Multiple sequence alignment - TraesCS5B01G121100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G121100 chr5B 100.000 2723 0 0 1 2723 216391474 216394196 0.000000e+00 5029.0
1 TraesCS5B01G121100 chr5B 96.689 151 5 0 83 233 491047382 491047532 4.500000e-63 252.0
2 TraesCS5B01G121100 chr5D 96.105 1335 37 5 1393 2723 193507368 193508691 0.000000e+00 2163.0
3 TraesCS5B01G121100 chr5D 97.897 428 8 1 919 1346 193506614 193507040 0.000000e+00 739.0
4 TraesCS5B01G121100 chr5D 97.574 371 8 1 549 918 193506213 193506583 3.830000e-178 634.0
5 TraesCS5B01G121100 chr5D 87.171 304 16 7 235 538 193505787 193506067 9.400000e-85 324.0
6 TraesCS5B01G121100 chr5D 96.250 80 3 0 1 80 193505714 193505793 6.120000e-27 132.0
7 TraesCS5B01G121100 chr5A 91.419 1142 34 15 796 1901 248537260 248536147 0.000000e+00 1507.0
8 TraesCS5B01G121100 chr5A 96.947 655 16 2 1900 2551 248536089 248535436 0.000000e+00 1096.0
9 TraesCS5B01G121100 chr5A 93.023 387 26 1 309 694 248540543 248540157 5.090000e-157 564.0
10 TraesCS5B01G121100 chr5A 98.089 157 3 0 2567 2723 248535317 248535161 9.610000e-70 274.0
11 TraesCS5B01G121100 chr5A 96.364 110 4 0 690 799 248537674 248537565 5.990000e-42 182.0
12 TraesCS5B01G121100 chr5A 96.429 84 1 2 1 82 248540665 248540582 1.310000e-28 137.0
13 TraesCS5B01G121100 chr6B 96.732 153 5 0 83 235 19353923 19353771 3.480000e-64 255.0
14 TraesCS5B01G121100 chr2A 96.711 152 5 0 83 234 52584029 52584180 1.250000e-63 254.0
15 TraesCS5B01G121100 chr7B 96.689 151 5 0 83 233 389104172 389104322 4.500000e-63 252.0
16 TraesCS5B01G121100 chr2B 96.689 151 5 0 83 233 741442598 741442748 4.500000e-63 252.0
17 TraesCS5B01G121100 chr2D 95.302 149 7 0 83 231 9791427 9791575 1.260000e-58 237.0
18 TraesCS5B01G121100 chr6A 87.387 111 13 1 81 191 553925805 553925914 2.850000e-25 126.0
19 TraesCS5B01G121100 chr7A 100.000 49 0 0 91 139 79643739 79643691 1.040000e-14 91.6
20 TraesCS5B01G121100 chr4B 89.855 69 7 0 1410 1478 106970435 106970503 3.730000e-14 89.8
21 TraesCS5B01G121100 chr4D 86.957 69 9 0 1410 1478 74606075 74606143 8.080000e-11 78.7
22 TraesCS5B01G121100 chr4A 86.567 67 9 0 1412 1478 513089722 513089656 1.050000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G121100 chr5B 216391474 216394196 2722 False 5029.000000 5029 100.0000 1 2723 1 chr5B.!!$F1 2722
1 TraesCS5B01G121100 chr5D 193505714 193508691 2977 False 798.400000 2163 94.9994 1 2723 5 chr5D.!!$F1 2722
2 TraesCS5B01G121100 chr5A 248535161 248540665 5504 True 626.666667 1507 95.3785 1 2723 6 chr5A.!!$R1 2722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 153 0.035152 TGAATCCAGCCGTGCAATCT 60.035 50.0 0.00 0.0 0.0 2.40 F
155 158 0.109597 CCAGCCGTGCAATCTTGTTC 60.110 55.0 0.00 0.0 0.0 3.18 F
158 161 0.310543 GCCGTGCAATCTTGTTCACA 59.689 50.0 0.00 0.0 0.0 3.58 F
185 188 0.325602 AACGGCCGGTGGATTCTTTA 59.674 50.0 31.76 0.0 0.0 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1141 4106 1.003759 CGAACCTATGGACGACTCTCG 60.004 57.143 0.00 0.0 46.93 4.04 R
1535 4781 1.223211 CGGCCACCACATCCACATA 59.777 57.895 2.24 0.0 0.00 2.29 R
1591 4837 1.769465 AGCATCATCATCAGGCTCAGT 59.231 47.619 0.00 0.0 0.00 3.41 R
1793 5039 4.140536 AGGGAAAAGAAGCAAGTGAGAAG 58.859 43.478 0.00 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 80 7.556733 AGTTTGTGCATCAAATGACATTTTT 57.443 28.000 10.77 0.00 45.88 1.94
96 99 2.779755 TTTTCGAGCAAGGCTATCCA 57.220 45.000 0.00 0.00 39.88 3.41
97 100 2.315925 TTTCGAGCAAGGCTATCCAG 57.684 50.000 0.00 0.00 39.88 3.86
98 101 1.485124 TTCGAGCAAGGCTATCCAGA 58.515 50.000 0.00 0.00 39.88 3.86
99 102 0.747255 TCGAGCAAGGCTATCCAGAC 59.253 55.000 0.00 0.00 39.88 3.51
100 103 0.596083 CGAGCAAGGCTATCCAGACG 60.596 60.000 0.00 0.00 39.88 4.18
101 104 0.747255 GAGCAAGGCTATCCAGACGA 59.253 55.000 0.00 0.00 39.88 4.20
102 105 0.461961 AGCAAGGCTATCCAGACGAC 59.538 55.000 0.00 0.00 36.99 4.34
103 106 0.175760 GCAAGGCTATCCAGACGACA 59.824 55.000 0.00 0.00 33.60 4.35
104 107 1.202580 GCAAGGCTATCCAGACGACAT 60.203 52.381 0.00 0.00 33.60 3.06
105 108 2.743183 GCAAGGCTATCCAGACGACATT 60.743 50.000 0.00 0.00 33.60 2.71
106 109 3.492656 GCAAGGCTATCCAGACGACATTA 60.493 47.826 0.00 0.00 33.60 1.90
107 110 4.800914 GCAAGGCTATCCAGACGACATTAT 60.801 45.833 0.00 0.00 33.60 1.28
108 111 5.300752 CAAGGCTATCCAGACGACATTATT 58.699 41.667 0.00 0.00 33.60 1.40
109 112 5.552870 AGGCTATCCAGACGACATTATTT 57.447 39.130 0.00 0.00 33.60 1.40
110 113 5.300752 AGGCTATCCAGACGACATTATTTG 58.699 41.667 0.00 0.00 33.60 2.32
111 114 4.452455 GGCTATCCAGACGACATTATTTGG 59.548 45.833 0.00 0.00 0.00 3.28
112 115 5.297547 GCTATCCAGACGACATTATTTGGA 58.702 41.667 0.00 0.00 38.90 3.53
113 116 5.177696 GCTATCCAGACGACATTATTTGGAC 59.822 44.000 0.00 0.00 37.52 4.02
114 117 3.517602 TCCAGACGACATTATTTGGACG 58.482 45.455 0.00 0.00 36.08 4.79
115 118 3.193903 TCCAGACGACATTATTTGGACGA 59.806 43.478 0.00 0.00 34.79 4.20
116 119 4.119862 CCAGACGACATTATTTGGACGAT 58.880 43.478 0.00 0.00 34.79 3.73
117 120 4.570772 CCAGACGACATTATTTGGACGATT 59.429 41.667 0.00 0.00 34.79 3.34
118 121 5.064707 CCAGACGACATTATTTGGACGATTT 59.935 40.000 0.00 0.00 34.79 2.17
119 122 5.959527 CAGACGACATTATTTGGACGATTTG 59.040 40.000 0.00 0.00 34.79 2.32
120 123 4.658071 ACGACATTATTTGGACGATTTGC 58.342 39.130 0.00 0.00 34.79 3.68
121 124 4.155099 ACGACATTATTTGGACGATTTGCA 59.845 37.500 0.00 0.00 34.79 4.08
122 125 4.730042 CGACATTATTTGGACGATTTGCAG 59.270 41.667 0.00 0.00 33.33 4.41
123 126 4.423732 ACATTATTTGGACGATTTGCAGC 58.576 39.130 0.00 0.00 0.00 5.25
124 127 3.502191 TTATTTGGACGATTTGCAGCC 57.498 42.857 0.00 0.00 0.00 4.85
125 128 0.171007 ATTTGGACGATTTGCAGCCG 59.829 50.000 0.00 3.47 0.00 5.52
126 129 0.886938 TTTGGACGATTTGCAGCCGA 60.887 50.000 10.63 0.00 0.00 5.54
127 130 1.573829 TTGGACGATTTGCAGCCGAC 61.574 55.000 10.63 5.26 0.00 4.79
128 131 2.395690 GACGATTTGCAGCCGACG 59.604 61.111 10.63 5.63 0.00 5.12
129 132 2.048597 ACGATTTGCAGCCGACGA 60.049 55.556 10.63 0.00 0.00 4.20
130 133 1.421410 GACGATTTGCAGCCGACGAT 61.421 55.000 10.63 0.00 0.00 3.73
131 134 1.019278 ACGATTTGCAGCCGACGATT 61.019 50.000 10.63 0.00 0.00 3.34
132 135 0.587242 CGATTTGCAGCCGACGATTG 60.587 55.000 0.00 0.00 0.00 2.67
133 136 0.726827 GATTTGCAGCCGACGATTGA 59.273 50.000 0.00 0.00 0.00 2.57
134 137 1.130373 GATTTGCAGCCGACGATTGAA 59.870 47.619 0.00 0.00 0.00 2.69
135 138 1.164411 TTTGCAGCCGACGATTGAAT 58.836 45.000 0.00 0.00 0.00 2.57
136 139 0.726827 TTGCAGCCGACGATTGAATC 59.273 50.000 0.00 0.00 0.00 2.52
137 140 1.089481 TGCAGCCGACGATTGAATCC 61.089 55.000 0.00 0.00 0.00 3.01
138 141 1.089481 GCAGCCGACGATTGAATCCA 61.089 55.000 0.00 0.00 0.00 3.41
139 142 0.933097 CAGCCGACGATTGAATCCAG 59.067 55.000 0.00 0.00 0.00 3.86
140 143 0.811616 AGCCGACGATTGAATCCAGC 60.812 55.000 0.00 0.00 0.00 4.85
141 144 1.776034 GCCGACGATTGAATCCAGCC 61.776 60.000 0.00 0.00 0.00 4.85
142 145 1.490693 CCGACGATTGAATCCAGCCG 61.491 60.000 0.00 0.00 0.00 5.52
143 146 0.806102 CGACGATTGAATCCAGCCGT 60.806 55.000 0.00 0.00 35.80 5.68
144 147 0.652592 GACGATTGAATCCAGCCGTG 59.347 55.000 0.00 0.00 34.20 4.94
145 148 1.353103 CGATTGAATCCAGCCGTGC 59.647 57.895 0.00 0.00 0.00 5.34
146 149 1.368345 CGATTGAATCCAGCCGTGCA 61.368 55.000 0.00 0.00 0.00 4.57
147 150 0.810648 GATTGAATCCAGCCGTGCAA 59.189 50.000 0.00 0.00 0.00 4.08
148 151 1.406539 GATTGAATCCAGCCGTGCAAT 59.593 47.619 0.00 0.00 0.00 3.56
149 152 0.810648 TTGAATCCAGCCGTGCAATC 59.189 50.000 0.00 0.00 0.00 2.67
150 153 0.035152 TGAATCCAGCCGTGCAATCT 60.035 50.000 0.00 0.00 0.00 2.40
151 154 1.098050 GAATCCAGCCGTGCAATCTT 58.902 50.000 0.00 0.00 0.00 2.40
152 155 0.813184 AATCCAGCCGTGCAATCTTG 59.187 50.000 0.00 0.00 0.00 3.02
153 156 0.322816 ATCCAGCCGTGCAATCTTGT 60.323 50.000 0.00 0.00 0.00 3.16
154 157 0.537143 TCCAGCCGTGCAATCTTGTT 60.537 50.000 0.00 0.00 0.00 2.83
155 158 0.109597 CCAGCCGTGCAATCTTGTTC 60.110 55.000 0.00 0.00 0.00 3.18
156 159 0.592637 CAGCCGTGCAATCTTGTTCA 59.407 50.000 0.00 0.00 0.00 3.18
157 160 0.593128 AGCCGTGCAATCTTGTTCAC 59.407 50.000 0.00 0.00 0.00 3.18
158 161 0.310543 GCCGTGCAATCTTGTTCACA 59.689 50.000 0.00 0.00 0.00 3.58
159 162 1.664016 GCCGTGCAATCTTGTTCACAG 60.664 52.381 0.00 0.00 0.00 3.66
160 163 1.664016 CCGTGCAATCTTGTTCACAGC 60.664 52.381 0.00 0.00 0.00 4.40
161 164 1.002576 CGTGCAATCTTGTTCACAGCA 60.003 47.619 0.00 0.00 0.00 4.41
162 165 2.658285 GTGCAATCTTGTTCACAGCAG 58.342 47.619 0.00 0.00 0.00 4.24
163 166 2.291465 GTGCAATCTTGTTCACAGCAGA 59.709 45.455 0.00 0.00 0.00 4.26
164 167 2.551032 TGCAATCTTGTTCACAGCAGAG 59.449 45.455 0.00 0.00 0.00 3.35
165 168 2.667724 GCAATCTTGTTCACAGCAGAGC 60.668 50.000 0.00 0.00 0.00 4.09
166 169 2.551032 CAATCTTGTTCACAGCAGAGCA 59.449 45.455 0.00 0.00 0.00 4.26
167 170 2.330440 TCTTGTTCACAGCAGAGCAA 57.670 45.000 3.83 3.83 36.56 3.91
168 171 1.942657 TCTTGTTCACAGCAGAGCAAC 59.057 47.619 0.00 0.00 34.46 4.17
169 172 0.657312 TTGTTCACAGCAGAGCAACG 59.343 50.000 0.00 0.00 34.46 4.10
170 173 1.159713 TGTTCACAGCAGAGCAACGG 61.160 55.000 0.00 0.00 0.00 4.44
171 174 2.253758 TTCACAGCAGAGCAACGGC 61.254 57.895 0.00 0.00 39.85 5.68
172 175 3.730761 CACAGCAGAGCAACGGCC 61.731 66.667 0.00 0.00 42.56 6.13
179 182 4.778143 GAGCAACGGCCGGTGGAT 62.778 66.667 41.69 23.44 42.56 3.41
180 183 4.344865 AGCAACGGCCGGTGGATT 62.345 61.111 41.69 18.90 42.56 3.01
181 184 3.810896 GCAACGGCCGGTGGATTC 61.811 66.667 41.69 23.32 32.56 2.52
182 185 2.046314 CAACGGCCGGTGGATTCT 60.046 61.111 35.73 4.74 0.00 2.40
183 186 1.674322 CAACGGCCGGTGGATTCTT 60.674 57.895 35.73 11.76 0.00 2.52
184 187 1.074248 AACGGCCGGTGGATTCTTT 59.926 52.632 31.76 8.20 0.00 2.52
185 188 0.325602 AACGGCCGGTGGATTCTTTA 59.674 50.000 31.76 0.00 0.00 1.85
186 189 0.325602 ACGGCCGGTGGATTCTTTAA 59.674 50.000 31.76 0.00 0.00 1.52
187 190 1.064979 ACGGCCGGTGGATTCTTTAAT 60.065 47.619 31.76 0.00 0.00 1.40
188 191 2.021457 CGGCCGGTGGATTCTTTAATT 58.979 47.619 20.10 0.00 0.00 1.40
189 192 2.223479 CGGCCGGTGGATTCTTTAATTG 60.223 50.000 20.10 0.00 0.00 2.32
190 193 2.758423 GGCCGGTGGATTCTTTAATTGT 59.242 45.455 1.90 0.00 0.00 2.71
191 194 3.428862 GGCCGGTGGATTCTTTAATTGTG 60.429 47.826 1.90 0.00 0.00 3.33
192 195 3.769536 CCGGTGGATTCTTTAATTGTGC 58.230 45.455 0.00 0.00 0.00 4.57
193 196 3.192422 CCGGTGGATTCTTTAATTGTGCA 59.808 43.478 0.00 0.00 0.00 4.57
194 197 4.165779 CGGTGGATTCTTTAATTGTGCAC 58.834 43.478 10.75 10.75 0.00 4.57
195 198 4.320861 CGGTGGATTCTTTAATTGTGCACA 60.321 41.667 17.42 17.42 33.52 4.57
196 199 5.163513 GGTGGATTCTTTAATTGTGCACAG 58.836 41.667 20.59 7.43 33.52 3.66
197 200 5.048083 GGTGGATTCTTTAATTGTGCACAGA 60.048 40.000 20.59 9.90 33.52 3.41
198 201 6.350445 GGTGGATTCTTTAATTGTGCACAGAT 60.350 38.462 20.59 14.99 33.52 2.90
199 202 6.749118 GTGGATTCTTTAATTGTGCACAGATC 59.251 38.462 20.59 12.86 32.36 2.75
200 203 5.967674 GGATTCTTTAATTGTGCACAGATCG 59.032 40.000 20.59 7.97 0.00 3.69
201 204 5.940192 TTCTTTAATTGTGCACAGATCGT 57.060 34.783 20.59 7.28 0.00 3.73
202 205 5.530519 TCTTTAATTGTGCACAGATCGTC 57.469 39.130 20.59 0.00 0.00 4.20
203 206 4.391830 TCTTTAATTGTGCACAGATCGTCC 59.608 41.667 20.59 0.00 0.00 4.79
204 207 2.183478 AATTGTGCACAGATCGTCCA 57.817 45.000 20.59 2.44 0.00 4.02
205 208 2.183478 ATTGTGCACAGATCGTCCAA 57.817 45.000 20.59 1.62 0.00 3.53
206 209 1.960417 TTGTGCACAGATCGTCCAAA 58.040 45.000 20.59 0.00 0.00 3.28
207 210 1.960417 TGTGCACAGATCGTCCAAAA 58.040 45.000 17.42 0.00 0.00 2.44
208 211 1.872952 TGTGCACAGATCGTCCAAAAG 59.127 47.619 17.42 0.00 0.00 2.27
209 212 1.873591 GTGCACAGATCGTCCAAAAGT 59.126 47.619 13.17 0.00 0.00 2.66
210 213 2.290641 GTGCACAGATCGTCCAAAAGTT 59.709 45.455 13.17 0.00 0.00 2.66
211 214 2.948979 TGCACAGATCGTCCAAAAGTTT 59.051 40.909 0.00 0.00 0.00 2.66
212 215 4.024387 GTGCACAGATCGTCCAAAAGTTTA 60.024 41.667 13.17 0.00 0.00 2.01
213 216 4.759693 TGCACAGATCGTCCAAAAGTTTAT 59.240 37.500 0.00 0.00 0.00 1.40
214 217 5.106712 TGCACAGATCGTCCAAAAGTTTATC 60.107 40.000 0.00 0.00 0.00 1.75
215 218 5.550981 CACAGATCGTCCAAAAGTTTATCG 58.449 41.667 0.00 0.00 0.00 2.92
216 219 5.120208 CACAGATCGTCCAAAAGTTTATCGT 59.880 40.000 0.00 0.00 0.00 3.73
217 220 5.120208 ACAGATCGTCCAAAAGTTTATCGTG 59.880 40.000 0.00 0.00 0.00 4.35
218 221 5.120208 CAGATCGTCCAAAAGTTTATCGTGT 59.880 40.000 0.00 0.00 0.00 4.49
219 222 4.718858 TCGTCCAAAAGTTTATCGTGTG 57.281 40.909 0.00 0.00 0.00 3.82
220 223 4.121317 TCGTCCAAAAGTTTATCGTGTGT 58.879 39.130 0.00 0.00 0.00 3.72
221 224 4.025563 TCGTCCAAAAGTTTATCGTGTGTG 60.026 41.667 0.00 0.00 0.00 3.82
222 225 4.025563 CGTCCAAAAGTTTATCGTGTGTGA 60.026 41.667 0.00 0.00 0.00 3.58
223 226 5.502706 CGTCCAAAAGTTTATCGTGTGTGAA 60.503 40.000 0.00 0.00 0.00 3.18
224 227 5.907391 GTCCAAAAGTTTATCGTGTGTGAAG 59.093 40.000 0.00 0.00 0.00 3.02
225 228 4.675114 CCAAAAGTTTATCGTGTGTGAAGC 59.325 41.667 0.00 0.00 0.00 3.86
226 229 5.270083 CAAAAGTTTATCGTGTGTGAAGCA 58.730 37.500 0.00 0.00 0.00 3.91
227 230 5.493133 AAAGTTTATCGTGTGTGAAGCAA 57.507 34.783 0.00 0.00 0.00 3.91
228 231 5.689383 AAGTTTATCGTGTGTGAAGCAAT 57.311 34.783 0.00 0.00 0.00 3.56
229 232 5.689383 AGTTTATCGTGTGTGAAGCAATT 57.311 34.783 0.00 0.00 0.00 2.32
230 233 6.072112 AGTTTATCGTGTGTGAAGCAATTT 57.928 33.333 0.00 0.00 0.00 1.82
231 234 6.142817 AGTTTATCGTGTGTGAAGCAATTTC 58.857 36.000 0.00 0.00 36.29 2.17
232 235 2.661504 TCGTGTGTGAAGCAATTTCG 57.338 45.000 0.00 0.00 38.71 3.46
233 236 1.937223 TCGTGTGTGAAGCAATTTCGT 59.063 42.857 0.00 0.00 38.71 3.85
234 237 2.353269 TCGTGTGTGAAGCAATTTCGTT 59.647 40.909 0.00 0.00 38.71 3.85
235 238 3.105203 CGTGTGTGAAGCAATTTCGTTT 58.895 40.909 0.00 0.00 38.71 3.60
236 239 3.545873 CGTGTGTGAAGCAATTTCGTTTT 59.454 39.130 0.00 0.00 38.71 2.43
279 282 8.890718 GGATACATGTCATCTCATTTCATATGG 58.109 37.037 0.00 0.00 0.00 2.74
308 311 7.766736 AGTAATCCTTTCCTATAAACCAGGT 57.233 36.000 0.00 0.00 34.56 4.00
309 312 8.171337 AGTAATCCTTTCCTATAAACCAGGTT 57.829 34.615 0.00 0.00 34.56 3.50
310 313 8.621073 AGTAATCCTTTCCTATAAACCAGGTTT 58.379 33.333 21.55 21.55 39.24 3.27
311 314 9.251440 GTAATCCTTTCCTATAAACCAGGTTTT 57.749 33.333 22.95 12.76 37.01 2.43
313 316 9.475620 AATCCTTTCCTATAAACCAGGTTTTAG 57.524 33.333 22.95 20.06 37.01 1.85
314 317 7.992295 TCCTTTCCTATAAACCAGGTTTTAGT 58.008 34.615 22.95 11.79 37.01 2.24
315 318 9.114938 TCCTTTCCTATAAACCAGGTTTTAGTA 57.885 33.333 22.95 12.25 37.01 1.82
316 319 9.743581 CCTTTCCTATAAACCAGGTTTTAGTAA 57.256 33.333 22.95 13.32 37.01 2.24
350 353 1.489230 ACCAAAGGAGGCCTTATACGG 59.511 52.381 6.77 8.41 43.92 4.02
413 416 9.476202 AAAATTACCATCTTGCTAAGTTTTGTC 57.524 29.630 0.00 0.00 0.00 3.18
496 499 0.953471 TCAAATTCACGGCCACCTCG 60.953 55.000 2.24 0.00 0.00 4.63
574 713 5.880054 TTTCAAGCACTATTTACCTCTGC 57.120 39.130 0.00 0.00 0.00 4.26
610 749 1.073763 TCAGCAGTAAAGCCACACCAT 59.926 47.619 0.00 0.00 34.23 3.55
622 761 1.304381 ACACCATCGGCTGCCAAAT 60.304 52.632 20.29 8.64 0.00 2.32
846 3780 1.227674 GCACATTCTCTAGGGCCCG 60.228 63.158 18.44 2.43 0.00 6.13
1034 3998 6.258287 CCATCACTTGAGCTTCAGAGATAAAG 59.742 42.308 5.94 0.00 0.00 1.85
1141 4106 8.554528 CACAAATACATCATTCAGACATAGACC 58.445 37.037 0.00 0.00 0.00 3.85
1290 4255 2.993264 ATGGTTCGTCGTCCCGGT 60.993 61.111 0.00 0.00 0.00 5.28
1492 4738 1.893786 GAGCATGGAGTGGTCGAGT 59.106 57.895 0.00 0.00 44.51 4.18
1551 4797 1.095228 CGGTATGTGGATGTGGTGGC 61.095 60.000 0.00 0.00 0.00 5.01
1591 4837 3.379445 GTGGTCCGGCGAAGGAGA 61.379 66.667 9.30 0.00 41.68 3.71
1684 4930 0.107410 AGACGCCACCAAACTGACAA 60.107 50.000 0.00 0.00 0.00 3.18
1705 4951 4.946784 ACAGTTTGGATGCGAGAATTAC 57.053 40.909 0.00 0.00 0.00 1.89
1765 5011 7.844070 ATAATATCGCATTGTCGATCGATAG 57.156 36.000 22.50 12.24 44.97 2.08
1793 5039 8.436046 ACATCTTTCTGAATCAATCTTCTAGC 57.564 34.615 0.00 0.00 0.00 3.42
1889 5135 8.711457 GGTTCTGTTTGAAATTATCATGGTTTG 58.289 33.333 0.00 0.00 38.03 2.93
1905 5210 6.832900 TCATGGTTTGGCATGTTCATAGATTA 59.167 34.615 0.00 0.00 0.00 1.75
1948 5253 7.713942 TCAGAACCTTAAGTTAGTTTGGAAGAC 59.286 37.037 0.97 0.00 39.40 3.01
1965 5270 5.707298 TGGAAGACTGAAAAGATGATTCACC 59.293 40.000 0.00 0.00 33.47 4.02
2113 5418 0.163788 CTTGACACGGCAGCTAAACG 59.836 55.000 0.00 0.00 0.00 3.60
2379 5685 1.856629 CAACAAGCCCAGGAATGGAT 58.143 50.000 0.00 0.00 0.00 3.41
2584 5996 5.067544 GGTAGTTAGTCATGACAGAGTACCC 59.932 48.000 31.46 22.13 37.87 3.69
2631 6043 9.034800 ACCATAATCAAATCACAAATAACCTGT 57.965 29.630 0.00 0.00 0.00 4.00
2682 6094 6.202379 GGATAATGACATCATATGATCTGGCG 59.798 42.308 15.49 6.82 35.10 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 39 6.978080 GCACAAACTTTTCCATTTGAGTCTAA 59.022 34.615 3.85 0.00 38.82 2.10
77 80 2.236146 TCTGGATAGCCTTGCTCGAAAA 59.764 45.455 0.00 0.00 40.44 2.29
78 81 1.831106 TCTGGATAGCCTTGCTCGAAA 59.169 47.619 0.00 0.00 40.44 3.46
79 82 1.137086 GTCTGGATAGCCTTGCTCGAA 59.863 52.381 0.00 0.00 40.44 3.71
80 83 0.747255 GTCTGGATAGCCTTGCTCGA 59.253 55.000 0.00 0.00 40.44 4.04
81 84 0.596083 CGTCTGGATAGCCTTGCTCG 60.596 60.000 0.00 0.00 40.44 5.03
82 85 0.747255 TCGTCTGGATAGCCTTGCTC 59.253 55.000 0.00 0.00 40.44 4.26
83 86 0.461961 GTCGTCTGGATAGCCTTGCT 59.538 55.000 0.00 0.00 43.41 3.91
84 87 0.175760 TGTCGTCTGGATAGCCTTGC 59.824 55.000 0.00 0.00 34.31 4.01
85 88 2.898729 ATGTCGTCTGGATAGCCTTG 57.101 50.000 0.00 0.00 34.31 3.61
86 89 5.552870 AATAATGTCGTCTGGATAGCCTT 57.447 39.130 0.00 0.00 34.31 4.35
87 90 5.300752 CAAATAATGTCGTCTGGATAGCCT 58.699 41.667 0.00 0.00 34.31 4.58
88 91 4.452455 CCAAATAATGTCGTCTGGATAGCC 59.548 45.833 0.00 0.00 0.00 3.93
89 92 5.177696 GTCCAAATAATGTCGTCTGGATAGC 59.822 44.000 0.00 0.00 35.52 2.97
90 93 5.402568 CGTCCAAATAATGTCGTCTGGATAG 59.597 44.000 0.00 0.00 35.52 2.08
91 94 5.068067 TCGTCCAAATAATGTCGTCTGGATA 59.932 40.000 0.00 0.00 35.52 2.59
92 95 4.119862 CGTCCAAATAATGTCGTCTGGAT 58.880 43.478 0.00 0.00 35.52 3.41
93 96 3.193903 TCGTCCAAATAATGTCGTCTGGA 59.806 43.478 0.00 0.00 0.00 3.86
94 97 3.517602 TCGTCCAAATAATGTCGTCTGG 58.482 45.455 0.00 0.00 0.00 3.86
95 98 5.718649 AATCGTCCAAATAATGTCGTCTG 57.281 39.130 0.00 0.00 0.00 3.51
96 99 5.447279 GCAAATCGTCCAAATAATGTCGTCT 60.447 40.000 0.00 0.00 0.00 4.18
97 100 4.728608 GCAAATCGTCCAAATAATGTCGTC 59.271 41.667 0.00 0.00 0.00 4.20
98 101 4.155099 TGCAAATCGTCCAAATAATGTCGT 59.845 37.500 0.00 0.00 0.00 4.34
99 102 4.657055 TGCAAATCGTCCAAATAATGTCG 58.343 39.130 0.00 0.00 0.00 4.35
100 103 4.500477 GCTGCAAATCGTCCAAATAATGTC 59.500 41.667 0.00 0.00 0.00 3.06
101 104 4.423732 GCTGCAAATCGTCCAAATAATGT 58.576 39.130 0.00 0.00 0.00 2.71
102 105 3.798337 GGCTGCAAATCGTCCAAATAATG 59.202 43.478 0.50 0.00 0.00 1.90
103 106 3.489059 CGGCTGCAAATCGTCCAAATAAT 60.489 43.478 0.50 0.00 0.00 1.28
104 107 2.159448 CGGCTGCAAATCGTCCAAATAA 60.159 45.455 0.50 0.00 0.00 1.40
105 108 1.400142 CGGCTGCAAATCGTCCAAATA 59.600 47.619 0.50 0.00 0.00 1.40
106 109 0.171007 CGGCTGCAAATCGTCCAAAT 59.829 50.000 0.50 0.00 0.00 2.32
107 110 0.886938 TCGGCTGCAAATCGTCCAAA 60.887 50.000 0.50 0.00 0.00 3.28
108 111 1.302112 TCGGCTGCAAATCGTCCAA 60.302 52.632 0.50 0.00 0.00 3.53
109 112 2.032634 GTCGGCTGCAAATCGTCCA 61.033 57.895 0.50 0.00 0.00 4.02
110 113 2.785258 GTCGGCTGCAAATCGTCC 59.215 61.111 0.50 0.00 0.00 4.79
111 114 1.421410 ATCGTCGGCTGCAAATCGTC 61.421 55.000 0.50 0.00 0.00 4.20
112 115 1.019278 AATCGTCGGCTGCAAATCGT 61.019 50.000 0.50 0.00 0.00 3.73
113 116 0.587242 CAATCGTCGGCTGCAAATCG 60.587 55.000 0.50 0.74 0.00 3.34
114 117 0.726827 TCAATCGTCGGCTGCAAATC 59.273 50.000 0.50 0.00 0.00 2.17
115 118 1.164411 TTCAATCGTCGGCTGCAAAT 58.836 45.000 0.50 0.00 0.00 2.32
116 119 1.130373 GATTCAATCGTCGGCTGCAAA 59.870 47.619 0.50 0.00 0.00 3.68
117 120 0.726827 GATTCAATCGTCGGCTGCAA 59.273 50.000 0.50 0.00 0.00 4.08
118 121 1.089481 GGATTCAATCGTCGGCTGCA 61.089 55.000 0.50 0.00 0.00 4.41
119 122 1.089481 TGGATTCAATCGTCGGCTGC 61.089 55.000 0.00 0.00 0.00 5.25
120 123 0.933097 CTGGATTCAATCGTCGGCTG 59.067 55.000 0.00 0.00 0.00 4.85
121 124 0.811616 GCTGGATTCAATCGTCGGCT 60.812 55.000 1.29 0.00 0.00 5.52
122 125 1.643832 GCTGGATTCAATCGTCGGC 59.356 57.895 0.00 0.00 0.00 5.54
123 126 1.490693 CGGCTGGATTCAATCGTCGG 61.491 60.000 0.00 0.00 0.00 4.79
124 127 0.806102 ACGGCTGGATTCAATCGTCG 60.806 55.000 0.00 0.00 29.95 5.12
125 128 0.652592 CACGGCTGGATTCAATCGTC 59.347 55.000 0.00 0.00 32.26 4.20
126 129 1.369091 GCACGGCTGGATTCAATCGT 61.369 55.000 0.00 0.00 33.91 3.73
127 130 1.353103 GCACGGCTGGATTCAATCG 59.647 57.895 0.00 0.00 0.00 3.34
128 131 0.810648 TTGCACGGCTGGATTCAATC 59.189 50.000 0.00 0.00 0.00 2.67
129 132 1.406539 GATTGCACGGCTGGATTCAAT 59.593 47.619 0.00 0.60 0.00 2.57
130 133 0.810648 GATTGCACGGCTGGATTCAA 59.189 50.000 0.00 0.00 0.00 2.69
131 134 0.035152 AGATTGCACGGCTGGATTCA 60.035 50.000 0.00 0.00 0.00 2.57
132 135 1.098050 AAGATTGCACGGCTGGATTC 58.902 50.000 0.00 0.00 0.00 2.52
133 136 0.813184 CAAGATTGCACGGCTGGATT 59.187 50.000 0.00 0.00 0.00 3.01
134 137 0.322816 ACAAGATTGCACGGCTGGAT 60.323 50.000 0.00 0.00 0.00 3.41
135 138 0.537143 AACAAGATTGCACGGCTGGA 60.537 50.000 0.00 0.00 0.00 3.86
136 139 0.109597 GAACAAGATTGCACGGCTGG 60.110 55.000 0.00 0.00 0.00 4.85
137 140 0.592637 TGAACAAGATTGCACGGCTG 59.407 50.000 0.00 0.00 0.00 4.85
138 141 0.593128 GTGAACAAGATTGCACGGCT 59.407 50.000 0.00 0.00 0.00 5.52
139 142 0.310543 TGTGAACAAGATTGCACGGC 59.689 50.000 0.00 0.00 34.12 5.68
140 143 1.664016 GCTGTGAACAAGATTGCACGG 60.664 52.381 0.00 0.00 39.88 4.94
141 144 1.002576 TGCTGTGAACAAGATTGCACG 60.003 47.619 0.00 0.00 34.12 5.34
142 145 2.291465 TCTGCTGTGAACAAGATTGCAC 59.709 45.455 0.00 0.00 0.00 4.57
143 146 2.551032 CTCTGCTGTGAACAAGATTGCA 59.449 45.455 0.00 0.00 0.00 4.08
144 147 2.667724 GCTCTGCTGTGAACAAGATTGC 60.668 50.000 0.00 0.00 0.00 3.56
145 148 2.551032 TGCTCTGCTGTGAACAAGATTG 59.449 45.455 0.00 0.00 0.00 2.67
146 149 2.854963 TGCTCTGCTGTGAACAAGATT 58.145 42.857 0.00 0.00 0.00 2.40
147 150 2.551459 GTTGCTCTGCTGTGAACAAGAT 59.449 45.455 0.00 0.00 0.00 2.40
148 151 1.942657 GTTGCTCTGCTGTGAACAAGA 59.057 47.619 0.00 0.00 0.00 3.02
149 152 1.333524 CGTTGCTCTGCTGTGAACAAG 60.334 52.381 0.00 0.00 0.00 3.16
150 153 0.657312 CGTTGCTCTGCTGTGAACAA 59.343 50.000 0.00 0.00 0.00 2.83
151 154 1.159713 CCGTTGCTCTGCTGTGAACA 61.160 55.000 0.00 0.00 0.00 3.18
152 155 1.571460 CCGTTGCTCTGCTGTGAAC 59.429 57.895 0.00 0.00 0.00 3.18
153 156 2.253758 GCCGTTGCTCTGCTGTGAA 61.254 57.895 0.00 0.00 33.53 3.18
154 157 2.666190 GCCGTTGCTCTGCTGTGA 60.666 61.111 0.00 0.00 33.53 3.58
155 158 3.730761 GGCCGTTGCTCTGCTGTG 61.731 66.667 0.00 0.00 37.74 3.66
162 165 4.778143 ATCCACCGGCCGTTGCTC 62.778 66.667 26.12 0.00 37.74 4.26
163 166 4.344865 AATCCACCGGCCGTTGCT 62.345 61.111 26.12 7.33 37.74 3.91
164 167 3.810896 GAATCCACCGGCCGTTGC 61.811 66.667 26.12 2.94 0.00 4.17
165 168 1.241315 AAAGAATCCACCGGCCGTTG 61.241 55.000 26.12 21.55 0.00 4.10
166 169 0.325602 TAAAGAATCCACCGGCCGTT 59.674 50.000 26.12 6.99 0.00 4.44
167 170 0.325602 TTAAAGAATCCACCGGCCGT 59.674 50.000 26.12 9.63 0.00 5.68
168 171 1.675552 ATTAAAGAATCCACCGGCCG 58.324 50.000 21.04 21.04 0.00 6.13
169 172 2.758423 ACAATTAAAGAATCCACCGGCC 59.242 45.455 0.00 0.00 0.00 6.13
170 173 3.769536 CACAATTAAAGAATCCACCGGC 58.230 45.455 0.00 0.00 0.00 6.13
171 174 3.192422 TGCACAATTAAAGAATCCACCGG 59.808 43.478 0.00 0.00 0.00 5.28
172 175 4.165779 GTGCACAATTAAAGAATCCACCG 58.834 43.478 13.17 0.00 0.00 4.94
173 176 5.048083 TCTGTGCACAATTAAAGAATCCACC 60.048 40.000 21.98 0.00 0.00 4.61
174 177 6.012658 TCTGTGCACAATTAAAGAATCCAC 57.987 37.500 21.98 0.00 0.00 4.02
175 178 6.403527 CGATCTGTGCACAATTAAAGAATCCA 60.404 38.462 21.98 0.00 0.00 3.41
176 179 5.967674 CGATCTGTGCACAATTAAAGAATCC 59.032 40.000 21.98 6.46 0.00 3.01
177 180 6.546395 ACGATCTGTGCACAATTAAAGAATC 58.454 36.000 21.98 11.60 0.00 2.52
178 181 6.403636 GGACGATCTGTGCACAATTAAAGAAT 60.404 38.462 21.98 3.81 39.04 2.40
179 182 5.106712 GGACGATCTGTGCACAATTAAAGAA 60.107 40.000 21.98 0.00 39.04 2.52
180 183 4.391830 GGACGATCTGTGCACAATTAAAGA 59.608 41.667 21.98 13.65 39.04 2.52
181 184 4.154015 TGGACGATCTGTGCACAATTAAAG 59.846 41.667 21.98 8.13 44.74 1.85
182 185 4.068599 TGGACGATCTGTGCACAATTAAA 58.931 39.130 21.98 4.56 44.74 1.52
183 186 3.669536 TGGACGATCTGTGCACAATTAA 58.330 40.909 21.98 7.16 44.74 1.40
184 187 3.326836 TGGACGATCTGTGCACAATTA 57.673 42.857 21.98 9.79 44.74 1.40
185 188 2.183478 TGGACGATCTGTGCACAATT 57.817 45.000 21.98 11.04 44.74 2.32
186 189 3.933879 TGGACGATCTGTGCACAAT 57.066 47.368 21.98 16.40 44.74 2.71
191 194 3.626028 AAACTTTTGGACGATCTGTGC 57.374 42.857 0.00 0.00 39.78 4.57
192 195 5.120208 ACGATAAACTTTTGGACGATCTGTG 59.880 40.000 0.00 0.00 0.00 3.66
193 196 5.120208 CACGATAAACTTTTGGACGATCTGT 59.880 40.000 0.00 0.00 0.00 3.41
194 197 5.120208 ACACGATAAACTTTTGGACGATCTG 59.880 40.000 0.00 0.00 0.00 2.90
195 198 5.120208 CACACGATAAACTTTTGGACGATCT 59.880 40.000 0.00 0.00 0.00 2.75
196 199 5.107220 ACACACGATAAACTTTTGGACGATC 60.107 40.000 0.00 0.00 0.00 3.69
197 200 4.753107 ACACACGATAAACTTTTGGACGAT 59.247 37.500 0.00 0.00 0.00 3.73
198 201 4.025563 CACACACGATAAACTTTTGGACGA 60.026 41.667 0.00 0.00 0.00 4.20
199 202 4.025563 TCACACACGATAAACTTTTGGACG 60.026 41.667 0.00 0.00 0.00 4.79
200 203 5.412526 TCACACACGATAAACTTTTGGAC 57.587 39.130 0.00 0.00 0.00 4.02
201 204 5.504994 GCTTCACACACGATAAACTTTTGGA 60.505 40.000 0.00 0.00 0.00 3.53
202 205 4.675114 GCTTCACACACGATAAACTTTTGG 59.325 41.667 0.00 0.00 0.00 3.28
203 206 5.270083 TGCTTCACACACGATAAACTTTTG 58.730 37.500 0.00 0.00 0.00 2.44
204 207 5.493133 TGCTTCACACACGATAAACTTTT 57.507 34.783 0.00 0.00 0.00 2.27
205 208 5.493133 TTGCTTCACACACGATAAACTTT 57.507 34.783 0.00 0.00 0.00 2.66
206 209 5.689383 ATTGCTTCACACACGATAAACTT 57.311 34.783 0.00 0.00 0.00 2.66
207 210 5.689383 AATTGCTTCACACACGATAAACT 57.311 34.783 0.00 0.00 0.00 2.66
208 211 5.058008 CGAAATTGCTTCACACACGATAAAC 59.942 40.000 0.00 0.00 33.17 2.01
209 212 5.143660 CGAAATTGCTTCACACACGATAAA 58.856 37.500 0.00 0.00 33.17 1.40
210 213 4.212425 ACGAAATTGCTTCACACACGATAA 59.788 37.500 0.00 0.00 33.17 1.75
211 214 3.743911 ACGAAATTGCTTCACACACGATA 59.256 39.130 0.00 0.00 33.17 2.92
212 215 2.548057 ACGAAATTGCTTCACACACGAT 59.452 40.909 0.00 0.00 33.17 3.73
213 216 1.937223 ACGAAATTGCTTCACACACGA 59.063 42.857 0.00 0.00 33.17 4.35
214 217 2.383298 ACGAAATTGCTTCACACACG 57.617 45.000 0.00 0.00 33.17 4.49
215 218 5.448926 AAAAACGAAATTGCTTCACACAC 57.551 34.783 0.00 0.00 33.17 3.82
253 256 8.890718 CCATATGAAATGAGATGACATGTATCC 58.109 37.037 3.65 0.00 0.00 2.59
288 291 8.621073 ACTAAAACCTGGTTTATAGGAAAGGAT 58.379 33.333 24.08 7.48 38.71 3.24
299 302 9.871175 AGGAAAAGATTACTAAAACCTGGTTTA 57.129 29.630 24.08 9.53 34.43 2.01
300 303 8.777578 AGGAAAAGATTACTAAAACCTGGTTT 57.222 30.769 18.84 18.84 37.34 3.27
314 317 9.695155 CCTCCTTTGGTTTATAGGAAAAGATTA 57.305 33.333 0.00 0.00 37.61 1.75
315 318 7.124298 GCCTCCTTTGGTTTATAGGAAAAGATT 59.876 37.037 0.00 0.00 37.61 2.40
316 319 6.607600 GCCTCCTTTGGTTTATAGGAAAAGAT 59.392 38.462 0.00 0.00 37.61 2.40
319 322 5.020795 GGCCTCCTTTGGTTTATAGGAAAA 58.979 41.667 0.00 0.00 37.61 2.29
350 353 8.917415 AAGAAAACTGTGAAGAAATTCAGAAC 57.083 30.769 0.00 0.00 0.00 3.01
393 396 7.817418 TTTAGACAAAACTTAGCAAGATGGT 57.183 32.000 3.37 0.00 0.00 3.55
472 475 1.068541 GTGGCCGTGAATTTGAAGGTC 60.069 52.381 0.00 0.00 0.00 3.85
511 514 5.405571 TCTCGATGTCTACTTTTTCTGCAAC 59.594 40.000 0.00 0.00 0.00 4.17
610 749 0.392461 GGACAGTATTTGGCAGCCGA 60.392 55.000 7.03 0.62 36.08 5.54
622 761 4.678256 AGAAGGAGACATTCAGGACAGTA 58.322 43.478 0.00 0.00 0.00 2.74
846 3780 7.023575 AGCTCGACATGACAACAAAAATTATC 58.976 34.615 0.00 0.00 0.00 1.75
1034 3998 3.445857 GGAGTATGTCTACGGCTGTTTC 58.554 50.000 1.99 0.00 32.82 2.78
1141 4106 1.003759 CGAACCTATGGACGACTCTCG 60.004 57.143 0.00 0.00 46.93 4.04
1229 4194 2.417558 AAAGGGAGCTTCTTGGCGCT 62.418 55.000 7.64 0.00 39.61 5.92
1304 4269 3.829044 CCGCCGGTGATGGTCGTA 61.829 66.667 18.79 0.00 0.00 3.43
1334 4299 2.542907 CGTTGTTGGCTTGCTCGGT 61.543 57.895 0.00 0.00 0.00 4.69
1535 4781 1.223211 CGGCCACCACATCCACATA 59.777 57.895 2.24 0.00 0.00 2.29
1591 4837 1.769465 AGCATCATCATCAGGCTCAGT 59.231 47.619 0.00 0.00 0.00 3.41
1684 4930 4.323417 TGTAATTCTCGCATCCAAACTGT 58.677 39.130 0.00 0.00 0.00 3.55
1705 4951 6.839033 AGATTGATTTATGCACGCATCTATG 58.161 36.000 7.99 0.00 37.82 2.23
1793 5039 4.140536 AGGGAAAAGAAGCAAGTGAGAAG 58.859 43.478 0.00 0.00 0.00 2.85
1889 5135 9.807649 AAATGTTTTCTAATCTATGAACATGCC 57.192 29.630 0.00 0.00 37.66 4.40
1905 5210 6.265422 AGGTTCTGAAATCCGAAATGTTTTCT 59.735 34.615 0.00 0.00 0.00 2.52
1917 5222 8.297426 CCAAACTAACTTAAGGTTCTGAAATCC 58.703 37.037 7.53 0.00 39.17 3.01
1948 5253 6.830873 AGAAAGGGTGAATCATCTTTTCAG 57.169 37.500 25.85 0.00 33.95 3.02
1965 5270 5.395682 TGATGAATGCCAAAGAAGAAAGG 57.604 39.130 0.00 0.00 0.00 3.11
2113 5418 5.819825 AGTTCAAACTGACTTCTTTGTCC 57.180 39.130 0.00 0.00 37.98 4.02
2368 5674 2.489619 CCCCACACATATCCATTCCTGG 60.490 54.545 0.00 0.00 44.64 4.45
2379 5685 2.666207 GTGCGTCCCCCACACATA 59.334 61.111 0.00 0.00 34.43 2.29
2553 5862 5.974108 TGTCATGACTAACTACCTTTAGCC 58.026 41.667 25.55 0.00 33.02 3.93
2557 5866 6.919775 ACTCTGTCATGACTAACTACCTTT 57.080 37.500 25.55 0.00 0.00 3.11
2584 5996 5.872617 TGGTATTACTCTCGTTGGTGAATTG 59.127 40.000 0.00 0.00 0.00 2.32
2631 6043 3.009723 GCTTAGCATTTGTGGCTAGTCA 58.990 45.455 0.00 0.00 44.03 3.41
2682 6094 4.517285 TGATTCCAGTCAGCAGTTAATCC 58.483 43.478 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.