00 37.17 2.66
566 567 1.572085 CGGTGCAGCCAGAGTCAAAG 61.572 60.000 10.90 0.00 36.97 2.77
567 568 1.597854 CGGTGCAGCCAGAGTCAAA 60.598 57.895 10.90 0.00 36.97 2.69
568 569 2.031012 CGGTGCAGCCAGAGTCAA 59.969 61.111 10.90 0.00 36.97 3.18
569 570 2.917227 TCGGTGCAGCCAGAGTCA 60.917 61.111 10.90 0.00 36.97 3.41
570 571 2.125753 CTCGGTGCAGCCAGAGTC 60.126 66.667 10.90 0.00 36.97 3.36
571 572 2.919856 ACTCGGTGCAGCCAGAGT 60.920 61.111 17.63 17.49 42.19 3.24
604 605 0.173708 AGCATCGGACGTTCCTCTTC 59.826 55.000 0.00 0.00 33.30 2.87
694 2121 1.003355 CGGGAGCACAAGTGTGGAT 60.003 57.895 13.10 0.00 45.72 3.41
726 2153 2.730524 GGAGAGTCCAGGGAGCTGC 61.731 68.421 0.00 0.00 36.28 5.25
746 2173 0.393808 AAAGTGGTGTGTGGCTCGTT 60.394 50.000 0.00 0.00 0.00 3.85
749 2176 0.663153 GTCAAAGTGGTGTGTGGCTC 59.337 55.000 0.00 0.00 0.00 4.70
1660 3093 2.029739 CACAATCAGGTTGCAGCATTCA 60.030 45.455 2.05 0.00 41.69 2.57
1727 3160 1.819903 GGACGGAGGGAGTATATCTGC 59.180 57.143 0.00 0.00 0.00 4.26
1770 3203 9.886132 TTAGTTCTAGATACATCCCTTTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
1824 3257 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
1861 3294 9.531942 CAAATCTTTATACAATAGCATGGCAAA 57.468 29.630 0.00 0.00 0.00 3.68
1905 3339 6.513806 TCTTTCTGCTAGCATTGCAATTTA 57.486 33.333 19.72 4.80 40.13 1.40
1944 3378 2.613595 CGCATGGCAATTACTCTGCTAA 59.386 45.455 5.56 0.00 39.82 3.09
1945 3379 2.212652 CGCATGGCAATTACTCTGCTA 58.787 47.619 5.56 0.00 39.82 3.49
2166 3600 2.202987 CACGCATCCCTCTGAGCC 60.203 66.667 0.00 0.00 0.00 4.70
2235 3669 1.145759 ACACGCTGTGACACGTTCAG 61.146 55.000 14.18 3.72 41.32 3.02
2504 4115 2.224967 ACACACCTAGTAGACGAACCCT 60.225 50.000 0.00 0.00 0.00 4.34
2510 4121 2.298163 ACCCAAACACACCTAGTAGACG 59.702 50.000 0.00 0.00 0.00 4.18
2515 4126 3.457012 AGTACAACCCAAACACACCTAGT 59.543 43.478 0.00 0.00 0.00 2.57
2552 4163 5.242393 GCCAAAATCCTACATGCAGACATAT 59.758 40.000 0.00 0.00 33.67 1.78
2640 4251 1.131638 TCTGCAGTGTCTGGACCTTT 58.868 50.000 14.67 0.00 31.21 3.11
2750 4362 6.071952 ACAATTGACCAATGAACATAGTGGAC 60.072 38.462 13.59 6.73 35.04 4.02
3144 4756 7.545265 TCACAATTCTAGCAAAATGTAAATGCC 59.455 33.333 0.00 0.00 40.93 4.40
3174 4789 4.771590 ACCGTAAACTGTTCTCGATGTA 57.228 40.909 15.24 0.00 0.00 2.29
3179 4794 3.565905 ACCTACCGTAAACTGTTCTCG 57.434 47.619 0.00 2.13 0.00 4.04
3193 4808 8.381636 TCTGTCCTACTGACTTATATACCTACC 58.618 40.741 0.00 0.00 44.75 3.18
3316 4932 8.220559 ACTCTAATTACCATAATGCTTGTCCAT 58.779 33.333 0.00 0.00 0.00 3.41
3720 5336 2.678336 CGACTTGATTGGGACTAAAGGC 59.322 50.000 0.00 0.00 0.00 4.35
3731 5347 3.195661 GGTTAGCCTACCGACTTGATTG 58.804 50.000 0.00 0.00 0.00 2.67
3734 5350 1.188863 GGGTTAGCCTACCGACTTGA 58.811 55.000 0.00 0.00 39.18 3.02
3797 5445 3.277142 AGGACCGGAATATCACCAAAC 57.723 47.619 9.46 0.00 0.00 2.93
3835 5483 2.040278 CCAAAGTTGACATGGGAGGAGA 59.960 50.000 0.00 0.00 0.00 3.71
3874 5523 4.668837 CGGTTAAAGTGTGTTGAAATGTCG 59.331 41.667 0.00 0.00 0.00 4.35
3908 5557 1.377856 GGCCTCCAGAAACTCCAGC 60.378 63.158 0.00 0.00 0.00 4.85
3931 5580 5.104151 TCTGAGATGGTTTGGGCATATACAA 60.104 40.000 0.00 0.00 0.00 2.41
4082 5734 5.615581 CGACTAAAAGACAACATGTTCAACG 59.384 40.000 8.48 0.00 0.00 4.10
4123 5775 5.575606 TGCGATTCTACTAGCAAAGTTGTAC 59.424 40.000 0.00 0.00 39.80 2.90
4136 5788 6.722129 AGGTTCTATAGGATTGCGATTCTACT 59.278 38.462 3.88 0.00 0.00 2.57
4207 5859 9.165035 CCCATAATGTAAGACATTTTTGCAAAT 57.835 29.630 13.65 0.00 45.80 2.32
4299 5952 6.855763 ATCAAAGCCAAATGGATAAAGTGA 57.144 33.333 2.98 0.17 37.39 3.41
4544 6200 2.573609 AATGGTAGTCGGACAGGCGC 62.574 60.000 11.27 0.00 0.00 6.53
4546 6203 2.167900 AGTAAATGGTAGTCGGACAGGC 59.832 50.000 11.27 0.00 0.00 4.85
4549 6206 4.018490 TGCTAGTAAATGGTAGTCGGACA 58.982 43.478 11.27 0.00 0.00 4.02
4559 6216 6.293626 GCAGATAATGTGGTGCTAGTAAATGG 60.294 42.308 0.00 0.00 32.97 3.16
4621 6356 3.894759 CTTTGGTGATGGATGAGGTCAT 58.105 45.455 0.00 0.00 39.70 3.06
4916 6951 9.419297 CAATAGCGATAGTATGGCTAACTAAAA 57.581 33.333 24.95 8.13 46.99 1.52
5043 7078 1.671328 TGTTTTGTGCGACGAATCCAA 59.329 42.857 0.00 0.00 0.00 3.53
5079 7114 0.318441 TTGAGCTGGACGACTCCTTG 59.682 55.000 0.00 0.00 37.48 3.61
5101 7136 6.076653 TCAATGGAGAGAATGAGAGCTCTAT 58.923 40.000 18.25 6.00 41.33 1.98
5177 7212 4.584327 ATGTTTGGTAGTGCTCAAAACC 57.416 40.909 0.00 0.00 35.08 3.27
5204 7239 4.857679 TGGTTTGTACCCAAAGTAACACT 58.142 39.130 0.00 0.00 44.35 3.55
5302 7337 8.412456 GGGAGTAATAGTTAACAGAGGTCTTAC 58.588 40.741 8.61 1.00 0.00 2.34
5322 7357 5.045869 CACTTATTTTGGGACAGAGGGAGTA 60.046 44.000 0.00 0.00 42.39 2.59
5323 7358 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
5324 7359 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
5325 7360 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
5326 7361 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
5327 7362 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
5328 7363 5.997746 TCAAGACACTTATTTTGGGACAGAG 59.002 40.000 0.00 0.00 42.39 3.35
5329 7364 5.935945 TCAAGACACTTATTTTGGGACAGA 58.064 37.500 0.00 0.00 42.39 3.41
5330 7365 5.335191 GCTCAAGACACTTATTTTGGGACAG 60.335 44.000 0.00 0.00 42.39 3.51
5331 7366 4.518970 GCTCAAGACACTTATTTTGGGACA 59.481 41.667 0.00 0.00 0.00 4.02
5332 7367 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
5333 7368 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
5334 7369 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
5335 7370 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
5336 7371 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
5337 7372 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
5338 7373 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
5339 7374 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
5340 7375 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
5341 7376 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
5342 7377 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
5343 7378 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
5344 7379 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
5345 7380 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
5369 7404 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
5371 7406 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
5372 7407 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
5373 7408 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
5374 7409 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
5375 7410 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
5376 7411 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
5379 7414 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5380 7415 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
5381 7416 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
5382 7417 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
5383 7418 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
5384 7419 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
5385 7420 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
5386 7421 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
5387 7422 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
5388 7423 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5389 7424 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
5390 7425 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
5391 7426 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5392 7427 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5393 7428 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5394 7429 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5395 7430 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5396 7431 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5397 7432 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5398 7433 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5399 7434 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5400 7435 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5401 7436 0.906282 GGTACTCCCTCCGTCCCAAA 60.906 60.000 0.00 0.00 0.00 3.28
5402 7437 1.305549 GGTACTCCCTCCGTCCCAA 60.306 63.158 0.00 0.00 0.00 4.12
5403 7438 2.243888 AGGTACTCCCTCCGTCCCA 61.244 63.158 0.00 0.00 40.71 4.37
5404 7439 2.688538 AGGTACTCCCTCCGTCCC 59.311 66.667 0.00 0.00 40.71 4.46
5416 7451 9.843334 CTATAATCATCTTTACTTCCGAGGTAC 57.157 37.037 0.00 0.00 0.00 3.34
5445 7480 1.788258 ACACTGACTCAGCGAACATG 58.212 50.000 5.92 0.00 34.37 3.21
5451 7486 6.467723 AAATTTAGTAACACTGACTCAGCG 57.532 37.500 5.92 0.00 34.37 5.18
5577 7612 6.230849 ACTCTACTAGCAATTACGATCGAG 57.769 41.667 24.34 8.42 0.00 4.04
5609 7644 4.759693 TCATATCCACACGAAAAAGCAAGT 59.240 37.500 0.00 0.00 0.00 3.16
5827 7864 1.739067 ATGGCTACCGAAAGAACTGC 58.261 50.000 0.00 0.00 0.00 4.40
5857 7894 3.503363 CCAGCAGCAGACAAACTTCATAA 59.497 43.478 0.00 0.00 0.00 1.90
5869 7906 1.206610 GATTCAGAGACCAGCAGCAGA 59.793 52.381 0.00 0.00 0.00 4.26
5875 7912 2.999355 GTCAACAGATTCAGAGACCAGC 59.001 50.000 0.00 0.00 0.00 4.85
6116 8153 2.108514 GCTGCTGCCGCTGATGTTA 61.109 57.895 11.11 0.00 37.28 2.41
6264 8319 0.547075 GGGCCCTAGTTTTCCTCCTC 59.453 60.000 17.04 0.00 0.00 3.71
6265 8320 0.121402 AGGGCCCTAGTTTTCCTCCT 59.879 55.000 27.42 0.00 0.00 3.69
6266 8321 0.547075 GAGGGCCCTAGTTTTCCTCC 59.453 60.000 28.78 3.69 38.36 4.30
6445 8503 4.511454 TCAATTGTTCTCCAGAAACAGACG 59.489 41.667 5.13 0.00 35.58 4.18
6637 8703 3.392616 AGACCTGAAGACTTGTGTTGGAT 59.607 43.478 0.00 0.00 0.00 3.41
6645 8712 9.899226 CCTTTTATTTTTAGACCTGAAGACTTG 57.101 33.333 0.00 0.00 0.00 3.16
6764 8875 1.555075 TGGAAGACAGTAGTGATGGCC 59.445 52.381 4.09 0.00 0.00 5.36
6771 8882 6.207810 GGATCTATTCGATGGAAGACAGTAGT 59.792 42.308 0.00 0.00 35.19 2.73
6808 8942 1.550130 TTCGACGGAGGCCAGGAAAT 61.550 55.000 5.01 0.00 0.00 2.17
6809 8943 1.550130 ATTCGACGGAGGCCAGGAAA 61.550 55.000 5.01 0.00 0.00 3.13
6811 8945 2.363795 ATTCGACGGAGGCCAGGA 60.364 61.111 5.01 0.00 0.00 3.86
6831 8966 2.229062 CTGATCCGTATGTGGTCGCTAT 59.771 50.000 0.00 0.00 0.00 2.97
6909 9222 2.210116 GGAACTGCAGAAACGACTTGA 58.790 47.619 23.35 0.00 0.00 3.02
6961 10053 3.118992 TGCAGAAACAGCGAGACATATCT 60.119 43.478 0.00 0.00 38.15 1.98
7013 11064 4.863491 TCCTCCGAATACTATTAACACGC 58.137 43.478 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.