Multiple sequence alignment - TraesCS5B01G122400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G122400 chr5B 100.000 4597 0 0 1 4597 220324802 220329398 0.000000e+00 8490.0
1 TraesCS5B01G122400 chr5B 91.870 123 9 1 260 382 462141491 462141612 2.200000e-38 171.0
2 TraesCS5B01G122400 chr5D 93.677 2309 96 26 1673 3969 207164523 207166793 0.000000e+00 3410.0
3 TraesCS5B01G122400 chr5D 91.686 1275 52 24 371 1621 207163279 207164523 0.000000e+00 1718.0
4 TraesCS5B01G122400 chr5D 91.154 260 21 2 1 258 207163000 207163259 7.320000e-93 351.0
5 TraesCS5B01G122400 chr5D 100.000 31 0 0 3963 3993 548356637 548356607 1.790000e-04 58.4
6 TraesCS5B01G122400 chr5A 92.475 2259 91 33 1665 3886 266997726 266999942 0.000000e+00 3157.0
7 TraesCS5B01G122400 chr5A 96.941 948 28 1 683 1629 266996780 266997727 0.000000e+00 1589.0
8 TraesCS5B01G122400 chr5A 85.009 547 55 20 4071 4597 20815830 20815291 8.760000e-147 531.0
9 TraesCS5B01G122400 chr5A 92.437 119 9 0 260 378 136511704 136511822 2.200000e-38 171.0
10 TraesCS5B01G122400 chr6B 82.857 665 64 26 3967 4592 122971971 122972624 6.720000e-153 551.0
11 TraesCS5B01G122400 chr2D 82.422 677 70 22 3961 4597 367987222 367987889 3.130000e-151 545.0
12 TraesCS5B01G122400 chr2D 82.239 670 71 26 3968 4597 50521399 50520738 6.770000e-148 534.0
13 TraesCS5B01G122400 chr2D 82.063 669 73 33 3968 4597 50496418 50495758 1.130000e-145 527.0
14 TraesCS5B01G122400 chr2D 86.680 488 45 16 4125 4597 600993218 600992736 1.470000e-144 523.0
15 TraesCS5B01G122400 chr6A 89.362 423 37 5 4182 4597 595916536 595916115 4.070000e-145 525.0
16 TraesCS5B01G122400 chr1B 88.636 440 37 11 4167 4597 643809579 643810014 1.470000e-144 523.0
17 TraesCS5B01G122400 chr1B 93.966 116 7 0 260 375 377840522 377840407 4.730000e-40 176.0
18 TraesCS5B01G122400 chr1B 86.441 59 8 0 635 693 305541277 305541335 1.070000e-06 65.8
19 TraesCS5B01G122400 chr7A 83.272 544 66 22 4071 4597 732615131 732614596 1.160000e-130 477.0
20 TraesCS5B01G122400 chr7A 89.873 79 6 2 3968 4046 99678490 99678566 2.930000e-17 100.0
21 TraesCS5B01G122400 chr2B 94.828 116 4 2 260 374 436261721 436261835 3.650000e-41 180.0
22 TraesCS5B01G122400 chr7B 90.441 136 12 1 260 394 646052679 646052814 1.310000e-40 178.0
23 TraesCS5B01G122400 chr7B 93.913 115 7 0 260 374 579349507 579349393 1.700000e-39 174.0
24 TraesCS5B01G122400 chr7B 86.585 82 9 2 3967 4047 477439292 477439212 6.330000e-14 89.8
25 TraesCS5B01G122400 chr7B 100.000 30 0 0 3964 3993 2433480 2433451 6.430000e-04 56.5
26 TraesCS5B01G122400 chr4A 94.737 114 6 0 260 373 652852351 652852238 1.310000e-40 178.0
27 TraesCS5B01G122400 chr4B 92.437 119 9 0 260 378 363643300 363643182 2.200000e-38 171.0
28 TraesCS5B01G122400 chr4B 96.875 32 1 0 2888 2919 602659515 602659484 2.000000e-03 54.7
29 TraesCS5B01G122400 chr1A 92.437 119 9 0 260 378 505778122 505778004 2.200000e-38 171.0
30 TraesCS5B01G122400 chr4D 88.462 78 7 2 3970 4047 485615911 485615986 4.900000e-15 93.5
31 TraesCS5B01G122400 chr7D 92.500 40 1 2 630 669 594919762 594919725 6.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G122400 chr5B 220324802 220329398 4596 False 8490.000000 8490 100.000000 1 4597 1 chr5B.!!$F1 4596
1 TraesCS5B01G122400 chr5D 207163000 207166793 3793 False 1826.333333 3410 92.172333 1 3969 3 chr5D.!!$F1 3968
2 TraesCS5B01G122400 chr5A 266996780 266999942 3162 False 2373.000000 3157 94.708000 683 3886 2 chr5A.!!$F2 3203
3 TraesCS5B01G122400 chr5A 20815291 20815830 539 True 531.000000 531 85.009000 4071 4597 1 chr5A.!!$R1 526
4 TraesCS5B01G122400 chr6B 122971971 122972624 653 False 551.000000 551 82.857000 3967 4592 1 chr6B.!!$F1 625
5 TraesCS5B01G122400 chr2D 367987222 367987889 667 False 545.000000 545 82.422000 3961 4597 1 chr2D.!!$F1 636
6 TraesCS5B01G122400 chr2D 50520738 50521399 661 True 534.000000 534 82.239000 3968 4597 1 chr2D.!!$R2 629
7 TraesCS5B01G122400 chr2D 50495758 50496418 660 True 527.000000 527 82.063000 3968 4597 1 chr2D.!!$R1 629
8 TraesCS5B01G122400 chr7A 732614596 732615131 535 True 477.000000 477 83.272000 4071 4597 1 chr7A.!!$R1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 489 0.034896 GAGGAGACCAAAAGCCGACA 59.965 55.0 0.00 0.00 0.00 4.35 F
525 539 0.109132 CAAAGGAAGTGCCGCATTCC 60.109 55.0 19.13 19.13 44.49 3.01 F
534 548 0.611618 TGCCGCATTCCCTTGTCAAT 60.612 50.0 0.00 0.00 0.00 2.57 F
784 810 0.681887 TCGCTTACCGGATCCAGACA 60.682 55.0 9.46 0.00 37.59 3.41 F
1658 1688 0.036875 AGGGTACTTGTGGAAGCAGC 59.963 55.0 0.00 0.00 31.68 5.25 F
1659 1689 0.036875 GGGTACTTGTGGAAGCAGCT 59.963 55.0 0.00 0.00 31.68 4.24 F
1665 1695 0.106769 TTGTGGAAGCAGCTTGACCA 60.107 50.0 13.91 12.10 0.00 4.02 F
2896 2950 0.179006 CCCTAATCTCAAGGCCCAGC 60.179 60.0 0.00 0.00 32.34 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 1669 0.036875 GCTGCTTCCACAAGTACCCT 59.963 55.0 0.00 0.00 31.45 4.34 R
1640 1670 0.036875 AGCTGCTTCCACAAGTACCC 59.963 55.0 0.00 0.00 31.45 3.69 R
1646 1676 0.106769 TGGTCAAGCTGCTTCCACAA 60.107 50.0 16.34 6.39 0.00 3.33 R
1951 1996 0.183971 AATTTCCACCGTCACCACCA 59.816 50.0 0.00 0.00 0.00 4.17 R
2873 2922 0.179006 GGCCTTGAGATTAGGGGCTG 60.179 60.0 0.00 0.00 42.14 4.85 R
2897 2951 0.314935 GTGAACATGTGTTGGGCTGG 59.685 55.0 0.00 0.00 38.56 4.85 R
3221 3276 0.546122 ATCGCCCTCTGCAAACCATA 59.454 50.0 0.00 0.00 41.33 2.74 R
4190 4298 0.040157 CGCCAACATGAACTGTGTGG 60.040 55.0 0.00 0.00 38.39 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 127 1.382833 GTGGGGTAGGGGAGGAGAC 60.383 68.421 0.00 0.00 0.00 3.36
129 131 0.338814 GGGTAGGGGAGGAGACAAGA 59.661 60.000 0.00 0.00 0.00 3.02
137 139 1.068741 GGAGGAGACAAGAACGTGTGT 59.931 52.381 0.00 0.00 0.00 3.72
142 144 0.575390 GACAAGAACGTGTGTGTCCG 59.425 55.000 12.44 0.00 35.42 4.79
144 146 2.235016 AAGAACGTGTGTGTCCGCG 61.235 57.895 0.00 0.00 43.62 6.46
163 165 4.619760 CCGCGCGATCTATATTAACAAAGA 59.380 41.667 34.63 0.00 0.00 2.52
166 168 6.033513 CGCGCGATCTATATTAACAAAGATGA 59.966 38.462 28.94 0.00 0.00 2.92
180 182 6.653526 ACAAAGATGAATGTGGTTGAATCA 57.346 33.333 0.00 0.00 0.00 2.57
192 194 4.859798 GTGGTTGAATCAGTCTTCTACTCG 59.140 45.833 0.00 0.00 35.76 4.18
193 195 4.765339 TGGTTGAATCAGTCTTCTACTCGA 59.235 41.667 0.00 0.00 35.76 4.04
194 196 5.096849 GGTTGAATCAGTCTTCTACTCGAC 58.903 45.833 0.00 0.00 35.76 4.20
200 202 0.679321 GTCTTCTACTCGACCGGGGT 60.679 60.000 6.32 1.32 0.00 4.95
209 211 1.477700 CTCGACCGGGGTACATAAACA 59.522 52.381 6.32 0.00 0.00 2.83
219 221 5.355910 CGGGGTACATAAACAGCTTTGTTAT 59.644 40.000 0.00 0.00 0.00 1.89
227 230 3.449746 ACAGCTTTGTTATGGGCCTTA 57.550 42.857 4.53 0.00 0.00 2.69
246 249 2.048603 GGTGTCCATGCAAGAGCCC 61.049 63.158 0.00 0.00 41.13 5.19
258 261 2.159114 GCAAGAGCCCACTTGAAAAACA 60.159 45.455 16.43 0.00 46.85 2.83
259 262 3.447742 CAAGAGCCCACTTGAAAAACAC 58.552 45.455 9.36 0.00 46.85 3.32
260 263 1.676006 AGAGCCCACTTGAAAAACACG 59.324 47.619 0.00 0.00 0.00 4.49
261 264 0.744281 AGCCCACTTGAAAAACACGG 59.256 50.000 0.00 0.00 0.00 4.94
265 268 3.739830 GCCCACTTGAAAAACACGGAAAT 60.740 43.478 0.00 0.00 0.00 2.17
266 269 4.500035 GCCCACTTGAAAAACACGGAAATA 60.500 41.667 0.00 0.00 0.00 1.40
268 271 5.221165 CCCACTTGAAAAACACGGAAATACT 60.221 40.000 0.00 0.00 0.00 2.12
269 272 6.270064 CCACTTGAAAAACACGGAAATACTT 58.730 36.000 0.00 0.00 0.00 2.24
270 273 6.198216 CCACTTGAAAAACACGGAAATACTTG 59.802 38.462 0.00 0.00 0.00 3.16
271 274 6.750039 CACTTGAAAAACACGGAAATACTTGT 59.250 34.615 0.00 0.00 0.00 3.16
272 275 6.970613 ACTTGAAAAACACGGAAATACTTGTC 59.029 34.615 0.00 0.00 0.00 3.18
274 277 7.033530 TGAAAAACACGGAAATACTTGTCAT 57.966 32.000 0.00 0.00 0.00 3.06
275 278 7.136119 TGAAAAACACGGAAATACTTGTCATC 58.864 34.615 0.00 0.00 0.00 2.92
276 279 6.627395 AAAACACGGAAATACTTGTCATCA 57.373 33.333 0.00 0.00 0.00 3.07
278 281 6.627395 AACACGGAAATACTTGTCATCAAA 57.373 33.333 0.00 0.00 32.87 2.69
280 283 7.214467 ACACGGAAATACTTGTCATCAAAAT 57.786 32.000 0.00 0.00 32.87 1.82
282 285 6.527722 CACGGAAATACTTGTCATCAAAATGG 59.472 38.462 0.00 0.00 33.42 3.16
283 286 6.432783 ACGGAAATACTTGTCATCAAAATGGA 59.567 34.615 0.00 0.00 33.42 3.41
284 287 7.122650 ACGGAAATACTTGTCATCAAAATGGAT 59.877 33.333 0.00 0.00 33.42 3.41
285 288 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
292 295 9.865321 ACTTGTCATCAAAATGGATAAAAGATG 57.135 29.630 0.00 0.00 33.42 2.90
360 363 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
361 364 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
362 365 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
363 366 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
364 367 4.811908 TGATGACAAGTATTTTCGGACGA 58.188 39.130 0.00 0.00 0.00 4.20
365 368 5.231702 TGATGACAAGTATTTTCGGACGAA 58.768 37.500 2.62 2.62 0.00 3.85
366 369 5.347635 TGATGACAAGTATTTTCGGACGAAG 59.652 40.000 7.25 0.00 35.38 3.79
367 370 3.991773 TGACAAGTATTTTCGGACGAAGG 59.008 43.478 7.25 0.00 35.38 3.46
368 371 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
369 372 3.007182 ACAAGTATTTTCGGACGAAGGGA 59.993 43.478 7.25 0.00 35.38 4.20
370 373 3.967332 AGTATTTTCGGACGAAGGGAA 57.033 42.857 7.25 0.29 35.38 3.97
371 374 4.482952 AGTATTTTCGGACGAAGGGAAT 57.517 40.909 7.25 7.49 35.38 3.01
372 375 5.603170 AGTATTTTCGGACGAAGGGAATA 57.397 39.130 7.25 6.61 35.38 1.75
373 376 5.354767 AGTATTTTCGGACGAAGGGAATAC 58.645 41.667 21.25 21.25 36.54 1.89
374 377 3.681593 TTTTCGGACGAAGGGAATACA 57.318 42.857 7.25 0.00 35.38 2.29
381 384 6.350906 TCGGACGAAGGGAATACAAAATTAT 58.649 36.000 0.00 0.00 0.00 1.28
448 459 4.744316 GTCCAAGACGACGTGGTT 57.256 55.556 17.74 0.00 44.03 3.67
450 461 0.249155 GTCCAAGACGACGTGGTTGA 60.249 55.000 17.74 0.00 44.03 3.18
454 465 1.931172 CAAGACGACGTGGTTGAAACT 59.069 47.619 4.58 0.00 0.00 2.66
475 489 0.034896 GAGGAGACCAAAAGCCGACA 59.965 55.000 0.00 0.00 0.00 4.35
522 536 1.589716 GCTCAAAGGAAGTGCCGCAT 61.590 55.000 0.00 0.00 43.43 4.73
523 537 0.883833 CTCAAAGGAAGTGCCGCATT 59.116 50.000 0.00 0.00 43.43 3.56
524 538 0.881118 TCAAAGGAAGTGCCGCATTC 59.119 50.000 0.00 1.89 43.43 2.67
525 539 0.109132 CAAAGGAAGTGCCGCATTCC 60.109 55.000 19.13 19.13 44.49 3.01
526 540 1.250840 AAAGGAAGTGCCGCATTCCC 61.251 55.000 21.38 6.94 45.13 3.97
527 541 2.044946 GGAAGTGCCGCATTCCCT 60.045 61.111 17.29 0.50 39.29 4.20
528 542 1.678970 GGAAGTGCCGCATTCCCTT 60.679 57.895 17.29 8.06 39.29 3.95
529 543 1.508088 GAAGTGCCGCATTCCCTTG 59.492 57.895 0.00 0.00 0.00 3.61
530 544 1.228552 AAGTGCCGCATTCCCTTGT 60.229 52.632 0.00 0.00 0.00 3.16
531 545 1.244019 AAGTGCCGCATTCCCTTGTC 61.244 55.000 0.00 0.00 0.00 3.18
532 546 1.971167 GTGCCGCATTCCCTTGTCA 60.971 57.895 0.00 0.00 0.00 3.58
533 547 1.228398 TGCCGCATTCCCTTGTCAA 60.228 52.632 0.00 0.00 0.00 3.18
534 548 0.611618 TGCCGCATTCCCTTGTCAAT 60.612 50.000 0.00 0.00 0.00 2.57
535 549 1.340502 TGCCGCATTCCCTTGTCAATA 60.341 47.619 0.00 0.00 0.00 1.90
536 550 1.956477 GCCGCATTCCCTTGTCAATAT 59.044 47.619 0.00 0.00 0.00 1.28
537 551 2.362077 GCCGCATTCCCTTGTCAATATT 59.638 45.455 0.00 0.00 0.00 1.28
538 552 3.550842 GCCGCATTCCCTTGTCAATATTC 60.551 47.826 0.00 0.00 0.00 1.75
539 553 3.885297 CCGCATTCCCTTGTCAATATTCT 59.115 43.478 0.00 0.00 0.00 2.40
540 554 4.339247 CCGCATTCCCTTGTCAATATTCTT 59.661 41.667 0.00 0.00 0.00 2.52
541 555 5.163519 CCGCATTCCCTTGTCAATATTCTTT 60.164 40.000 0.00 0.00 0.00 2.52
542 556 6.332630 CGCATTCCCTTGTCAATATTCTTTT 58.667 36.000 0.00 0.00 0.00 2.27
543 557 6.813152 CGCATTCCCTTGTCAATATTCTTTTT 59.187 34.615 0.00 0.00 0.00 1.94
595 609 2.524569 AAAAATGACGCCCACCAAAG 57.475 45.000 0.00 0.00 0.00 2.77
598 612 1.698506 AATGACGCCCACCAAAGAAA 58.301 45.000 0.00 0.00 0.00 2.52
599 613 1.698506 ATGACGCCCACCAAAGAAAA 58.301 45.000 0.00 0.00 0.00 2.29
600 614 1.698506 TGACGCCCACCAAAGAAAAT 58.301 45.000 0.00 0.00 0.00 1.82
617 631 9.346725 CAAAGAAAATTACAGCAATACTTCCTC 57.653 33.333 0.00 0.00 0.00 3.71
619 633 9.959721 AAGAAAATTACAGCAATACTTCCTCTA 57.040 29.630 0.00 0.00 0.00 2.43
677 691 8.448615 AGATCACTAAAATAGTAAACCAAACGC 58.551 33.333 0.00 0.00 37.23 4.84
784 810 0.681887 TCGCTTACCGGATCCAGACA 60.682 55.000 9.46 0.00 37.59 3.41
823 849 1.227823 CAATCGCGGCCCCATTCTA 60.228 57.895 6.13 0.00 0.00 2.10
1255 1285 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1256 1286 1.230819 AGGAGGAGGAGGAGGAGGT 60.231 63.158 0.00 0.00 0.00 3.85
1257 1287 1.075600 GGAGGAGGAGGAGGAGGTG 60.076 68.421 0.00 0.00 0.00 4.00
1375 1405 6.378697 CCGACCAGGTCCTTGAAAAGATCT 62.379 50.000 14.46 0.00 40.23 2.75
1559 1589 7.445707 AGGTGATCTTTACTTTTTCTGTCCTTC 59.554 37.037 0.00 0.00 0.00 3.46
1652 1682 3.842007 TTTTTCGAGGGTACTTGTGGA 57.158 42.857 0.00 0.00 0.00 4.02
1653 1683 3.842007 TTTTCGAGGGTACTTGTGGAA 57.158 42.857 0.00 0.00 0.00 3.53
1654 1684 3.396260 TTTCGAGGGTACTTGTGGAAG 57.604 47.619 0.00 0.00 35.07 3.46
1655 1685 0.606604 TCGAGGGTACTTGTGGAAGC 59.393 55.000 0.00 0.00 31.68 3.86
1656 1686 0.320374 CGAGGGTACTTGTGGAAGCA 59.680 55.000 0.00 0.00 31.68 3.91
1657 1687 1.673033 CGAGGGTACTTGTGGAAGCAG 60.673 57.143 0.00 0.00 31.68 4.24
1658 1688 0.036875 AGGGTACTTGTGGAAGCAGC 59.963 55.000 0.00 0.00 31.68 5.25
1659 1689 0.036875 GGGTACTTGTGGAAGCAGCT 59.963 55.000 0.00 0.00 31.68 4.24
1660 1690 1.545651 GGGTACTTGTGGAAGCAGCTT 60.546 52.381 7.60 7.60 31.68 3.74
1661 1691 1.537202 GGTACTTGTGGAAGCAGCTTG 59.463 52.381 13.91 0.00 31.68 4.01
1662 1692 2.494059 GTACTTGTGGAAGCAGCTTGA 58.506 47.619 13.91 0.00 31.68 3.02
1663 1693 1.312815 ACTTGTGGAAGCAGCTTGAC 58.687 50.000 13.91 9.58 31.68 3.18
1664 1694 0.595095 CTTGTGGAAGCAGCTTGACC 59.405 55.000 13.91 9.27 0.00 4.02
1665 1695 0.106769 TTGTGGAAGCAGCTTGACCA 60.107 50.000 13.91 12.10 0.00 4.02
1666 1696 1.952263 GTGGAAGCAGCTTGACCAC 59.048 57.895 23.51 23.51 42.83 4.16
1667 1697 0.536006 GTGGAAGCAGCTTGACCACT 60.536 55.000 27.67 0.00 44.91 4.00
1668 1698 1.055849 TGGAAGCAGCTTGACCACTA 58.944 50.000 13.91 0.00 0.00 2.74
1669 1699 1.630369 TGGAAGCAGCTTGACCACTAT 59.370 47.619 13.91 0.00 0.00 2.12
1670 1700 2.284190 GGAAGCAGCTTGACCACTATC 58.716 52.381 13.91 0.00 0.00 2.08
1671 1701 2.355108 GGAAGCAGCTTGACCACTATCA 60.355 50.000 13.91 0.00 0.00 2.15
1686 1731 3.532102 ACTATCAGGAGTGAAACCCCTT 58.468 45.455 0.00 0.00 37.80 3.95
1820 1865 6.884295 ACAACAAGCCAGAGTATATTGCTAAA 59.116 34.615 0.00 0.00 0.00 1.85
1896 1941 2.101125 GTGTATTTTGTGCTATGCGCG 58.899 47.619 0.00 0.00 42.51 6.86
1951 1996 2.031163 GTGCGGCTCCACAACTCT 59.969 61.111 0.00 0.00 35.80 3.24
1954 1999 2.743718 CGGCTCCACAACTCTGGT 59.256 61.111 0.00 0.00 32.50 4.00
1969 2014 0.250727 CTGGTGGTGACGGTGGAAAT 60.251 55.000 0.00 0.00 0.00 2.17
2008 2053 0.861837 CGTGCTCAGTTCCACAGTTC 59.138 55.000 0.00 0.00 32.37 3.01
2010 2055 2.288213 CGTGCTCAGTTCCACAGTTCTA 60.288 50.000 0.00 0.00 32.37 2.10
2013 2058 3.324846 TGCTCAGTTCCACAGTTCTATGT 59.675 43.478 0.00 0.00 0.00 2.29
2240 2285 5.472137 ACTTTAGCTTTTCTGTAATGCGGAA 59.528 36.000 0.00 0.00 40.72 4.30
2252 2297 2.044123 ATGCGGAAACAGATCCTTCC 57.956 50.000 8.23 8.23 37.34 3.46
2360 2408 5.246883 GGTAACCACACTTTCCTAGGTCTTA 59.753 44.000 9.08 0.00 0.00 2.10
2372 2420 5.024118 TCCTAGGTCTTAGAAAGGGTGAAG 58.976 45.833 9.08 0.00 0.00 3.02
2378 2426 6.044404 AGGTCTTAGAAAGGGTGAAGAAATGA 59.956 38.462 0.00 0.00 30.07 2.57
2381 2429 4.379302 AGAAAGGGTGAAGAAATGAGCT 57.621 40.909 0.00 0.00 0.00 4.09
2387 2435 6.567602 AGGGTGAAGAAATGAGCTAACTAT 57.432 37.500 0.00 0.00 0.00 2.12
2388 2436 7.676683 AGGGTGAAGAAATGAGCTAACTATA 57.323 36.000 0.00 0.00 0.00 1.31
2429 2477 9.258826 TCATTTGATTGACATGTTTTGGTTTAG 57.741 29.630 0.00 0.00 0.00 1.85
2436 2484 4.881920 ACATGTTTTGGTTTAGCATGTCC 58.118 39.130 0.00 0.00 44.41 4.02
2610 2659 3.067601 ACTTCGTTTCATTGTTTGGACCC 59.932 43.478 0.00 0.00 0.00 4.46
2620 2669 1.273324 TGTTTGGACCCAAGGTGGTTT 60.273 47.619 1.42 0.00 39.24 3.27
2621 2670 1.138069 GTTTGGACCCAAGGTGGTTTG 59.862 52.381 1.42 0.00 39.24 2.93
2622 2671 0.631753 TTGGACCCAAGGTGGTTTGA 59.368 50.000 0.00 0.00 39.24 2.69
2623 2672 0.184933 TGGACCCAAGGTGGTTTGAG 59.815 55.000 0.00 0.00 39.24 3.02
2624 2673 0.185175 GGACCCAAGGTGGTTTGAGT 59.815 55.000 0.00 0.00 39.24 3.41
2625 2674 1.411074 GGACCCAAGGTGGTTTGAGTT 60.411 52.381 0.00 0.00 39.24 3.01
2674 2723 1.228583 AGTCGACACTGGAGAGGCA 60.229 57.895 19.50 0.00 0.00 4.75
2730 2779 6.780457 AGCAGAACAATGGCAATAACTATT 57.220 33.333 0.00 0.00 0.00 1.73
2821 2870 2.913777 TCATCGTTGTACAGAGGTCG 57.086 50.000 0.00 0.00 0.00 4.79
2843 2892 4.562394 CGTGCACTTGTTTTTGTTCAGAAT 59.438 37.500 16.19 0.00 0.00 2.40
2864 2913 7.227116 CAGAATAGTAGTAGTAGCGGAAGAAGT 59.773 40.741 0.00 0.00 0.00 3.01
2866 2915 5.816449 AGTAGTAGTAGCGGAAGAAGTTC 57.184 43.478 0.00 0.00 0.00 3.01
2867 2916 5.499313 AGTAGTAGTAGCGGAAGAAGTTCT 58.501 41.667 0.00 0.00 32.72 3.01
2868 2917 4.968812 AGTAGTAGCGGAAGAAGTTCTC 57.031 45.455 5.70 0.01 32.72 2.87
2870 2919 1.826096 AGTAGCGGAAGAAGTTCTCCC 59.174 52.381 5.70 0.99 32.72 4.30
2871 2920 0.815734 TAGCGGAAGAAGTTCTCCCG 59.184 55.000 24.82 24.82 42.74 5.14
2873 2922 0.736672 GCGGAAGAAGTTCTCCCGTC 60.737 60.000 28.37 18.14 41.95 4.79
2874 2923 0.601558 CGGAAGAAGTTCTCCCGTCA 59.398 55.000 21.39 0.00 35.83 4.35
2875 2924 1.402984 CGGAAGAAGTTCTCCCGTCAG 60.403 57.143 21.39 5.35 35.83 3.51
2894 2948 1.645402 GCCCCTAATCTCAAGGCCCA 61.645 60.000 0.00 0.00 37.66 5.36
2895 2949 0.475906 CCCCTAATCTCAAGGCCCAG 59.524 60.000 0.00 0.00 32.34 4.45
2896 2950 0.179006 CCCTAATCTCAAGGCCCAGC 60.179 60.000 0.00 0.00 32.34 4.85
2915 2969 0.827089 CCCAGCCCAACACATGTTCA 60.827 55.000 0.00 0.00 35.83 3.18
2921 2975 1.264020 CCCAACACATGTTCACACGAG 59.736 52.381 0.00 0.00 35.83 4.18
2922 2976 1.264020 CCAACACATGTTCACACGAGG 59.736 52.381 0.00 0.00 35.83 4.63
3005 3059 7.044181 TGAAGATGTTGCCATTTGTTAAAACA 58.956 30.769 0.00 0.00 37.08 2.83
3038 3092 4.280174 AGCTGCACCATCCATTAATCATTC 59.720 41.667 1.02 0.00 0.00 2.67
3058 3112 5.818136 TTCACCTTATCATGCAAAGTAGC 57.182 39.130 0.00 0.00 0.00 3.58
3100 3155 5.195001 TGACTTTTAGTGAACCAAATGGC 57.805 39.130 0.00 0.00 39.32 4.40
3104 3159 5.304101 ACTTTTAGTGAACCAAATGGCATGA 59.696 36.000 0.00 0.00 39.32 3.07
3109 3164 3.446873 GTGAACCAAATGGCATGATACCA 59.553 43.478 0.00 0.00 42.61 3.25
3116 3171 5.756347 CCAAATGGCATGATACCAATGAAAG 59.244 40.000 0.00 0.00 41.49 2.62
3123 3178 6.058183 GCATGATACCAATGAAAGTAGAGGT 58.942 40.000 0.00 0.00 0.00 3.85
3136 3191 7.798071 TGAAAGTAGAGGTTTTTCTCCAGTTA 58.202 34.615 0.00 0.00 34.46 2.24
3221 3276 4.462483 ACACCCAGTTTGATATTCGCAAAT 59.538 37.500 0.00 0.00 37.54 2.32
3416 3497 9.351570 GAAATCAATTTCCTTCTCATTGTCTTC 57.648 33.333 4.44 0.00 40.10 2.87
3417 3498 8.413309 AATCAATTTCCTTCTCATTGTCTTCA 57.587 30.769 0.00 0.00 31.08 3.02
3418 3499 7.822161 TCAATTTCCTTCTCATTGTCTTCAA 57.178 32.000 0.00 0.00 37.98 2.69
3419 3500 7.879070 TCAATTTCCTTCTCATTGTCTTCAAG 58.121 34.615 0.00 0.00 36.97 3.02
3420 3501 7.503566 TCAATTTCCTTCTCATTGTCTTCAAGT 59.496 33.333 0.00 0.00 36.97 3.16
3421 3502 8.786898 CAATTTCCTTCTCATTGTCTTCAAGTA 58.213 33.333 0.00 0.00 36.97 2.24
3422 3503 9.525826 AATTTCCTTCTCATTGTCTTCAAGTAT 57.474 29.630 0.00 0.00 36.97 2.12
3424 3505 9.658799 TTTCCTTCTCATTGTCTTCAAGTATAG 57.341 33.333 0.00 0.00 36.97 1.31
3425 3506 8.367660 TCCTTCTCATTGTCTTCAAGTATAGT 57.632 34.615 0.00 0.00 36.97 2.12
3426 3507 8.253810 TCCTTCTCATTGTCTTCAAGTATAGTG 58.746 37.037 0.00 0.00 36.97 2.74
3427 3508 7.493971 CCTTCTCATTGTCTTCAAGTATAGTGG 59.506 40.741 0.00 0.00 36.97 4.00
3428 3509 6.341316 TCTCATTGTCTTCAAGTATAGTGGC 58.659 40.000 0.00 0.00 36.97 5.01
3429 3510 6.048732 TCATTGTCTTCAAGTATAGTGGCA 57.951 37.500 0.00 0.00 36.97 4.92
3430 3511 5.874810 TCATTGTCTTCAAGTATAGTGGCAC 59.125 40.000 10.29 10.29 36.97 5.01
3431 3512 4.202245 TGTCTTCAAGTATAGTGGCACC 57.798 45.455 15.27 0.00 0.00 5.01
3454 3535 3.653164 AGTTTTTGACATGTTCCCCCTT 58.347 40.909 0.00 0.00 0.00 3.95
3602 3683 2.970639 CGACATCGGTGACCTGGT 59.029 61.111 0.65 0.00 35.37 4.00
3623 3704 3.853671 GTGAACATGCAAATTCTTAGCCG 59.146 43.478 12.88 0.00 0.00 5.52
3650 3731 8.288913 CGGCAAGGTTCAAAATGAAAAATAAAT 58.711 29.630 0.00 0.00 38.22 1.40
3739 3820 1.211703 TCCAGCACAACCAAGTCAAGA 59.788 47.619 0.00 0.00 0.00 3.02
3741 3822 3.072330 TCCAGCACAACCAAGTCAAGATA 59.928 43.478 0.00 0.00 0.00 1.98
3742 3823 4.012374 CCAGCACAACCAAGTCAAGATAT 58.988 43.478 0.00 0.00 0.00 1.63
3743 3824 5.045942 TCCAGCACAACCAAGTCAAGATATA 60.046 40.000 0.00 0.00 0.00 0.86
3841 3925 5.187186 GGTCTCTTGAATGTACCTGGAAGTA 59.813 44.000 0.00 0.00 0.00 2.24
3866 3950 6.761731 TTAATTGAGAATTTGCGTTTGTGG 57.238 33.333 0.00 0.00 32.38 4.17
3915 3999 0.679505 GCGTACTGCCATCCCTGATA 59.320 55.000 0.00 0.00 37.76 2.15
3918 4002 3.807209 GCGTACTGCCATCCCTGATATTT 60.807 47.826 0.00 0.00 37.76 1.40
3922 4006 5.387113 ACTGCCATCCCTGATATTTGTTA 57.613 39.130 0.00 0.00 0.00 2.41
3923 4007 5.380043 ACTGCCATCCCTGATATTTGTTAG 58.620 41.667 0.00 0.00 0.00 2.34
3924 4008 5.132648 ACTGCCATCCCTGATATTTGTTAGA 59.867 40.000 0.00 0.00 0.00 2.10
3925 4009 5.624159 TGCCATCCCTGATATTTGTTAGAG 58.376 41.667 0.00 0.00 0.00 2.43
3949 4033 9.968743 GAGATACTATGTTTTACGGTCTTTTTG 57.031 33.333 0.00 0.00 0.00 2.44
3950 4034 9.715121 AGATACTATGTTTTACGGTCTTTTTGA 57.285 29.630 0.00 0.00 0.00 2.69
3951 4035 9.968743 GATACTATGTTTTACGGTCTTTTTGAG 57.031 33.333 0.00 0.00 0.00 3.02
3955 4039 5.187687 TGTTTTACGGTCTTTTTGAGGAGT 58.812 37.500 0.00 0.00 0.00 3.85
3956 4040 5.648960 TGTTTTACGGTCTTTTTGAGGAGTT 59.351 36.000 0.00 0.00 0.00 3.01
3986 4070 0.323629 TTAGAGCAACTCCAACGGGG 59.676 55.000 0.00 0.00 38.37 5.73
3990 4074 3.047877 CAACTCCAACGGGGCGAC 61.048 66.667 0.00 0.00 36.21 5.19
4016 4100 1.298157 CGGATGGCGCTTTTGTCTGA 61.298 55.000 7.64 0.00 0.00 3.27
4053 4148 3.562397 GGCCATCCGTCCTGTTTTA 57.438 52.632 0.00 0.00 0.00 1.52
4054 4149 1.379527 GGCCATCCGTCCTGTTTTAG 58.620 55.000 0.00 0.00 0.00 1.85
4061 4156 4.627284 TCCGTCCTGTTTTAGATTTGGA 57.373 40.909 0.00 0.00 0.00 3.53
4063 4158 5.566469 TCCGTCCTGTTTTAGATTTGGATT 58.434 37.500 0.00 0.00 0.00 3.01
4064 4159 6.007703 TCCGTCCTGTTTTAGATTTGGATTT 58.992 36.000 0.00 0.00 0.00 2.17
4066 4161 6.294508 CCGTCCTGTTTTAGATTTGGATTTGT 60.295 38.462 0.00 0.00 0.00 2.83
4087 4191 1.092921 GTGCGCCGACCCATTTCATA 61.093 55.000 4.18 0.00 0.00 2.15
4089 4193 0.951558 GCGCCGACCCATTTCATATT 59.048 50.000 0.00 0.00 0.00 1.28
4094 4198 2.032030 CCGACCCATTTCATATTCGCAC 60.032 50.000 0.00 0.00 0.00 5.34
4095 4199 2.611751 CGACCCATTTCATATTCGCACA 59.388 45.455 0.00 0.00 0.00 4.57
4102 4206 6.237888 CCCATTTCATATTCGCACACAATTTG 60.238 38.462 0.00 0.00 0.00 2.32
4132 4240 2.550423 GCTCACTGCCATAGATCATGCT 60.550 50.000 0.00 0.00 32.84 3.79
4142 4250 1.269958 AGATCATGCTAGCGGCCATA 58.730 50.000 10.77 0.00 40.92 2.74
4145 4253 0.108662 TCATGCTAGCGGCCATATCG 60.109 55.000 10.77 0.00 40.92 2.92
4147 4255 0.321671 ATGCTAGCGGCCATATCGTT 59.678 50.000 10.77 0.00 40.92 3.85
4148 4256 0.599991 TGCTAGCGGCCATATCGTTG 60.600 55.000 10.77 0.00 40.92 4.10
4149 4257 1.901650 GCTAGCGGCCATATCGTTGC 61.902 60.000 2.24 0.00 34.27 4.17
4150 4258 1.291877 CTAGCGGCCATATCGTTGCC 61.292 60.000 2.24 0.00 41.85 4.52
4151 4259 2.725203 TAGCGGCCATATCGTTGCCC 62.725 60.000 2.24 0.00 42.29 5.36
4152 4260 3.345808 CGGCCATATCGTTGCCCG 61.346 66.667 2.24 0.00 42.29 6.13
4166 4274 3.061848 CCCGAAGCAAATGCCGGT 61.062 61.111 17.70 0.00 41.95 5.28
4178 4286 2.060567 ATGCCGGTATCATGCCAGCT 62.061 55.000 1.90 0.00 31.07 4.24
4179 4287 1.526917 GCCGGTATCATGCCAGCTT 60.527 57.895 1.90 0.00 0.00 3.74
4181 4289 0.179048 CCGGTATCATGCCAGCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
4182 4290 1.667236 CGGTATCATGCCAGCTTCAA 58.333 50.000 0.00 0.00 0.00 2.69
4183 4291 2.016318 CGGTATCATGCCAGCTTCAAA 58.984 47.619 0.00 0.00 0.00 2.69
4187 4295 5.221028 CGGTATCATGCCAGCTTCAAAATAA 60.221 40.000 0.00 0.00 0.00 1.40
4188 4296 5.979517 GGTATCATGCCAGCTTCAAAATAAC 59.020 40.000 0.00 0.00 0.00 1.89
4190 4298 4.808558 TCATGCCAGCTTCAAAATAACAC 58.191 39.130 0.00 0.00 0.00 3.32
4191 4299 3.658757 TGCCAGCTTCAAAATAACACC 57.341 42.857 0.00 0.00 0.00 4.16
4192 4300 2.961741 TGCCAGCTTCAAAATAACACCA 59.038 40.909 0.00 0.00 0.00 4.17
4204 4331 6.096141 TCAAAATAACACCACACAGTTCATGT 59.904 34.615 0.00 0.00 45.43 3.21
4249 4377 3.676172 CACATATGCCAGCACACAAAAAG 59.324 43.478 1.58 0.00 0.00 2.27
4250 4378 3.255725 CATATGCCAGCACACAAAAAGG 58.744 45.455 0.00 0.00 0.00 3.11
4276 4405 1.606350 GACTTGAGTTCGACCACGCG 61.606 60.000 3.53 3.53 39.58 6.01
4277 4406 3.000080 CTTGAGTTCGACCACGCGC 62.000 63.158 5.73 0.00 39.58 6.86
4301 4435 1.817520 CGTGGTCATGCCGGCATAA 60.818 57.895 39.94 26.73 41.21 1.90
4342 4487 1.092348 CCATAGGTCACTCGTCGTCA 58.908 55.000 0.00 0.00 0.00 4.35
4398 4543 0.329596 GGCCTCTTCCTTGGTGACAT 59.670 55.000 0.00 0.00 42.32 3.06
4443 4589 1.077501 CACCCCGGTCATCATGCTT 60.078 57.895 0.00 0.00 0.00 3.91
4475 4621 0.472471 TCTTTCGCCTTGGTCTTGGT 59.528 50.000 0.00 0.00 0.00 3.67
4478 4624 0.817634 TTCGCCTTGGTCTTGGTGTG 60.818 55.000 0.00 0.00 35.52 3.82
4496 4642 2.646143 GGCGGCCTCGATCTCTAC 59.354 66.667 12.87 0.00 39.00 2.59
4504 4650 2.609244 GCCTCGATCTCTACCATCTTGC 60.609 54.545 0.00 0.00 0.00 4.01
4521 4667 2.124942 CCTTGCTTCTCCGCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
4523 4669 1.222936 CTTGCTTCTCCGCCTCCAT 59.777 57.895 0.00 0.00 0.00 3.41
4527 4673 1.680522 GCTTCTCCGCCTCCATCTCA 61.681 60.000 0.00 0.00 0.00 3.27
4529 4675 0.826715 TTCTCCGCCTCCATCTCAAG 59.173 55.000 0.00 0.00 0.00 3.02
4548 4694 0.455005 GCATCTTGGCTTGCTTCTCC 59.545 55.000 0.00 0.00 35.95 3.71
4551 4697 2.672996 TTGGCTTGCTTCTCCGCC 60.673 61.111 0.00 0.00 42.78 6.13
4556 4702 1.222936 CTTGCTTCTCCGCCTCCAT 59.777 57.895 0.00 0.00 0.00 3.41
4587 4733 3.457380 TCCTCCTTTGGATCTCCATGAAG 59.543 47.826 0.00 2.05 46.97 3.02
4592 4738 0.911769 TGGATCTCCATGAAGGCGTT 59.088 50.000 0.00 0.00 42.01 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.699522 GGTCCAGGTGCCGGTGTC 62.700 72.222 1.90 0.00 0.00 3.67
39 40 4.436998 CGTCGAGGTCCAGGTGCC 62.437 72.222 0.00 0.00 0.00 5.01
108 110 1.457380 TTGTCTCCTCCCCTACCCCA 61.457 60.000 0.00 0.00 0.00 4.96
125 127 1.275657 GCGGACACACACGTTCTTG 59.724 57.895 0.00 0.00 0.00 3.02
137 139 3.058085 TGTTAATATAGATCGCGCGGACA 60.058 43.478 31.69 11.79 0.00 4.02
142 144 7.278211 TCATCTTTGTTAATATAGATCGCGC 57.722 36.000 0.00 0.00 0.00 6.86
163 165 6.243900 AGAAGACTGATTCAACCACATTCAT 58.756 36.000 0.00 0.00 0.00 2.57
166 168 6.773638 AGTAGAAGACTGATTCAACCACATT 58.226 36.000 0.00 0.00 36.87 2.71
172 174 5.096849 GGTCGAGTAGAAGACTGATTCAAC 58.903 45.833 0.00 0.00 39.06 3.18
180 182 0.394080 CCCCGGTCGAGTAGAAGACT 60.394 60.000 0.00 0.00 42.90 3.24
192 194 1.208776 AGCTGTTTATGTACCCCGGTC 59.791 52.381 0.00 0.00 0.00 4.79
193 195 1.282382 AGCTGTTTATGTACCCCGGT 58.718 50.000 0.00 0.00 0.00 5.28
194 196 2.413310 AAGCTGTTTATGTACCCCGG 57.587 50.000 0.00 0.00 0.00 5.73
200 202 5.126384 GGCCCATAACAAAGCTGTTTATGTA 59.874 40.000 15.74 0.00 43.45 2.29
209 211 2.311841 ACCTAAGGCCCATAACAAAGCT 59.688 45.455 0.00 0.00 0.00 3.74
219 221 1.998530 CATGGACACCTAAGGCCCA 59.001 57.895 0.00 0.00 0.00 5.36
227 230 1.001641 GGCTCTTGCATGGACACCT 60.002 57.895 0.00 0.00 41.91 4.00
246 249 6.750039 ACAAGTATTTCCGTGTTTTTCAAGTG 59.250 34.615 0.00 0.00 0.00 3.16
258 261 6.432783 TCCATTTTGATGACAAGTATTTCCGT 59.567 34.615 0.00 0.00 37.32 4.69
259 262 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
266 269 9.865321 CATCTTTTATCCATTTTGATGACAAGT 57.135 29.630 0.00 0.00 37.32 3.16
334 337 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
335 338 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
336 339 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
337 340 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
338 341 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
339 342 6.203145 TCGTCCGAAAATACTTGTCATCAAAA 59.797 34.615 0.00 0.00 32.87 2.44
340 343 5.697178 TCGTCCGAAAATACTTGTCATCAAA 59.303 36.000 0.00 0.00 32.87 2.69
341 344 5.231702 TCGTCCGAAAATACTTGTCATCAA 58.768 37.500 0.00 0.00 0.00 2.57
342 345 4.811908 TCGTCCGAAAATACTTGTCATCA 58.188 39.130 0.00 0.00 0.00 3.07
343 346 5.220416 CCTTCGTCCGAAAATACTTGTCATC 60.220 44.000 3.52 0.00 33.34 2.92
344 347 4.630069 CCTTCGTCCGAAAATACTTGTCAT 59.370 41.667 3.52 0.00 33.34 3.06
345 348 3.991773 CCTTCGTCCGAAAATACTTGTCA 59.008 43.478 3.52 0.00 33.34 3.58
346 349 3.370061 CCCTTCGTCCGAAAATACTTGTC 59.630 47.826 3.52 0.00 33.34 3.18
347 350 3.007182 TCCCTTCGTCCGAAAATACTTGT 59.993 43.478 3.52 0.00 33.34 3.16
348 351 3.592059 TCCCTTCGTCCGAAAATACTTG 58.408 45.455 3.52 0.00 33.34 3.16
349 352 3.967332 TCCCTTCGTCCGAAAATACTT 57.033 42.857 3.52 0.00 33.34 2.24
350 353 3.967332 TTCCCTTCGTCCGAAAATACT 57.033 42.857 3.52 0.00 33.34 2.12
351 354 5.111293 TGTATTCCCTTCGTCCGAAAATAC 58.889 41.667 19.05 19.05 36.67 1.89
352 355 5.341872 TGTATTCCCTTCGTCCGAAAATA 57.658 39.130 3.52 2.95 33.34 1.40
353 356 4.210724 TGTATTCCCTTCGTCCGAAAAT 57.789 40.909 3.52 3.82 33.34 1.82
354 357 3.681593 TGTATTCCCTTCGTCCGAAAA 57.318 42.857 3.52 0.00 33.34 2.29
355 358 3.681593 TTGTATTCCCTTCGTCCGAAA 57.318 42.857 3.52 0.00 33.34 3.46
356 359 3.681593 TTTGTATTCCCTTCGTCCGAA 57.318 42.857 1.81 1.81 0.00 4.30
357 360 3.681593 TTTTGTATTCCCTTCGTCCGA 57.318 42.857 0.00 0.00 0.00 4.55
358 361 4.957759 AATTTTGTATTCCCTTCGTCCG 57.042 40.909 0.00 0.00 0.00 4.79
359 362 7.562454 TCATAATTTTGTATTCCCTTCGTCC 57.438 36.000 0.00 0.00 0.00 4.79
360 363 8.836413 TCATCATAATTTTGTATTCCCTTCGTC 58.164 33.333 0.00 0.00 0.00 4.20
361 364 8.746052 TCATCATAATTTTGTATTCCCTTCGT 57.254 30.769 0.00 0.00 0.00 3.85
415 418 7.460751 GTCTTGGACGAGGTGTAAATTATAC 57.539 40.000 0.00 0.00 0.00 1.47
433 444 1.004292 GTTTCAACCACGTCGTCTTGG 60.004 52.381 3.69 3.69 38.69 3.61
443 454 2.495084 GTCTCCTCCAGTTTCAACCAC 58.505 52.381 0.00 0.00 0.00 4.16
448 459 3.820557 CTTTTGGTCTCCTCCAGTTTCA 58.179 45.455 0.00 0.00 38.80 2.69
450 461 2.587522 GCTTTTGGTCTCCTCCAGTTT 58.412 47.619 0.00 0.00 38.80 2.66
454 465 1.125093 TCGGCTTTTGGTCTCCTCCA 61.125 55.000 0.00 0.00 35.49 3.86
475 489 3.093057 ACCTCTAGTTCGACTTGAGCAT 58.907 45.455 15.49 7.64 43.52 3.79
488 502 2.310779 TGAGCTGTTGGACCTCTAGT 57.689 50.000 0.00 0.00 0.00 2.57
509 523 2.044946 GGGAATGCGGCACTTCCT 60.045 61.111 27.59 5.84 40.67 3.36
542 556 0.747852 GACAAAGGACCCCGCAAAAA 59.252 50.000 0.00 0.00 0.00 1.94
543 557 0.395862 TGACAAAGGACCCCGCAAAA 60.396 50.000 0.00 0.00 0.00 2.44
544 558 0.395862 TTGACAAAGGACCCCGCAAA 60.396 50.000 0.00 0.00 0.00 3.68
545 559 0.178975 ATTGACAAAGGACCCCGCAA 60.179 50.000 0.00 0.00 0.00 4.85
546 560 0.693622 TATTGACAAAGGACCCCGCA 59.306 50.000 0.00 0.00 0.00 5.69
547 561 2.052782 ATATTGACAAAGGACCCCGC 57.947 50.000 0.00 0.00 0.00 6.13
548 562 3.886123 AGAATATTGACAAAGGACCCCG 58.114 45.455 0.00 0.00 0.00 5.73
549 563 5.261216 TCAAGAATATTGACAAAGGACCCC 58.739 41.667 0.00 0.00 0.00 4.95
550 564 6.659242 TCTTCAAGAATATTGACAAAGGACCC 59.341 38.462 0.00 0.00 0.00 4.46
551 565 7.687941 TCTTCAAGAATATTGACAAAGGACC 57.312 36.000 0.00 0.00 0.00 4.46
552 566 9.965824 TTTTCTTCAAGAATATTGACAAAGGAC 57.034 29.630 0.00 0.00 33.67 3.85
584 598 3.574614 CTGTAATTTTCTTTGGTGGGCG 58.425 45.455 0.00 0.00 0.00 6.13
590 604 8.466086 GGAAGTATTGCTGTAATTTTCTTTGG 57.534 34.615 0.00 0.00 31.69 3.28
693 719 5.416947 GCATATCGGTCGGGTAATTAGAAT 58.583 41.667 0.00 0.00 0.00 2.40
823 849 1.408822 GCGATTTGGATTGGAGGAGGT 60.409 52.381 0.00 0.00 0.00 3.85
928 955 0.877213 GCACCACCGAAACACTACGT 60.877 55.000 0.00 0.00 0.00 3.57
1122 1149 2.718993 CGTAGAGCCGCTCCACGATC 62.719 65.000 29.95 9.06 45.40 3.69
1238 1265 1.230819 ACCTCCTCCTCCTCCTCCT 60.231 63.158 0.00 0.00 0.00 3.69
1338 1368 1.486145 GGTCGGGGTCCTCCAAGAAA 61.486 60.000 0.00 0.00 37.22 2.52
1375 1405 2.322355 TTCCAAACCGGTAAACACGA 57.678 45.000 8.00 0.00 35.57 4.35
1379 1409 4.143052 CGTACTGATTCCAAACCGGTAAAC 60.143 45.833 8.00 0.00 35.57 2.01
1559 1589 7.043656 CGTAAGGCAGACAAAACTTTTAAAAGG 60.044 37.037 27.23 14.48 40.31 3.11
1632 1662 3.842007 TCCACAAGTACCCTCGAAAAA 57.158 42.857 0.00 0.00 0.00 1.94
1633 1663 3.735591 CTTCCACAAGTACCCTCGAAAA 58.264 45.455 0.00 0.00 0.00 2.29
1634 1664 2.549349 GCTTCCACAAGTACCCTCGAAA 60.549 50.000 0.00 0.00 31.45 3.46
1635 1665 1.001633 GCTTCCACAAGTACCCTCGAA 59.998 52.381 0.00 0.00 31.45 3.71
1636 1666 0.606604 GCTTCCACAAGTACCCTCGA 59.393 55.000 0.00 0.00 31.45 4.04
1637 1667 0.320374 TGCTTCCACAAGTACCCTCG 59.680 55.000 0.00 0.00 31.45 4.63
1638 1668 1.946283 GCTGCTTCCACAAGTACCCTC 60.946 57.143 0.00 0.00 31.45 4.30
1639 1669 0.036875 GCTGCTTCCACAAGTACCCT 59.963 55.000 0.00 0.00 31.45 4.34
1640 1670 0.036875 AGCTGCTTCCACAAGTACCC 59.963 55.000 0.00 0.00 31.45 3.69
1641 1671 1.537202 CAAGCTGCTTCCACAAGTACC 59.463 52.381 12.82 0.00 31.45 3.34
1642 1672 2.224314 GTCAAGCTGCTTCCACAAGTAC 59.776 50.000 12.82 0.00 31.45 2.73
1643 1673 2.494059 GTCAAGCTGCTTCCACAAGTA 58.506 47.619 12.82 0.00 31.45 2.24
1644 1674 1.312815 GTCAAGCTGCTTCCACAAGT 58.687 50.000 12.82 0.00 31.45 3.16
1645 1675 0.595095 GGTCAAGCTGCTTCCACAAG 59.405 55.000 12.82 0.02 0.00 3.16
1646 1676 0.106769 TGGTCAAGCTGCTTCCACAA 60.107 50.000 16.34 6.39 0.00 3.33
1647 1677 0.819259 GTGGTCAAGCTGCTTCCACA 60.819 55.000 32.12 20.50 45.22 4.17
1648 1678 0.536006 AGTGGTCAAGCTGCTTCCAC 60.536 55.000 30.96 30.96 45.94 4.02
1649 1679 1.055849 TAGTGGTCAAGCTGCTTCCA 58.944 50.000 16.34 16.34 0.00 3.53
1650 1680 2.284190 GATAGTGGTCAAGCTGCTTCC 58.716 52.381 12.82 12.33 0.00 3.46
1651 1681 2.935201 CTGATAGTGGTCAAGCTGCTTC 59.065 50.000 12.82 1.95 0.00 3.86
1652 1682 2.355513 CCTGATAGTGGTCAAGCTGCTT 60.356 50.000 9.53 9.53 0.00 3.91
1653 1683 1.209019 CCTGATAGTGGTCAAGCTGCT 59.791 52.381 0.00 0.00 0.00 4.24
1654 1684 1.208052 TCCTGATAGTGGTCAAGCTGC 59.792 52.381 0.00 0.00 0.00 5.25
1655 1685 2.499289 ACTCCTGATAGTGGTCAAGCTG 59.501 50.000 0.00 0.00 0.00 4.24
1656 1686 2.499289 CACTCCTGATAGTGGTCAAGCT 59.501 50.000 0.00 0.00 42.63 3.74
1657 1687 2.497675 TCACTCCTGATAGTGGTCAAGC 59.502 50.000 4.32 0.00 45.69 4.01
1658 1688 4.808414 TTCACTCCTGATAGTGGTCAAG 57.192 45.455 4.32 0.00 45.69 3.02
1659 1689 4.262894 GGTTTCACTCCTGATAGTGGTCAA 60.263 45.833 4.32 0.00 45.69 3.18
1660 1690 3.260884 GGTTTCACTCCTGATAGTGGTCA 59.739 47.826 4.32 0.00 45.69 4.02
1661 1691 3.369576 GGGTTTCACTCCTGATAGTGGTC 60.370 52.174 4.32 0.00 45.69 4.02
1662 1692 2.572104 GGGTTTCACTCCTGATAGTGGT 59.428 50.000 4.32 0.00 45.69 4.16
1663 1693 2.092914 GGGGTTTCACTCCTGATAGTGG 60.093 54.545 4.32 0.00 45.69 4.00
1664 1694 3.268023 GGGGTTTCACTCCTGATAGTG 57.732 52.381 0.00 0.00 46.78 2.74
1686 1731 1.102154 CCTGCACAACCAGAAACACA 58.898 50.000 0.00 0.00 34.77 3.72
1755 1800 1.174078 TCACTAACTGCCGGACGTCA 61.174 55.000 18.91 0.00 0.00 4.35
1820 1865 6.532826 ACCTTGGCATTTTTATGACACAAAT 58.467 32.000 0.00 0.00 39.69 2.32
1831 1876 3.006859 GGCACTTCTACCTTGGCATTTTT 59.993 43.478 0.00 0.00 35.91 1.94
1896 1941 4.006319 CTCCTTCCATTTCCTTCACAGAC 58.994 47.826 0.00 0.00 0.00 3.51
1951 1996 0.183971 AATTTCCACCGTCACCACCA 59.816 50.000 0.00 0.00 0.00 4.17
1954 1999 0.393448 TCGAATTTCCACCGTCACCA 59.607 50.000 0.00 0.00 0.00 4.17
1960 2005 3.793559 ACTTAGGATCGAATTTCCACCG 58.206 45.455 6.33 0.00 35.59 4.94
2043 2088 4.038763 CAGCTGCCACCATGAATTATCAAT 59.961 41.667 0.00 0.00 39.49 2.57
2049 2094 1.754803 CATCAGCTGCCACCATGAATT 59.245 47.619 9.47 0.00 0.00 2.17
2252 2297 5.136828 TGGCATAATACTACCCACCAAATG 58.863 41.667 0.00 0.00 0.00 2.32
2360 2408 4.379302 AGCTCATTTCTTCACCCTTTCT 57.621 40.909 0.00 0.00 0.00 2.52
2388 2436 9.878667 TCAATCAAATGAGCAATTTCATGTTAT 57.121 25.926 0.00 0.00 37.83 1.89
2429 2477 4.757149 AGAAGTTGTAGACAAAGGACATGC 59.243 41.667 0.00 0.00 37.63 4.06
2436 2484 7.872993 TGTCCATCTTAGAAGTTGTAGACAAAG 59.127 37.037 0.00 0.00 37.63 2.77
2610 2659 2.291741 GCTCTGAACTCAAACCACCTTG 59.708 50.000 0.00 0.00 0.00 3.61
2620 2669 1.004394 TCCTAGACCGCTCTGAACTCA 59.996 52.381 0.00 0.00 0.00 3.41
2621 2670 1.752683 TCCTAGACCGCTCTGAACTC 58.247 55.000 0.00 0.00 0.00 3.01
2622 2671 2.217510 TTCCTAGACCGCTCTGAACT 57.782 50.000 0.00 0.00 0.00 3.01
2623 2672 4.142227 TGTTATTCCTAGACCGCTCTGAAC 60.142 45.833 0.00 0.00 0.00 3.18
2624 2673 4.021229 TGTTATTCCTAGACCGCTCTGAA 58.979 43.478 0.00 0.00 0.00 3.02
2625 2674 3.628008 TGTTATTCCTAGACCGCTCTGA 58.372 45.455 0.00 0.00 0.00 3.27
2730 2779 7.338487 CTGGAGCAGATGACGAAGTAGTTGA 62.338 48.000 0.00 0.00 34.89 3.18
2797 2846 5.147330 ACCTCTGTACAACGATGAATGAA 57.853 39.130 0.00 0.00 0.00 2.57
2821 2870 6.751888 ACTATTCTGAACAAAAACAAGTGCAC 59.248 34.615 9.40 9.40 0.00 4.57
2843 2892 6.648192 AGAACTTCTTCCGCTACTACTACTA 58.352 40.000 0.00 0.00 0.00 1.82
2864 2913 0.326238 ATTAGGGGCTGACGGGAGAA 60.326 55.000 0.00 0.00 0.00 2.87
2866 2915 0.760945 AGATTAGGGGCTGACGGGAG 60.761 60.000 0.00 0.00 0.00 4.30
2867 2916 0.759436 GAGATTAGGGGCTGACGGGA 60.759 60.000 0.00 0.00 0.00 5.14
2868 2917 1.048724 TGAGATTAGGGGCTGACGGG 61.049 60.000 0.00 0.00 0.00 5.28
2870 2919 1.202580 CCTTGAGATTAGGGGCTGACG 60.203 57.143 0.00 0.00 0.00 4.35
2871 2920 1.475930 GCCTTGAGATTAGGGGCTGAC 60.476 57.143 0.00 0.00 39.68 3.51
2873 2922 0.179006 GGCCTTGAGATTAGGGGCTG 60.179 60.000 0.00 0.00 42.14 4.85
2874 2923 1.356494 GGGCCTTGAGATTAGGGGCT 61.356 60.000 0.84 0.00 42.86 5.19
2875 2924 1.151679 GGGCCTTGAGATTAGGGGC 59.848 63.158 0.84 0.00 42.60 5.80
2894 2948 2.283388 CATGTGTTGGGCTGGGCT 60.283 61.111 0.00 0.00 0.00 5.19
2895 2949 2.158561 GAACATGTGTTGGGCTGGGC 62.159 60.000 0.00 0.00 38.56 5.36
2896 2950 0.827089 TGAACATGTGTTGGGCTGGG 60.827 55.000 0.00 0.00 38.56 4.45
2897 2951 0.314935 GTGAACATGTGTTGGGCTGG 59.685 55.000 0.00 0.00 38.56 4.85
2898 2952 1.031235 TGTGAACATGTGTTGGGCTG 58.969 50.000 0.00 0.00 38.56 4.85
2921 2975 2.105766 AGAAAGCAAATGGAGGATGCC 58.894 47.619 0.00 0.00 40.93 4.40
2922 2976 4.202441 TCTAGAAAGCAAATGGAGGATGC 58.798 43.478 0.00 0.00 40.34 3.91
2935 2989 2.751806 AGCAGTGGCAAATCTAGAAAGC 59.248 45.455 0.00 0.90 44.61 3.51
2980 3034 7.044181 TGTTTTAACAAATGGCAACATCTTCA 58.956 30.769 0.00 0.00 45.55 3.02
3005 3059 6.543430 TGGATGGTGCAGCTTTATTTTTAT 57.457 33.333 18.08 0.00 0.00 1.40
3022 3076 8.640063 TGATAAGGTGAATGATTAATGGATGG 57.360 34.615 0.00 0.00 0.00 3.51
3038 3092 3.002656 CGGCTACTTTGCATGATAAGGTG 59.997 47.826 0.00 0.00 34.04 4.00
3058 3112 3.129638 TCAAAACAAGTTCTTGTTCCCGG 59.870 43.478 24.64 16.35 43.66 5.73
3084 3139 5.359576 GGTATCATGCCATTTGGTTCACTAA 59.640 40.000 0.00 0.00 37.57 2.24
3100 3155 8.511604 AAACCTCTACTTTCATTGGTATCATG 57.488 34.615 0.00 0.00 0.00 3.07
3104 3159 9.232473 GAGAAAAACCTCTACTTTCATTGGTAT 57.768 33.333 0.00 0.00 32.59 2.73
3109 3164 7.290813 ACTGGAGAAAAACCTCTACTTTCATT 58.709 34.615 0.00 0.00 32.59 2.57
3173 3228 1.001181 GACCGTGGGTACAGTTTAGCA 59.999 52.381 0.00 0.00 35.25 3.49
3221 3276 0.546122 ATCGCCCTCTGCAAACCATA 59.454 50.000 0.00 0.00 41.33 2.74
3402 3483 7.010923 GCCACTATACTTGAAGACAATGAGAAG 59.989 40.741 0.00 0.00 35.37 2.85
3407 3488 5.065218 GGTGCCACTATACTTGAAGACAATG 59.935 44.000 0.00 0.00 35.37 2.82
3416 3497 5.705609 AAAACTTGGTGCCACTATACTTG 57.294 39.130 0.00 0.00 0.00 3.16
3417 3498 5.830991 TCAAAAACTTGGTGCCACTATACTT 59.169 36.000 0.00 0.00 0.00 2.24
3418 3499 5.240844 GTCAAAAACTTGGTGCCACTATACT 59.759 40.000 0.00 0.00 0.00 2.12
3419 3500 5.009210 TGTCAAAAACTTGGTGCCACTATAC 59.991 40.000 0.00 0.00 0.00 1.47
3420 3501 5.133941 TGTCAAAAACTTGGTGCCACTATA 58.866 37.500 0.00 0.00 0.00 1.31
3421 3502 3.957497 TGTCAAAAACTTGGTGCCACTAT 59.043 39.130 0.00 0.00 0.00 2.12
3422 3503 3.357203 TGTCAAAAACTTGGTGCCACTA 58.643 40.909 0.00 0.00 0.00 2.74
3423 3504 2.175202 TGTCAAAAACTTGGTGCCACT 58.825 42.857 0.00 0.00 0.00 4.00
3424 3505 2.663826 TGTCAAAAACTTGGTGCCAC 57.336 45.000 0.00 0.00 0.00 5.01
3425 3506 2.499289 ACATGTCAAAAACTTGGTGCCA 59.501 40.909 0.00 0.00 37.35 4.92
3426 3507 3.177997 ACATGTCAAAAACTTGGTGCC 57.822 42.857 0.00 0.00 37.35 5.01
3427 3508 3.555547 GGAACATGTCAAAAACTTGGTGC 59.444 43.478 0.00 0.00 37.35 5.01
3428 3509 4.119136 GGGAACATGTCAAAAACTTGGTG 58.881 43.478 0.00 0.00 37.35 4.17
3429 3510 3.133901 GGGGAACATGTCAAAAACTTGGT 59.866 43.478 0.00 0.00 37.35 3.67
3430 3511 3.494223 GGGGGAACATGTCAAAAACTTGG 60.494 47.826 0.00 0.00 37.35 3.61
3431 3512 3.387699 AGGGGGAACATGTCAAAAACTTG 59.612 43.478 0.00 0.00 38.62 3.16
3454 3535 1.917872 AAGGCCGCAGAAATACCAAA 58.082 45.000 0.00 0.00 0.00 3.28
3497 3578 3.301794 TGGATATCCAGCACTTGCATT 57.698 42.857 20.98 0.00 42.01 3.56
3623 3704 2.147436 TTCATTTTGAACCTTGCCGC 57.853 45.000 0.00 0.00 30.26 6.53
3650 3731 5.163602 ACAAACATAAACCTTTCGTGCTCAA 60.164 36.000 0.00 0.00 0.00 3.02
3781 3864 5.067674 ACAAGCTACAGCACAAATTCTCAAA 59.932 36.000 3.70 0.00 45.16 2.69
3782 3865 4.580167 ACAAGCTACAGCACAAATTCTCAA 59.420 37.500 3.70 0.00 45.16 3.02
3841 3925 7.440856 ACCACAAACGCAAATTCTCAATTAAAT 59.559 29.630 0.00 0.00 0.00 1.40
3866 3950 5.535043 ACGGTAAAATGGATAAACGTCAC 57.465 39.130 0.00 0.00 0.00 3.67
3918 4002 9.182214 AGACCGTAAAACATAGTATCTCTAACA 57.818 33.333 0.00 0.00 31.94 2.41
3922 4006 9.939802 AAAAAGACCGTAAAACATAGTATCTCT 57.060 29.630 0.00 0.00 0.00 3.10
3923 4007 9.968743 CAAAAAGACCGTAAAACATAGTATCTC 57.031 33.333 0.00 0.00 0.00 2.75
3924 4008 9.715121 TCAAAAAGACCGTAAAACATAGTATCT 57.285 29.630 0.00 0.00 0.00 1.98
3925 4009 9.968743 CTCAAAAAGACCGTAAAACATAGTATC 57.031 33.333 0.00 0.00 0.00 2.24
3949 4033 9.601217 TTGCTCTAATTTCTATAACAACTCCTC 57.399 33.333 0.00 0.00 0.00 3.71
3950 4034 9.384764 GTTGCTCTAATTTCTATAACAACTCCT 57.615 33.333 0.00 0.00 33.78 3.69
3951 4035 9.384764 AGTTGCTCTAATTTCTATAACAACTCC 57.615 33.333 0.00 0.00 40.72 3.85
3955 4039 9.733556 TTGGAGTTGCTCTAATTTCTATAACAA 57.266 29.630 0.00 0.00 0.00 2.83
3956 4040 9.162764 GTTGGAGTTGCTCTAATTTCTATAACA 57.837 33.333 0.00 0.00 33.81 2.41
3986 4070 3.131478 CCATCCGTTTGGGGTCGC 61.131 66.667 0.00 0.00 36.01 5.19
4001 4085 3.122297 CAAAAATCAGACAAAAGCGCCA 58.878 40.909 2.29 0.00 0.00 5.69
4007 4091 5.578727 CCAAACGGACAAAAATCAGACAAAA 59.421 36.000 0.00 0.00 0.00 2.44
4016 4100 2.785713 CGACCCAAACGGACAAAAAT 57.214 45.000 0.00 0.00 34.64 1.82
4047 4131 7.081349 CGCACTACAAATCCAAATCTAAAACA 58.919 34.615 0.00 0.00 0.00 2.83
4053 4148 2.423538 GGCGCACTACAAATCCAAATCT 59.576 45.455 10.83 0.00 0.00 2.40
4054 4149 2.791158 CGGCGCACTACAAATCCAAATC 60.791 50.000 10.83 0.00 0.00 2.17
4061 4156 1.743995 GGGTCGGCGCACTACAAAT 60.744 57.895 10.83 0.00 0.00 2.32
4063 4158 2.457743 AATGGGTCGGCGCACTACAA 62.458 55.000 9.66 0.00 40.41 2.41
4064 4159 2.457743 AAATGGGTCGGCGCACTACA 62.458 55.000 9.66 4.04 40.41 2.74
4066 4161 1.448893 GAAATGGGTCGGCGCACTA 60.449 57.895 9.66 0.00 40.41 2.74
4094 4198 8.410652 GCAGTGAGCCATTTTCACAAATTGTG 62.411 42.308 19.23 19.23 45.72 3.33
4095 4199 5.051816 CAGTGAGCCATTTTCACAAATTGT 58.948 37.500 7.96 0.00 45.72 2.71
4111 4215 1.805345 GCATGATCTATGGCAGTGAGC 59.195 52.381 0.00 0.00 44.65 4.26
4112 4216 3.404224 AGCATGATCTATGGCAGTGAG 57.596 47.619 0.00 0.00 37.26 3.51
4113 4217 3.306571 GCTAGCATGATCTATGGCAGTGA 60.307 47.826 10.63 0.00 37.26 3.41
4114 4218 3.001414 GCTAGCATGATCTATGGCAGTG 58.999 50.000 10.63 0.00 37.26 3.66
4121 4225 1.269958 TGGCCGCTAGCATGATCTAT 58.730 50.000 16.45 0.00 46.50 1.98
4122 4226 1.269958 ATGGCCGCTAGCATGATCTA 58.730 50.000 16.45 0.00 46.50 1.98
4123 4227 1.269958 TATGGCCGCTAGCATGATCT 58.730 50.000 16.45 0.00 46.50 2.75
4132 4240 1.301401 GGCAACGATATGGCCGCTA 60.301 57.895 0.00 0.00 39.79 4.26
4148 4256 4.496927 CCGGCATTTGCTTCGGGC 62.497 66.667 11.07 0.00 40.55 6.13
4149 4257 1.101049 ATACCGGCATTTGCTTCGGG 61.101 55.000 19.60 11.18 45.76 5.14
4150 4258 0.307760 GATACCGGCATTTGCTTCGG 59.692 55.000 15.66 15.66 46.50 4.30
4151 4259 1.013596 TGATACCGGCATTTGCTTCG 58.986 50.000 0.00 0.00 41.70 3.79
4152 4260 2.859806 GCATGATACCGGCATTTGCTTC 60.860 50.000 0.00 0.00 41.70 3.86
4153 4261 1.067516 GCATGATACCGGCATTTGCTT 59.932 47.619 0.00 0.00 41.70 3.91
4154 4262 0.670162 GCATGATACCGGCATTTGCT 59.330 50.000 0.00 0.00 41.70 3.91
4155 4263 0.318955 GGCATGATACCGGCATTTGC 60.319 55.000 0.00 8.20 41.14 3.68
4156 4264 1.001048 CTGGCATGATACCGGCATTTG 60.001 52.381 0.00 0.00 37.05 2.32
4157 4265 1.321474 CTGGCATGATACCGGCATTT 58.679 50.000 0.00 0.00 37.05 2.32
4158 4266 3.025924 CTGGCATGATACCGGCATT 57.974 52.632 0.00 0.00 37.05 3.56
4166 4274 6.405731 GGTGTTATTTTGAAGCTGGCATGATA 60.406 38.462 0.00 0.00 0.00 2.15
4178 4286 6.516739 TGAACTGTGTGGTGTTATTTTGAA 57.483 33.333 0.00 0.00 0.00 2.69
4179 4287 6.096141 ACATGAACTGTGTGGTGTTATTTTGA 59.904 34.615 0.00 0.00 36.48 2.69
4181 4289 6.463995 ACATGAACTGTGTGGTGTTATTTT 57.536 33.333 0.00 0.00 36.48 1.82
4182 4290 6.272318 CAACATGAACTGTGTGGTGTTATTT 58.728 36.000 0.00 0.00 38.39 1.40
4183 4291 5.221224 CCAACATGAACTGTGTGGTGTTATT 60.221 40.000 0.00 0.00 38.39 1.40
4187 4295 2.023673 CCAACATGAACTGTGTGGTGT 58.976 47.619 0.00 0.00 38.39 4.16
4188 4296 1.269206 GCCAACATGAACTGTGTGGTG 60.269 52.381 0.00 0.69 38.39 4.17
4190 4298 0.040157 CGCCAACATGAACTGTGTGG 60.040 55.000 0.00 0.00 38.39 4.17
4191 4299 0.661187 GCGCCAACATGAACTGTGTG 60.661 55.000 0.00 0.00 38.39 3.82
4192 4300 1.100463 TGCGCCAACATGAACTGTGT 61.100 50.000 4.18 0.00 38.39 3.72
4231 4359 1.617850 CCCTTTTTGTGTGCTGGCATA 59.382 47.619 0.00 0.00 0.00 3.14
4249 4377 1.379146 GAACTCAAGTCCCACCCCC 59.621 63.158 0.00 0.00 0.00 5.40
4250 4378 1.003718 CGAACTCAAGTCCCACCCC 60.004 63.158 0.00 0.00 0.00 4.95
4282 4411 2.245438 TTATGCCGGCATGACCACGA 62.245 55.000 44.59 25.18 39.03 4.35
4329 4474 2.456989 TCAAGTTTGACGACGAGTGAC 58.543 47.619 0.00 0.00 31.01 3.67
4342 4487 0.250901 AGGCCGACATGCTCAAGTTT 60.251 50.000 0.00 0.00 0.00 2.66
4443 4589 0.667487 CGAAAGAACTGGCTCTCGCA 60.667 55.000 0.00 0.00 38.10 5.10
4454 4600 1.266989 CCAAGACCAAGGCGAAAGAAC 59.733 52.381 0.00 0.00 0.00 3.01
4478 4624 2.597805 TAGAGATCGAGGCCGCCC 60.598 66.667 5.55 0.00 35.37 6.13
4496 4642 1.101331 GGAGAAGCAAGGCAAGATGG 58.899 55.000 0.00 0.00 0.00 3.51
4504 4650 2.124942 GGAGGCGGAGAAGCAAGG 60.125 66.667 0.00 0.00 39.27 3.61
4529 4675 0.455005 GGAGAAGCAAGCCAAGATGC 59.545 55.000 0.00 0.00 42.87 3.91
4548 4694 1.227497 GAGGCTTGAGATGGAGGCG 60.227 63.158 0.00 0.00 42.67 5.52
4551 4697 0.758123 GGAGGAGGCTTGAGATGGAG 59.242 60.000 0.00 0.00 0.00 3.86
4556 4702 0.987294 CCAAAGGAGGAGGCTTGAGA 59.013 55.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.