Multiple sequence alignment - TraesCS5B01G123200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G123200 chr5B 100.000 4383 0 0 1 4383 222353160 222357542 0.000000e+00 8094.0
1 TraesCS5B01G123200 chr5B 87.285 582 72 2 2805 3385 694693557 694694137 0.000000e+00 664.0
2 TraesCS5B01G123200 chr5B 82.576 660 92 16 2885 3528 694315233 694314581 1.060000e-155 560.0
3 TraesCS5B01G123200 chr5B 87.111 450 58 0 2191 2640 694692856 694693305 1.090000e-140 510.0
4 TraesCS5B01G123200 chr5B 82.051 117 19 2 1001 1116 694692608 694692723 1.000000e-16 99.0
5 TraesCS5B01G123200 chr5B 97.222 36 1 0 2967 3002 416418861 416418896 1.320000e-05 62.1
6 TraesCS5B01G123200 chr5A 94.953 2140 75 12 586 2718 270152724 270154837 0.000000e+00 3323.0
7 TraesCS5B01G123200 chr5A 92.838 1103 40 12 2714 3777 270154917 270156019 0.000000e+00 1563.0
8 TraesCS5B01G123200 chr5A 91.416 466 39 1 3874 4339 270156238 270156702 4.780000e-179 638.0
9 TraesCS5B01G123200 chr5D 95.983 1693 55 7 2078 3767 209302572 209304254 0.000000e+00 2737.0
10 TraesCS5B01G123200 chr5D 94.206 1726 74 12 366 2080 209300589 209302299 0.000000e+00 2610.0
11 TraesCS5B01G123200 chr5D 87.065 603 78 0 2803 3405 556140822 556140220 0.000000e+00 682.0
12 TraesCS5B01G123200 chr5D 87.583 451 54 2 2191 2640 556141519 556141070 5.020000e-144 521.0
13 TraesCS5B01G123200 chr5D 83.761 117 17 2 1001 1116 556141767 556141652 4.630000e-20 110.0
14 TraesCS5B01G123200 chr5D 93.443 61 4 0 3874 3934 209304360 209304420 1.680000e-14 91.6
15 TraesCS5B01G123200 chr4A 84.698 745 92 15 2803 3528 613582064 613581323 0.000000e+00 725.0
16 TraesCS5B01G123200 chr4A 86.667 465 60 2 2177 2640 613582706 613582243 8.410000e-142 514.0
17 TraesCS5B01G123200 chr4A 82.178 606 85 11 2803 3399 613675530 613676121 2.350000e-137 499.0
18 TraesCS5B01G123200 chr7D 95.679 162 5 2 209 368 397555077 397554916 4.350000e-65 259.0
19 TraesCS5B01G123200 chr7D 89.848 197 11 8 205 392 525767958 525768154 1.220000e-60 244.0
20 TraesCS5B01G123200 chr7A 95.062 162 6 2 209 368 451519811 451519972 2.020000e-63 254.0
21 TraesCS5B01G123200 chr7A 95.062 162 6 2 209 368 494786829 494786990 2.020000e-63 254.0
22 TraesCS5B01G123200 chr7B 93.413 167 9 2 207 371 102234480 102234314 3.390000e-61 246.0
23 TraesCS5B01G123200 chr6B 93.413 167 9 2 208 372 615991223 615991057 3.390000e-61 246.0
24 TraesCS5B01G123200 chr4D 92.045 176 11 3 209 381 326382448 326382623 1.220000e-60 244.0
25 TraesCS5B01G123200 chr4D 92.486 173 9 4 203 372 334164559 334164388 1.220000e-60 244.0
26 TraesCS5B01G123200 chr3D 91.620 179 12 3 208 383 375693828 375694006 1.220000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G123200 chr5B 222353160 222357542 4382 False 8094.000000 8094 100.000000 1 4383 1 chr5B.!!$F1 4382
1 TraesCS5B01G123200 chr5B 694314581 694315233 652 True 560.000000 560 82.576000 2885 3528 1 chr5B.!!$R1 643
2 TraesCS5B01G123200 chr5B 694692608 694694137 1529 False 424.333333 664 85.482333 1001 3385 3 chr5B.!!$F3 2384
3 TraesCS5B01G123200 chr5A 270152724 270156702 3978 False 1841.333333 3323 93.069000 586 4339 3 chr5A.!!$F1 3753
4 TraesCS5B01G123200 chr5D 209300589 209304420 3831 False 1812.866667 2737 94.544000 366 3934 3 chr5D.!!$F1 3568
5 TraesCS5B01G123200 chr5D 556140220 556141767 1547 True 437.666667 682 86.136333 1001 3405 3 chr5D.!!$R1 2404
6 TraesCS5B01G123200 chr4A 613581323 613582706 1383 True 619.500000 725 85.682500 2177 3528 2 chr4A.!!$R1 1351
7 TraesCS5B01G123200 chr4A 613675530 613676121 591 False 499.000000 499 82.178000 2803 3399 1 chr4A.!!$F1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.031314 ATGTACGCTGGATCTGCTCG 59.969 55.0 8.96 3.53 0.00 5.03 F
138 139 0.038251 TCTGCTCGAACTGCGACATT 60.038 50.0 0.00 0.00 45.59 2.71 F
142 143 0.179215 CTCGAACTGCGACATTTGCC 60.179 55.0 0.00 0.00 45.59 4.52 F
920 929 0.324738 TCTACCTCCCACCTCAGCTG 60.325 60.0 7.63 7.63 0.00 4.24 F
2327 2650 0.398318 CCCTTCCTCGGATGGATTCC 59.602 60.0 17.03 0.00 40.61 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 1948 1.133976 GTGAGCTATGGCAATGGGTCT 60.134 52.381 16.51 0.0 41.09 3.85 R
1989 2007 4.344359 TGTTTTTACCCCCAGCAAATTC 57.656 40.909 0.00 0.0 0.00 2.17 R
2093 2387 5.894298 ATGATAGGCACAAGAGTAATGGA 57.106 39.130 0.00 0.0 0.00 3.41 R
2572 2895 0.035458 GCCTCATATCAACCCTCCCG 59.965 60.000 0.00 0.0 0.00 5.14 R
3943 4646 0.033503 TATGACCGGAGCACAGGAGA 60.034 55.000 9.46 0.0 35.41 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.429109 AATAATTAGAAAATTTATCCCCACGGT 57.571 29.630 0.00 0.00 36.67 4.83
53 54 7.727578 AATTAGAAAATTTATCCCCACGGTT 57.272 32.000 0.00 0.00 30.98 4.44
54 55 6.762702 TTAGAAAATTTATCCCCACGGTTC 57.237 37.500 0.00 0.00 0.00 3.62
55 56 4.930696 AGAAAATTTATCCCCACGGTTCT 58.069 39.130 0.00 0.00 0.00 3.01
56 57 5.330233 AGAAAATTTATCCCCACGGTTCTT 58.670 37.500 0.00 0.00 0.00 2.52
57 58 5.778241 AGAAAATTTATCCCCACGGTTCTTT 59.222 36.000 0.00 0.00 0.00 2.52
58 59 5.400066 AAATTTATCCCCACGGTTCTTTG 57.600 39.130 0.00 0.00 0.00 2.77
59 60 2.500392 TTATCCCCACGGTTCTTTGG 57.500 50.000 0.00 0.00 0.00 3.28
60 61 1.364269 TATCCCCACGGTTCTTTGGT 58.636 50.000 0.00 0.00 0.00 3.67
61 62 0.481128 ATCCCCACGGTTCTTTGGTT 59.519 50.000 0.00 0.00 0.00 3.67
62 63 0.259356 TCCCCACGGTTCTTTGGTTT 59.741 50.000 0.00 0.00 0.00 3.27
63 64 0.671796 CCCCACGGTTCTTTGGTTTC 59.328 55.000 0.00 0.00 0.00 2.78
64 65 0.309612 CCCACGGTTCTTTGGTTTCG 59.690 55.000 0.00 0.00 0.00 3.46
65 66 1.301423 CCACGGTTCTTTGGTTTCGA 58.699 50.000 0.00 0.00 0.00 3.71
66 67 1.671845 CCACGGTTCTTTGGTTTCGAA 59.328 47.619 0.00 0.00 0.00 3.71
67 68 2.292292 CCACGGTTCTTTGGTTTCGAAT 59.708 45.455 0.00 0.00 0.00 3.34
68 69 3.499157 CCACGGTTCTTTGGTTTCGAATA 59.501 43.478 0.00 0.00 0.00 1.75
69 70 4.460505 CACGGTTCTTTGGTTTCGAATAC 58.539 43.478 0.00 0.15 0.00 1.89
70 71 3.499537 ACGGTTCTTTGGTTTCGAATACC 59.500 43.478 17.44 17.44 36.17 2.73
71 72 3.499157 CGGTTCTTTGGTTTCGAATACCA 59.501 43.478 20.99 20.99 43.71 3.25
72 73 4.155280 CGGTTCTTTGGTTTCGAATACCAT 59.845 41.667 23.66 0.00 44.70 3.55
73 74 5.335348 CGGTTCTTTGGTTTCGAATACCATT 60.335 40.000 23.66 0.00 44.70 3.16
74 75 6.090783 GGTTCTTTGGTTTCGAATACCATTC 58.909 40.000 23.66 15.30 44.70 2.67
75 76 6.072119 GGTTCTTTGGTTTCGAATACCATTCT 60.072 38.462 23.66 0.00 44.70 2.40
76 77 7.120138 GGTTCTTTGGTTTCGAATACCATTCTA 59.880 37.037 23.66 12.35 44.70 2.10
77 78 7.843490 TCTTTGGTTTCGAATACCATTCTAG 57.157 36.000 23.66 18.92 44.70 2.43
78 79 6.821665 TCTTTGGTTTCGAATACCATTCTAGG 59.178 38.462 23.66 14.18 44.70 3.02
79 80 5.943349 TGGTTTCGAATACCATTCTAGGA 57.057 39.130 20.99 4.04 40.65 2.94
80 81 6.494666 TGGTTTCGAATACCATTCTAGGAT 57.505 37.500 20.99 0.00 40.65 3.24
81 82 7.606135 TGGTTTCGAATACCATTCTAGGATA 57.394 36.000 20.99 2.98 40.65 2.59
82 83 7.667557 TGGTTTCGAATACCATTCTAGGATAG 58.332 38.462 20.99 0.00 40.65 2.08
83 84 7.507956 TGGTTTCGAATACCATTCTAGGATAGA 59.492 37.037 20.99 2.46 42.47 1.98
84 85 8.030106 GGTTTCGAATACCATTCTAGGATAGAG 58.970 40.741 18.66 0.00 41.13 2.43
97 98 7.966246 TCTAGGATAGAGATTGAACTCGTAC 57.034 40.000 0.00 0.00 44.15 3.67
98 99 7.737869 TCTAGGATAGAGATTGAACTCGTACT 58.262 38.462 0.00 0.00 44.15 2.73
99 100 6.870971 AGGATAGAGATTGAACTCGTACTC 57.129 41.667 0.00 0.00 41.25 2.59
100 101 5.766174 AGGATAGAGATTGAACTCGTACTCC 59.234 44.000 0.00 0.00 41.25 3.85
101 102 5.334260 GGATAGAGATTGAACTCGTACTCCG 60.334 48.000 0.00 0.00 41.25 4.63
102 103 3.607741 AGAGATTGAACTCGTACTCCGA 58.392 45.455 0.00 0.00 45.00 4.55
103 104 4.008330 AGAGATTGAACTCGTACTCCGAA 58.992 43.478 0.00 0.00 46.75 4.30
104 105 4.094090 AGATTGAACTCGTACTCCGAAC 57.906 45.455 0.00 0.00 46.75 3.95
105 106 2.320805 TTGAACTCGTACTCCGAACG 57.679 50.000 0.00 0.00 46.75 3.95
106 107 1.511850 TGAACTCGTACTCCGAACGA 58.488 50.000 0.00 0.00 46.75 3.85
112 113 3.389687 TCGTACTCCGAACGAATGTAC 57.610 47.619 0.00 5.36 45.62 2.90
113 114 2.096622 CGTACTCCGAACGAATGTACG 58.903 52.381 20.52 20.52 46.10 3.67
114 115 1.842546 GTACTCCGAACGAATGTACGC 59.157 52.381 0.00 0.00 36.70 4.42
115 116 0.524862 ACTCCGAACGAATGTACGCT 59.475 50.000 0.00 0.00 36.70 5.07
116 117 0.914551 CTCCGAACGAATGTACGCTG 59.085 55.000 0.00 0.00 36.70 5.18
117 118 0.457166 TCCGAACGAATGTACGCTGG 60.457 55.000 0.00 0.00 36.70 4.85
118 119 0.457166 CCGAACGAATGTACGCTGGA 60.457 55.000 0.00 0.00 36.70 3.86
119 120 1.556564 CGAACGAATGTACGCTGGAT 58.443 50.000 0.00 0.00 36.70 3.41
120 121 1.517276 CGAACGAATGTACGCTGGATC 59.483 52.381 0.00 0.00 36.70 3.36
121 122 2.794981 CGAACGAATGTACGCTGGATCT 60.795 50.000 0.00 0.00 36.70 2.75
122 123 2.209838 ACGAATGTACGCTGGATCTG 57.790 50.000 0.00 0.00 36.70 2.90
123 124 0.855349 CGAATGTACGCTGGATCTGC 59.145 55.000 0.00 0.00 0.00 4.26
124 125 1.536922 CGAATGTACGCTGGATCTGCT 60.537 52.381 8.96 1.18 0.00 4.24
125 126 2.131183 GAATGTACGCTGGATCTGCTC 58.869 52.381 8.96 2.27 0.00 4.26
126 127 0.031314 ATGTACGCTGGATCTGCTCG 59.969 55.000 8.96 3.53 0.00 5.03
127 128 1.029947 TGTACGCTGGATCTGCTCGA 61.030 55.000 8.96 0.00 0.00 4.04
128 129 0.100682 GTACGCTGGATCTGCTCGAA 59.899 55.000 8.96 0.00 0.00 3.71
129 130 0.100682 TACGCTGGATCTGCTCGAAC 59.899 55.000 8.96 0.00 0.00 3.95
130 131 1.140589 CGCTGGATCTGCTCGAACT 59.859 57.895 8.96 0.00 0.00 3.01
131 132 1.144565 CGCTGGATCTGCTCGAACTG 61.145 60.000 8.96 0.00 0.00 3.16
132 133 1.427592 GCTGGATCTGCTCGAACTGC 61.428 60.000 0.00 0.00 0.00 4.40
133 134 1.144565 CTGGATCTGCTCGAACTGCG 61.145 60.000 0.00 0.00 42.69 5.18
135 136 1.142778 GGATCTGCTCGAACTGCGAC 61.143 60.000 0.00 0.00 45.59 5.19
136 137 0.456824 GATCTGCTCGAACTGCGACA 60.457 55.000 0.00 0.00 45.59 4.35
137 138 0.174389 ATCTGCTCGAACTGCGACAT 59.826 50.000 0.00 0.00 45.59 3.06
138 139 0.038251 TCTGCTCGAACTGCGACATT 60.038 50.000 0.00 0.00 45.59 2.71
139 140 0.792640 CTGCTCGAACTGCGACATTT 59.207 50.000 0.00 0.00 45.59 2.32
140 141 0.512518 TGCTCGAACTGCGACATTTG 59.487 50.000 0.00 0.00 45.59 2.32
141 142 0.790866 GCTCGAACTGCGACATTTGC 60.791 55.000 0.00 0.00 45.59 3.68
142 143 0.179215 CTCGAACTGCGACATTTGCC 60.179 55.000 0.00 0.00 45.59 4.52
143 144 0.602638 TCGAACTGCGACATTTGCCT 60.603 50.000 0.00 0.00 45.59 4.75
144 145 1.075542 CGAACTGCGACATTTGCCTA 58.924 50.000 0.00 0.00 44.57 3.93
145 146 1.463056 CGAACTGCGACATTTGCCTAA 59.537 47.619 0.00 0.00 44.57 2.69
146 147 2.095853 CGAACTGCGACATTTGCCTAAT 59.904 45.455 0.00 0.00 44.57 1.73
147 148 3.426159 CGAACTGCGACATTTGCCTAATT 60.426 43.478 0.00 0.00 44.57 1.40
148 149 4.485163 GAACTGCGACATTTGCCTAATTT 58.515 39.130 0.00 0.00 0.00 1.82
149 150 5.636837 GAACTGCGACATTTGCCTAATTTA 58.363 37.500 0.00 0.00 0.00 1.40
150 151 5.835113 ACTGCGACATTTGCCTAATTTAT 57.165 34.783 0.00 0.00 0.00 1.40
151 152 6.207691 ACTGCGACATTTGCCTAATTTATT 57.792 33.333 0.00 0.00 0.00 1.40
152 153 6.630071 ACTGCGACATTTGCCTAATTTATTT 58.370 32.000 0.00 0.00 0.00 1.40
153 154 7.096551 ACTGCGACATTTGCCTAATTTATTTT 58.903 30.769 0.00 0.00 0.00 1.82
154 155 7.275560 ACTGCGACATTTGCCTAATTTATTTTC 59.724 33.333 0.00 0.00 0.00 2.29
155 156 7.093354 TGCGACATTTGCCTAATTTATTTTCA 58.907 30.769 0.00 0.00 0.00 2.69
156 157 7.062839 TGCGACATTTGCCTAATTTATTTTCAC 59.937 33.333 0.00 0.00 0.00 3.18
157 158 7.062839 GCGACATTTGCCTAATTTATTTTCACA 59.937 33.333 0.00 0.00 0.00 3.58
158 159 9.086336 CGACATTTGCCTAATTTATTTTCACAT 57.914 29.630 0.00 0.00 0.00 3.21
175 176 9.715121 ATTTTCACATTAAACAGAATTCAGCAT 57.285 25.926 8.44 0.00 0.00 3.79
176 177 9.545105 TTTTCACATTAAACAGAATTCAGCATT 57.455 25.926 8.44 1.81 0.00 3.56
208 209 8.054152 TGTTGTATTATGCTCATGAAACATGT 57.946 30.769 17.21 0.00 0.00 3.21
209 210 9.171877 TGTTGTATTATGCTCATGAAACATGTA 57.828 29.630 17.21 9.66 0.00 2.29
210 211 9.438291 GTTGTATTATGCTCATGAAACATGTAC 57.562 33.333 17.21 17.51 0.00 2.90
211 212 8.962884 TGTATTATGCTCATGAAACATGTACT 57.037 30.769 17.21 0.00 0.00 2.73
212 213 9.045223 TGTATTATGCTCATGAAACATGTACTC 57.955 33.333 17.21 0.00 0.00 2.59
213 214 6.925610 TTATGCTCATGAAACATGTACTCC 57.074 37.500 17.21 0.00 0.00 3.85
214 215 3.609853 TGCTCATGAAACATGTACTCCC 58.390 45.455 0.00 0.00 0.00 4.30
215 216 3.264193 TGCTCATGAAACATGTACTCCCT 59.736 43.478 0.00 0.00 0.00 4.20
216 217 3.873952 GCTCATGAAACATGTACTCCCTC 59.126 47.826 0.00 0.00 0.00 4.30
217 218 4.446371 CTCATGAAACATGTACTCCCTCC 58.554 47.826 0.00 0.00 0.00 4.30
218 219 3.843619 TCATGAAACATGTACTCCCTCCA 59.156 43.478 0.00 0.00 0.00 3.86
219 220 4.474651 TCATGAAACATGTACTCCCTCCAT 59.525 41.667 0.00 0.00 0.00 3.41
220 221 4.927267 TGAAACATGTACTCCCTCCATT 57.073 40.909 0.00 0.00 0.00 3.16
221 222 4.843728 TGAAACATGTACTCCCTCCATTC 58.156 43.478 0.00 0.00 0.00 2.67
222 223 3.933861 AACATGTACTCCCTCCATTCC 57.066 47.619 0.00 0.00 0.00 3.01
223 224 3.136641 ACATGTACTCCCTCCATTCCT 57.863 47.619 0.00 0.00 0.00 3.36
224 225 4.280789 ACATGTACTCCCTCCATTCCTA 57.719 45.455 0.00 0.00 0.00 2.94
225 226 4.631234 ACATGTACTCCCTCCATTCCTAA 58.369 43.478 0.00 0.00 0.00 2.69
226 227 5.036916 ACATGTACTCCCTCCATTCCTAAA 58.963 41.667 0.00 0.00 0.00 1.85
227 228 5.672194 ACATGTACTCCCTCCATTCCTAAAT 59.328 40.000 0.00 0.00 0.00 1.40
228 229 6.849697 ACATGTACTCCCTCCATTCCTAAATA 59.150 38.462 0.00 0.00 0.00 1.40
229 230 7.517604 ACATGTACTCCCTCCATTCCTAAATAT 59.482 37.037 0.00 0.00 0.00 1.28
230 231 9.046846 CATGTACTCCCTCCATTCCTAAATATA 57.953 37.037 0.00 0.00 0.00 0.86
231 232 9.629649 ATGTACTCCCTCCATTCCTAAATATAA 57.370 33.333 0.00 0.00 0.00 0.98
232 233 9.101325 TGTACTCCCTCCATTCCTAAATATAAG 57.899 37.037 0.00 0.00 0.00 1.73
233 234 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
234 235 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
235 236 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
236 237 8.437274 TCCCTCCATTCCTAAATATAAGTCTC 57.563 38.462 0.00 0.00 0.00 3.36
237 238 8.242325 TCCCTCCATTCCTAAATATAAGTCTCT 58.758 37.037 0.00 0.00 0.00 3.10
238 239 8.885346 CCCTCCATTCCTAAATATAAGTCTCTT 58.115 37.037 0.00 0.00 0.00 2.85
264 265 9.976511 TTAGAATTTCAATATGGACTACTACGG 57.023 33.333 0.00 0.00 0.00 4.02
265 266 8.246430 AGAATTTCAATATGGACTACTACGGA 57.754 34.615 0.00 0.00 0.00 4.69
266 267 8.871125 AGAATTTCAATATGGACTACTACGGAT 58.129 33.333 0.00 0.00 0.00 4.18
267 268 8.833231 AATTTCAATATGGACTACTACGGATG 57.167 34.615 0.00 0.00 0.00 3.51
268 269 6.971726 TTCAATATGGACTACTACGGATGT 57.028 37.500 0.00 0.00 0.00 3.06
269 270 8.467963 TTTCAATATGGACTACTACGGATGTA 57.532 34.615 0.00 0.00 0.00 2.29
270 271 8.645814 TTCAATATGGACTACTACGGATGTAT 57.354 34.615 0.00 0.00 0.00 2.29
271 272 9.743581 TTCAATATGGACTACTACGGATGTATA 57.256 33.333 0.00 0.00 0.00 1.47
272 273 9.916360 TCAATATGGACTACTACGGATGTATAT 57.084 33.333 0.00 0.00 0.00 0.86
276 277 8.961294 ATGGACTACTACGGATGTATATAGAC 57.039 38.462 0.00 0.00 0.00 2.59
277 278 7.038048 TGGACTACTACGGATGTATATAGACG 58.962 42.308 0.00 0.00 0.00 4.18
278 279 7.038659 GGACTACTACGGATGTATATAGACGT 58.961 42.308 0.00 0.00 38.23 4.34
279 280 8.191446 GGACTACTACGGATGTATATAGACGTA 58.809 40.741 0.00 7.75 35.97 3.57
299 300 7.211966 ACGTAGTTTAGAGTGTACATTCACT 57.788 36.000 19.24 15.46 45.46 3.41
309 310 6.246420 AGTGTACATTCACTCATTTTGCTC 57.754 37.500 0.00 0.00 44.07 4.26
310 311 5.182001 AGTGTACATTCACTCATTTTGCTCC 59.818 40.000 0.00 0.00 44.07 4.70
311 312 5.048782 GTGTACATTCACTCATTTTGCTCCA 60.049 40.000 0.00 0.00 35.68 3.86
312 313 5.711506 TGTACATTCACTCATTTTGCTCCAT 59.288 36.000 0.00 0.00 0.00 3.41
313 314 6.883756 TGTACATTCACTCATTTTGCTCCATA 59.116 34.615 0.00 0.00 0.00 2.74
314 315 7.557358 TGTACATTCACTCATTTTGCTCCATAT 59.443 33.333 0.00 0.00 0.00 1.78
315 316 6.802608 ACATTCACTCATTTTGCTCCATATG 58.197 36.000 0.00 0.00 0.00 1.78
316 317 6.379133 ACATTCACTCATTTTGCTCCATATGT 59.621 34.615 1.24 0.00 0.00 2.29
317 318 7.557358 ACATTCACTCATTTTGCTCCATATGTA 59.443 33.333 1.24 0.00 0.00 2.29
318 319 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
319 320 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
320 321 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
321 322 6.017605 CACTCATTTTGCTCCATATGTAGTCC 60.018 42.308 1.24 0.00 0.00 3.85
322 323 6.000246 TCATTTTGCTCCATATGTAGTCCA 58.000 37.500 1.24 0.00 0.00 4.02
323 324 6.604171 TCATTTTGCTCCATATGTAGTCCAT 58.396 36.000 1.24 0.00 37.58 3.41
324 325 7.744733 TCATTTTGCTCCATATGTAGTCCATA 58.255 34.615 1.24 0.00 40.27 2.74
325 326 8.217111 TCATTTTGCTCCATATGTAGTCCATAA 58.783 33.333 1.24 0.00 39.43 1.90
326 327 9.017509 CATTTTGCTCCATATGTAGTCCATAAT 57.982 33.333 1.24 0.00 39.43 1.28
327 328 7.984422 TTTGCTCCATATGTAGTCCATAATG 57.016 36.000 1.24 0.00 39.43 1.90
328 329 6.053632 TGCTCCATATGTAGTCCATAATGG 57.946 41.667 1.24 0.00 39.43 3.16
329 330 5.784906 TGCTCCATATGTAGTCCATAATGGA 59.215 40.000 1.24 0.00 45.98 3.41
362 363 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
363 364 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
364 365 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
403 404 3.057969 TGACTTGTGGCTGGTTAGATG 57.942 47.619 0.00 0.00 0.00 2.90
405 406 3.181445 TGACTTGTGGCTGGTTAGATGTT 60.181 43.478 0.00 0.00 0.00 2.71
415 416 6.206634 TGGCTGGTTAGATGTTCTACAAAAAG 59.793 38.462 0.00 0.00 0.00 2.27
416 417 6.430000 GGCTGGTTAGATGTTCTACAAAAAGA 59.570 38.462 0.00 0.00 0.00 2.52
417 418 7.121315 GGCTGGTTAGATGTTCTACAAAAAGAT 59.879 37.037 0.00 0.00 0.00 2.40
418 419 8.515414 GCTGGTTAGATGTTCTACAAAAAGATT 58.485 33.333 0.00 0.00 0.00 2.40
425 427 9.415544 AGATGTTCTACAAAAAGATTTCAATGC 57.584 29.630 0.00 0.00 0.00 3.56
427 429 8.578308 TGTTCTACAAAAAGATTTCAATGCTG 57.422 30.769 0.00 0.00 0.00 4.41
456 458 5.009510 TGAATTCGGAGAAGCATAGAGAGAG 59.990 44.000 0.04 0.00 45.90 3.20
457 459 3.847671 TCGGAGAAGCATAGAGAGAGA 57.152 47.619 0.00 0.00 0.00 3.10
462 464 3.476552 AGAAGCATAGAGAGAGACTCCG 58.523 50.000 0.00 0.00 45.96 4.63
474 476 6.434652 AGAGAGAGACTCCGAACAAGAAAATA 59.565 38.462 0.00 0.00 45.96 1.40
480 482 9.535878 GAGACTCCGAACAAGAAAATATAGAAT 57.464 33.333 0.00 0.00 0.00 2.40
578 580 1.760192 GCAGTCTGCAGGATTTGGAT 58.240 50.000 20.16 0.00 44.26 3.41
609 614 9.561069 CTTATTTATTTCTGCACCTACCTGTAT 57.439 33.333 0.00 0.00 0.00 2.29
618 623 4.775780 TGCACCTACCTGTATGTTACTCTT 59.224 41.667 0.00 0.00 0.00 2.85
619 624 5.953548 TGCACCTACCTGTATGTTACTCTTA 59.046 40.000 0.00 0.00 0.00 2.10
620 625 6.610020 TGCACCTACCTGTATGTTACTCTTAT 59.390 38.462 0.00 0.00 0.00 1.73
621 626 7.146648 GCACCTACCTGTATGTTACTCTTATC 58.853 42.308 0.00 0.00 0.00 1.75
622 627 7.201884 GCACCTACCTGTATGTTACTCTTATCA 60.202 40.741 0.00 0.00 0.00 2.15
650 658 8.854117 AGATATCTTTGTTTTCAAGAGCTTGTT 58.146 29.630 9.79 0.00 41.09 2.83
683 691 0.634465 AGGGCGTATTTTTCCCCCAT 59.366 50.000 0.00 0.00 40.97 4.00
691 699 4.444306 CGTATTTTTCCCCCATGCTAGAGA 60.444 45.833 0.00 0.00 0.00 3.10
692 700 4.821532 ATTTTTCCCCCATGCTAGAGAT 57.178 40.909 0.00 0.00 0.00 2.75
693 701 4.608170 TTTTTCCCCCATGCTAGAGATT 57.392 40.909 0.00 0.00 0.00 2.40
694 702 5.725551 TTTTTCCCCCATGCTAGAGATTA 57.274 39.130 0.00 0.00 0.00 1.75
695 703 4.982241 TTTCCCCCATGCTAGAGATTAG 57.018 45.455 0.00 0.00 0.00 1.73
696 704 3.923273 TCCCCCATGCTAGAGATTAGA 57.077 47.619 0.00 0.00 0.00 2.10
697 705 3.784178 TCCCCCATGCTAGAGATTAGAG 58.216 50.000 0.00 0.00 0.00 2.43
698 706 3.402708 TCCCCCATGCTAGAGATTAGAGA 59.597 47.826 0.00 0.00 0.00 3.10
817 825 3.864921 GCCGTCAGGTCAGAAGTAACAAT 60.865 47.826 0.00 0.00 40.50 2.71
887 895 6.100404 CTAGTCCGACTACTAGTACTCCAT 57.900 45.833 0.00 0.00 42.63 3.41
920 929 0.324738 TCTACCTCCCACCTCAGCTG 60.325 60.000 7.63 7.63 0.00 4.24
997 1008 3.088532 TGGTGTTGGTGGATTGATAAGC 58.911 45.455 0.00 0.00 0.00 3.09
1077 1088 4.536090 TCTTCTTGCCTGAGGAGGAAATTA 59.464 41.667 0.65 0.00 42.93 1.40
1186 1197 4.142945 CCTCTTCTGTTCTTGAATCTTGCG 60.143 45.833 0.00 0.00 0.00 4.85
1222 1233 1.610624 GGCTCCGTGATCTTGGTTGAA 60.611 52.381 0.00 0.00 0.00 2.69
1327 1338 3.842436 GGTTTCCTGTAGGTTCCCTAGAA 59.158 47.826 0.00 0.00 36.71 2.10
1430 1441 5.452078 TCTTGCTTTAATGTTCTTGTGGG 57.548 39.130 0.00 0.00 0.00 4.61
1452 1463 5.235516 GGTATTGGAGAGTCGAGTTTTGAA 58.764 41.667 0.00 0.00 0.00 2.69
1454 1465 6.371825 GGTATTGGAGAGTCGAGTTTTGAAAT 59.628 38.462 0.00 0.00 0.00 2.17
1455 1466 6.884280 ATTGGAGAGTCGAGTTTTGAAATT 57.116 33.333 0.00 0.00 0.00 1.82
1560 1571 4.319118 GGAGCGAGCTATTATTTCTTGCAC 60.319 45.833 0.00 0.00 39.18 4.57
1705 1723 2.164219 AGCAGATTGGGTGTTATTTGCG 59.836 45.455 0.00 0.00 37.07 4.85
1744 1762 0.879765 CTCGGTTCTGTAGTCGTGGT 59.120 55.000 0.00 0.00 0.00 4.16
1943 1961 5.418840 CACTTAGTTTTAGACCCATTGCCAT 59.581 40.000 0.00 0.00 0.00 4.40
1963 1981 3.992636 GCTCACAAGCTCTGAATGC 57.007 52.632 0.00 0.00 45.55 3.56
1989 2007 6.671190 TCTTGAATTTGCATGAACTAGTGTG 58.329 36.000 0.00 0.00 0.00 3.82
2001 2019 2.795329 ACTAGTGTGAATTTGCTGGGG 58.205 47.619 0.00 0.00 0.00 4.96
2327 2650 0.398318 CCCTTCCTCGGATGGATTCC 59.602 60.000 17.03 0.00 40.61 3.01
2572 2895 4.890088 TGAACAAGTACATGTACCTCACC 58.110 43.478 28.29 16.98 36.75 4.02
2655 2978 1.656441 GCAAGCACTTGGTGTCAGG 59.344 57.895 12.09 0.00 40.74 3.86
3184 3724 1.657487 CACCGCCATAGACTACGCG 60.657 63.158 3.53 3.53 44.08 6.01
3467 4023 8.961294 ACTGTTGACTTGTACTACTATAAACG 57.039 34.615 0.00 0.00 0.00 3.60
3549 4121 7.183580 TCCAGACTTTTTGTTTGTTTGTTTG 57.816 32.000 0.00 0.00 0.00 2.93
3550 4122 6.763610 TCCAGACTTTTTGTTTGTTTGTTTGT 59.236 30.769 0.00 0.00 0.00 2.83
3551 4123 7.281100 TCCAGACTTTTTGTTTGTTTGTTTGTT 59.719 29.630 0.00 0.00 0.00 2.83
3552 4124 7.912773 CCAGACTTTTTGTTTGTTTGTTTGTTT 59.087 29.630 0.00 0.00 0.00 2.83
3553 4125 9.283420 CAGACTTTTTGTTTGTTTGTTTGTTTT 57.717 25.926 0.00 0.00 0.00 2.43
3637 4210 4.381932 GCTCCCATCTACCCAAATGTTTTG 60.382 45.833 0.00 0.00 0.00 2.44
3715 4289 0.602905 CCAACCACCCGAGACTTCAC 60.603 60.000 0.00 0.00 0.00 3.18
3720 4294 2.342279 CCCGAGACTTCACGCCAA 59.658 61.111 0.00 0.00 0.00 4.52
3777 4351 1.698532 CCATTGGAGAGAGAGGGGATG 59.301 57.143 0.00 0.00 0.00 3.51
3780 4354 0.267054 TGGAGAGAGAGGGGATGCAT 59.733 55.000 0.00 0.00 0.00 3.96
3782 4356 1.422531 GAGAGAGAGGGGATGCATGT 58.577 55.000 2.46 0.00 0.00 3.21
3783 4357 1.070445 GAGAGAGAGGGGATGCATGTG 59.930 57.143 2.46 0.00 0.00 3.21
3784 4358 0.108207 GAGAGAGGGGATGCATGTGG 59.892 60.000 2.46 0.00 0.00 4.17
3785 4359 1.150081 GAGAGGGGATGCATGTGGG 59.850 63.158 2.46 0.00 0.00 4.61
3787 4361 4.147587 AGGGGATGCATGTGGGGC 62.148 66.667 2.46 0.00 0.00 5.80
3790 4364 4.462133 GGATGCATGTGGGGCCCA 62.462 66.667 24.76 24.76 0.00 5.36
3791 4365 2.123164 GATGCATGTGGGGCCCAT 60.123 61.111 31.48 12.04 35.28 4.00
3792 4366 1.153524 GATGCATGTGGGGCCCATA 59.846 57.895 31.48 28.25 35.28 2.74
3793 4367 0.251922 GATGCATGTGGGGCCCATAT 60.252 55.000 31.48 29.30 35.75 1.78
3797 4371 0.185658 CATGTGGGGCCCATATGTCA 59.814 55.000 39.65 28.73 44.49 3.58
3798 4372 0.479815 ATGTGGGGCCCATATGTCAG 59.520 55.000 31.48 0.00 34.11 3.51
3799 4373 1.151450 GTGGGGCCCATATGTCAGG 59.849 63.158 31.48 0.00 35.28 3.86
3801 4375 2.464403 GGGGCCCATATGTCAGGCT 61.464 63.158 26.86 0.00 46.31 4.58
3803 4377 0.995024 GGGCCCATATGTCAGGCTAT 59.005 55.000 19.95 0.00 46.31 2.97
3830 4487 9.787435 GTATATGTGAAGTTGTATTGGGGATAA 57.213 33.333 0.00 0.00 0.00 1.75
3855 4519 2.218603 CGGCTACACACCTTTCAAACT 58.781 47.619 0.00 0.00 0.00 2.66
3860 4524 5.221244 GGCTACACACCTTTCAAACTCAATT 60.221 40.000 0.00 0.00 0.00 2.32
3911 4614 7.542477 TGCTCTAAAATTTGACTAGTTCTCGAG 59.458 37.037 5.93 5.93 0.00 4.04
3922 4625 5.254901 ACTAGTTCTCGAGAGTAACATGGT 58.745 41.667 15.94 8.41 0.00 3.55
3929 4632 7.348080 TCTCGAGAGTAACATGGTCAATATT 57.652 36.000 12.08 0.00 0.00 1.28
3934 4637 8.573885 CGAGAGTAACATGGTCAATATTAGGTA 58.426 37.037 0.00 0.00 0.00 3.08
3943 4646 5.968167 TGGTCAATATTAGGTACTCCCAAGT 59.032 40.000 0.00 0.00 41.75 3.16
3971 4674 0.469917 CTCCGGTCATACAAGCCCAT 59.530 55.000 0.00 0.00 0.00 4.00
3993 4696 1.757118 TGGGTCGTTGGATCTCAGATC 59.243 52.381 6.05 6.05 0.00 2.75
4006 4709 3.375699 TCTCAGATCAAGGGTTAGGGAC 58.624 50.000 0.00 0.00 0.00 4.46
4007 4710 3.107601 CTCAGATCAAGGGTTAGGGACA 58.892 50.000 0.00 0.00 0.00 4.02
4008 4711 3.519510 CTCAGATCAAGGGTTAGGGACAA 59.480 47.826 0.00 0.00 0.00 3.18
4012 4715 1.074889 TCAAGGGTTAGGGACAAAGCC 59.925 52.381 0.00 0.00 43.37 4.35
4017 4720 1.653151 GTTAGGGACAAAGCCGCTAG 58.347 55.000 0.00 0.00 32.01 3.42
4025 4728 1.089920 CAAAGCCGCTAGACTTGCAT 58.910 50.000 9.55 0.00 0.00 3.96
4034 4737 5.063564 GCCGCTAGACTTGCATATAATTACC 59.936 44.000 9.55 0.00 0.00 2.85
4044 4747 5.547465 TGCATATAATTACCGGACTCTTGG 58.453 41.667 9.46 0.00 0.00 3.61
4065 4768 3.832490 GGGGAGTTTCCTACAAAATTGCT 59.168 43.478 0.00 0.00 36.57 3.91
4080 4783 2.586258 TTGCTAGAGCTCGATCCAAC 57.414 50.000 8.37 0.00 42.66 3.77
4162 4865 5.302360 ACATCTTTACAAAGTAGGCGAACA 58.698 37.500 1.86 0.00 37.31 3.18
4163 4866 5.408604 ACATCTTTACAAAGTAGGCGAACAG 59.591 40.000 1.86 0.00 37.31 3.16
4192 4895 5.128827 CCTAGTGGTTGAAGGCTATCAAGTA 59.871 44.000 10.89 3.35 39.84 2.24
4197 4900 5.938125 TGGTTGAAGGCTATCAAGTAACTTC 59.062 40.000 10.89 0.00 39.84 3.01
4203 4906 7.921214 TGAAGGCTATCAAGTAACTTCTAATCG 59.079 37.037 0.00 0.00 34.28 3.34
4211 4914 9.804758 ATCAAGTAACTTCTAATCGTTTAGGAG 57.195 33.333 16.77 16.77 43.95 3.69
4221 4924 1.066430 TCGTTTAGGAGATGCACACCC 60.066 52.381 0.00 0.00 0.00 4.61
4223 4926 2.633488 GTTTAGGAGATGCACACCCTC 58.367 52.381 5.94 2.91 0.00 4.30
4248 4951 6.404734 CCAAGAGTAACAGAGCAAAACAAAGT 60.405 38.462 0.00 0.00 0.00 2.66
4251 4954 5.880341 AGTAACAGAGCAAAACAAAGTCAC 58.120 37.500 0.00 0.00 0.00 3.67
4264 4967 5.353394 ACAAAGTCACTTGGTAGAACTCA 57.647 39.130 0.00 0.00 0.00 3.41
4266 4969 5.992217 ACAAAGTCACTTGGTAGAACTCATC 59.008 40.000 0.00 0.00 0.00 2.92
4273 4976 6.706270 TCACTTGGTAGAACTCATCAAAAGAC 59.294 38.462 0.00 0.00 0.00 3.01
4277 4980 6.231211 TGGTAGAACTCATCAAAAGACCTTC 58.769 40.000 0.00 0.00 0.00 3.46
4278 4981 6.183361 TGGTAGAACTCATCAAAAGACCTTCA 60.183 38.462 0.00 0.00 0.00 3.02
4281 4984 7.446001 AGAACTCATCAAAAGACCTTCAATC 57.554 36.000 0.00 0.00 0.00 2.67
4302 5005 4.908736 TCAAAGCTTTCTTCAAGAACACG 58.091 39.130 9.23 0.00 33.26 4.49
4303 5006 3.340337 AAGCTTTCTTCAAGAACACGC 57.660 42.857 0.00 3.39 33.26 5.34
4339 5042 7.278135 TCTCTCTCACAAAAAGGATATGGATG 58.722 38.462 0.00 0.00 0.00 3.51
4340 5043 6.359804 TCTCTCACAAAAAGGATATGGATGG 58.640 40.000 0.00 0.00 0.00 3.51
4341 5044 6.069440 TCTCTCACAAAAAGGATATGGATGGT 60.069 38.462 0.00 0.00 0.00 3.55
4342 5045 5.887598 TCTCACAAAAAGGATATGGATGGTG 59.112 40.000 0.00 0.00 0.00 4.17
4343 5046 5.579047 TCACAAAAAGGATATGGATGGTGT 58.421 37.500 0.00 0.00 0.00 4.16
4344 5047 6.726379 TCACAAAAAGGATATGGATGGTGTA 58.274 36.000 0.00 0.00 0.00 2.90
4345 5048 7.178573 TCACAAAAAGGATATGGATGGTGTAA 58.821 34.615 0.00 0.00 0.00 2.41
4346 5049 7.339212 TCACAAAAAGGATATGGATGGTGTAAG 59.661 37.037 0.00 0.00 0.00 2.34
4347 5050 7.339212 CACAAAAAGGATATGGATGGTGTAAGA 59.661 37.037 0.00 0.00 0.00 2.10
4348 5051 7.557719 ACAAAAAGGATATGGATGGTGTAAGAG 59.442 37.037 0.00 0.00 0.00 2.85
4349 5052 5.832539 AAGGATATGGATGGTGTAAGAGG 57.167 43.478 0.00 0.00 0.00 3.69
4350 5053 5.093236 AGGATATGGATGGTGTAAGAGGA 57.907 43.478 0.00 0.00 0.00 3.71
4351 5054 5.090139 AGGATATGGATGGTGTAAGAGGAG 58.910 45.833 0.00 0.00 0.00 3.69
4352 5055 5.087323 GGATATGGATGGTGTAAGAGGAGA 58.913 45.833 0.00 0.00 0.00 3.71
4353 5056 5.723887 GGATATGGATGGTGTAAGAGGAGAT 59.276 44.000 0.00 0.00 0.00 2.75
4354 5057 4.970860 ATGGATGGTGTAAGAGGAGATG 57.029 45.455 0.00 0.00 0.00 2.90
4355 5058 3.994317 TGGATGGTGTAAGAGGAGATGA 58.006 45.455 0.00 0.00 0.00 2.92
4356 5059 4.361783 TGGATGGTGTAAGAGGAGATGAA 58.638 43.478 0.00 0.00 0.00 2.57
4357 5060 4.162320 TGGATGGTGTAAGAGGAGATGAAC 59.838 45.833 0.00 0.00 0.00 3.18
4358 5061 4.407296 GGATGGTGTAAGAGGAGATGAACT 59.593 45.833 0.00 0.00 0.00 3.01
4359 5062 5.452636 GGATGGTGTAAGAGGAGATGAACTC 60.453 48.000 0.00 0.00 44.24 3.01
4360 5063 4.678256 TGGTGTAAGAGGAGATGAACTCT 58.322 43.478 0.00 0.00 45.51 3.24
4361 5064 4.464244 TGGTGTAAGAGGAGATGAACTCTG 59.536 45.833 0.00 0.00 42.93 3.35
4362 5065 4.464597 GGTGTAAGAGGAGATGAACTCTGT 59.535 45.833 0.00 0.00 42.93 3.41
4363 5066 5.406649 GTGTAAGAGGAGATGAACTCTGTG 58.593 45.833 0.00 0.00 42.93 3.66
4364 5067 5.047660 GTGTAAGAGGAGATGAACTCTGTGT 60.048 44.000 0.00 0.00 42.93 3.72
4365 5068 6.151312 GTGTAAGAGGAGATGAACTCTGTGTA 59.849 42.308 0.00 0.00 42.93 2.90
4366 5069 5.913137 AAGAGGAGATGAACTCTGTGTAG 57.087 43.478 0.00 0.00 42.93 2.74
4367 5070 4.929479 AGAGGAGATGAACTCTGTGTAGT 58.071 43.478 0.00 0.00 42.20 2.73
4368 5071 4.704540 AGAGGAGATGAACTCTGTGTAGTG 59.295 45.833 0.00 0.00 42.20 2.74
4369 5072 3.766591 AGGAGATGAACTCTGTGTAGTGG 59.233 47.826 0.00 0.00 44.37 4.00
4370 5073 3.511934 GGAGATGAACTCTGTGTAGTGGT 59.488 47.826 0.00 0.00 44.37 4.16
4371 5074 4.021016 GGAGATGAACTCTGTGTAGTGGTT 60.021 45.833 0.00 0.00 44.37 3.67
4372 5075 5.140747 AGATGAACTCTGTGTAGTGGTTC 57.859 43.478 0.00 0.00 37.76 3.62
4373 5076 4.588951 AGATGAACTCTGTGTAGTGGTTCA 59.411 41.667 8.82 8.82 43.67 3.18
4374 5077 4.746535 TGAACTCTGTGTAGTGGTTCAA 57.253 40.909 0.00 0.00 40.64 2.69
4375 5078 4.693283 TGAACTCTGTGTAGTGGTTCAAG 58.307 43.478 0.00 0.00 40.64 3.02
4376 5079 4.404394 TGAACTCTGTGTAGTGGTTCAAGA 59.596 41.667 0.00 0.00 40.64 3.02
4377 5080 5.105106 TGAACTCTGTGTAGTGGTTCAAGAA 60.105 40.000 0.00 0.00 40.64 2.52
4378 5081 4.950050 ACTCTGTGTAGTGGTTCAAGAAG 58.050 43.478 0.00 0.00 0.00 2.85
4379 5082 4.649674 ACTCTGTGTAGTGGTTCAAGAAGA 59.350 41.667 0.00 0.00 0.00 2.87
4380 5083 5.128827 ACTCTGTGTAGTGGTTCAAGAAGAA 59.871 40.000 0.00 0.00 0.00 2.52
4381 5084 5.601662 TCTGTGTAGTGGTTCAAGAAGAAG 58.398 41.667 0.00 0.00 36.78 2.85
4382 5085 5.362717 TCTGTGTAGTGGTTCAAGAAGAAGA 59.637 40.000 0.00 0.00 36.78 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.429109 ACCGTGGGGATAAATTTTCTAATTATT 57.571 29.630 0.00 0.00 33.70 1.40
27 28 9.429109 AACCGTGGGGATAAATTTTCTAATTAT 57.571 29.630 0.00 0.00 33.70 1.28
28 29 8.826293 AACCGTGGGGATAAATTTTCTAATTA 57.174 30.769 0.00 0.00 33.70 1.40
29 30 7.618117 AGAACCGTGGGGATAAATTTTCTAATT 59.382 33.333 0.00 0.00 34.71 1.40
30 31 7.123383 AGAACCGTGGGGATAAATTTTCTAAT 58.877 34.615 0.00 0.00 36.97 1.73
31 32 6.486941 AGAACCGTGGGGATAAATTTTCTAA 58.513 36.000 0.00 0.00 36.97 2.10
32 33 6.069705 AGAACCGTGGGGATAAATTTTCTA 57.930 37.500 0.00 0.00 36.97 2.10
33 34 4.930696 AGAACCGTGGGGATAAATTTTCT 58.069 39.130 0.00 0.00 36.97 2.52
34 35 5.654603 AAGAACCGTGGGGATAAATTTTC 57.345 39.130 0.00 0.00 36.97 2.29
35 36 5.279758 CCAAAGAACCGTGGGGATAAATTTT 60.280 40.000 0.00 0.00 36.97 1.82
36 37 4.221924 CCAAAGAACCGTGGGGATAAATTT 59.778 41.667 0.00 0.00 36.97 1.82
37 38 3.767131 CCAAAGAACCGTGGGGATAAATT 59.233 43.478 0.00 0.00 36.97 1.82
38 39 3.245479 ACCAAAGAACCGTGGGGATAAAT 60.245 43.478 0.00 0.00 39.39 1.40
39 40 2.108601 ACCAAAGAACCGTGGGGATAAA 59.891 45.455 0.00 0.00 39.39 1.40
40 41 1.706305 ACCAAAGAACCGTGGGGATAA 59.294 47.619 0.00 0.00 39.39 1.75
41 42 1.364269 ACCAAAGAACCGTGGGGATA 58.636 50.000 0.00 0.00 39.39 2.59
42 43 0.481128 AACCAAAGAACCGTGGGGAT 59.519 50.000 0.00 0.00 39.39 3.85
43 44 0.259356 AAACCAAAGAACCGTGGGGA 59.741 50.000 0.00 0.00 39.39 4.81
44 45 0.671796 GAAACCAAAGAACCGTGGGG 59.328 55.000 0.00 0.00 39.39 4.96
45 46 0.309612 CGAAACCAAAGAACCGTGGG 59.690 55.000 0.00 0.00 39.39 4.61
46 47 1.301423 TCGAAACCAAAGAACCGTGG 58.699 50.000 0.00 0.00 41.00 4.94
47 48 3.619233 ATTCGAAACCAAAGAACCGTG 57.381 42.857 0.00 0.00 0.00 4.94
48 49 3.499537 GGTATTCGAAACCAAAGAACCGT 59.500 43.478 18.66 0.00 36.96 4.83
49 50 3.499157 TGGTATTCGAAACCAAAGAACCG 59.501 43.478 21.98 0.00 43.99 4.44
58 59 7.893658 TCTATCCTAGAATGGTATTCGAAACC 58.106 38.462 17.44 17.44 37.53 3.27
59 60 8.794553 TCTCTATCCTAGAATGGTATTCGAAAC 58.205 37.037 0.00 1.87 33.75 2.78
60 61 8.935614 TCTCTATCCTAGAATGGTATTCGAAA 57.064 34.615 0.00 0.00 33.75 3.46
61 62 9.535170 AATCTCTATCCTAGAATGGTATTCGAA 57.465 33.333 0.00 0.00 33.75 3.71
62 63 8.961634 CAATCTCTATCCTAGAATGGTATTCGA 58.038 37.037 0.00 0.00 33.75 3.71
63 64 8.961634 TCAATCTCTATCCTAGAATGGTATTCG 58.038 37.037 0.00 0.00 33.75 3.34
66 67 9.836179 AGTTCAATCTCTATCCTAGAATGGTAT 57.164 33.333 0.00 0.00 33.75 2.73
67 68 9.303116 GAGTTCAATCTCTATCCTAGAATGGTA 57.697 37.037 0.00 0.00 33.75 3.25
68 69 7.040062 CGAGTTCAATCTCTATCCTAGAATGGT 60.040 40.741 0.00 0.00 33.75 3.55
69 70 7.040062 ACGAGTTCAATCTCTATCCTAGAATGG 60.040 40.741 0.00 0.00 33.75 3.16
70 71 7.881142 ACGAGTTCAATCTCTATCCTAGAATG 58.119 38.462 0.00 0.00 33.75 2.67
71 72 9.005777 GTACGAGTTCAATCTCTATCCTAGAAT 57.994 37.037 0.00 0.00 33.75 2.40
72 73 8.212312 AGTACGAGTTCAATCTCTATCCTAGAA 58.788 37.037 0.00 0.00 33.75 2.10
73 74 7.737869 AGTACGAGTTCAATCTCTATCCTAGA 58.262 38.462 0.00 0.00 32.83 2.43
74 75 7.118680 GGAGTACGAGTTCAATCTCTATCCTAG 59.881 44.444 0.00 0.00 32.83 3.02
75 76 6.935771 GGAGTACGAGTTCAATCTCTATCCTA 59.064 42.308 0.00 0.00 32.83 2.94
76 77 5.766174 GGAGTACGAGTTCAATCTCTATCCT 59.234 44.000 0.00 0.00 32.83 3.24
77 78 6.004408 GGAGTACGAGTTCAATCTCTATCC 57.996 45.833 0.00 0.00 32.83 2.59
94 95 1.842546 GCGTACATTCGTTCGGAGTAC 59.157 52.381 0.00 0.00 36.53 2.73
95 96 1.739466 AGCGTACATTCGTTCGGAGTA 59.261 47.619 0.00 0.00 36.53 2.59
96 97 0.524862 AGCGTACATTCGTTCGGAGT 59.475 50.000 0.00 0.00 36.53 3.85
97 98 0.914551 CAGCGTACATTCGTTCGGAG 59.085 55.000 0.00 0.00 36.53 4.63
98 99 0.457166 CCAGCGTACATTCGTTCGGA 60.457 55.000 0.00 0.00 36.53 4.55
99 100 0.457166 TCCAGCGTACATTCGTTCGG 60.457 55.000 0.00 0.00 36.53 4.30
100 101 1.517276 GATCCAGCGTACATTCGTTCG 59.483 52.381 0.00 0.00 38.77 3.95
101 102 2.535984 CAGATCCAGCGTACATTCGTTC 59.464 50.000 0.00 0.00 0.00 3.95
102 103 2.540515 CAGATCCAGCGTACATTCGTT 58.459 47.619 0.00 0.00 0.00 3.85
103 104 1.802880 GCAGATCCAGCGTACATTCGT 60.803 52.381 0.00 0.00 0.00 3.85
104 105 0.855349 GCAGATCCAGCGTACATTCG 59.145 55.000 0.00 0.00 0.00 3.34
105 106 2.131183 GAGCAGATCCAGCGTACATTC 58.869 52.381 2.47 0.00 37.01 2.67
106 107 1.536922 CGAGCAGATCCAGCGTACATT 60.537 52.381 2.47 0.00 37.01 2.71
107 108 0.031314 CGAGCAGATCCAGCGTACAT 59.969 55.000 2.47 0.00 37.01 2.29
108 109 1.029947 TCGAGCAGATCCAGCGTACA 61.030 55.000 2.47 0.00 37.01 2.90
109 110 0.100682 TTCGAGCAGATCCAGCGTAC 59.899 55.000 2.47 0.00 37.01 3.67
110 111 0.100682 GTTCGAGCAGATCCAGCGTA 59.899 55.000 0.00 0.00 37.01 4.42
111 112 1.153745 GTTCGAGCAGATCCAGCGT 60.154 57.895 0.00 0.00 37.01 5.07
112 113 1.140589 AGTTCGAGCAGATCCAGCG 59.859 57.895 1.01 0.00 37.01 5.18
113 114 1.427592 GCAGTTCGAGCAGATCCAGC 61.428 60.000 1.01 0.00 0.00 4.85
114 115 1.144565 CGCAGTTCGAGCAGATCCAG 61.145 60.000 1.01 0.00 41.67 3.86
115 116 1.153765 CGCAGTTCGAGCAGATCCA 60.154 57.895 1.01 0.00 41.67 3.41
116 117 1.139734 TCGCAGTTCGAGCAGATCC 59.860 57.895 1.01 0.00 43.16 3.36
117 118 4.794164 TCGCAGTTCGAGCAGATC 57.206 55.556 1.01 0.00 43.16 2.75
124 125 0.602638 AGGCAAATGTCGCAGTTCGA 60.603 50.000 0.00 0.00 46.29 3.71
125 126 1.075542 TAGGCAAATGTCGCAGTTCG 58.924 50.000 0.00 0.00 40.15 3.95
126 127 3.764885 ATTAGGCAAATGTCGCAGTTC 57.235 42.857 0.00 0.00 0.00 3.01
127 128 4.519540 AAATTAGGCAAATGTCGCAGTT 57.480 36.364 0.00 0.00 0.00 3.16
128 129 5.835113 ATAAATTAGGCAAATGTCGCAGT 57.165 34.783 0.00 0.00 0.00 4.40
129 130 7.275341 TGAAAATAAATTAGGCAAATGTCGCAG 59.725 33.333 0.00 0.00 0.00 5.18
130 131 7.062839 GTGAAAATAAATTAGGCAAATGTCGCA 59.937 33.333 0.00 0.00 0.00 5.10
131 132 7.062839 TGTGAAAATAAATTAGGCAAATGTCGC 59.937 33.333 0.00 0.00 0.00 5.19
132 133 8.459521 TGTGAAAATAAATTAGGCAAATGTCG 57.540 30.769 0.00 0.00 0.00 4.35
149 150 9.715121 ATGCTGAATTCTGTTTAATGTGAAAAT 57.285 25.926 13.17 0.00 0.00 1.82
150 151 9.545105 AATGCTGAATTCTGTTTAATGTGAAAA 57.455 25.926 13.17 0.00 0.00 2.29
182 183 8.689061 ACATGTTTCATGAGCATAATACAACAT 58.311 29.630 15.25 11.08 0.00 2.71
183 184 8.054152 ACATGTTTCATGAGCATAATACAACA 57.946 30.769 15.25 9.54 0.00 3.33
184 185 9.438291 GTACATGTTTCATGAGCATAATACAAC 57.562 33.333 2.30 10.35 0.00 3.32
185 186 9.394767 AGTACATGTTTCATGAGCATAATACAA 57.605 29.630 21.64 3.90 0.00 2.41
186 187 8.962884 AGTACATGTTTCATGAGCATAATACA 57.037 30.769 21.64 11.43 0.00 2.29
187 188 8.499162 GGAGTACATGTTTCATGAGCATAATAC 58.501 37.037 2.30 15.35 0.00 1.89
188 189 7.661437 GGGAGTACATGTTTCATGAGCATAATA 59.339 37.037 2.30 7.51 0.00 0.98
189 190 6.488006 GGGAGTACATGTTTCATGAGCATAAT 59.512 38.462 2.30 8.23 0.00 1.28
190 191 5.822519 GGGAGTACATGTTTCATGAGCATAA 59.177 40.000 2.30 4.41 0.00 1.90
191 192 5.130975 AGGGAGTACATGTTTCATGAGCATA 59.869 40.000 2.30 0.00 0.00 3.14
192 193 4.080129 AGGGAGTACATGTTTCATGAGCAT 60.080 41.667 2.30 8.49 0.00 3.79
193 194 3.264193 AGGGAGTACATGTTTCATGAGCA 59.736 43.478 2.30 0.00 0.00 4.26
194 195 3.873952 GAGGGAGTACATGTTTCATGAGC 59.126 47.826 2.30 7.99 0.00 4.26
195 196 4.080919 TGGAGGGAGTACATGTTTCATGAG 60.081 45.833 2.30 0.00 0.00 2.90
196 197 3.843619 TGGAGGGAGTACATGTTTCATGA 59.156 43.478 2.30 0.00 0.00 3.07
197 198 4.220693 TGGAGGGAGTACATGTTTCATG 57.779 45.455 2.30 7.99 0.00 3.07
198 199 5.440610 GAATGGAGGGAGTACATGTTTCAT 58.559 41.667 2.30 0.00 0.00 2.57
199 200 4.324254 GGAATGGAGGGAGTACATGTTTCA 60.324 45.833 2.30 0.00 0.00 2.69
200 201 4.080299 AGGAATGGAGGGAGTACATGTTTC 60.080 45.833 2.30 2.32 0.00 2.78
201 202 3.852578 AGGAATGGAGGGAGTACATGTTT 59.147 43.478 2.30 0.00 0.00 2.83
202 203 3.464828 AGGAATGGAGGGAGTACATGTT 58.535 45.455 2.30 0.00 0.00 2.71
203 204 3.136641 AGGAATGGAGGGAGTACATGT 57.863 47.619 2.69 2.69 0.00 3.21
204 205 5.630415 TTTAGGAATGGAGGGAGTACATG 57.370 43.478 0.00 0.00 0.00 3.21
205 206 9.629649 TTATATTTAGGAATGGAGGGAGTACAT 57.370 33.333 0.00 0.00 0.00 2.29
206 207 9.101325 CTTATATTTAGGAATGGAGGGAGTACA 57.899 37.037 0.00 0.00 0.00 2.90
207 208 9.102453 ACTTATATTTAGGAATGGAGGGAGTAC 57.898 37.037 0.00 0.00 0.00 2.73
208 209 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
209 210 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
210 211 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
211 212 8.242325 AGAGACTTATATTTAGGAATGGAGGGA 58.758 37.037 0.00 0.00 0.00 4.20
212 213 8.442660 AGAGACTTATATTTAGGAATGGAGGG 57.557 38.462 0.00 0.00 0.00 4.30
238 239 9.976511 CCGTAGTAGTCCATATTGAAATTCTAA 57.023 33.333 0.00 0.00 0.00 2.10
239 240 9.358406 TCCGTAGTAGTCCATATTGAAATTCTA 57.642 33.333 0.00 0.00 0.00 2.10
240 241 8.246430 TCCGTAGTAGTCCATATTGAAATTCT 57.754 34.615 0.00 0.00 0.00 2.40
241 242 8.926710 CATCCGTAGTAGTCCATATTGAAATTC 58.073 37.037 0.00 0.00 0.00 2.17
242 243 8.429641 ACATCCGTAGTAGTCCATATTGAAATT 58.570 33.333 0.00 0.00 0.00 1.82
243 244 7.963532 ACATCCGTAGTAGTCCATATTGAAAT 58.036 34.615 0.00 0.00 0.00 2.17
244 245 7.356089 ACATCCGTAGTAGTCCATATTGAAA 57.644 36.000 0.00 0.00 0.00 2.69
245 246 6.971726 ACATCCGTAGTAGTCCATATTGAA 57.028 37.500 0.00 0.00 0.00 2.69
246 247 9.916360 ATATACATCCGTAGTAGTCCATATTGA 57.084 33.333 0.00 0.00 0.00 2.57
251 252 7.710044 CGTCTATATACATCCGTAGTAGTCCAT 59.290 40.741 0.00 0.00 0.00 3.41
252 253 7.038048 CGTCTATATACATCCGTAGTAGTCCA 58.962 42.308 0.00 0.00 0.00 4.02
253 254 7.038659 ACGTCTATATACATCCGTAGTAGTCC 58.961 42.308 0.00 0.00 0.00 3.85
254 255 9.232082 CTACGTCTATATACATCCGTAGTAGTC 57.768 40.741 0.00 0.00 41.48 2.59
261 262 9.149225 CTCTAAACTACGTCTATATACATCCGT 57.851 37.037 0.00 0.00 0.00 4.69
262 263 9.149225 ACTCTAAACTACGTCTATATACATCCG 57.851 37.037 0.00 0.00 0.00 4.18
271 272 9.170734 TGAATGTACACTCTAAACTACGTCTAT 57.829 33.333 5.83 0.00 0.00 1.98
272 273 8.446273 GTGAATGTACACTCTAAACTACGTCTA 58.554 37.037 5.83 0.00 37.73 2.59
273 274 7.174599 AGTGAATGTACACTCTAAACTACGTCT 59.825 37.037 5.83 0.00 46.36 4.18
274 275 7.303998 AGTGAATGTACACTCTAAACTACGTC 58.696 38.462 5.83 0.00 46.36 4.34
275 276 7.211966 AGTGAATGTACACTCTAAACTACGT 57.788 36.000 5.83 0.00 46.36 3.57
287 288 5.048782 TGGAGCAAAATGAGTGAATGTACAC 60.049 40.000 0.00 0.00 40.60 2.90
288 289 5.069318 TGGAGCAAAATGAGTGAATGTACA 58.931 37.500 0.00 0.00 0.00 2.90
289 290 5.627499 TGGAGCAAAATGAGTGAATGTAC 57.373 39.130 0.00 0.00 0.00 2.90
290 291 7.557358 ACATATGGAGCAAAATGAGTGAATGTA 59.443 33.333 7.80 0.00 0.00 2.29
291 292 6.379133 ACATATGGAGCAAAATGAGTGAATGT 59.621 34.615 7.80 0.00 0.00 2.71
292 293 6.802608 ACATATGGAGCAAAATGAGTGAATG 58.197 36.000 7.80 0.00 0.00 2.67
293 294 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
294 295 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
295 296 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
296 297 6.017605 GGACTACATATGGAGCAAAATGAGTG 60.018 42.308 15.30 0.00 0.00 3.51
297 298 6.058183 GGACTACATATGGAGCAAAATGAGT 58.942 40.000 15.30 0.00 0.00 3.41
298 299 6.057533 TGGACTACATATGGAGCAAAATGAG 58.942 40.000 15.30 0.00 0.00 2.90
299 300 6.000246 TGGACTACATATGGAGCAAAATGA 58.000 37.500 15.30 0.00 0.00 2.57
300 301 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
301 302 9.017509 CATTATGGACTACATATGGAGCAAAAT 57.982 33.333 15.30 6.56 41.49 1.82
302 303 7.448161 CCATTATGGACTACATATGGAGCAAAA 59.552 37.037 15.30 3.41 40.96 2.44
303 304 6.942005 CCATTATGGACTACATATGGAGCAAA 59.058 38.462 15.30 0.66 40.96 3.68
304 305 6.272090 TCCATTATGGACTACATATGGAGCAA 59.728 38.462 15.30 1.98 42.67 3.91
305 306 5.784906 TCCATTATGGACTACATATGGAGCA 59.215 40.000 15.30 6.30 42.67 4.26
306 307 6.299805 TCCATTATGGACTACATATGGAGC 57.700 41.667 15.30 7.75 42.67 4.70
336 337 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
337 338 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
338 339 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
339 340 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
340 341 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
341 342 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
342 343 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
343 344 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
344 345 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
345 346 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
346 347 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
347 348 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
348 349 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
349 350 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
350 351 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
351 352 3.462579 AGAATCTACTCCCTCCGTTCCTA 59.537 47.826 0.00 0.00 0.00 2.94
352 353 2.245287 AGAATCTACTCCCTCCGTTCCT 59.755 50.000 0.00 0.00 0.00 3.36
353 354 2.668625 AGAATCTACTCCCTCCGTTCC 58.331 52.381 0.00 0.00 0.00 3.62
354 355 5.848833 TTTAGAATCTACTCCCTCCGTTC 57.151 43.478 0.00 0.00 0.00 3.95
355 356 6.809976 AATTTAGAATCTACTCCCTCCGTT 57.190 37.500 0.00 0.00 0.00 4.44
356 357 6.837568 TGTAATTTAGAATCTACTCCCTCCGT 59.162 38.462 0.00 0.00 0.00 4.69
357 358 7.286215 TGTAATTTAGAATCTACTCCCTCCG 57.714 40.000 0.00 0.00 0.00 4.63
358 359 9.495572 CATTGTAATTTAGAATCTACTCCCTCC 57.504 37.037 0.00 0.00 0.00 4.30
389 390 4.202245 TGTAGAACATCTAACCAGCCAC 57.798 45.455 0.00 0.00 29.58 5.01
403 404 8.801715 TCAGCATTGAAATCTTTTTGTAGAAC 57.198 30.769 0.00 0.00 0.00 3.01
405 406 9.985730 AATTCAGCATTGAAATCTTTTTGTAGA 57.014 25.926 0.00 0.00 45.82 2.59
415 416 7.276218 TCCGAATTCAAATTCAGCATTGAAATC 59.724 33.333 14.11 5.82 45.56 2.17
416 417 7.098477 TCCGAATTCAAATTCAGCATTGAAAT 58.902 30.769 14.11 0.00 45.56 2.17
417 418 6.453943 TCCGAATTCAAATTCAGCATTGAAA 58.546 32.000 14.11 0.00 45.56 2.69
418 419 6.023357 TCCGAATTCAAATTCAGCATTGAA 57.977 33.333 14.11 3.71 46.23 2.69
425 427 5.300969 TGCTTCTCCGAATTCAAATTCAG 57.699 39.130 14.11 4.71 43.85 3.02
427 429 7.225538 TCTCTATGCTTCTCCGAATTCAAATTC 59.774 37.037 6.22 5.56 41.02 2.17
442 444 3.472652 TCGGAGTCTCTCTCTATGCTTC 58.527 50.000 0.00 0.00 42.40 3.86
578 580 9.609346 GGTAGGTGCAGAAATAAATAAGAAGTA 57.391 33.333 0.00 0.00 0.00 2.24
620 625 9.896645 AGCTCTTGAAAACAAAGATATCTATGA 57.103 29.630 5.46 0.00 33.34 2.15
650 658 5.975693 ATACGCCCTTCAGAAATTTGAAA 57.024 34.783 0.00 0.00 36.69 2.69
693 701 9.214957 CCAAATACGCCAACATATATTTCTCTA 57.785 33.333 0.00 0.00 0.00 2.43
694 702 7.174946 CCCAAATACGCCAACATATATTTCTCT 59.825 37.037 0.00 0.00 0.00 3.10
695 703 7.174253 TCCCAAATACGCCAACATATATTTCTC 59.826 37.037 0.00 0.00 0.00 2.87
696 704 7.001674 TCCCAAATACGCCAACATATATTTCT 58.998 34.615 0.00 0.00 0.00 2.52
697 705 7.040686 AGTCCCAAATACGCCAACATATATTTC 60.041 37.037 0.00 0.00 0.00 2.17
698 706 6.775629 AGTCCCAAATACGCCAACATATATTT 59.224 34.615 0.00 0.00 0.00 1.40
706 714 1.816074 TGAGTCCCAAATACGCCAAC 58.184 50.000 0.00 0.00 0.00 3.77
887 895 2.563179 GAGGTAGAGTGAGCAGTTGGAA 59.437 50.000 0.00 0.00 0.00 3.53
920 929 2.093869 TGATTCTGCCCACTTACGTACC 60.094 50.000 0.00 0.00 0.00 3.34
1186 1197 3.414700 CCGACACAAGCACTCCGC 61.415 66.667 0.00 0.00 42.91 5.54
1222 1233 5.648092 GGTGTCCAAGTAGCAAAATATCAGT 59.352 40.000 0.00 0.00 0.00 3.41
1430 1441 6.780706 TTTCAAAACTCGACTCTCCAATAC 57.219 37.500 0.00 0.00 0.00 1.89
1455 1466 4.757657 TGCAATAAGGCGTAGAGTGAAAAA 59.242 37.500 0.00 0.00 36.28 1.94
1476 1487 4.808558 TGTCAATAACCAAATCAGCTTGC 58.191 39.130 0.00 0.00 0.00 4.01
1659 1670 9.734620 CTTCTCACAATCATTCAACTAACAAAA 57.265 29.630 0.00 0.00 0.00 2.44
1660 1671 7.862372 GCTTCTCACAATCATTCAACTAACAAA 59.138 33.333 0.00 0.00 0.00 2.83
1661 1672 7.013178 TGCTTCTCACAATCATTCAACTAACAA 59.987 33.333 0.00 0.00 0.00 2.83
1662 1673 6.486320 TGCTTCTCACAATCATTCAACTAACA 59.514 34.615 0.00 0.00 0.00 2.41
1663 1674 6.902341 TGCTTCTCACAATCATTCAACTAAC 58.098 36.000 0.00 0.00 0.00 2.34
1712 1730 1.821061 AACCGAGCAGGAGACCAGTG 61.821 60.000 5.19 0.00 45.00 3.66
1713 1731 1.534235 AACCGAGCAGGAGACCAGT 60.534 57.895 5.19 0.00 45.00 4.00
1744 1762 1.985614 CAGGTGAGTGATCTGGGCA 59.014 57.895 0.00 0.00 0.00 5.36
1930 1948 1.133976 GTGAGCTATGGCAATGGGTCT 60.134 52.381 16.51 0.00 41.09 3.85
1963 1981 7.325338 CACACTAGTTCATGCAAATTCAAGAAG 59.675 37.037 0.00 0.00 0.00 2.85
1989 2007 4.344359 TGTTTTTACCCCCAGCAAATTC 57.656 40.909 0.00 0.00 0.00 2.17
2093 2387 5.894298 ATGATAGGCACAAGAGTAATGGA 57.106 39.130 0.00 0.00 0.00 3.41
2258 2581 5.003804 GGATTTCTCTACTGGCTTCAACAA 58.996 41.667 0.00 0.00 0.00 2.83
2327 2650 4.634883 CCTCAACTCCTTGACTTCATCATG 59.365 45.833 0.00 0.00 37.11 3.07
2494 2817 2.583441 CCTCGTCCAGACAGCCCAA 61.583 63.158 0.00 0.00 0.00 4.12
2572 2895 0.035458 GCCTCATATCAACCCTCCCG 59.965 60.000 0.00 0.00 0.00 5.14
2764 3267 7.379529 GCAAGTGTATGTATATGTTGCCAAATC 59.620 37.037 0.00 0.00 34.16 2.17
2941 3477 1.134280 GTGCCACATATCTGAGCCAGT 60.134 52.381 0.00 0.00 32.61 4.00
3058 3594 1.213926 ACCTTCTTCCTCATCATGGCC 59.786 52.381 0.00 0.00 0.00 5.36
3175 3711 2.406205 GAGGATGTCCGCGTAGTCT 58.594 57.895 4.92 0.00 42.08 3.24
3184 3724 1.550976 ACCAGAAAGTCGAGGATGTCC 59.449 52.381 0.00 0.00 0.00 4.02
3467 4023 7.843490 TCTTTGGCACATGTAGAGTAAATAC 57.157 36.000 0.00 0.00 39.30 1.89
3471 4027 4.695455 GCTTCTTTGGCACATGTAGAGTAA 59.305 41.667 0.00 0.00 39.30 2.24
3478 4034 4.935352 TTTAAGCTTCTTTGGCACATGT 57.065 36.364 0.00 0.00 39.30 3.21
3611 4183 1.668826 TTTGGGTAGATGGGAGCTGT 58.331 50.000 0.00 0.00 0.00 4.40
3734 4308 4.819761 GGTGAGGCGCGCATCTGA 62.820 66.667 40.12 23.23 0.00 3.27
3755 4329 1.081174 TCCCCTCTCTCTCCAATGGTT 59.919 52.381 0.00 0.00 0.00 3.67
3777 4351 1.152483 ACATATGGGCCCCACATGC 60.152 57.895 21.12 0.00 41.68 4.06
3780 4354 1.644437 CCTGACATATGGGCCCCACA 61.644 60.000 22.27 0.00 35.80 4.17
3782 4356 2.766925 GCCTGACATATGGGCCCCA 61.767 63.158 22.27 4.05 39.96 4.96
3783 4357 1.133809 TAGCCTGACATATGGGCCCC 61.134 60.000 22.27 2.17 46.31 5.80
3784 4358 0.995024 ATAGCCTGACATATGGGCCC 59.005 55.000 17.59 17.59 46.31 5.80
3785 4359 1.352352 ACATAGCCTGACATATGGGCC 59.648 52.381 15.45 0.00 46.31 5.80
3787 4361 6.988580 CACATATACATAGCCTGACATATGGG 59.011 42.308 7.80 0.00 37.69 4.00
3788 4362 7.785033 TCACATATACATAGCCTGACATATGG 58.215 38.462 7.80 0.00 37.69 2.74
3790 4364 9.040259 ACTTCACATATACATAGCCTGACATAT 57.960 33.333 0.00 0.00 0.00 1.78
3791 4365 8.422577 ACTTCACATATACATAGCCTGACATA 57.577 34.615 0.00 0.00 0.00 2.29
3792 4366 7.308450 ACTTCACATATACATAGCCTGACAT 57.692 36.000 0.00 0.00 0.00 3.06
3793 4367 6.731292 ACTTCACATATACATAGCCTGACA 57.269 37.500 0.00 0.00 0.00 3.58
3794 4368 6.986817 ACAACTTCACATATACATAGCCTGAC 59.013 38.462 0.00 0.00 0.00 3.51
3795 4369 7.124573 ACAACTTCACATATACATAGCCTGA 57.875 36.000 0.00 0.00 0.00 3.86
3797 4371 9.494271 CAATACAACTTCACATATACATAGCCT 57.506 33.333 0.00 0.00 0.00 4.58
3798 4372 8.721478 CCAATACAACTTCACATATACATAGCC 58.279 37.037 0.00 0.00 0.00 3.93
3799 4373 8.721478 CCCAATACAACTTCACATATACATAGC 58.279 37.037 0.00 0.00 0.00 2.97
3801 4375 8.939932 TCCCCAATACAACTTCACATATACATA 58.060 33.333 0.00 0.00 0.00 2.29
3803 4377 7.201702 TCCCCAATACAACTTCACATATACA 57.798 36.000 0.00 0.00 0.00 2.29
3855 4519 7.231317 CCAGCAGCTCCCTAATAAATTAATTGA 59.769 37.037 0.39 0.00 0.00 2.57
3860 4524 5.606749 TCTCCAGCAGCTCCCTAATAAATTA 59.393 40.000 0.00 0.00 0.00 1.40
3872 4536 4.442018 GAGCATCTCCAGCAGCTC 57.558 61.111 0.00 0.00 45.50 4.09
3911 4614 9.694137 GAGTACCTAATATTGACCATGTTACTC 57.306 37.037 0.00 0.00 0.00 2.59
3922 4625 6.553852 GGAGACTTGGGAGTACCTAATATTGA 59.446 42.308 0.00 0.00 41.11 2.57
3929 4632 2.653366 ACAGGAGACTTGGGAGTACCTA 59.347 50.000 0.00 0.00 39.29 3.08
3934 4637 0.472734 AGCACAGGAGACTTGGGAGT 60.473 55.000 0.00 0.00 40.21 3.85
3943 4646 0.033503 TATGACCGGAGCACAGGAGA 60.034 55.000 9.46 0.00 35.41 3.71
3971 4674 0.608130 CTGAGATCCAACGACCCACA 59.392 55.000 0.00 0.00 0.00 4.17
3993 4696 1.545841 GGCTTTGTCCCTAACCCTTG 58.454 55.000 0.00 0.00 0.00 3.61
4006 4709 1.089920 ATGCAAGTCTAGCGGCTTTG 58.910 50.000 8.26 7.84 33.85 2.77
4007 4710 2.691409 TATGCAAGTCTAGCGGCTTT 57.309 45.000 8.26 0.00 33.85 3.51
4008 4711 2.918712 ATATGCAAGTCTAGCGGCTT 57.081 45.000 8.26 0.00 33.85 4.35
4012 4715 5.288712 CCGGTAATTATATGCAAGTCTAGCG 59.711 44.000 0.00 0.00 33.85 4.26
4017 4720 6.456501 AGAGTCCGGTAATTATATGCAAGTC 58.543 40.000 0.00 0.00 0.00 3.01
4025 4728 4.818447 TCCCCAAGAGTCCGGTAATTATA 58.182 43.478 0.00 0.00 0.00 0.98
4044 4747 5.944007 TCTAGCAATTTTGTAGGAAACTCCC 59.056 40.000 0.00 0.00 43.67 4.30
4052 4755 4.433615 TCGAGCTCTAGCAATTTTGTAGG 58.566 43.478 12.85 0.00 45.16 3.18
4055 4758 3.873952 GGATCGAGCTCTAGCAATTTTGT 59.126 43.478 12.85 0.00 45.16 2.83
4065 4768 1.734137 GCCGTTGGATCGAGCTCTA 59.266 57.895 12.85 0.00 0.00 2.43
4092 4795 2.103094 TGAAATATCAGGTGCTCCCGAG 59.897 50.000 0.00 0.00 38.74 4.63
4162 4865 0.247736 CTTCAACCACTAGGCTCGCT 59.752 55.000 0.00 0.00 39.06 4.93
4163 4866 0.741221 CCTTCAACCACTAGGCTCGC 60.741 60.000 0.00 0.00 39.06 5.03
4170 4873 6.212791 AGTTACTTGATAGCCTTCAACCACTA 59.787 38.462 0.00 0.00 32.39 2.74
4192 4895 6.535508 GTGCATCTCCTAAACGATTAGAAGTT 59.464 38.462 13.52 0.00 40.90 2.66
4197 4900 4.508124 GGTGTGCATCTCCTAAACGATTAG 59.492 45.833 5.52 5.52 38.61 1.73
4203 4906 2.633488 GAGGGTGTGCATCTCCTAAAC 58.367 52.381 4.94 0.00 0.00 2.01
4211 4914 0.326264 ACTCTTGGAGGGTGTGCATC 59.674 55.000 0.00 0.00 33.35 3.91
4221 4924 4.816385 TGTTTTGCTCTGTTACTCTTGGAG 59.184 41.667 0.00 0.00 35.52 3.86
4223 4926 5.499139 TTGTTTTGCTCTGTTACTCTTGG 57.501 39.130 0.00 0.00 0.00 3.61
4248 4951 6.706270 GTCTTTTGATGAGTTCTACCAAGTGA 59.294 38.462 0.00 0.00 0.00 3.41
4251 4954 6.234177 AGGTCTTTTGATGAGTTCTACCAAG 58.766 40.000 0.00 0.00 0.00 3.61
4264 4967 6.661304 AGCTTTGATTGAAGGTCTTTTGAT 57.339 33.333 0.00 0.00 32.23 2.57
4266 4969 6.982724 AGAAAGCTTTGATTGAAGGTCTTTTG 59.017 34.615 18.30 0.00 36.42 2.44
4273 4976 6.742109 TCTTGAAGAAAGCTTTGATTGAAGG 58.258 36.000 18.30 6.32 35.69 3.46
4277 4980 6.075205 CGTGTTCTTGAAGAAAGCTTTGATTG 60.075 38.462 18.30 2.05 35.75 2.67
4278 4981 5.973565 CGTGTTCTTGAAGAAAGCTTTGATT 59.026 36.000 18.30 11.15 35.75 2.57
4281 4984 3.483558 GCGTGTTCTTGAAGAAAGCTTTG 59.516 43.478 18.30 0.50 35.75 2.77
4302 5005 0.955905 GAGAGAGATCCTACGGGTGC 59.044 60.000 0.00 0.00 0.00 5.01
4303 5006 1.950909 GTGAGAGAGATCCTACGGGTG 59.049 57.143 0.00 0.00 0.00 4.61
4339 5042 4.464597 ACAGAGTTCATCTCCTCTTACACC 59.535 45.833 0.00 0.00 43.71 4.16
4340 5043 5.047660 ACACAGAGTTCATCTCCTCTTACAC 60.048 44.000 0.00 0.00 43.71 2.90
4341 5044 5.080337 ACACAGAGTTCATCTCCTCTTACA 58.920 41.667 0.00 0.00 43.71 2.41
4342 5045 5.652994 ACACAGAGTTCATCTCCTCTTAC 57.347 43.478 0.00 0.00 43.71 2.34
4343 5046 6.375736 CACTACACAGAGTTCATCTCCTCTTA 59.624 42.308 0.00 0.00 43.71 2.10
4344 5047 5.184864 CACTACACAGAGTTCATCTCCTCTT 59.815 44.000 0.00 0.00 43.71 2.85
4345 5048 4.704540 CACTACACAGAGTTCATCTCCTCT 59.295 45.833 0.00 0.00 43.71 3.69
4346 5049 4.142271 CCACTACACAGAGTTCATCTCCTC 60.142 50.000 0.00 0.00 43.71 3.71
4347 5050 3.766591 CCACTACACAGAGTTCATCTCCT 59.233 47.826 0.00 0.00 43.71 3.69
4348 5051 3.511934 ACCACTACACAGAGTTCATCTCC 59.488 47.826 0.00 0.00 43.71 3.71
4349 5052 4.792521 ACCACTACACAGAGTTCATCTC 57.207 45.455 0.00 0.00 43.05 2.75
4350 5053 4.588951 TGAACCACTACACAGAGTTCATCT 59.411 41.667 0.00 0.00 40.43 2.90
4351 5054 4.883083 TGAACCACTACACAGAGTTCATC 58.117 43.478 0.00 0.00 40.43 2.92
4352 5055 4.955811 TGAACCACTACACAGAGTTCAT 57.044 40.909 0.00 0.00 40.43 2.57
4353 5056 4.404394 TCTTGAACCACTACACAGAGTTCA 59.596 41.667 0.00 0.00 41.96 3.18
4354 5057 4.945246 TCTTGAACCACTACACAGAGTTC 58.055 43.478 0.00 0.00 38.23 3.01
4355 5058 5.128827 TCTTCTTGAACCACTACACAGAGTT 59.871 40.000 0.00 0.00 0.00 3.01
4356 5059 4.649674 TCTTCTTGAACCACTACACAGAGT 59.350 41.667 0.00 0.00 0.00 3.24
4357 5060 5.201713 TCTTCTTGAACCACTACACAGAG 57.798 43.478 0.00 0.00 0.00 3.35
4358 5061 5.362717 TCTTCTTCTTGAACCACTACACAGA 59.637 40.000 0.00 0.00 0.00 3.41
4359 5062 5.601662 TCTTCTTCTTGAACCACTACACAG 58.398 41.667 0.00 0.00 0.00 3.66
4360 5063 5.607939 TCTTCTTCTTGAACCACTACACA 57.392 39.130 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.