Multiple sequence alignment - TraesCS5B01G123500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G123500 chr5B 100.000 5181 0 0 1 5181 222379444 222374264 0.000000e+00 9568.0
1 TraesCS5B01G123500 chr5B 91.241 274 1 3 396 648 222378902 222378631 8.250000e-93 351.0
2 TraesCS5B01G123500 chr5B 91.241 274 1 3 543 814 222379049 222378797 8.250000e-93 351.0
3 TraesCS5B01G123500 chr5B 95.556 90 2 2 821 908 540736742 540736653 5.410000e-30 143.0
4 TraesCS5B01G123500 chr5B 97.436 78 2 0 821 898 540739257 540739180 3.250000e-27 134.0
5 TraesCS5B01G123500 chr5B 84.211 133 14 6 799 928 540912421 540912549 7.050000e-24 122.0
6 TraesCS5B01G123500 chr5A 94.587 3935 138 35 711 4606 270190466 270186568 0.000000e+00 6017.0
7 TraesCS5B01G123500 chr5A 85.421 439 48 10 64 488 270191585 270191149 4.760000e-120 442.0
8 TraesCS5B01G123500 chr5A 82.873 362 43 11 147 491 270191113 270190754 1.810000e-79 307.0
9 TraesCS5B01G123500 chr5A 84.783 230 12 6 4759 4967 270186571 270186344 5.260000e-50 209.0
10 TraesCS5B01G123500 chr5A 89.286 112 9 3 795 904 561124537 561124647 2.520000e-28 137.0
11 TraesCS5B01G123500 chr5A 98.077 52 1 0 3614 3665 482768105 482768156 1.990000e-14 91.6
12 TraesCS5B01G123500 chr5D 92.668 1323 72 14 720 2023 209319534 209318218 0.000000e+00 1882.0
13 TraesCS5B01G123500 chr5D 96.417 949 28 5 3660 4606 209316986 209316042 0.000000e+00 1559.0
14 TraesCS5B01G123500 chr5D 93.324 689 32 3 2415 3092 209318218 209317533 0.000000e+00 1005.0
15 TraesCS5B01G123500 chr5D 95.411 523 18 3 3132 3654 209317537 209317021 0.000000e+00 828.0
16 TraesCS5B01G123500 chr5D 87.793 426 47 4 4759 5181 209316045 209315622 1.300000e-135 494.0
17 TraesCS5B01G123500 chr5D 87.218 399 36 11 64 460 209319820 209319435 1.710000e-119 440.0
18 TraesCS5B01G123500 chr5D 89.456 294 24 7 61 348 190571443 190571735 1.060000e-96 364.0
19 TraesCS5B01G123500 chr5D 89.691 291 23 7 64 348 209321126 209320837 1.060000e-96 364.0
20 TraesCS5B01G123500 chr5D 89.691 291 23 7 64 348 209322434 209322145 1.060000e-96 364.0
21 TraesCS5B01G123500 chr5D 89.310 290 25 6 64 348 209323734 209323446 4.930000e-95 359.0
22 TraesCS5B01G123500 chr5D 94.624 93 4 1 808 899 545942686 545942778 5.410000e-30 143.0
23 TraesCS5B01G123500 chr5D 92.079 101 6 2 802 900 113879298 113879398 1.950000e-29 141.0
24 TraesCS5B01G123500 chr5D 93.407 91 4 2 821 911 444078399 444078311 3.250000e-27 134.0
25 TraesCS5B01G123500 chr5D 96.296 81 3 0 818 898 444096975 444097055 3.250000e-27 134.0
26 TraesCS5B01G123500 chr5D 90.196 102 7 3 797 897 444099349 444099448 4.210000e-26 130.0
27 TraesCS5B01G123500 chr5D 96.364 55 1 1 3614 3668 370931243 370931190 7.150000e-14 89.8
28 TraesCS5B01G123500 chr5D 94.643 56 3 0 3614 3669 416973288 416973233 2.570000e-13 87.9
29 TraesCS5B01G123500 chr6B 98.089 157 2 1 4603 4758 680728653 680728497 6.610000e-69 272.0
30 TraesCS5B01G123500 chr6B 81.633 98 18 0 5071 5168 237364468 237364565 1.200000e-11 82.4
31 TraesCS5B01G123500 chr6B 90.385 52 5 0 2099 2150 82162334 82162283 9.310000e-08 69.4
32 TraesCS5B01G123500 chr2B 96.894 161 3 2 4599 4758 26101756 26101915 8.550000e-68 268.0
33 TraesCS5B01G123500 chr2B 96.835 158 4 1 4602 4758 485894156 485894313 3.980000e-66 263.0
34 TraesCS5B01G123500 chr7B 96.815 157 4 1 4603 4758 702625018 702624862 1.430000e-65 261.0
35 TraesCS5B01G123500 chr7B 97.351 151 4 0 4603 4753 371733307 371733157 1.850000e-64 257.0
36 TraesCS5B01G123500 chr7B 92.157 102 7 1 802 902 105480211 105480110 5.410000e-30 143.0
37 TraesCS5B01G123500 chr7B 92.929 99 6 1 801 899 687056243 687056340 5.410000e-30 143.0
38 TraesCS5B01G123500 chr7B 87.302 126 8 6 782 899 650237847 650237722 2.520000e-28 137.0
39 TraesCS5B01G123500 chr7B 78.571 224 20 19 1063 1261 32019628 32019408 7.050000e-24 122.0
40 TraesCS5B01G123500 chr4B 96.178 157 5 1 4603 4758 625978571 625978415 6.660000e-64 255.0
41 TraesCS5B01G123500 chr3B 96.178 157 5 1 4603 4758 822682426 822682270 6.660000e-64 255.0
42 TraesCS5B01G123500 chr3B 96.471 85 2 1 821 904 64322084 64322000 7.000000e-29 139.0
43 TraesCS5B01G123500 chr1D 95.570 158 6 1 4602 4758 126223505 126223348 8.610000e-63 252.0
44 TraesCS5B01G123500 chr1D 93.684 95 6 0 806 900 560666 560760 5.410000e-30 143.0
45 TraesCS5B01G123500 chr1D 88.182 110 10 2 802 909 357463610 357463502 1.510000e-25 128.0
46 TraesCS5B01G123500 chr4D 91.954 174 12 2 4602 4773 356873790 356873963 5.180000e-60 243.0
47 TraesCS5B01G123500 chr6A 90.184 163 14 2 1989 2150 47466790 47466951 1.460000e-50 211.0
48 TraesCS5B01G123500 chr6A 89.744 156 15 1 1995 2150 47482891 47483045 1.140000e-46 198.0
49 TraesCS5B01G123500 chr6A 98.077 52 1 0 3614 3665 146517207 146517258 1.990000e-14 91.6
50 TraesCS5B01G123500 chr6A 87.097 62 8 0 4849 4910 439297943 439298004 2.590000e-08 71.3
51 TraesCS5B01G123500 chr3D 88.953 172 14 4 1985 2152 320429979 320429809 1.890000e-49 207.0
52 TraesCS5B01G123500 chr3D 90.000 150 14 1 1985 2133 191562753 191562604 5.290000e-45 193.0
53 TraesCS5B01G123500 chr3D 96.591 88 3 0 818 905 442499380 442499467 4.180000e-31 147.0
54 TraesCS5B01G123500 chr3D 94.643 56 3 0 3610 3665 611532901 611532956 2.570000e-13 87.9
55 TraesCS5B01G123500 chr3D 94.643 56 2 1 3614 3668 19538057 19538002 9.240000e-13 86.1
56 TraesCS5B01G123500 chr3D 78.571 126 17 9 4811 4930 11265293 11265172 2.000000e-09 75.0
57 TraesCS5B01G123500 chr3D 74.468 188 37 11 4839 5018 388778285 388778469 2.590000e-08 71.3
58 TraesCS5B01G123500 chr3A 89.286 168 15 3 1983 2149 675873185 675873020 1.890000e-49 207.0
59 TraesCS5B01G123500 chr7A 93.000 100 6 1 802 901 696780369 696780467 1.500000e-30 145.0
60 TraesCS5B01G123500 chr4A 90.265 113 8 3 803 914 623387089 623386979 1.500000e-30 145.0
61 TraesCS5B01G123500 chr7D 86.131 137 12 5 1994 2126 164644846 164644979 1.950000e-29 141.0
62 TraesCS5B01G123500 chr7D 84.270 89 8 6 4849 4932 191419193 191419280 1.200000e-11 82.4
63 TraesCS5B01G123500 chr6D 92.708 96 7 0 808 903 277726382 277726287 7.000000e-29 139.0
64 TraesCS5B01G123500 chr6D 96.250 80 3 0 821 900 104302389 104302310 1.170000e-26 132.0
65 TraesCS5B01G123500 chr6D 80.723 83 13 3 4826 4906 380821487 380821406 1.560000e-05 62.1
66 TraesCS5B01G123500 chr1B 91.919 99 7 1 804 902 4329061 4329158 2.520000e-28 137.0
67 TraesCS5B01G123500 chr1B 87.719 114 14 0 2037 2150 673971802 673971915 3.250000e-27 134.0
68 TraesCS5B01G123500 chr1A 93.548 93 5 1 808 900 3369043 3369134 2.520000e-28 137.0
69 TraesCS5B01G123500 chr1A 95.946 74 3 0 824 897 458569602 458569529 2.530000e-23 121.0
70 TraesCS5B01G123500 chr1A 77.570 107 16 6 4866 4967 354830112 354830009 2.020000e-04 58.4
71 TraesCS5B01G123500 chr2D 94.545 55 2 1 3614 3668 145891637 145891584 3.320000e-12 84.2
72 TraesCS5B01G123500 chr2D 78.351 97 18 3 4829 4922 353162118 353162022 5.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G123500 chr5B 222374264 222379444 5180 True 3423.333333 9568 94.160667 1 5181 3 chr5B.!!$R1 5180
1 TraesCS5B01G123500 chr5A 270186344 270191585 5241 True 1743.750000 6017 86.916000 64 4967 4 chr5A.!!$R1 4903
2 TraesCS5B01G123500 chr5D 209315622 209323734 8112 True 810.555556 1882 91.280333 64 5181 9 chr5D.!!$R4 5117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 4452 0.378962 CAAAAGAAACGTGGTCGGCA 59.621 50.0 0.00 0.0 41.85 5.69 F
698 4620 0.378962 CAAAAGAAACGTGGTCGGCA 59.621 50.0 0.00 0.0 41.85 5.69 F
711 4633 0.391263 GTCGGCAGGATTCGAACCTT 60.391 55.0 14.28 0.0 37.14 3.50 F
1608 5540 0.604073 TACCGCGTGACCTGATTGAA 59.396 50.0 4.92 0.0 0.00 2.69 F
1738 5675 1.109296 CAACGTTTCGCTTGGTTTCG 58.891 50.0 0.00 0.0 0.00 3.46 F
2134 6072 1.257743 TGGAGAGACTACCACTGCAC 58.742 55.0 0.00 0.0 0.00 4.57 F
3103 7058 1.649664 GTCTGCCACTACTGCATCTG 58.350 55.0 0.00 0.0 38.22 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 5521 0.604073 TTCAATCAGGTCACGCGGTA 59.396 50.000 12.47 0.00 0.00 4.02 R
2134 6072 1.140161 TTATGAAGGACGGGCGTCG 59.860 57.895 0.00 0.00 45.41 5.12 R
2327 6267 1.153086 AAGCCAGCCCAGCTAATCG 60.153 57.895 0.00 0.00 40.49 3.34 R
3103 7058 0.393537 CTGGAGGTGGATGAGCAACC 60.394 60.000 0.00 0.00 0.00 3.77 R
3513 7469 4.642429 ACATGGGTAGAAGTTCTGTTGAC 58.358 43.478 15.90 5.35 0.00 3.18 R
4054 8040 2.629017 ATGCCAGTGGGGAGAAAATT 57.371 45.000 12.15 0.00 38.23 1.82 R
5042 9059 0.317479 GACAACACTAGAGGCACCGT 59.683 55.000 0.00 0.00 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.524305 CAAATGCCGTCGCGAAAA 57.476 50.000 12.06 0.00 38.08 2.29
18 19 2.050849 CAAATGCCGTCGCGAAAAC 58.949 52.632 12.06 3.02 38.08 2.43
19 20 1.439693 AAATGCCGTCGCGAAAACG 60.440 52.632 12.06 11.67 39.78 3.60
26 27 2.490697 CGTCGCGAAAACGGATTAAA 57.509 45.000 12.06 0.00 36.51 1.52
27 28 2.825189 CGTCGCGAAAACGGATTAAAA 58.175 42.857 12.06 0.00 36.51 1.52
28 29 3.216819 CGTCGCGAAAACGGATTAAAAA 58.783 40.909 12.06 0.00 36.51 1.94
29 30 3.841872 CGTCGCGAAAACGGATTAAAAAT 59.158 39.130 12.06 0.00 36.51 1.82
30 31 5.014483 CGTCGCGAAAACGGATTAAAAATA 58.986 37.500 12.06 0.00 36.51 1.40
31 32 5.166583 CGTCGCGAAAACGGATTAAAAATAG 59.833 40.000 12.06 0.00 36.51 1.73
32 33 6.017325 GTCGCGAAAACGGATTAAAAATAGT 58.983 36.000 12.06 0.00 0.00 2.12
33 34 6.520790 GTCGCGAAAACGGATTAAAAATAGTT 59.479 34.615 12.06 0.00 0.00 2.24
34 35 7.059831 GTCGCGAAAACGGATTAAAAATAGTTT 59.940 33.333 12.06 0.00 33.86 2.66
35 36 7.590689 TCGCGAAAACGGATTAAAAATAGTTTT 59.409 29.630 6.20 6.13 42.23 2.43
36 37 8.838961 CGCGAAAACGGATTAAAAATAGTTTTA 58.161 29.630 0.00 4.07 40.46 1.52
58 59 8.671384 TTTATAACACCTTATGATACCAGTGC 57.329 34.615 0.00 0.00 0.00 4.40
59 60 4.568072 AACACCTTATGATACCAGTGCA 57.432 40.909 0.00 0.00 0.00 4.57
60 61 4.778213 ACACCTTATGATACCAGTGCAT 57.222 40.909 0.00 0.00 0.00 3.96
61 62 5.116084 ACACCTTATGATACCAGTGCATT 57.884 39.130 0.00 0.00 0.00 3.56
62 63 6.247229 ACACCTTATGATACCAGTGCATTA 57.753 37.500 0.00 0.00 0.00 1.90
78 79 7.307694 CAGTGCATTACATGTTTAGACAACAT 58.692 34.615 2.30 0.00 41.18 2.71
109 110 6.910259 ATTAACTCTCCTTCCCCAATTACT 57.090 37.500 0.00 0.00 0.00 2.24
117 118 6.676632 TCTCCTTCCCCAATTACTGAAGATAA 59.323 38.462 10.13 0.00 37.07 1.75
119 120 7.346471 TCCTTCCCCAATTACTGAAGATAAAG 58.654 38.462 10.13 0.00 37.07 1.85
135 136 1.926108 AAAGGGTACGACTGCTCTCT 58.074 50.000 0.00 0.00 0.00 3.10
151 152 3.630168 CTCTCTGAGACTCCCATGAAGA 58.370 50.000 2.58 0.00 0.00 2.87
185 187 2.487265 CCTAACACCAGCACTCCAAAGT 60.487 50.000 0.00 0.00 35.60 2.66
239 241 9.990360 AAAAATATTCCATAGACCAAAACGTTT 57.010 25.926 7.96 7.96 0.00 3.60
264 266 4.010667 ACGCCAATACTCCAACAGTAAA 57.989 40.909 0.00 0.00 41.17 2.01
269 271 6.508777 GCCAATACTCCAACAGTAAACAAAA 58.491 36.000 0.00 0.00 41.17 2.44
300 306 8.911247 AAATAGACGGATTTTTACAAAGATGC 57.089 30.769 0.00 0.00 0.00 3.91
301 307 5.957842 AGACGGATTTTTACAAAGATGCA 57.042 34.783 0.00 0.00 0.00 3.96
302 308 6.515272 AGACGGATTTTTACAAAGATGCAT 57.485 33.333 0.00 0.00 0.00 3.96
417 4339 8.546597 AATTTATGGACCAAAGCATAAACAAC 57.453 30.769 0.00 0.00 33.90 3.32
418 4340 6.656632 TTATGGACCAAAGCATAAACAACA 57.343 33.333 0.00 0.00 0.00 3.33
419 4341 5.543507 ATGGACCAAAGCATAAACAACAA 57.456 34.783 0.00 0.00 0.00 2.83
420 4342 5.344743 TGGACCAAAGCATAAACAACAAA 57.655 34.783 0.00 0.00 0.00 2.83
421 4343 5.923204 TGGACCAAAGCATAAACAACAAAT 58.077 33.333 0.00 0.00 0.00 2.32
422 4344 5.757320 TGGACCAAAGCATAAACAACAAATG 59.243 36.000 0.00 0.00 0.00 2.32
423 4345 5.988561 GGACCAAAGCATAAACAACAAATGA 59.011 36.000 0.00 0.00 0.00 2.57
424 4346 6.481644 GGACCAAAGCATAAACAACAAATGAA 59.518 34.615 0.00 0.00 0.00 2.57
425 4347 7.011857 GGACCAAAGCATAAACAACAAATGAAA 59.988 33.333 0.00 0.00 0.00 2.69
426 4348 8.273780 ACCAAAGCATAAACAACAAATGAAAA 57.726 26.923 0.00 0.00 0.00 2.29
427 4349 8.734386 ACCAAAGCATAAACAACAAATGAAAAA 58.266 25.926 0.00 0.00 0.00 1.94
428 4350 9.224058 CCAAAGCATAAACAACAAATGAAAAAG 57.776 29.630 0.00 0.00 0.00 2.27
429 4351 9.985318 CAAAGCATAAACAACAAATGAAAAAGA 57.015 25.926 0.00 0.00 0.00 2.52
437 4359 9.688592 AAACAACAAATGAAAAAGAAAAATGCA 57.311 22.222 0.00 0.00 0.00 3.96
438 4360 9.857957 AACAACAAATGAAAAAGAAAAATGCAT 57.142 22.222 0.00 0.00 0.00 3.96
447 4369 9.761504 TGAAAAAGAAAAATGCATAGATGAACA 57.238 25.926 0.00 0.00 0.00 3.18
452 4374 9.545105 AAGAAAAATGCATAGATGAACAAAACA 57.455 25.926 0.00 0.00 0.00 2.83
453 4375 9.715121 AGAAAAATGCATAGATGAACAAAACAT 57.285 25.926 0.00 0.00 0.00 2.71
458 4380 9.926158 AATGCATAGATGAACAAAACATAAACA 57.074 25.926 0.00 0.00 0.00 2.83
459 4381 9.926158 ATGCATAGATGAACAAAACATAAACAA 57.074 25.926 0.00 0.00 0.00 2.83
460 4382 9.190858 TGCATAGATGAACAAAACATAAACAAC 57.809 29.630 0.00 0.00 0.00 3.32
461 4383 9.190858 GCATAGATGAACAAAACATAAACAACA 57.809 29.630 0.00 0.00 0.00 3.33
492 4414 9.985730 AAAAAGAAAATGCATAGATGAACAAGA 57.014 25.926 0.00 0.00 0.00 3.02
493 4415 9.985730 AAAAGAAAATGCATAGATGAACAAGAA 57.014 25.926 0.00 0.00 0.00 2.52
494 4416 9.985730 AAAGAAAATGCATAGATGAACAAGAAA 57.014 25.926 0.00 0.00 0.00 2.52
495 4417 9.985730 AAGAAAATGCATAGATGAACAAGAAAA 57.014 25.926 0.00 0.00 0.00 2.29
498 4420 7.766219 AATGCATAGATGAACAAGAAAATGC 57.234 32.000 0.00 0.00 39.08 3.56
499 4421 6.270156 TGCATAGATGAACAAGAAAATGCA 57.730 33.333 2.75 2.75 44.33 3.96
500 4422 6.869695 TGCATAGATGAACAAGAAAATGCAT 58.130 32.000 0.00 0.00 42.39 3.96
501 4423 7.998580 TGCATAGATGAACAAGAAAATGCATA 58.001 30.769 0.00 0.00 42.39 3.14
502 4424 8.132995 TGCATAGATGAACAAGAAAATGCATAG 58.867 33.333 0.00 0.00 42.39 2.23
503 4425 8.133627 GCATAGATGAACAAGAAAATGCATAGT 58.866 33.333 0.00 0.00 38.61 2.12
506 4428 8.114331 AGATGAACAAGAAAATGCATAGTTGA 57.886 30.769 0.00 0.00 0.00 3.18
507 4429 8.579006 AGATGAACAAGAAAATGCATAGTTGAA 58.421 29.630 0.00 0.00 0.00 2.69
508 4430 9.195411 GATGAACAAGAAAATGCATAGTTGAAA 57.805 29.630 0.00 0.00 0.00 2.69
509 4431 8.939201 TGAACAAGAAAATGCATAGTTGAAAA 57.061 26.923 0.00 0.00 0.00 2.29
510 4432 9.376075 TGAACAAGAAAATGCATAGTTGAAAAA 57.624 25.926 0.00 0.00 0.00 1.94
511 4433 9.636965 GAACAAGAAAATGCATAGTTGAAAAAC 57.363 29.630 0.00 0.00 0.00 2.43
512 4434 8.715191 ACAAGAAAATGCATAGTTGAAAAACA 57.285 26.923 0.00 0.00 0.00 2.83
513 4435 9.160496 ACAAGAAAATGCATAGTTGAAAAACAA 57.840 25.926 0.00 0.00 36.02 2.83
514 4436 9.985318 CAAGAAAATGCATAGTTGAAAAACAAA 57.015 25.926 0.00 0.00 40.36 2.83
520 4442 9.986833 AATGCATAGTTGAAAAACAAAAGAAAC 57.013 25.926 0.00 0.00 40.36 2.78
521 4443 7.670916 TGCATAGTTGAAAAACAAAAGAAACG 58.329 30.769 0.00 0.00 40.36 3.60
522 4444 7.329717 TGCATAGTTGAAAAACAAAAGAAACGT 59.670 29.630 0.00 0.00 40.36 3.99
523 4445 7.630606 GCATAGTTGAAAAACAAAAGAAACGTG 59.369 33.333 0.00 0.00 40.36 4.49
524 4446 6.460664 AGTTGAAAAACAAAAGAAACGTGG 57.539 33.333 0.00 0.00 40.36 4.94
525 4447 5.986741 AGTTGAAAAACAAAAGAAACGTGGT 59.013 32.000 0.00 0.00 40.36 4.16
526 4448 6.144886 AGTTGAAAAACAAAAGAAACGTGGTC 59.855 34.615 0.00 0.00 40.36 4.02
527 4449 4.617645 TGAAAAACAAAAGAAACGTGGTCG 59.382 37.500 0.00 0.00 43.34 4.79
528 4450 2.836479 AACAAAAGAAACGTGGTCGG 57.164 45.000 0.00 0.00 41.85 4.79
529 4451 0.379316 ACAAAAGAAACGTGGTCGGC 59.621 50.000 0.00 0.00 41.85 5.54
530 4452 0.378962 CAAAAGAAACGTGGTCGGCA 59.621 50.000 0.00 0.00 41.85 5.69
531 4453 0.661020 AAAAGAAACGTGGTCGGCAG 59.339 50.000 0.00 0.00 41.85 4.85
532 4454 1.164041 AAAGAAACGTGGTCGGCAGG 61.164 55.000 0.00 0.00 41.85 4.85
533 4455 2.029964 GAAACGTGGTCGGCAGGA 59.970 61.111 0.00 0.00 41.85 3.86
534 4456 1.375523 GAAACGTGGTCGGCAGGAT 60.376 57.895 0.00 0.00 41.85 3.24
535 4457 0.953960 GAAACGTGGTCGGCAGGATT 60.954 55.000 0.00 0.00 41.85 3.01
536 4458 0.953960 AAACGTGGTCGGCAGGATTC 60.954 55.000 0.00 0.00 41.85 2.52
537 4459 2.885644 CGTGGTCGGCAGGATTCG 60.886 66.667 0.00 0.00 0.00 3.34
538 4460 2.577059 GTGGTCGGCAGGATTCGA 59.423 61.111 0.00 0.00 0.00 3.71
539 4461 1.079405 GTGGTCGGCAGGATTCGAA 60.079 57.895 0.00 0.00 37.14 3.71
540 4462 1.079405 TGGTCGGCAGGATTCGAAC 60.079 57.895 0.00 0.00 42.73 3.95
541 4463 1.814169 GGTCGGCAGGATTCGAACC 60.814 63.158 0.00 4.22 37.15 3.62
542 4464 1.218316 GTCGGCAGGATTCGAACCT 59.782 57.895 0.00 6.74 37.14 3.50
543 4465 0.391263 GTCGGCAGGATTCGAACCTT 60.391 55.000 14.28 0.00 37.14 3.50
544 4466 1.134907 GTCGGCAGGATTCGAACCTTA 60.135 52.381 14.28 1.99 37.14 2.69
545 4467 1.760613 TCGGCAGGATTCGAACCTTAT 59.239 47.619 14.28 0.00 35.35 1.73
546 4468 1.867233 CGGCAGGATTCGAACCTTATG 59.133 52.381 14.28 7.85 35.35 1.90
547 4469 2.222027 GGCAGGATTCGAACCTTATGG 58.778 52.381 14.28 6.90 35.35 2.74
548 4470 2.158813 GGCAGGATTCGAACCTTATGGA 60.159 50.000 14.28 0.00 35.35 3.41
549 4471 2.872858 GCAGGATTCGAACCTTATGGAC 59.127 50.000 14.28 0.00 35.35 4.02
550 4472 3.467803 CAGGATTCGAACCTTATGGACC 58.532 50.000 14.28 0.00 35.35 4.46
551 4473 3.112263 AGGATTCGAACCTTATGGACCA 58.888 45.455 0.00 0.00 33.55 4.02
552 4474 3.521937 AGGATTCGAACCTTATGGACCAA 59.478 43.478 0.00 0.00 33.55 3.67
553 4475 4.018779 AGGATTCGAACCTTATGGACCAAA 60.019 41.667 0.00 0.00 33.55 3.28
554 4476 4.335594 GGATTCGAACCTTATGGACCAAAG 59.664 45.833 0.00 3.95 37.04 2.77
555 4477 2.706890 TCGAACCTTATGGACCAAAGC 58.293 47.619 0.00 0.00 37.04 3.51
556 4478 2.039216 TCGAACCTTATGGACCAAAGCA 59.961 45.455 0.00 0.00 37.04 3.91
557 4479 3.016736 CGAACCTTATGGACCAAAGCAT 58.983 45.455 0.00 0.00 37.04 3.79
558 4480 4.080807 TCGAACCTTATGGACCAAAGCATA 60.081 41.667 0.00 0.00 37.04 3.14
559 4481 4.638421 CGAACCTTATGGACCAAAGCATAA 59.362 41.667 0.00 0.00 37.04 1.90
560 4482 5.124776 CGAACCTTATGGACCAAAGCATAAA 59.875 40.000 0.00 0.00 37.04 1.40
561 4483 5.914898 ACCTTATGGACCAAAGCATAAAC 57.085 39.130 0.00 0.00 37.04 2.01
562 4484 5.329399 ACCTTATGGACCAAAGCATAAACA 58.671 37.500 0.00 0.00 37.04 2.83
563 4485 5.777732 ACCTTATGGACCAAAGCATAAACAA 59.222 36.000 0.00 0.00 37.04 2.83
564 4486 6.099341 CCTTATGGACCAAAGCATAAACAAC 58.901 40.000 0.00 0.00 34.57 3.32
565 4487 6.295011 CCTTATGGACCAAAGCATAAACAACA 60.295 38.462 0.00 0.00 34.57 3.33
566 4488 5.543507 ATGGACCAAAGCATAAACAACAA 57.456 34.783 0.00 0.00 0.00 2.83
567 4489 5.344743 TGGACCAAAGCATAAACAACAAA 57.655 34.783 0.00 0.00 0.00 2.83
568 4490 5.923204 TGGACCAAAGCATAAACAACAAAT 58.077 33.333 0.00 0.00 0.00 2.32
569 4491 5.757320 TGGACCAAAGCATAAACAACAAATG 59.243 36.000 0.00 0.00 0.00 2.32
570 4492 5.988561 GGACCAAAGCATAAACAACAAATGA 59.011 36.000 0.00 0.00 0.00 2.57
571 4493 6.481644 GGACCAAAGCATAAACAACAAATGAA 59.518 34.615 0.00 0.00 0.00 2.57
572 4494 7.011857 GGACCAAAGCATAAACAACAAATGAAA 59.988 33.333 0.00 0.00 0.00 2.69
573 4495 8.273780 ACCAAAGCATAAACAACAAATGAAAA 57.726 26.923 0.00 0.00 0.00 2.29
574 4496 8.734386 ACCAAAGCATAAACAACAAATGAAAAA 58.266 25.926 0.00 0.00 0.00 1.94
575 4497 9.224058 CCAAAGCATAAACAACAAATGAAAAAG 57.776 29.630 0.00 0.00 0.00 2.27
576 4498 9.985318 CAAAGCATAAACAACAAATGAAAAAGA 57.015 25.926 0.00 0.00 0.00 2.52
584 4506 9.688592 AAACAACAAATGAAAAAGAAAAATGCA 57.311 22.222 0.00 0.00 0.00 3.96
585 4507 9.857957 AACAACAAATGAAAAAGAAAAATGCAT 57.142 22.222 0.00 0.00 0.00 3.96
594 4516 9.761504 TGAAAAAGAAAAATGCATAGATGAACA 57.238 25.926 0.00 0.00 0.00 3.18
599 4521 9.545105 AAGAAAAATGCATAGATGAACAAAACA 57.455 25.926 0.00 0.00 0.00 2.83
600 4522 9.715121 AGAAAAATGCATAGATGAACAAAACAT 57.285 25.926 0.00 0.00 0.00 2.71
605 4527 9.926158 AATGCATAGATGAACAAAACATAAACA 57.074 25.926 0.00 0.00 0.00 2.83
606 4528 9.926158 ATGCATAGATGAACAAAACATAAACAA 57.074 25.926 0.00 0.00 0.00 2.83
607 4529 9.190858 TGCATAGATGAACAAAACATAAACAAC 57.809 29.630 0.00 0.00 0.00 3.32
608 4530 9.190858 GCATAGATGAACAAAACATAAACAACA 57.809 29.630 0.00 0.00 0.00 3.33
640 4562 9.545105 AAAAGAAAATGCATAGATGAACAAACA 57.455 25.926 0.00 0.00 0.00 2.83
641 4563 9.715121 AAAGAAAATGCATAGATGAACAAACAT 57.285 25.926 0.00 0.00 0.00 2.71
646 4568 9.926158 AAATGCATAGATGAACAAACATAAACA 57.074 25.926 0.00 0.00 0.00 2.83
647 4569 9.926158 AATGCATAGATGAACAAACATAAACAA 57.074 25.926 0.00 0.00 0.00 2.83
648 4570 8.741101 TGCATAGATGAACAAACATAAACAAC 57.259 30.769 0.00 0.00 0.00 3.32
649 4571 8.355913 TGCATAGATGAACAAACATAAACAACA 58.644 29.630 0.00 0.00 0.00 3.33
650 4572 9.190858 GCATAGATGAACAAACATAAACAACAA 57.809 29.630 0.00 0.00 0.00 2.83
688 4610 9.986833 AATGCATAGTTGAAAAACAAAAGAAAC 57.013 25.926 0.00 0.00 40.36 2.78
689 4611 7.670916 TGCATAGTTGAAAAACAAAAGAAACG 58.329 30.769 0.00 0.00 40.36 3.60
690 4612 7.329717 TGCATAGTTGAAAAACAAAAGAAACGT 59.670 29.630 0.00 0.00 40.36 3.99
691 4613 7.630606 GCATAGTTGAAAAACAAAAGAAACGTG 59.369 33.333 0.00 0.00 40.36 4.49
692 4614 6.460664 AGTTGAAAAACAAAAGAAACGTGG 57.539 33.333 0.00 0.00 40.36 4.94
693 4615 5.986741 AGTTGAAAAACAAAAGAAACGTGGT 59.013 32.000 0.00 0.00 40.36 4.16
694 4616 6.144886 AGTTGAAAAACAAAAGAAACGTGGTC 59.855 34.615 0.00 0.00 40.36 4.02
695 4617 4.617645 TGAAAAACAAAAGAAACGTGGTCG 59.382 37.500 0.00 0.00 43.34 4.79
696 4618 2.836479 AACAAAAGAAACGTGGTCGG 57.164 45.000 0.00 0.00 41.85 4.79
697 4619 0.379316 ACAAAAGAAACGTGGTCGGC 59.621 50.000 0.00 0.00 41.85 5.54
698 4620 0.378962 CAAAAGAAACGTGGTCGGCA 59.621 50.000 0.00 0.00 41.85 5.69
699 4621 0.661020 AAAAGAAACGTGGTCGGCAG 59.339 50.000 0.00 0.00 41.85 4.85
700 4622 1.164041 AAAGAAACGTGGTCGGCAGG 61.164 55.000 0.00 0.00 41.85 4.85
701 4623 2.029964 GAAACGTGGTCGGCAGGA 59.970 61.111 0.00 0.00 41.85 3.86
702 4624 1.375523 GAAACGTGGTCGGCAGGAT 60.376 57.895 0.00 0.00 41.85 3.24
703 4625 0.953960 GAAACGTGGTCGGCAGGATT 60.954 55.000 0.00 0.00 41.85 3.01
704 4626 0.953960 AAACGTGGTCGGCAGGATTC 60.954 55.000 0.00 0.00 41.85 2.52
705 4627 2.885644 CGTGGTCGGCAGGATTCG 60.886 66.667 0.00 0.00 0.00 3.34
706 4628 2.577059 GTGGTCGGCAGGATTCGA 59.423 61.111 0.00 0.00 0.00 3.71
707 4629 1.079405 GTGGTCGGCAGGATTCGAA 60.079 57.895 0.00 0.00 37.14 3.71
708 4630 1.079405 TGGTCGGCAGGATTCGAAC 60.079 57.895 0.00 0.00 42.73 3.95
709 4631 1.814169 GGTCGGCAGGATTCGAACC 60.814 63.158 0.00 4.22 37.15 3.62
710 4632 1.218316 GTCGGCAGGATTCGAACCT 59.782 57.895 0.00 6.74 37.14 3.50
711 4633 0.391263 GTCGGCAGGATTCGAACCTT 60.391 55.000 14.28 0.00 37.14 3.50
712 4634 1.134907 GTCGGCAGGATTCGAACCTTA 60.135 52.381 14.28 1.99 37.14 2.69
713 4635 1.760613 TCGGCAGGATTCGAACCTTAT 59.239 47.619 14.28 0.00 35.35 1.73
714 4636 1.867233 CGGCAGGATTCGAACCTTATG 59.133 52.381 14.28 7.85 35.35 1.90
715 4637 2.222027 GGCAGGATTCGAACCTTATGG 58.778 52.381 14.28 6.90 35.35 2.74
716 4638 2.158813 GGCAGGATTCGAACCTTATGGA 60.159 50.000 14.28 0.00 35.35 3.41
717 4639 2.872858 GCAGGATTCGAACCTTATGGAC 59.127 50.000 14.28 0.00 35.35 4.02
718 4640 3.467803 CAGGATTCGAACCTTATGGACC 58.532 50.000 14.28 0.00 35.35 4.46
719 4641 3.112263 AGGATTCGAACCTTATGGACCA 58.888 45.455 0.00 0.00 33.55 4.02
720 4642 3.521937 AGGATTCGAACCTTATGGACCAA 59.478 43.478 0.00 0.00 33.55 3.67
721 4643 4.018779 AGGATTCGAACCTTATGGACCAAA 60.019 41.667 0.00 0.00 33.55 3.28
722 4644 4.335594 GGATTCGAACCTTATGGACCAAAG 59.664 45.833 0.00 3.95 37.04 2.77
723 4645 2.706890 TCGAACCTTATGGACCAAAGC 58.293 47.619 0.00 0.00 37.04 3.51
724 4646 2.039216 TCGAACCTTATGGACCAAAGCA 59.961 45.455 0.00 0.00 37.04 3.91
725 4647 3.016736 CGAACCTTATGGACCAAAGCAT 58.983 45.455 0.00 0.00 37.04 3.79
726 4648 4.080807 TCGAACCTTATGGACCAAAGCATA 60.081 41.667 0.00 0.00 37.04 3.14
727 4649 4.638421 CGAACCTTATGGACCAAAGCATAA 59.362 41.667 0.00 0.00 37.04 1.90
728 4650 5.124776 CGAACCTTATGGACCAAAGCATAAA 59.875 40.000 0.00 0.00 37.04 1.40
729 4651 5.914898 ACCTTATGGACCAAAGCATAAAC 57.085 39.130 0.00 0.00 37.04 2.01
730 4652 5.329399 ACCTTATGGACCAAAGCATAAACA 58.671 37.500 0.00 0.00 37.04 2.83
731 4653 5.777732 ACCTTATGGACCAAAGCATAAACAA 59.222 36.000 0.00 0.00 37.04 2.83
732 4654 6.099341 CCTTATGGACCAAAGCATAAACAAC 58.901 40.000 0.00 0.00 34.57 3.32
733 4655 6.295011 CCTTATGGACCAAAGCATAAACAACA 60.295 38.462 0.00 0.00 34.57 3.33
734 4656 5.543507 ATGGACCAAAGCATAAACAACAA 57.456 34.783 0.00 0.00 0.00 2.83
735 4657 5.344743 TGGACCAAAGCATAAACAACAAA 57.655 34.783 0.00 0.00 0.00 2.83
736 4658 5.923204 TGGACCAAAGCATAAACAACAAAT 58.077 33.333 0.00 0.00 0.00 2.32
737 4659 5.757320 TGGACCAAAGCATAAACAACAAATG 59.243 36.000 0.00 0.00 0.00 2.32
738 4660 5.988561 GGACCAAAGCATAAACAACAAATGA 59.011 36.000 0.00 0.00 0.00 2.57
739 4661 6.481644 GGACCAAAGCATAAACAACAAATGAA 59.518 34.615 0.00 0.00 0.00 2.57
740 4662 7.011857 GGACCAAAGCATAAACAACAAATGAAA 59.988 33.333 0.00 0.00 0.00 2.69
741 4663 8.273780 ACCAAAGCATAAACAACAAATGAAAA 57.726 26.923 0.00 0.00 0.00 2.29
742 4664 8.734386 ACCAAAGCATAAACAACAAATGAAAAA 58.266 25.926 0.00 0.00 0.00 1.94
743 4665 9.224058 CCAAAGCATAAACAACAAATGAAAAAG 57.776 29.630 0.00 0.00 0.00 2.27
744 4666 9.985318 CAAAGCATAAACAACAAATGAAAAAGA 57.015 25.926 0.00 0.00 0.00 2.52
752 4674 9.688592 AAACAACAAATGAAAAAGAAAAATGCA 57.311 22.222 0.00 0.00 0.00 3.96
753 4675 9.857957 AACAACAAATGAAAAAGAAAAATGCAT 57.142 22.222 0.00 0.00 0.00 3.96
816 4739 9.768662 ATGCATAGATGAAAAACAAAAGAAACT 57.231 25.926 0.00 0.00 0.00 2.66
843 4769 2.508439 GGATTCGAACCTGCGCGA 60.508 61.111 12.10 0.00 34.32 5.87
869 4796 4.785346 AGCCCACATGATTTCTAGTCAT 57.215 40.909 0.00 0.00 36.79 3.06
920 4847 8.057742 CACTTTTGTGTCTATTTGATGTTTTGC 58.942 33.333 0.00 0.00 44.94 3.68
922 4849 4.793071 TGTGTCTATTTGATGTTTTGCCG 58.207 39.130 0.00 0.00 0.00 5.69
924 4851 5.219633 GTGTCTATTTGATGTTTTGCCGTT 58.780 37.500 0.00 0.00 0.00 4.44
925 4852 6.017026 TGTGTCTATTTGATGTTTTGCCGTTA 60.017 34.615 0.00 0.00 0.00 3.18
926 4853 6.304683 GTGTCTATTTGATGTTTTGCCGTTAC 59.695 38.462 0.00 0.00 0.00 2.50
928 4855 7.027161 GTCTATTTGATGTTTTGCCGTTACAT 58.973 34.615 0.00 0.00 35.33 2.29
929 4856 8.178964 GTCTATTTGATGTTTTGCCGTTACATA 58.821 33.333 0.00 0.00 32.94 2.29
930 4857 8.898761 TCTATTTGATGTTTTGCCGTTACATAT 58.101 29.630 0.00 0.00 32.94 1.78
933 4860 5.564768 TGATGTTTTGCCGTTACATATTCG 58.435 37.500 0.00 0.00 32.94 3.34
934 4861 3.749404 TGTTTTGCCGTTACATATTCGC 58.251 40.909 0.00 0.00 0.00 4.70
937 4865 1.923899 TGCCGTTACATATTCGCGAA 58.076 45.000 25.66 25.66 0.00 4.70
957 4885 4.201871 CGAAAGCGTGCCCATTATTAAGAA 60.202 41.667 0.00 0.00 0.00 2.52
967 4895 4.275936 CCCATTATTAAGAAGACAAGGCCG 59.724 45.833 0.00 0.00 0.00 6.13
990 4918 3.562973 TCCTCTACCGCTGTAACTTATCG 59.437 47.826 0.00 0.00 0.00 2.92
1008 4936 1.944676 GTCGAAGAGTATGGCGGCG 60.945 63.158 0.51 0.51 36.95 6.46
1143 5075 2.120312 CCCTTTTACCCTCTCTCTCCC 58.880 57.143 0.00 0.00 0.00 4.30
1383 5315 3.402186 CTGTGTTCCAGGTTCTGCA 57.598 52.632 0.00 0.00 37.54 4.41
1388 5320 3.580895 TGTGTTCCAGGTTCTGCATACTA 59.419 43.478 0.00 0.00 0.00 1.82
1589 5521 9.930693 CTGACTGTAAACCTAAGATTAGAAACT 57.069 33.333 1.08 0.00 32.47 2.66
1594 5526 7.761249 TGTAAACCTAAGATTAGAAACTACCGC 59.239 37.037 1.08 0.00 32.47 5.68
1608 5540 0.604073 TACCGCGTGACCTGATTGAA 59.396 50.000 4.92 0.00 0.00 2.69
1709 5646 8.228464 GTCATTACTAGTAGTTTCTTGTTTGGC 58.772 37.037 8.40 0.00 0.00 4.52
1738 5675 1.109296 CAACGTTTCGCTTGGTTTCG 58.891 50.000 0.00 0.00 0.00 3.46
1787 5724 5.807520 ACAGTCAGAGTATTTTGCGTATCAG 59.192 40.000 0.00 0.00 0.00 2.90
1799 5736 1.846782 GCGTATCAGTTGTAGCTCACG 59.153 52.381 0.00 0.00 0.00 4.35
2007 5945 2.813908 GCGTACCCAGTGCCGAAG 60.814 66.667 0.00 0.00 0.00 3.79
2134 6072 1.257743 TGGAGAGACTACCACTGCAC 58.742 55.000 0.00 0.00 0.00 4.57
2327 6267 4.309933 ACTTGGCATTAAAAGAAGCAAGC 58.690 39.130 0.00 0.00 0.00 4.01
2390 6330 7.125792 ACTTGTTAAGAGATAATCGGTGGAT 57.874 36.000 0.00 0.00 0.00 3.41
2552 6496 6.979817 TCTTGTTTCATTTGGTGAATGTTCAG 59.020 34.615 0.00 0.00 45.77 3.02
2607 6551 6.019748 AGACAGATAGAGAAAAGGGAGACAA 58.980 40.000 0.00 0.00 0.00 3.18
2644 6588 5.843421 AGTGGAGAGGCTGATACTCATATTT 59.157 40.000 0.00 0.00 37.43 1.40
2718 6662 7.171167 GTGTTTAACTTCCCTCTTCTGTTAGAC 59.829 40.741 0.00 0.00 32.47 2.59
2779 6723 2.099652 TAGATCCCAATGCCGGCTCG 62.100 60.000 29.70 15.53 0.00 5.03
2836 6780 6.492429 TGTACTAGTAAGCATATAGGTGGTGG 59.508 42.308 3.61 0.00 0.00 4.61
2846 6790 3.959495 ATAGGTGGTGGATCAGCAAAT 57.041 42.857 1.20 0.00 43.50 2.32
2992 6938 3.830178 TCAAGCTACTTACAGTGCCAGTA 59.170 43.478 0.00 0.00 0.00 2.74
3103 7058 1.649664 GTCTGCCACTACTGCATCTG 58.350 55.000 0.00 0.00 38.22 2.90
3336 7292 5.181009 TCACTAGTCACTACGCTAGCTTAA 58.819 41.667 13.93 0.00 38.50 1.85
3513 7469 4.717233 TGCTTTTGCCCAATATACAGTG 57.283 40.909 0.00 0.00 46.87 3.66
3624 7581 3.031736 TGGTAGATGTTACTCCCTCTGC 58.968 50.000 0.00 0.00 0.00 4.26
4054 8040 1.808411 CAGCTCTTAAACGCCCTGAA 58.192 50.000 0.00 0.00 0.00 3.02
4159 8145 4.106197 GAGTCGTAGCTGATACCAAGTTG 58.894 47.826 0.00 0.00 0.00 3.16
4182 8168 8.684520 GTTGATACCATGTAGTACTCTGTAAGT 58.315 37.037 0.00 0.00 42.33 2.24
4195 8181 8.822805 AGTACTCTGTAAGTGGAATATGGAAAA 58.177 33.333 0.00 0.00 39.11 2.29
4334 8320 8.851541 TGGTTTTTATTACTTCCGTGTATCTT 57.148 30.769 0.00 0.00 0.00 2.40
4335 8321 8.938906 TGGTTTTTATTACTTCCGTGTATCTTC 58.061 33.333 0.00 0.00 0.00 2.87
4336 8322 9.159364 GGTTTTTATTACTTCCGTGTATCTTCT 57.841 33.333 0.00 0.00 0.00 2.85
4340 8329 6.777213 ATTACTTCCGTGTATCTTCTCTGT 57.223 37.500 0.00 0.00 0.00 3.41
4422 8411 5.854010 TTTTGTGTGTGCCCTAAAATACA 57.146 34.783 0.00 0.00 0.00 2.29
4570 8563 3.424703 CTCCAGGGACACACATGATTTT 58.575 45.455 0.00 0.00 0.00 1.82
4602 8596 8.027524 AGATGTAGACATGTTCCTATCAACAT 57.972 34.615 0.00 0.28 46.00 2.71
4603 8597 9.147732 AGATGTAGACATGTTCCTATCAACATA 57.852 33.333 0.00 0.00 43.75 2.29
4604 8598 9.197694 GATGTAGACATGTTCCTATCAACATAC 57.802 37.037 0.00 0.00 43.75 2.39
4605 8599 8.306313 TGTAGACATGTTCCTATCAACATACT 57.694 34.615 0.00 5.01 43.75 2.12
4606 8600 8.758829 TGTAGACATGTTCCTATCAACATACTT 58.241 33.333 0.00 0.00 43.75 2.24
4607 8601 9.250624 GTAGACATGTTCCTATCAACATACTTC 57.749 37.037 0.00 0.00 43.75 3.01
4608 8602 7.275920 AGACATGTTCCTATCAACATACTTCC 58.724 38.462 0.00 0.00 43.75 3.46
4609 8603 7.126421 AGACATGTTCCTATCAACATACTTCCT 59.874 37.037 0.00 0.00 43.75 3.36
4610 8604 7.275920 ACATGTTCCTATCAACATACTTCCTC 58.724 38.462 0.00 0.00 43.75 3.71
4611 8605 6.235231 TGTTCCTATCAACATACTTCCTCC 57.765 41.667 0.00 0.00 31.08 4.30
4612 8606 5.163447 TGTTCCTATCAACATACTTCCTCCG 60.163 44.000 0.00 0.00 31.08 4.63
4613 8607 4.543689 TCCTATCAACATACTTCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
4614 8608 4.960469 TCCTATCAACATACTTCCTCCGTT 59.040 41.667 0.00 0.00 0.00 4.44
4615 8609 5.068723 TCCTATCAACATACTTCCTCCGTTC 59.931 44.000 0.00 0.00 0.00 3.95
4616 8610 3.604875 TCAACATACTTCCTCCGTTCC 57.395 47.619 0.00 0.00 0.00 3.62
4617 8611 3.170717 TCAACATACTTCCTCCGTTCCT 58.829 45.455 0.00 0.00 0.00 3.36
4618 8612 4.346730 TCAACATACTTCCTCCGTTCCTA 58.653 43.478 0.00 0.00 0.00 2.94
4619 8613 4.773674 TCAACATACTTCCTCCGTTCCTAA 59.226 41.667 0.00 0.00 0.00 2.69
4620 8614 5.246656 TCAACATACTTCCTCCGTTCCTAAA 59.753 40.000 0.00 0.00 0.00 1.85
4621 8615 5.952347 ACATACTTCCTCCGTTCCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
4622 8616 5.671493 ACATACTTCCTCCGTTCCTAAATG 58.329 41.667 0.00 0.00 0.00 2.32
4623 8617 5.189145 ACATACTTCCTCCGTTCCTAAATGT 59.811 40.000 0.00 0.00 0.00 2.71
4624 8618 6.381994 ACATACTTCCTCCGTTCCTAAATGTA 59.618 38.462 0.00 0.00 0.00 2.29
4625 8619 5.750352 ACTTCCTCCGTTCCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
4626 8620 5.731591 ACTTCCTCCGTTCCTAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
4627 8621 5.247792 ACTTCCTCCGTTCCTAAATGTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
4628 8622 5.334724 TCCTCCGTTCCTAAATGTAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
4629 8623 5.021458 TCCTCCGTTCCTAAATGTAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
4630 8624 5.482878 TCCTCCGTTCCTAAATGTAAGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
4631 8625 6.013984 TCCTCCGTTCCTAAATGTAAGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
4632 8626 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
4633 8627 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
4634 8628 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
4635 8629 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
4636 8630 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
4637 8631 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
4638 8632 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
4644 8638 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
4645 8639 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
4646 8640 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
4647 8641 9.256228 TGTAAGTCTTTGTAGAGATTCCACTAT 57.744 33.333 0.00 0.00 0.00 2.12
4648 8642 9.522804 GTAAGTCTTTGTAGAGATTCCACTATG 57.477 37.037 0.00 0.00 0.00 2.23
4649 8643 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
4650 8644 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
4651 8645 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
4652 8646 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
4653 8647 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
4654 8648 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
4655 8649 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
4656 8650 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
4657 8651 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
4658 8652 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
4659 8653 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
4660 8654 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
4661 8655 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
4662 8656 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
4663 8657 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
4665 8659 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
4666 8660 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
4667 8661 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
4668 8662 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
4669 8663 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
4670 8664 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
4671 8665 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
4672 8666 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
4673 8667 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
4674 8668 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
4675 8669 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
4676 8670 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
4677 8671 8.576442 CCACATACGGATGTATATAGATGCATA 58.424 37.037 14.23 1.52 44.82 3.14
4705 8699 8.744568 AAGAGTAGATTCATTCATTTTCCTCC 57.255 34.615 0.00 0.00 0.00 4.30
4706 8700 6.989169 AGAGTAGATTCATTCATTTTCCTCCG 59.011 38.462 0.00 0.00 0.00 4.63
4707 8701 6.653989 AGTAGATTCATTCATTTTCCTCCGT 58.346 36.000 0.00 0.00 0.00 4.69
4708 8702 7.792032 AGTAGATTCATTCATTTTCCTCCGTA 58.208 34.615 0.00 0.00 0.00 4.02
4709 8703 8.432805 AGTAGATTCATTCATTTTCCTCCGTAT 58.567 33.333 0.00 0.00 0.00 3.06
4710 8704 7.502120 AGATTCATTCATTTTCCTCCGTATG 57.498 36.000 0.00 0.00 0.00 2.39
4711 8705 7.056635 AGATTCATTCATTTTCCTCCGTATGT 58.943 34.615 0.00 0.00 0.00 2.29
4712 8706 8.210946 AGATTCATTCATTTTCCTCCGTATGTA 58.789 33.333 0.00 0.00 0.00 2.29
4713 8707 7.786178 TTCATTCATTTTCCTCCGTATGTAG 57.214 36.000 0.00 0.00 0.00 2.74
4714 8708 6.884832 TCATTCATTTTCCTCCGTATGTAGT 58.115 36.000 0.00 0.00 0.00 2.73
4715 8709 6.984474 TCATTCATTTTCCTCCGTATGTAGTC 59.016 38.462 0.00 0.00 0.00 2.59
4716 8710 5.272283 TCATTTTCCTCCGTATGTAGTCC 57.728 43.478 0.00 0.00 0.00 3.85
4717 8711 4.712829 TCATTTTCCTCCGTATGTAGTCCA 59.287 41.667 0.00 0.00 0.00 4.02
4718 8712 4.460948 TTTTCCTCCGTATGTAGTCCAC 57.539 45.455 0.00 0.00 0.00 4.02
4719 8713 2.062971 TCCTCCGTATGTAGTCCACC 57.937 55.000 0.00 0.00 0.00 4.61
4720 8714 1.567649 TCCTCCGTATGTAGTCCACCT 59.432 52.381 0.00 0.00 0.00 4.00
4721 8715 2.779430 TCCTCCGTATGTAGTCCACCTA 59.221 50.000 0.00 0.00 0.00 3.08
4722 8716 3.147629 CCTCCGTATGTAGTCCACCTAG 58.852 54.545 0.00 0.00 0.00 3.02
4723 8717 3.434739 CCTCCGTATGTAGTCCACCTAGT 60.435 52.174 0.00 0.00 0.00 2.57
4724 8718 4.202398 CCTCCGTATGTAGTCCACCTAGTA 60.202 50.000 0.00 0.00 0.00 1.82
4725 8719 4.965814 TCCGTATGTAGTCCACCTAGTAG 58.034 47.826 0.00 0.00 0.00 2.57
4726 8720 4.655649 TCCGTATGTAGTCCACCTAGTAGA 59.344 45.833 0.00 0.00 0.00 2.59
4727 8721 5.130975 TCCGTATGTAGTCCACCTAGTAGAA 59.869 44.000 0.00 0.00 0.00 2.10
4728 8722 6.002704 CCGTATGTAGTCCACCTAGTAGAAT 58.997 44.000 0.00 0.00 0.00 2.40
4729 8723 6.149142 CCGTATGTAGTCCACCTAGTAGAATC 59.851 46.154 0.00 0.00 0.00 2.52
4730 8724 6.935771 CGTATGTAGTCCACCTAGTAGAATCT 59.064 42.308 0.00 0.00 0.00 2.40
4731 8725 7.118101 CGTATGTAGTCCACCTAGTAGAATCTC 59.882 44.444 0.00 0.00 0.00 2.75
4732 8726 6.578313 TGTAGTCCACCTAGTAGAATCTCT 57.422 41.667 0.00 0.00 0.00 3.10
4733 8727 7.687383 TGTAGTCCACCTAGTAGAATCTCTA 57.313 40.000 0.00 0.00 0.00 2.43
4876 8871 1.400846 CGCTAGTTTGCCTCGTCTCTA 59.599 52.381 0.00 0.00 0.00 2.43
4967 8983 5.528690 AGTTACAAGTTTTCGGTTAGGGTTC 59.471 40.000 0.00 0.00 0.00 3.62
4968 8984 4.160642 ACAAGTTTTCGGTTAGGGTTCT 57.839 40.909 0.00 0.00 0.00 3.01
4970 8986 4.577693 ACAAGTTTTCGGTTAGGGTTCTTC 59.422 41.667 0.00 0.00 0.00 2.87
4972 8988 5.045012 AGTTTTCGGTTAGGGTTCTTCTT 57.955 39.130 0.00 0.00 0.00 2.52
4973 8989 4.820173 AGTTTTCGGTTAGGGTTCTTCTTG 59.180 41.667 0.00 0.00 0.00 3.02
4975 8991 1.002773 TCGGTTAGGGTTCTTCTTGCC 59.997 52.381 0.00 0.00 0.00 4.52
4976 8992 1.003233 CGGTTAGGGTTCTTCTTGCCT 59.997 52.381 0.00 0.00 0.00 4.75
4977 8993 2.235402 CGGTTAGGGTTCTTCTTGCCTA 59.765 50.000 0.00 0.00 0.00 3.93
4978 8994 3.679083 CGGTTAGGGTTCTTCTTGCCTAG 60.679 52.174 0.00 0.00 0.00 3.02
5010 9027 0.880278 GCGGCGGCTTTCTGATGATA 60.880 55.000 9.78 0.00 35.83 2.15
5020 9037 7.570324 GCGGCTTTCTGATGATAGAATAAGTTC 60.570 40.741 0.00 0.00 36.63 3.01
5022 9039 7.936301 GGCTTTCTGATGATAGAATAAGTTCCT 59.064 37.037 0.00 0.00 36.63 3.36
5028 9045 6.491745 TGATGATAGAATAAGTTCCTCTCGCT 59.508 38.462 0.00 0.00 34.81 4.93
5035 9052 1.140804 GTTCCTCTCGCTCAGCCTC 59.859 63.158 0.00 0.00 0.00 4.70
5037 9054 4.567385 CCTCTCGCTCAGCCTCGC 62.567 72.222 0.00 0.00 0.00 5.03
5055 9072 2.754658 CCCGACGGTGCCTCTAGT 60.755 66.667 13.94 0.00 0.00 2.57
5058 9075 1.585006 CGACGGTGCCTCTAGTGTT 59.415 57.895 0.00 0.00 0.00 3.32
5062 9079 0.732880 CGGTGCCTCTAGTGTTGTCG 60.733 60.000 0.00 0.00 0.00 4.35
5065 9082 2.415625 GGTGCCTCTAGTGTTGTCGTAG 60.416 54.545 0.00 0.00 0.00 3.51
5069 9086 0.806868 TCTAGTGTTGTCGTAGGGCG 59.193 55.000 0.00 0.00 43.01 6.13
5075 9092 3.869473 TTGTCGTAGGGCGGTGTGC 62.869 63.158 0.00 0.00 45.38 4.57
5087 9104 0.037882 CGGTGTGCAGATGTGTCTCT 60.038 55.000 0.00 0.00 30.42 3.10
5091 9108 1.966354 TGTGCAGATGTGTCTCTGACT 59.034 47.619 5.31 0.00 44.48 3.41
5093 9110 1.966354 TGCAGATGTGTCTCTGACTGT 59.034 47.619 5.31 0.00 44.48 3.55
5106 9123 3.579709 TCTGACTGTTCTTGCGAGATTC 58.420 45.455 3.98 2.26 0.00 2.52
5112 9129 2.159435 TGTTCTTGCGAGATTCGATCGA 60.159 45.455 15.15 15.15 43.74 3.59
5118 9135 1.334994 CGAGATTCGATCGATGCTGG 58.665 55.000 20.18 15.57 43.74 4.85
5125 9142 1.476488 TCGATCGATGCTGGTCTTTGA 59.524 47.619 15.15 0.00 0.00 2.69
5142 9159 6.101997 GTCTTTGATGGATTTGTTTGGATCC 58.898 40.000 4.20 4.20 41.78 3.36
5159 9176 4.466370 TGGATCCAGTCTATGTTCGTCTTT 59.534 41.667 11.44 0.00 0.00 2.52
5160 9177 4.806247 GGATCCAGTCTATGTTCGTCTTTG 59.194 45.833 6.95 0.00 0.00 2.77
5163 9180 5.607477 TCCAGTCTATGTTCGTCTTTGTTT 58.393 37.500 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.652148 CGTTTTCGCGACGGCATTTG 61.652 55.000 9.15 0.00 39.92 2.32
1 2 1.439693 CGTTTTCGCGACGGCATTT 60.440 52.632 9.15 0.00 39.92 2.32
2 3 2.172419 CGTTTTCGCGACGGCATT 59.828 55.556 9.15 0.00 39.92 3.56
7 8 2.490697 TTTAATCCGTTTTCGCGACG 57.509 45.000 9.15 10.55 42.58 5.12
8 9 6.017325 ACTATTTTTAATCCGTTTTCGCGAC 58.983 36.000 9.15 0.00 42.58 5.19
9 10 6.168164 ACTATTTTTAATCCGTTTTCGCGA 57.832 33.333 3.71 3.71 42.58 5.87
10 11 6.842081 AACTATTTTTAATCCGTTTTCGCG 57.158 33.333 0.00 0.00 42.58 5.87
32 33 9.116067 GCACTGGTATCATAAGGTGTTATAAAA 57.884 33.333 0.00 0.00 0.00 1.52
33 34 8.268605 TGCACTGGTATCATAAGGTGTTATAAA 58.731 33.333 0.00 0.00 0.00 1.40
34 35 7.797062 TGCACTGGTATCATAAGGTGTTATAA 58.203 34.615 0.00 0.00 0.00 0.98
35 36 7.368198 TGCACTGGTATCATAAGGTGTTATA 57.632 36.000 0.00 0.00 0.00 0.98
36 37 6.247229 TGCACTGGTATCATAAGGTGTTAT 57.753 37.500 0.00 0.00 0.00 1.89
37 38 5.685520 TGCACTGGTATCATAAGGTGTTA 57.314 39.130 0.00 0.00 0.00 2.41
38 39 4.568072 TGCACTGGTATCATAAGGTGTT 57.432 40.909 0.00 0.00 0.00 3.32
39 40 4.778213 ATGCACTGGTATCATAAGGTGT 57.222 40.909 0.00 0.00 0.00 4.16
40 41 6.054941 TGTAATGCACTGGTATCATAAGGTG 58.945 40.000 0.00 0.00 0.00 4.00
41 42 6.247229 TGTAATGCACTGGTATCATAAGGT 57.753 37.500 0.00 0.00 0.00 3.50
42 43 7.137490 CATGTAATGCACTGGTATCATAAGG 57.863 40.000 0.00 0.00 37.62 2.69
78 79 7.704727 TGGGGAAGGAGAGTTAATATTGAAAA 58.295 34.615 0.00 0.00 0.00 2.29
109 110 3.767673 AGCAGTCGTACCCTTTATCTTCA 59.232 43.478 0.00 0.00 0.00 3.02
117 118 1.178276 CAGAGAGCAGTCGTACCCTT 58.822 55.000 0.00 0.00 0.00 3.95
119 120 0.736053 CTCAGAGAGCAGTCGTACCC 59.264 60.000 0.00 0.00 0.00 3.69
135 136 1.137675 CGCATCTTCATGGGAGTCTCA 59.862 52.381 0.00 0.00 44.08 3.27
151 152 2.094752 GGTGTTAGGAATGTTTGCGCAT 60.095 45.455 12.75 0.00 0.00 4.73
236 238 4.023878 TGTTGGAGTATTGGCGTTACAAAC 60.024 41.667 0.39 0.00 33.48 2.93
239 241 3.244284 ACTGTTGGAGTATTGGCGTTACA 60.244 43.478 0.39 0.00 30.86 2.41
284 286 9.585099 TCCATAACATGCATCTTTGTAAAAATC 57.415 29.630 0.00 0.00 0.00 2.17
300 306 9.820725 ATTCCATGTATTTTGTTCCATAACATG 57.179 29.630 0.00 0.00 44.85 3.21
403 4325 9.985318 TCTTTTTCATTTGTTGTTTATGCTTTG 57.015 25.926 0.00 0.00 0.00 2.77
411 4333 9.688592 TGCATTTTTCTTTTTCATTTGTTGTTT 57.311 22.222 0.00 0.00 0.00 2.83
412 4334 9.857957 ATGCATTTTTCTTTTTCATTTGTTGTT 57.142 22.222 0.00 0.00 0.00 2.83
421 4343 9.761504 TGTTCATCTATGCATTTTTCTTTTTCA 57.238 25.926 3.54 0.00 0.00 2.69
426 4348 9.545105 TGTTTTGTTCATCTATGCATTTTTCTT 57.455 25.926 3.54 0.00 0.00 2.52
427 4349 9.715121 ATGTTTTGTTCATCTATGCATTTTTCT 57.285 25.926 3.54 0.00 0.00 2.52
432 4354 9.926158 TGTTTATGTTTTGTTCATCTATGCATT 57.074 25.926 3.54 0.00 0.00 3.56
433 4355 9.926158 TTGTTTATGTTTTGTTCATCTATGCAT 57.074 25.926 3.79 3.79 0.00 3.96
434 4356 9.190858 GTTGTTTATGTTTTGTTCATCTATGCA 57.809 29.630 0.00 0.00 0.00 3.96
435 4357 9.190858 TGTTGTTTATGTTTTGTTCATCTATGC 57.809 29.630 0.00 0.00 0.00 3.14
466 4388 9.985730 TCTTGTTCATCTATGCATTTTCTTTTT 57.014 25.926 3.54 0.00 0.00 1.94
467 4389 9.985730 TTCTTGTTCATCTATGCATTTTCTTTT 57.014 25.926 3.54 0.00 0.00 2.27
468 4390 9.985730 TTTCTTGTTCATCTATGCATTTTCTTT 57.014 25.926 3.54 0.00 0.00 2.52
469 4391 9.985730 TTTTCTTGTTCATCTATGCATTTTCTT 57.014 25.926 3.54 0.00 0.00 2.52
472 4394 8.662141 GCATTTTCTTGTTCATCTATGCATTTT 58.338 29.630 3.54 0.00 37.62 1.82
473 4395 7.820386 TGCATTTTCTTGTTCATCTATGCATTT 59.180 29.630 3.54 0.00 41.31 2.32
474 4396 7.324935 TGCATTTTCTTGTTCATCTATGCATT 58.675 30.769 3.54 0.00 41.31 3.56
475 4397 6.869695 TGCATTTTCTTGTTCATCTATGCAT 58.130 32.000 3.79 3.79 41.31 3.96
476 4398 6.270156 TGCATTTTCTTGTTCATCTATGCA 57.730 33.333 0.00 0.00 43.20 3.96
477 4399 8.133627 ACTATGCATTTTCTTGTTCATCTATGC 58.866 33.333 3.54 0.00 38.04 3.14
480 4402 9.230122 TCAACTATGCATTTTCTTGTTCATCTA 57.770 29.630 3.54 0.00 0.00 1.98
481 4403 8.114331 TCAACTATGCATTTTCTTGTTCATCT 57.886 30.769 3.54 0.00 0.00 2.90
482 4404 8.746922 TTCAACTATGCATTTTCTTGTTCATC 57.253 30.769 3.54 0.00 0.00 2.92
483 4405 9.545105 TTTTCAACTATGCATTTTCTTGTTCAT 57.455 25.926 3.54 0.00 0.00 2.57
484 4406 8.939201 TTTTCAACTATGCATTTTCTTGTTCA 57.061 26.923 3.54 0.00 0.00 3.18
485 4407 9.636965 GTTTTTCAACTATGCATTTTCTTGTTC 57.363 29.630 3.54 0.00 0.00 3.18
486 4408 9.160496 TGTTTTTCAACTATGCATTTTCTTGTT 57.840 25.926 3.54 0.00 33.58 2.83
487 4409 8.715191 TGTTTTTCAACTATGCATTTTCTTGT 57.285 26.923 3.54 0.00 33.58 3.16
488 4410 9.985318 TTTGTTTTTCAACTATGCATTTTCTTG 57.015 25.926 3.54 1.87 35.61 3.02
494 4416 9.986833 GTTTCTTTTGTTTTTCAACTATGCATT 57.013 25.926 3.54 0.00 35.61 3.56
495 4417 8.327429 CGTTTCTTTTGTTTTTCAACTATGCAT 58.673 29.630 3.79 3.79 35.61 3.96
496 4418 7.329717 ACGTTTCTTTTGTTTTTCAACTATGCA 59.670 29.630 0.00 0.00 35.61 3.96
497 4419 7.630606 CACGTTTCTTTTGTTTTTCAACTATGC 59.369 33.333 0.00 0.00 35.61 3.14
498 4420 8.107564 CCACGTTTCTTTTGTTTTTCAACTATG 58.892 33.333 0.00 0.00 35.61 2.23
499 4421 7.815549 ACCACGTTTCTTTTGTTTTTCAACTAT 59.184 29.630 0.00 0.00 35.61 2.12
500 4422 7.146648 ACCACGTTTCTTTTGTTTTTCAACTA 58.853 30.769 0.00 0.00 35.61 2.24
501 4423 5.986741 ACCACGTTTCTTTTGTTTTTCAACT 59.013 32.000 0.00 0.00 35.61 3.16
502 4424 6.218025 ACCACGTTTCTTTTGTTTTTCAAC 57.782 33.333 0.00 0.00 35.61 3.18
503 4425 5.117287 CGACCACGTTTCTTTTGTTTTTCAA 59.883 36.000 0.00 0.00 34.56 2.69
504 4426 4.617645 CGACCACGTTTCTTTTGTTTTTCA 59.382 37.500 0.00 0.00 34.56 2.69
505 4427 4.030865 CCGACCACGTTTCTTTTGTTTTTC 59.969 41.667 0.00 0.00 37.88 2.29
506 4428 3.921630 CCGACCACGTTTCTTTTGTTTTT 59.078 39.130 0.00 0.00 37.88 1.94
507 4429 3.503891 CCGACCACGTTTCTTTTGTTTT 58.496 40.909 0.00 0.00 37.88 2.43
508 4430 2.732912 GCCGACCACGTTTCTTTTGTTT 60.733 45.455 0.00 0.00 37.88 2.83
509 4431 1.202211 GCCGACCACGTTTCTTTTGTT 60.202 47.619 0.00 0.00 37.88 2.83
510 4432 0.379316 GCCGACCACGTTTCTTTTGT 59.621 50.000 0.00 0.00 37.88 2.83
511 4433 0.378962 TGCCGACCACGTTTCTTTTG 59.621 50.000 0.00 0.00 37.88 2.44
512 4434 0.661020 CTGCCGACCACGTTTCTTTT 59.339 50.000 0.00 0.00 37.88 2.27
513 4435 1.164041 CCTGCCGACCACGTTTCTTT 61.164 55.000 0.00 0.00 37.88 2.52
514 4436 1.597027 CCTGCCGACCACGTTTCTT 60.597 57.895 0.00 0.00 37.88 2.52
515 4437 1.827399 ATCCTGCCGACCACGTTTCT 61.827 55.000 0.00 0.00 37.88 2.52
516 4438 0.953960 AATCCTGCCGACCACGTTTC 60.954 55.000 0.00 0.00 37.88 2.78
517 4439 0.953960 GAATCCTGCCGACCACGTTT 60.954 55.000 0.00 0.00 37.88 3.60
518 4440 1.375523 GAATCCTGCCGACCACGTT 60.376 57.895 0.00 0.00 37.88 3.99
519 4441 2.264794 GAATCCTGCCGACCACGT 59.735 61.111 0.00 0.00 37.88 4.49
520 4442 2.829043 TTCGAATCCTGCCGACCACG 62.829 60.000 0.00 0.00 34.26 4.94
521 4443 1.079405 TTCGAATCCTGCCGACCAC 60.079 57.895 0.00 0.00 34.26 4.16
522 4444 1.079405 GTTCGAATCCTGCCGACCA 60.079 57.895 0.00 0.00 34.26 4.02
523 4445 1.814169 GGTTCGAATCCTGCCGACC 60.814 63.158 0.00 0.00 34.26 4.79
524 4446 0.391263 AAGGTTCGAATCCTGCCGAC 60.391 55.000 16.67 0.00 35.27 4.79
525 4447 1.187974 TAAGGTTCGAATCCTGCCGA 58.812 50.000 16.67 0.00 35.27 5.54
526 4448 1.867233 CATAAGGTTCGAATCCTGCCG 59.133 52.381 16.67 7.31 35.27 5.69
527 4449 2.158813 TCCATAAGGTTCGAATCCTGCC 60.159 50.000 16.67 6.81 35.27 4.85
528 4450 2.872858 GTCCATAAGGTTCGAATCCTGC 59.127 50.000 16.67 0.00 35.27 4.85
529 4451 3.118408 TGGTCCATAAGGTTCGAATCCTG 60.118 47.826 16.67 7.83 35.27 3.86
530 4452 3.112263 TGGTCCATAAGGTTCGAATCCT 58.888 45.455 4.40 9.01 36.81 3.24
531 4453 3.553828 TGGTCCATAAGGTTCGAATCC 57.446 47.619 4.40 6.73 35.89 3.01
532 4454 4.201920 GCTTTGGTCCATAAGGTTCGAATC 60.202 45.833 0.00 0.00 35.89 2.52
533 4455 3.694566 GCTTTGGTCCATAAGGTTCGAAT 59.305 43.478 0.00 0.00 35.89 3.34
534 4456 3.078837 GCTTTGGTCCATAAGGTTCGAA 58.921 45.455 12.75 0.00 35.89 3.71
535 4457 2.039216 TGCTTTGGTCCATAAGGTTCGA 59.961 45.455 12.75 0.00 35.89 3.71
536 4458 2.432444 TGCTTTGGTCCATAAGGTTCG 58.568 47.619 12.75 0.00 35.89 3.95
537 4459 6.071616 TGTTTATGCTTTGGTCCATAAGGTTC 60.072 38.462 12.75 1.88 35.88 3.62
538 4460 5.777732 TGTTTATGCTTTGGTCCATAAGGTT 59.222 36.000 12.75 0.00 35.88 3.50
539 4461 5.329399 TGTTTATGCTTTGGTCCATAAGGT 58.671 37.500 12.75 0.00 35.88 3.50
540 4462 5.913137 TGTTTATGCTTTGGTCCATAAGG 57.087 39.130 12.75 0.00 35.88 2.69
541 4463 6.686630 TGTTGTTTATGCTTTGGTCCATAAG 58.313 36.000 0.00 1.04 35.88 1.73
542 4464 6.656632 TGTTGTTTATGCTTTGGTCCATAA 57.343 33.333 0.00 0.00 33.44 1.90
543 4465 6.656632 TTGTTGTTTATGCTTTGGTCCATA 57.343 33.333 0.00 0.00 0.00 2.74
544 4466 5.543507 TTGTTGTTTATGCTTTGGTCCAT 57.456 34.783 0.00 0.00 0.00 3.41
545 4467 5.344743 TTTGTTGTTTATGCTTTGGTCCA 57.655 34.783 0.00 0.00 0.00 4.02
546 4468 5.988561 TCATTTGTTGTTTATGCTTTGGTCC 59.011 36.000 0.00 0.00 0.00 4.46
547 4469 7.475771 TTCATTTGTTGTTTATGCTTTGGTC 57.524 32.000 0.00 0.00 0.00 4.02
548 4470 7.856145 TTTCATTTGTTGTTTATGCTTTGGT 57.144 28.000 0.00 0.00 0.00 3.67
549 4471 9.224058 CTTTTTCATTTGTTGTTTATGCTTTGG 57.776 29.630 0.00 0.00 0.00 3.28
550 4472 9.985318 TCTTTTTCATTTGTTGTTTATGCTTTG 57.015 25.926 0.00 0.00 0.00 2.77
558 4480 9.688592 TGCATTTTTCTTTTTCATTTGTTGTTT 57.311 22.222 0.00 0.00 0.00 2.83
559 4481 9.857957 ATGCATTTTTCTTTTTCATTTGTTGTT 57.142 22.222 0.00 0.00 0.00 2.83
568 4490 9.761504 TGTTCATCTATGCATTTTTCTTTTTCA 57.238 25.926 3.54 0.00 0.00 2.69
573 4495 9.545105 TGTTTTGTTCATCTATGCATTTTTCTT 57.455 25.926 3.54 0.00 0.00 2.52
574 4496 9.715121 ATGTTTTGTTCATCTATGCATTTTTCT 57.285 25.926 3.54 0.00 0.00 2.52
579 4501 9.926158 TGTTTATGTTTTGTTCATCTATGCATT 57.074 25.926 3.54 0.00 0.00 3.56
580 4502 9.926158 TTGTTTATGTTTTGTTCATCTATGCAT 57.074 25.926 3.79 3.79 0.00 3.96
581 4503 9.190858 GTTGTTTATGTTTTGTTCATCTATGCA 57.809 29.630 0.00 0.00 0.00 3.96
582 4504 9.190858 TGTTGTTTATGTTTTGTTCATCTATGC 57.809 29.630 0.00 0.00 0.00 3.14
614 4536 9.545105 TGTTTGTTCATCTATGCATTTTCTTTT 57.455 25.926 3.54 0.00 0.00 2.27
615 4537 9.715121 ATGTTTGTTCATCTATGCATTTTCTTT 57.285 25.926 3.54 0.00 0.00 2.52
620 4542 9.926158 TGTTTATGTTTGTTCATCTATGCATTT 57.074 25.926 3.54 0.00 0.00 2.32
621 4543 9.926158 TTGTTTATGTTTGTTCATCTATGCATT 57.074 25.926 3.54 0.00 0.00 3.56
622 4544 9.357652 GTTGTTTATGTTTGTTCATCTATGCAT 57.642 29.630 3.79 3.79 0.00 3.96
623 4545 8.355913 TGTTGTTTATGTTTGTTCATCTATGCA 58.644 29.630 0.00 0.00 0.00 3.96
624 4546 8.741101 TGTTGTTTATGTTTGTTCATCTATGC 57.259 30.769 0.00 0.00 0.00 3.14
662 4584 9.986833 GTTTCTTTTGTTTTTCAACTATGCATT 57.013 25.926 3.54 0.00 35.61 3.56
663 4585 8.327429 CGTTTCTTTTGTTTTTCAACTATGCAT 58.673 29.630 3.79 3.79 35.61 3.96
664 4586 7.329717 ACGTTTCTTTTGTTTTTCAACTATGCA 59.670 29.630 0.00 0.00 35.61 3.96
665 4587 7.630606 CACGTTTCTTTTGTTTTTCAACTATGC 59.369 33.333 0.00 0.00 35.61 3.14
666 4588 8.107564 CCACGTTTCTTTTGTTTTTCAACTATG 58.892 33.333 0.00 0.00 35.61 2.23
667 4589 7.815549 ACCACGTTTCTTTTGTTTTTCAACTAT 59.184 29.630 0.00 0.00 35.61 2.12
668 4590 7.146648 ACCACGTTTCTTTTGTTTTTCAACTA 58.853 30.769 0.00 0.00 35.61 2.24
669 4591 5.986741 ACCACGTTTCTTTTGTTTTTCAACT 59.013 32.000 0.00 0.00 35.61 3.16
670 4592 6.218025 ACCACGTTTCTTTTGTTTTTCAAC 57.782 33.333 0.00 0.00 35.61 3.18
671 4593 5.117287 CGACCACGTTTCTTTTGTTTTTCAA 59.883 36.000 0.00 0.00 34.56 2.69
672 4594 4.617645 CGACCACGTTTCTTTTGTTTTTCA 59.382 37.500 0.00 0.00 34.56 2.69
673 4595 4.030865 CCGACCACGTTTCTTTTGTTTTTC 59.969 41.667 0.00 0.00 37.88 2.29
674 4596 3.921630 CCGACCACGTTTCTTTTGTTTTT 59.078 39.130 0.00 0.00 37.88 1.94
675 4597 3.503891 CCGACCACGTTTCTTTTGTTTT 58.496 40.909 0.00 0.00 37.88 2.43
676 4598 2.732912 GCCGACCACGTTTCTTTTGTTT 60.733 45.455 0.00 0.00 37.88 2.83
677 4599 1.202211 GCCGACCACGTTTCTTTTGTT 60.202 47.619 0.00 0.00 37.88 2.83
678 4600 0.379316 GCCGACCACGTTTCTTTTGT 59.621 50.000 0.00 0.00 37.88 2.83
679 4601 0.378962 TGCCGACCACGTTTCTTTTG 59.621 50.000 0.00 0.00 37.88 2.44
680 4602 0.661020 CTGCCGACCACGTTTCTTTT 59.339 50.000 0.00 0.00 37.88 2.27
681 4603 1.164041 CCTGCCGACCACGTTTCTTT 61.164 55.000 0.00 0.00 37.88 2.52
682 4604 1.597027 CCTGCCGACCACGTTTCTT 60.597 57.895 0.00 0.00 37.88 2.52
683 4605 1.827399 ATCCTGCCGACCACGTTTCT 61.827 55.000 0.00 0.00 37.88 2.52
684 4606 0.953960 AATCCTGCCGACCACGTTTC 60.954 55.000 0.00 0.00 37.88 2.78
685 4607 0.953960 GAATCCTGCCGACCACGTTT 60.954 55.000 0.00 0.00 37.88 3.60
686 4608 1.375523 GAATCCTGCCGACCACGTT 60.376 57.895 0.00 0.00 37.88 3.99
687 4609 2.264794 GAATCCTGCCGACCACGT 59.735 61.111 0.00 0.00 37.88 4.49
688 4610 2.829043 TTCGAATCCTGCCGACCACG 62.829 60.000 0.00 0.00 34.26 4.94
689 4611 1.079405 TTCGAATCCTGCCGACCAC 60.079 57.895 0.00 0.00 34.26 4.16
690 4612 1.079405 GTTCGAATCCTGCCGACCA 60.079 57.895 0.00 0.00 34.26 4.02
691 4613 1.814169 GGTTCGAATCCTGCCGACC 60.814 63.158 0.00 0.00 34.26 4.79
692 4614 0.391263 AAGGTTCGAATCCTGCCGAC 60.391 55.000 16.67 0.00 35.27 4.79
693 4615 1.187974 TAAGGTTCGAATCCTGCCGA 58.812 50.000 16.67 0.00 35.27 5.54
694 4616 1.867233 CATAAGGTTCGAATCCTGCCG 59.133 52.381 16.67 7.31 35.27 5.69
695 4617 2.158813 TCCATAAGGTTCGAATCCTGCC 60.159 50.000 16.67 6.81 35.27 4.85
696 4618 2.872858 GTCCATAAGGTTCGAATCCTGC 59.127 50.000 16.67 0.00 35.27 4.85
697 4619 3.118408 TGGTCCATAAGGTTCGAATCCTG 60.118 47.826 16.67 7.83 35.27 3.86
698 4620 3.112263 TGGTCCATAAGGTTCGAATCCT 58.888 45.455 4.40 9.01 36.81 3.24
699 4621 3.553828 TGGTCCATAAGGTTCGAATCC 57.446 47.619 4.40 6.73 35.89 3.01
700 4622 4.201920 GCTTTGGTCCATAAGGTTCGAATC 60.202 45.833 0.00 0.00 35.89 2.52
701 4623 3.694566 GCTTTGGTCCATAAGGTTCGAAT 59.305 43.478 0.00 0.00 35.89 3.34
702 4624 3.078837 GCTTTGGTCCATAAGGTTCGAA 58.921 45.455 12.75 0.00 35.89 3.71
703 4625 2.039216 TGCTTTGGTCCATAAGGTTCGA 59.961 45.455 12.75 0.00 35.89 3.71
704 4626 2.432444 TGCTTTGGTCCATAAGGTTCG 58.568 47.619 12.75 0.00 35.89 3.95
705 4627 6.071616 TGTTTATGCTTTGGTCCATAAGGTTC 60.072 38.462 12.75 1.88 35.88 3.62
706 4628 5.777732 TGTTTATGCTTTGGTCCATAAGGTT 59.222 36.000 12.75 0.00 35.88 3.50
707 4629 5.329399 TGTTTATGCTTTGGTCCATAAGGT 58.671 37.500 12.75 0.00 35.88 3.50
708 4630 5.913137 TGTTTATGCTTTGGTCCATAAGG 57.087 39.130 12.75 0.00 35.88 2.69
709 4631 6.686630 TGTTGTTTATGCTTTGGTCCATAAG 58.313 36.000 0.00 1.04 35.88 1.73
710 4632 6.656632 TGTTGTTTATGCTTTGGTCCATAA 57.343 33.333 0.00 0.00 33.44 1.90
711 4633 6.656632 TTGTTGTTTATGCTTTGGTCCATA 57.343 33.333 0.00 0.00 0.00 2.74
712 4634 5.543507 TTGTTGTTTATGCTTTGGTCCAT 57.456 34.783 0.00 0.00 0.00 3.41
713 4635 5.344743 TTTGTTGTTTATGCTTTGGTCCA 57.655 34.783 0.00 0.00 0.00 4.02
714 4636 5.988561 TCATTTGTTGTTTATGCTTTGGTCC 59.011 36.000 0.00 0.00 0.00 4.46
715 4637 7.475771 TTCATTTGTTGTTTATGCTTTGGTC 57.524 32.000 0.00 0.00 0.00 4.02
716 4638 7.856145 TTTCATTTGTTGTTTATGCTTTGGT 57.144 28.000 0.00 0.00 0.00 3.67
717 4639 9.224058 CTTTTTCATTTGTTGTTTATGCTTTGG 57.776 29.630 0.00 0.00 0.00 3.28
718 4640 9.985318 TCTTTTTCATTTGTTGTTTATGCTTTG 57.015 25.926 0.00 0.00 0.00 2.77
726 4648 9.688592 TGCATTTTTCTTTTTCATTTGTTGTTT 57.311 22.222 0.00 0.00 0.00 2.83
727 4649 9.857957 ATGCATTTTTCTTTTTCATTTGTTGTT 57.142 22.222 0.00 0.00 0.00 2.83
736 4658 9.761504 TGTTCATCTATGCATTTTTCTTTTTCA 57.238 25.926 3.54 0.00 0.00 2.69
741 4663 9.545105 TGTTTTGTTCATCTATGCATTTTTCTT 57.455 25.926 3.54 0.00 0.00 2.52
742 4664 9.715121 ATGTTTTGTTCATCTATGCATTTTTCT 57.285 25.926 3.54 0.00 0.00 2.52
747 4669 9.926158 TGTTTATGTTTTGTTCATCTATGCATT 57.074 25.926 3.54 0.00 0.00 3.56
748 4670 9.926158 TTGTTTATGTTTTGTTCATCTATGCAT 57.074 25.926 3.79 3.79 0.00 3.96
749 4671 9.190858 GTTGTTTATGTTTTGTTCATCTATGCA 57.809 29.630 0.00 0.00 0.00 3.96
750 4672 9.190858 TGTTGTTTATGTTTTGTTCATCTATGC 57.809 29.630 0.00 0.00 0.00 3.14
800 4722 6.035542 TGCCGATCAAGTTTCTTTTGTTTTTC 59.964 34.615 0.00 0.00 0.00 2.29
816 4739 1.651987 GTTCGAATCCTGCCGATCAA 58.348 50.000 0.00 0.00 34.58 2.57
819 4742 0.179073 CAGGTTCGAATCCTGCCGAT 60.179 55.000 24.25 0.00 44.46 4.18
843 4769 3.589951 AGAAATCATGTGGGCTATGCT 57.410 42.857 0.00 0.00 0.00 3.79
847 4773 5.614308 CATGACTAGAAATCATGTGGGCTA 58.386 41.667 11.77 0.00 45.59 3.93
869 4796 2.727392 CCGGAGTGGTTATCGGGCA 61.727 63.158 0.00 0.00 38.93 5.36
899 4826 5.218885 CGGCAAAACATCAAATAGACACAA 58.781 37.500 0.00 0.00 0.00 3.33
905 4832 9.515020 AATATGTAACGGCAAAACATCAAATAG 57.485 29.630 0.00 0.00 35.54 1.73
911 4838 4.436523 GCGAATATGTAACGGCAAAACATC 59.563 41.667 0.00 0.00 35.54 3.06
914 4841 2.774074 CGCGAATATGTAACGGCAAAAC 59.226 45.455 0.00 0.00 0.00 2.43
919 4846 2.887733 CTTTCGCGAATATGTAACGGC 58.112 47.619 24.05 0.00 0.00 5.68
920 4847 2.887733 GCTTTCGCGAATATGTAACGG 58.112 47.619 24.05 5.79 0.00 4.44
933 4860 0.100503 AATAATGGGCACGCTTTCGC 59.899 50.000 0.00 0.00 39.84 4.70
934 4861 3.311322 TCTTAATAATGGGCACGCTTTCG 59.689 43.478 0.00 0.00 42.43 3.46
937 4865 4.335594 GTCTTCTTAATAATGGGCACGCTT 59.664 41.667 0.00 0.00 0.00 4.68
949 4877 3.773119 AGGACGGCCTTGTCTTCTTAATA 59.227 43.478 2.12 0.00 43.90 0.98
967 4895 4.554330 CGATAAGTTACAGCGGTAGAGGAC 60.554 50.000 0.00 0.00 0.00 3.85
990 4918 1.944676 CGCCGCCATACTCTTCGAC 60.945 63.158 0.00 0.00 0.00 4.20
1020 4948 1.692749 CGGATTGGGGGAGGAGGAA 60.693 63.158 0.00 0.00 0.00 3.36
1170 5102 3.748568 AGAAGAAAGCAAACGAGATGGTC 59.251 43.478 0.00 0.00 0.00 4.02
1174 5106 3.339141 GGGAGAAGAAAGCAAACGAGAT 58.661 45.455 0.00 0.00 0.00 2.75
1283 5215 2.815647 GCCGTAGTGTGCTGGAGC 60.816 66.667 0.00 0.00 42.50 4.70
1383 5315 1.880675 CGACTGAGCCATCGGTAGTAT 59.119 52.381 0.00 0.00 45.36 2.12
1478 5410 9.162764 GGATAAGCTATTCGCAGGAAAATAATA 57.837 33.333 0.00 0.00 42.61 0.98
1479 5411 7.148407 CGGATAAGCTATTCGCAGGAAAATAAT 60.148 37.037 0.00 0.00 42.61 1.28
1480 5412 6.147164 CGGATAAGCTATTCGCAGGAAAATAA 59.853 38.462 0.00 0.00 42.61 1.40
1481 5413 5.637810 CGGATAAGCTATTCGCAGGAAAATA 59.362 40.000 0.00 0.00 42.61 1.40
1488 5420 6.893958 ATAATTCGGATAAGCTATTCGCAG 57.106 37.500 0.00 0.00 42.61 5.18
1502 5434 8.091449 AGCAACCAAACAAAATTATAATTCGGA 58.909 29.630 11.08 0.00 0.00 4.55
1589 5521 0.604073 TTCAATCAGGTCACGCGGTA 59.396 50.000 12.47 0.00 0.00 4.02
1594 5526 4.026228 CGAGAATCATTCAATCAGGTCACG 60.026 45.833 0.00 0.00 33.17 4.35
1728 5665 4.454504 TCCTAACAAATCTCGAAACCAAGC 59.545 41.667 0.00 0.00 0.00 4.01
1787 5724 8.533153 GTTAAATCTAATCTCGTGAGCTACAAC 58.467 37.037 0.00 0.00 0.00 3.32
1882 5819 6.071616 GCTAAAATGTTCATGGGGTACTTCAA 60.072 38.462 0.00 0.00 0.00 2.69
2134 6072 1.140161 TTATGAAGGACGGGCGTCG 59.860 57.895 0.00 0.00 45.41 5.12
2178 6118 9.420551 GTAACTAACTACACTATGAAGCAAGTT 57.579 33.333 0.00 0.00 0.00 2.66
2188 6128 7.842743 TGAGGGATTGGTAACTAACTACACTAT 59.157 37.037 0.00 0.00 37.61 2.12
2278 6218 2.898612 AGATGATCGATGAGTCTGCCAT 59.101 45.455 0.54 0.00 0.00 4.40
2327 6267 1.153086 AAGCCAGCCCAGCTAATCG 60.153 57.895 0.00 0.00 40.49 3.34
2457 6401 3.562557 GTCGTGTGGTGTTCTGGTTATTT 59.437 43.478 0.00 0.00 0.00 1.40
2607 6551 8.786838 TCAGCCTCTCCACTATATATCTCTATT 58.213 37.037 0.00 0.00 0.00 1.73
2644 6588 9.396022 GATTAGACTTTCCCAAGATGAAACATA 57.604 33.333 0.00 0.00 33.72 2.29
2718 6662 4.209538 TGAGGGTGCAGATAAAATGATGG 58.790 43.478 0.00 0.00 0.00 3.51
2779 6723 5.053145 TGCCACATCATAAAAACCACAAAC 58.947 37.500 0.00 0.00 0.00 2.93
2873 6817 4.293494 AGAGTGGAGAGGCTGATAAATGA 58.707 43.478 0.00 0.00 0.00 2.57
2992 6938 2.435372 TGGCAAACTTCTTCAGGTGT 57.565 45.000 0.00 0.00 0.00 4.16
3103 7058 0.393537 CTGGAGGTGGATGAGCAACC 60.394 60.000 0.00 0.00 0.00 3.77
3336 7292 4.922206 TGAAAAGGGAGTACTGCATCATT 58.078 39.130 16.81 8.10 0.00 2.57
3513 7469 4.642429 ACATGGGTAGAAGTTCTGTTGAC 58.358 43.478 15.90 5.35 0.00 3.18
3902 7888 5.597594 TGCATTGCATTGGATAACCTAATCA 59.402 36.000 7.38 0.00 33.13 2.57
3995 7981 6.127897 GCTGCATAGTCAACCTGTAAAAGAAT 60.128 38.462 0.00 0.00 0.00 2.40
4054 8040 2.629017 ATGCCAGTGGGGAGAAAATT 57.371 45.000 12.15 0.00 38.23 1.82
4159 8145 7.501559 TCCACTTACAGAGTACTACATGGTATC 59.498 40.741 0.00 0.00 36.65 2.24
4195 8181 4.083324 CCGACATAACTGACTTGTGCATTT 60.083 41.667 0.00 0.00 0.00 2.32
4422 8411 2.094234 GTGCAGTTTTTGTGTGTTCCCT 60.094 45.455 0.00 0.00 0.00 4.20
4570 8563 7.904558 AGGAACATGTCTACATCTAGAATGA 57.095 36.000 0.00 0.00 33.61 2.57
4602 8596 6.438425 ACTTACATTTAGGAACGGAGGAAGTA 59.562 38.462 0.00 0.00 0.00 2.24
4603 8597 5.247792 ACTTACATTTAGGAACGGAGGAAGT 59.752 40.000 0.00 0.00 0.00 3.01
4604 8598 5.731591 ACTTACATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
4605 8599 5.482878 AGACTTACATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
4606 8600 5.021458 AGACTTACATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
4607 8601 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4608 8602 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
4609 8603 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
4610 8604 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
4611 8605 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
4612 8606 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
4618 8612 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
4619 8613 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
4620 8614 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
4621 8615 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
4622 8616 9.522804 CATAGTGGAATCTCTACAAAGACTTAC 57.477 37.037 0.00 0.00 29.47 2.34
4623 8617 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
4624 8618 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
4625 8619 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
4626 8620 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
4627 8621 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
4628 8622 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
4629 8623 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
4630 8624 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
4631 8625 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
4632 8626 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
4633 8627 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
4634 8628 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
4635 8629 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
4636 8630 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
4637 8631 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
4638 8632 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
4639 8633 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
4640 8634 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
4641 8635 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
4642 8636 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
4643 8637 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
4644 8638 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
4645 8639 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
4646 8640 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
4647 8641 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
4648 8642 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
4649 8643 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
4650 8644 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
4651 8645 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
4679 8673 9.838339 GGAGGAAAATGAATGAATCTACTCTTA 57.162 33.333 0.00 0.00 0.00 2.10
4680 8674 7.497249 CGGAGGAAAATGAATGAATCTACTCTT 59.503 37.037 0.00 0.00 0.00 2.85
4681 8675 6.989169 CGGAGGAAAATGAATGAATCTACTCT 59.011 38.462 0.00 0.00 0.00 3.24
4682 8676 6.763610 ACGGAGGAAAATGAATGAATCTACTC 59.236 38.462 0.00 0.00 0.00 2.59
4683 8677 6.653989 ACGGAGGAAAATGAATGAATCTACT 58.346 36.000 0.00 0.00 0.00 2.57
4684 8678 6.927294 ACGGAGGAAAATGAATGAATCTAC 57.073 37.500 0.00 0.00 0.00 2.59
4685 8679 8.210946 ACATACGGAGGAAAATGAATGAATCTA 58.789 33.333 0.00 0.00 0.00 1.98
4686 8680 7.056635 ACATACGGAGGAAAATGAATGAATCT 58.943 34.615 0.00 0.00 0.00 2.40
4687 8681 7.264373 ACATACGGAGGAAAATGAATGAATC 57.736 36.000 0.00 0.00 0.00 2.52
4688 8682 7.993183 ACTACATACGGAGGAAAATGAATGAAT 59.007 33.333 0.00 0.00 0.00 2.57
4689 8683 7.335627 ACTACATACGGAGGAAAATGAATGAA 58.664 34.615 0.00 0.00 0.00 2.57
4690 8684 6.884832 ACTACATACGGAGGAAAATGAATGA 58.115 36.000 0.00 0.00 0.00 2.57
4691 8685 6.202954 GGACTACATACGGAGGAAAATGAATG 59.797 42.308 0.00 0.00 0.00 2.67
4692 8686 6.126883 TGGACTACATACGGAGGAAAATGAAT 60.127 38.462 0.00 0.00 0.00 2.57
4693 8687 5.188163 TGGACTACATACGGAGGAAAATGAA 59.812 40.000 0.00 0.00 0.00 2.57
4694 8688 4.712829 TGGACTACATACGGAGGAAAATGA 59.287 41.667 0.00 0.00 0.00 2.57
4695 8689 4.809426 GTGGACTACATACGGAGGAAAATG 59.191 45.833 0.00 0.00 0.00 2.32
4696 8690 4.141779 GGTGGACTACATACGGAGGAAAAT 60.142 45.833 0.00 0.00 0.00 1.82
4697 8691 3.196254 GGTGGACTACATACGGAGGAAAA 59.804 47.826 0.00 0.00 0.00 2.29
4698 8692 2.762327 GGTGGACTACATACGGAGGAAA 59.238 50.000 0.00 0.00 0.00 3.13
4699 8693 2.024655 AGGTGGACTACATACGGAGGAA 60.025 50.000 0.00 0.00 0.00 3.36
4700 8694 1.567649 AGGTGGACTACATACGGAGGA 59.432 52.381 0.00 0.00 0.00 3.71
4701 8695 2.068834 AGGTGGACTACATACGGAGG 57.931 55.000 0.00 0.00 0.00 4.30
4702 8696 3.818180 ACTAGGTGGACTACATACGGAG 58.182 50.000 0.00 0.00 0.00 4.63
4703 8697 3.939740 ACTAGGTGGACTACATACGGA 57.060 47.619 0.00 0.00 0.00 4.69
4704 8698 4.965814 TCTACTAGGTGGACTACATACGG 58.034 47.826 0.00 0.00 0.00 4.02
4705 8699 6.935771 AGATTCTACTAGGTGGACTACATACG 59.064 42.308 0.00 0.00 0.00 3.06
4706 8700 8.158789 AGAGATTCTACTAGGTGGACTACATAC 58.841 40.741 0.00 0.00 0.00 2.39
4707 8701 8.277720 AGAGATTCTACTAGGTGGACTACATA 57.722 38.462 0.00 0.00 0.00 2.29
4708 8702 7.156694 AGAGATTCTACTAGGTGGACTACAT 57.843 40.000 0.00 0.00 0.00 2.29
4709 8703 6.578313 AGAGATTCTACTAGGTGGACTACA 57.422 41.667 0.00 0.00 0.00 2.74
4710 8704 7.967890 GTAGAGATTCTACTAGGTGGACTAC 57.032 44.000 8.60 0.00 44.45 2.73
4754 8748 9.322773 GGGTGTATCAATAGTTTTTAGTACTCC 57.677 37.037 0.00 0.00 0.00 3.85
4755 8749 9.880157 TGGGTGTATCAATAGTTTTTAGTACTC 57.120 33.333 0.00 0.00 0.00 2.59
4756 8750 9.662947 GTGGGTGTATCAATAGTTTTTAGTACT 57.337 33.333 0.00 0.00 0.00 2.73
4757 8751 8.598075 CGTGGGTGTATCAATAGTTTTTAGTAC 58.402 37.037 0.00 0.00 0.00 2.73
4795 8789 1.577328 CCAAAGACGCGAGGCAACAT 61.577 55.000 15.93 0.00 46.78 2.71
4805 8800 2.556287 CTTGTCGCCCAAAGACGC 59.444 61.111 0.00 0.00 41.24 5.19
4860 8855 1.546476 CCACTAGAGACGAGGCAAACT 59.454 52.381 0.00 0.00 0.00 2.66
4890 8885 2.469516 GGTCCACCGCGCCTTTATG 61.470 63.158 0.00 0.00 0.00 1.90
4929 8945 6.619801 ACTTGTAACTAAAAGCTGAGTTGG 57.380 37.500 15.65 3.73 36.58 3.77
4936 8952 6.688637 ACCGAAAACTTGTAACTAAAAGCT 57.311 33.333 0.00 0.00 0.00 3.74
4937 8953 7.588854 CCTAACCGAAAACTTGTAACTAAAAGC 59.411 37.037 0.00 0.00 0.00 3.51
4938 8954 8.071967 CCCTAACCGAAAACTTGTAACTAAAAG 58.928 37.037 0.00 0.00 0.00 2.27
4993 9010 2.533266 TCTATCATCAGAAAGCCGCC 57.467 50.000 0.00 0.00 0.00 6.13
5001 9018 7.308891 GCGAGAGGAACTTATTCTATCATCAGA 60.309 40.741 0.00 0.00 41.55 3.27
5010 9027 3.181480 GCTGAGCGAGAGGAACTTATTCT 60.181 47.826 0.00 0.00 41.55 2.40
5020 9037 4.567385 GCGAGGCTGAGCGAGAGG 62.567 72.222 0.00 0.00 0.00 3.69
5037 9054 3.528370 CTAGAGGCACCGTCGGGG 61.528 72.222 17.28 13.85 43.62 5.73
5042 9059 0.317479 GACAACACTAGAGGCACCGT 59.683 55.000 0.00 0.00 0.00 4.83
5062 9079 1.815421 CATCTGCACACCGCCCTAC 60.815 63.158 0.00 0.00 41.33 3.18
5065 9082 3.434319 CACATCTGCACACCGCCC 61.434 66.667 0.00 0.00 41.33 6.13
5069 9086 1.001293 TCAGAGACACATCTGCACACC 59.999 52.381 0.00 0.00 45.25 4.16
5075 9092 4.517952 AGAACAGTCAGAGACACATCTG 57.482 45.455 0.00 0.00 46.70 2.90
5078 9095 3.397482 GCAAGAACAGTCAGAGACACAT 58.603 45.455 0.00 0.00 34.60 3.21
5106 9123 1.926561 TCAAAGACCAGCATCGATCG 58.073 50.000 9.36 9.36 0.00 3.69
5112 9129 4.091549 ACAAATCCATCAAAGACCAGCAT 58.908 39.130 0.00 0.00 0.00 3.79
5118 9135 6.101997 GGATCCAAACAAATCCATCAAAGAC 58.898 40.000 6.95 0.00 41.02 3.01
5142 9159 5.334105 CCCAAACAAAGACGAACATAGACTG 60.334 44.000 0.00 0.00 0.00 3.51
5159 9176 0.464735 CGAAGGACACCACCCAAACA 60.465 55.000 0.00 0.00 0.00 2.83
5160 9177 0.179040 TCGAAGGACACCACCCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
5163 9180 3.466881 CTCGAAGGACACCACCCA 58.533 61.111 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.