Multiple sequence alignment - TraesCS5B01G120300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G120300 chr5B 100.000 5251 0 0 1 5251 213247756 213253006 0.000000e+00 9697.0
1 TraesCS5B01G120300 chr5B 92.857 266 19 0 1583 1848 213249254 213249519 2.290000e-103 387.0
2 TraesCS5B01G120300 chr5B 92.857 266 19 0 1499 1764 213249338 213249603 2.290000e-103 387.0
3 TraesCS5B01G120300 chr5B 85.294 170 18 7 83 248 478607380 478607214 9.040000e-38 169.0
4 TraesCS5B01G120300 chr5D 93.617 5045 143 64 262 5251 197154822 197149902 0.000000e+00 7367.0
5 TraesCS5B01G120300 chr5D 93.985 266 16 0 1499 1764 197153492 197153227 2.280000e-108 403.0
6 TraesCS5B01G120300 chr5D 93.609 266 17 0 1583 1848 197153576 197153311 1.060000e-106 398.0
7 TraesCS5B01G120300 chr5D 92.896 183 13 0 1667 1849 197153576 197153394 3.120000e-67 267.0
8 TraesCS5B01G120300 chr5A 92.658 3773 154 43 1500 5251 227922601 227926271 0.000000e+00 5319.0
9 TraesCS5B01G120300 chr5A 92.212 1605 87 10 262 1848 227921278 227922862 0.000000e+00 2237.0
10 TraesCS5B01G120300 chr5A 90.943 265 21 1 1583 1847 227922516 227922777 2.330000e-93 353.0
11 TraesCS5B01G120300 chr5A 92.641 231 17 0 1499 1729 227922681 227922911 3.030000e-87 333.0
12 TraesCS5B01G120300 chr5A 92.308 169 9 2 90 258 636934388 636934224 2.440000e-58 237.0
13 TraesCS5B01G120300 chr5A 91.837 147 12 0 1499 1645 227922765 227922911 6.890000e-49 206.0
14 TraesCS5B01G120300 chr4A 79.243 925 173 14 2460 3376 522294095 522295008 1.240000e-175 627.0
15 TraesCS5B01G120300 chr4D 79.135 925 174 14 2460 3376 70119063 70119976 5.780000e-174 621.0
16 TraesCS5B01G120300 chr4D 97.468 79 1 1 1 78 75795369 75795291 3.300000e-27 134.0
17 TraesCS5B01G120300 chr4B 78.811 925 177 14 2460 3376 103772923 103773836 5.820000e-169 604.0
18 TraesCS5B01G120300 chr7A 78.817 524 103 5 2674 3196 558756224 558755708 3.890000e-91 346.0
19 TraesCS5B01G120300 chr7D 78.517 526 101 8 2674 3196 492221175 492220659 8.430000e-88 335.0
20 TraesCS5B01G120300 chr7B 78.244 524 106 5 2674 3196 521617128 521616612 3.920000e-86 329.0
21 TraesCS5B01G120300 chr2B 85.030 167 19 6 80 242 757359407 757359571 1.170000e-36 165.0
22 TraesCS5B01G120300 chr6D 97.436 78 2 0 1 78 39090426 39090503 3.300000e-27 134.0
23 TraesCS5B01G120300 chr3B 97.436 78 2 0 1 78 666931250 666931327 3.300000e-27 134.0
24 TraesCS5B01G120300 chr3B 82.099 162 21 8 72 229 144498292 144498135 1.190000e-26 132.0
25 TraesCS5B01G120300 chr2D 97.436 78 2 0 1 78 116829647 116829570 3.300000e-27 134.0
26 TraesCS5B01G120300 chr2A 97.468 79 1 1 1 78 102679678 102679600 3.300000e-27 134.0
27 TraesCS5B01G120300 chr1A 97.436 78 2 0 1 78 533771012 533771089 3.300000e-27 134.0
28 TraesCS5B01G120300 chr1D 94.253 87 3 2 1 86 227729951 227729866 1.190000e-26 132.0
29 TraesCS5B01G120300 chr1D 79.755 163 31 2 2870 3031 285442568 285442729 3.320000e-22 117.0
30 TraesCS5B01G120300 chr3A 95.122 82 4 0 1 82 621628437 621628518 4.270000e-26 130.0
31 TraesCS5B01G120300 chr3A 97.959 49 1 0 83 131 495498596 495498548 9.370000e-13 86.1
32 TraesCS5B01G120300 chrUn 94.118 85 3 2 1 84 8839752 8839669 1.530000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G120300 chr5B 213247756 213253006 5250 False 3490.333333 9697 95.23800 1 5251 3 chr5B.!!$F1 5250
1 TraesCS5B01G120300 chr5D 197149902 197154822 4920 True 2108.750000 7367 93.52675 262 5251 4 chr5D.!!$R1 4989
2 TraesCS5B01G120300 chr5A 227921278 227926271 4993 False 1689.600000 5319 92.05820 262 5251 5 chr5A.!!$F1 4989
3 TraesCS5B01G120300 chr4A 522294095 522295008 913 False 627.000000 627 79.24300 2460 3376 1 chr4A.!!$F1 916
4 TraesCS5B01G120300 chr4D 70119063 70119976 913 False 621.000000 621 79.13500 2460 3376 1 chr4D.!!$F1 916
5 TraesCS5B01G120300 chr4B 103772923 103773836 913 False 604.000000 604 78.81100 2460 3376 1 chr4B.!!$F1 916
6 TraesCS5B01G120300 chr7A 558755708 558756224 516 True 346.000000 346 78.81700 2674 3196 1 chr7A.!!$R1 522
7 TraesCS5B01G120300 chr7D 492220659 492221175 516 True 335.000000 335 78.51700 2674 3196 1 chr7D.!!$R1 522
8 TraesCS5B01G120300 chr7B 521616612 521617128 516 True 329.000000 329 78.24400 2674 3196 1 chr7B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.040958 CAGAAAGCGCGCAAGTCTTT 60.041 50.0 35.10 23.83 42.06 2.52 F
555 557 0.177604 CTTGGCTCCTCCTGCTACTG 59.822 60.0 0.00 0.00 35.26 2.74 F
2226 2329 0.322456 CCATCACCCAAGGCGAAGAA 60.322 55.0 0.00 0.00 0.00 2.52 F
2921 3030 0.318699 TTCGACAAGGACGTGCTGAG 60.319 55.0 11.44 9.37 0.00 3.35 F
4098 4214 0.399833 GCCAGAGGGGAAGATGATCC 59.600 60.0 0.00 0.00 40.01 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2313 0.321671 CTCTTCTTCGCCTTGGGTGA 59.678 55.000 0.0 0.0 40.77 4.02 R
2466 2572 0.746204 TCGTGTTGCACAGCTTCCAA 60.746 50.000 0.0 0.0 33.40 3.53 R
3394 3506 0.463654 TTCAACAAGAGCCAGTGCGT 60.464 50.000 0.0 0.0 44.33 5.24 R
4226 4342 0.179029 CGAGTGGTTGGACTTGGGTT 60.179 55.000 0.0 0.0 0.00 4.11 R
5204 5372 3.823304 ACCTTTGGCACTTTCAGAATCTC 59.177 43.478 0.0 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.827586 TTCGTTAATTAACTGGGCAATTCT 57.172 33.333 22.57 0.00 34.12 2.40
25 26 6.431198 TCGTTAATTAACTGGGCAATTCTC 57.569 37.500 22.57 0.00 34.12 2.87
26 27 6.177610 TCGTTAATTAACTGGGCAATTCTCT 58.822 36.000 22.57 0.00 34.12 3.10
27 28 6.657541 TCGTTAATTAACTGGGCAATTCTCTT 59.342 34.615 22.57 0.00 34.12 2.85
28 29 6.967199 CGTTAATTAACTGGGCAATTCTCTTC 59.033 38.462 22.57 0.00 34.12 2.87
29 30 7.148239 CGTTAATTAACTGGGCAATTCTCTTCT 60.148 37.037 22.57 0.00 34.12 2.85
30 31 8.523658 GTTAATTAACTGGGCAATTCTCTTCTT 58.476 33.333 19.07 0.00 33.52 2.52
31 32 6.765915 ATTAACTGGGCAATTCTCTTCTTC 57.234 37.500 0.00 0.00 0.00 2.87
32 33 4.379302 AACTGGGCAATTCTCTTCTTCT 57.621 40.909 0.00 0.00 0.00 2.85
33 34 4.379302 ACTGGGCAATTCTCTTCTTCTT 57.621 40.909 0.00 0.00 0.00 2.52
34 35 5.505181 ACTGGGCAATTCTCTTCTTCTTA 57.495 39.130 0.00 0.00 0.00 2.10
35 36 5.880901 ACTGGGCAATTCTCTTCTTCTTAA 58.119 37.500 0.00 0.00 0.00 1.85
36 37 6.488715 ACTGGGCAATTCTCTTCTTCTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
37 38 6.950619 ACTGGGCAATTCTCTTCTTCTTAATT 59.049 34.615 0.00 0.00 0.00 1.40
38 39 8.109634 ACTGGGCAATTCTCTTCTTCTTAATTA 58.890 33.333 0.00 0.00 0.00 1.40
39 40 8.877864 TGGGCAATTCTCTTCTTCTTAATTAA 57.122 30.769 0.00 0.00 0.00 1.40
40 41 9.479549 TGGGCAATTCTCTTCTTCTTAATTAAT 57.520 29.630 0.00 0.00 0.00 1.40
41 42 9.958234 GGGCAATTCTCTTCTTCTTAATTAATC 57.042 33.333 0.00 0.00 0.00 1.75
42 43 9.657121 GGCAATTCTCTTCTTCTTAATTAATCG 57.343 33.333 0.00 0.00 0.00 3.34
48 49 9.973450 TCTCTTCTTCTTAATTAATCGATGAGG 57.027 33.333 19.96 13.97 0.00 3.86
49 50 8.594881 TCTTCTTCTTAATTAATCGATGAGGC 57.405 34.615 0.00 0.00 0.00 4.70
50 51 8.204160 TCTTCTTCTTAATTAATCGATGAGGCA 58.796 33.333 0.00 0.00 0.00 4.75
51 52 8.731275 TTCTTCTTAATTAATCGATGAGGCAA 57.269 30.769 0.00 0.00 0.00 4.52
52 53 8.731275 TCTTCTTAATTAATCGATGAGGCAAA 57.269 30.769 0.00 0.00 0.00 3.68
53 54 9.342308 TCTTCTTAATTAATCGATGAGGCAAAT 57.658 29.630 0.00 0.00 0.00 2.32
60 61 7.928908 TTAATCGATGAGGCAAATATTTTGC 57.071 32.000 14.88 14.88 44.22 3.68
70 71 4.956793 GCAAATATTTTGCCTCCGTTTTG 58.043 39.130 12.74 0.00 39.38 2.44
71 72 4.688413 GCAAATATTTTGCCTCCGTTTTGA 59.312 37.500 12.74 0.00 39.38 2.69
72 73 5.178438 GCAAATATTTTGCCTCCGTTTTGAA 59.822 36.000 12.74 0.00 39.38 2.69
73 74 6.293135 GCAAATATTTTGCCTCCGTTTTGAAA 60.293 34.615 12.74 0.00 39.38 2.69
74 75 7.634522 CAAATATTTTGCCTCCGTTTTGAAAA 58.365 30.769 0.00 0.00 0.00 2.29
75 76 7.793927 AATATTTTGCCTCCGTTTTGAAAAA 57.206 28.000 0.00 0.00 0.00 1.94
99 100 9.781633 AAAAATGATTTCAAATTGTGGATGAGA 57.218 25.926 0.00 0.00 0.00 3.27
100 101 8.997621 AAATGATTTCAAATTGTGGATGAGAG 57.002 30.769 0.00 0.00 0.00 3.20
101 102 5.957798 TGATTTCAAATTGTGGATGAGAGC 58.042 37.500 0.00 0.00 0.00 4.09
102 103 5.713389 TGATTTCAAATTGTGGATGAGAGCT 59.287 36.000 0.00 0.00 0.00 4.09
103 104 6.885918 TGATTTCAAATTGTGGATGAGAGCTA 59.114 34.615 0.00 0.00 0.00 3.32
104 105 7.394077 TGATTTCAAATTGTGGATGAGAGCTAA 59.606 33.333 0.00 0.00 0.00 3.09
105 106 6.748333 TTCAAATTGTGGATGAGAGCTAAG 57.252 37.500 0.00 0.00 0.00 2.18
106 107 6.053632 TCAAATTGTGGATGAGAGCTAAGA 57.946 37.500 0.00 0.00 0.00 2.10
107 108 6.656902 TCAAATTGTGGATGAGAGCTAAGAT 58.343 36.000 0.00 0.00 0.00 2.40
108 109 7.795047 TCAAATTGTGGATGAGAGCTAAGATA 58.205 34.615 0.00 0.00 0.00 1.98
109 110 7.930325 TCAAATTGTGGATGAGAGCTAAGATAG 59.070 37.037 0.00 0.00 0.00 2.08
110 111 5.798125 TTGTGGATGAGAGCTAAGATAGG 57.202 43.478 0.00 0.00 0.00 2.57
111 112 4.809193 TGTGGATGAGAGCTAAGATAGGT 58.191 43.478 0.00 0.00 39.61 3.08
112 113 4.586421 TGTGGATGAGAGCTAAGATAGGTG 59.414 45.833 0.00 0.00 36.51 4.00
113 114 4.021544 GTGGATGAGAGCTAAGATAGGTGG 60.022 50.000 0.00 0.00 36.51 4.61
114 115 3.513515 GGATGAGAGCTAAGATAGGTGGG 59.486 52.174 0.00 0.00 36.51 4.61
115 116 3.973472 TGAGAGCTAAGATAGGTGGGA 57.027 47.619 0.00 0.00 36.51 4.37
116 117 4.477536 TGAGAGCTAAGATAGGTGGGAT 57.522 45.455 0.00 0.00 36.51 3.85
117 118 5.600669 TGAGAGCTAAGATAGGTGGGATA 57.399 43.478 0.00 0.00 36.51 2.59
118 119 5.575157 TGAGAGCTAAGATAGGTGGGATAG 58.425 45.833 0.00 0.00 36.51 2.08
119 120 4.349365 AGAGCTAAGATAGGTGGGATAGC 58.651 47.826 0.00 0.00 36.51 2.97
120 121 3.093057 AGCTAAGATAGGTGGGATAGCG 58.907 50.000 0.00 0.00 40.40 4.26
121 122 3.090037 GCTAAGATAGGTGGGATAGCGA 58.910 50.000 0.00 0.00 0.00 4.93
122 123 3.129638 GCTAAGATAGGTGGGATAGCGAG 59.870 52.174 0.00 0.00 0.00 5.03
123 124 3.527507 AAGATAGGTGGGATAGCGAGA 57.472 47.619 0.00 0.00 0.00 4.04
124 125 3.080300 AGATAGGTGGGATAGCGAGAG 57.920 52.381 0.00 0.00 0.00 3.20
125 126 2.645297 AGATAGGTGGGATAGCGAGAGA 59.355 50.000 0.00 0.00 0.00 3.10
126 127 3.268334 AGATAGGTGGGATAGCGAGAGAT 59.732 47.826 0.00 0.00 0.00 2.75
127 128 1.626686 AGGTGGGATAGCGAGAGATG 58.373 55.000 0.00 0.00 0.00 2.90
128 129 1.133325 AGGTGGGATAGCGAGAGATGT 60.133 52.381 0.00 0.00 0.00 3.06
129 130 2.108425 AGGTGGGATAGCGAGAGATGTA 59.892 50.000 0.00 0.00 0.00 2.29
130 131 2.891580 GGTGGGATAGCGAGAGATGTAA 59.108 50.000 0.00 0.00 0.00 2.41
131 132 3.305471 GGTGGGATAGCGAGAGATGTAAC 60.305 52.174 0.00 0.00 0.00 2.50
132 133 3.570550 GTGGGATAGCGAGAGATGTAACT 59.429 47.826 0.00 0.00 0.00 2.24
133 134 4.038162 GTGGGATAGCGAGAGATGTAACTT 59.962 45.833 0.00 0.00 0.00 2.66
134 135 5.241064 GTGGGATAGCGAGAGATGTAACTTA 59.759 44.000 0.00 0.00 0.00 2.24
135 136 5.831525 TGGGATAGCGAGAGATGTAACTTAA 59.168 40.000 0.00 0.00 0.00 1.85
136 137 6.016192 TGGGATAGCGAGAGATGTAACTTAAG 60.016 42.308 0.00 0.00 0.00 1.85
137 138 6.016108 GGGATAGCGAGAGATGTAACTTAAGT 60.016 42.308 1.12 1.12 0.00 2.24
138 139 7.427214 GGATAGCGAGAGATGTAACTTAAGTT 58.573 38.462 23.58 23.58 41.73 2.66
139 140 7.592164 GGATAGCGAGAGATGTAACTTAAGTTC 59.408 40.741 23.76 15.39 39.31 3.01
140 141 6.518208 AGCGAGAGATGTAACTTAAGTTCT 57.482 37.500 23.76 14.97 39.31 3.01
141 142 6.326375 AGCGAGAGATGTAACTTAAGTTCTG 58.674 40.000 23.76 9.90 39.31 3.02
142 143 5.004916 GCGAGAGATGTAACTTAAGTTCTGC 59.995 44.000 23.76 15.24 39.31 4.26
143 144 6.326375 CGAGAGATGTAACTTAAGTTCTGCT 58.674 40.000 23.76 16.09 39.31 4.24
144 145 6.809196 CGAGAGATGTAACTTAAGTTCTGCTT 59.191 38.462 23.76 13.07 39.31 3.91
145 146 7.008810 CGAGAGATGTAACTTAAGTTCTGCTTC 59.991 40.741 23.76 19.18 39.31 3.86
146 147 7.902087 AGAGATGTAACTTAAGTTCTGCTTCT 58.098 34.615 23.76 22.47 39.31 2.85
147 148 8.032451 AGAGATGTAACTTAAGTTCTGCTTCTC 58.968 37.037 28.40 28.40 39.31 2.87
148 149 7.902087 AGATGTAACTTAAGTTCTGCTTCTCT 58.098 34.615 23.76 13.60 39.31 3.10
149 150 7.816995 AGATGTAACTTAAGTTCTGCTTCTCTG 59.183 37.037 23.76 0.00 39.31 3.35
150 151 6.817184 TGTAACTTAAGTTCTGCTTCTCTGT 58.183 36.000 23.76 0.00 39.31 3.41
151 152 6.701841 TGTAACTTAAGTTCTGCTTCTCTGTG 59.298 38.462 23.76 0.00 39.31 3.66
152 153 4.636249 ACTTAAGTTCTGCTTCTCTGTGG 58.364 43.478 1.12 0.00 38.57 4.17
153 154 4.101741 ACTTAAGTTCTGCTTCTCTGTGGT 59.898 41.667 1.12 0.00 38.57 4.16
154 155 3.567478 AAGTTCTGCTTCTCTGTGGTT 57.433 42.857 0.00 0.00 30.06 3.67
155 156 2.843701 AGTTCTGCTTCTCTGTGGTTG 58.156 47.619 0.00 0.00 0.00 3.77
156 157 1.265365 GTTCTGCTTCTCTGTGGTTGC 59.735 52.381 0.00 0.00 0.00 4.17
157 158 0.469494 TCTGCTTCTCTGTGGTTGCA 59.531 50.000 0.00 0.00 0.00 4.08
158 159 0.590195 CTGCTTCTCTGTGGTTGCAC 59.410 55.000 0.00 0.00 0.00 4.57
159 160 0.181114 TGCTTCTCTGTGGTTGCACT 59.819 50.000 0.00 0.00 0.00 4.40
160 161 0.590195 GCTTCTCTGTGGTTGCACTG 59.410 55.000 0.00 0.00 0.00 3.66
161 162 1.811558 GCTTCTCTGTGGTTGCACTGA 60.812 52.381 0.00 0.00 0.00 3.41
162 163 1.869767 CTTCTCTGTGGTTGCACTGAC 59.130 52.381 0.00 0.00 0.00 3.51
163 164 1.123077 TCTCTGTGGTTGCACTGACT 58.877 50.000 0.00 0.00 0.00 3.41
164 165 2.316108 TCTCTGTGGTTGCACTGACTA 58.684 47.619 0.00 0.00 0.00 2.59
165 166 2.899900 TCTCTGTGGTTGCACTGACTAT 59.100 45.455 0.00 0.00 0.00 2.12
166 167 3.056536 TCTCTGTGGTTGCACTGACTATC 60.057 47.826 0.00 0.00 0.00 2.08
167 168 2.632512 TCTGTGGTTGCACTGACTATCA 59.367 45.455 0.00 0.00 0.00 2.15
180 181 4.820897 CTGACTATCAGTGCCTTGTAACA 58.179 43.478 0.00 0.00 39.58 2.41
181 182 5.420725 TGACTATCAGTGCCTTGTAACAT 57.579 39.130 0.00 0.00 0.00 2.71
182 183 5.804639 TGACTATCAGTGCCTTGTAACATT 58.195 37.500 0.00 0.00 0.00 2.71
183 184 6.237901 TGACTATCAGTGCCTTGTAACATTT 58.762 36.000 0.00 0.00 0.00 2.32
184 185 7.390823 TGACTATCAGTGCCTTGTAACATTTA 58.609 34.615 0.00 0.00 0.00 1.40
185 186 8.046708 TGACTATCAGTGCCTTGTAACATTTAT 58.953 33.333 0.00 0.00 0.00 1.40
186 187 9.542462 GACTATCAGTGCCTTGTAACATTTATA 57.458 33.333 0.00 0.00 0.00 0.98
187 188 9.899661 ACTATCAGTGCCTTGTAACATTTATAA 57.100 29.630 0.00 0.00 0.00 0.98
190 191 8.630054 TCAGTGCCTTGTAACATTTATAAACT 57.370 30.769 0.00 0.00 0.00 2.66
191 192 8.726988 TCAGTGCCTTGTAACATTTATAAACTC 58.273 33.333 0.00 0.00 0.00 3.01
192 193 8.730680 CAGTGCCTTGTAACATTTATAAACTCT 58.269 33.333 0.00 0.00 0.00 3.24
193 194 9.297037 AGTGCCTTGTAACATTTATAAACTCTT 57.703 29.630 0.00 0.00 0.00 2.85
194 195 9.556030 GTGCCTTGTAACATTTATAAACTCTTC 57.444 33.333 0.00 0.00 0.00 2.87
195 196 9.515226 TGCCTTGTAACATTTATAAACTCTTCT 57.485 29.630 0.00 0.00 0.00 2.85
196 197 9.989869 GCCTTGTAACATTTATAAACTCTTCTC 57.010 33.333 0.00 0.00 0.00 2.87
216 217 9.737427 TCTTCTCTCTTATTAATACAGAAAGCG 57.263 33.333 0.00 0.00 0.00 4.68
217 218 7.932120 TCTCTCTTATTAATACAGAAAGCGC 57.068 36.000 0.00 0.00 0.00 5.92
218 219 6.637254 TCTCTCTTATTAATACAGAAAGCGCG 59.363 38.462 0.00 0.00 0.00 6.86
219 220 5.175126 TCTCTTATTAATACAGAAAGCGCGC 59.825 40.000 26.66 26.66 0.00 6.86
220 221 4.806775 TCTTATTAATACAGAAAGCGCGCA 59.193 37.500 35.10 11.28 0.00 6.09
221 222 5.292345 TCTTATTAATACAGAAAGCGCGCAA 59.708 36.000 35.10 14.94 0.00 4.85
222 223 3.383546 TTAATACAGAAAGCGCGCAAG 57.616 42.857 35.10 19.21 43.44 4.01
223 224 1.156736 AATACAGAAAGCGCGCAAGT 58.843 45.000 35.10 23.67 41.68 3.16
224 225 0.721718 ATACAGAAAGCGCGCAAGTC 59.278 50.000 35.10 25.19 41.68 3.01
225 226 0.319555 TACAGAAAGCGCGCAAGTCT 60.320 50.000 35.10 26.99 41.68 3.24
226 227 1.160329 ACAGAAAGCGCGCAAGTCTT 61.160 50.000 35.10 15.93 41.68 3.01
227 228 0.040958 CAGAAAGCGCGCAAGTCTTT 60.041 50.000 35.10 23.83 42.06 2.52
228 229 0.663153 AGAAAGCGCGCAAGTCTTTT 59.337 45.000 35.10 23.05 40.45 2.27
229 230 0.772341 GAAAGCGCGCAAGTCTTTTG 59.228 50.000 35.10 0.00 40.45 2.44
230 231 1.208642 AAAGCGCGCAAGTCTTTTGC 61.209 50.000 35.10 0.00 38.45 3.68
236 237 2.207177 GCAAGTCTTTTGCGTGTGC 58.793 52.632 0.00 0.00 43.20 4.57
237 238 0.248621 GCAAGTCTTTTGCGTGTGCT 60.249 50.000 0.00 0.00 43.34 4.40
238 239 1.798813 GCAAGTCTTTTGCGTGTGCTT 60.799 47.619 0.00 0.00 43.34 3.91
239 240 1.847999 CAAGTCTTTTGCGTGTGCTTG 59.152 47.619 0.00 0.00 43.34 4.01
240 241 1.378531 AGTCTTTTGCGTGTGCTTGA 58.621 45.000 0.00 0.00 43.34 3.02
241 242 1.742831 AGTCTTTTGCGTGTGCTTGAA 59.257 42.857 0.00 0.00 43.34 2.69
242 243 2.163412 AGTCTTTTGCGTGTGCTTGAAA 59.837 40.909 0.00 0.00 43.34 2.69
243 244 2.920490 GTCTTTTGCGTGTGCTTGAAAA 59.080 40.909 0.00 0.00 43.34 2.29
244 245 3.366422 GTCTTTTGCGTGTGCTTGAAAAA 59.634 39.130 0.00 0.00 43.34 1.94
305 306 8.988064 TTCAGTTAGCTTGCTATATATGCTAC 57.012 34.615 2.99 0.00 36.19 3.58
480 482 1.483415 GCAATGGATGGAGCCACAAAT 59.517 47.619 0.00 0.00 41.56 2.32
481 483 2.093341 GCAATGGATGGAGCCACAAATT 60.093 45.455 0.00 0.00 41.56 1.82
482 484 3.132646 GCAATGGATGGAGCCACAAATTA 59.867 43.478 0.00 0.00 41.56 1.40
483 485 4.382901 GCAATGGATGGAGCCACAAATTAA 60.383 41.667 0.00 0.00 41.56 1.40
542 544 0.535102 CCGTTTCTCCACACTTGGCT 60.535 55.000 0.00 0.00 43.56 4.75
555 557 0.177604 CTTGGCTCCTCCTGCTACTG 59.822 60.000 0.00 0.00 35.26 2.74
581 583 3.403051 TCCCCTCCACCCAATAAAAAGAA 59.597 43.478 0.00 0.00 0.00 2.52
753 772 5.391629 CGCTGGTGCACGTCTATATATCTAA 60.392 44.000 11.45 0.00 39.64 2.10
805 824 3.315521 CTCGCTCGCCGTCGAATG 61.316 66.667 0.00 0.00 44.98 2.67
1281 1300 2.282180 GCCGCCAAGGAGGACAAA 60.282 61.111 13.43 0.00 45.00 2.83
1284 1303 0.955919 CCGCCAAGGAGGACAAAGAC 60.956 60.000 2.29 0.00 45.00 3.01
1285 1304 1.291877 CGCCAAGGAGGACAAAGACG 61.292 60.000 0.00 0.00 41.22 4.18
1286 1305 0.955919 GCCAAGGAGGACAAAGACGG 60.956 60.000 0.00 0.00 41.22 4.79
1330 1349 3.443925 TCGACCAGAGCGCAGAGG 61.444 66.667 11.47 10.59 0.00 3.69
1417 1436 2.809601 CGCCGTCCAAGAACCTCG 60.810 66.667 0.00 0.00 0.00 4.63
1421 1440 0.673644 CCGTCCAAGAACCTCGCATT 60.674 55.000 0.00 0.00 0.00 3.56
1449 1468 3.706373 AGCGGCATGACGGAAGGT 61.706 61.111 24.89 0.00 0.00 3.50
1454 1473 2.272146 CATGACGGAAGGTGGGGG 59.728 66.667 0.00 0.00 0.00 5.40
1512 1531 0.831307 AGAATAACACGGAGGAGGCC 59.169 55.000 0.00 0.00 0.00 5.19
1547 1566 2.761195 CCGAGGATGCGTCGACAGA 61.761 63.158 17.16 0.54 43.12 3.41
1588 1688 2.355363 CCGCCGAACAGAACACGA 60.355 61.111 0.00 0.00 0.00 4.35
1682 1782 1.247567 CAAAACACGGAGGAGGCAAT 58.752 50.000 0.00 0.00 0.00 3.56
1686 1786 1.194781 ACACGGAGGAGGCAATGACT 61.195 55.000 0.00 0.00 0.00 3.41
1767 1867 2.915659 AACACGGAGGAGGCGACA 60.916 61.111 0.00 0.00 0.00 4.35
1782 1882 1.664965 GACAACCGACAAGAGCGCT 60.665 57.895 11.27 11.27 0.00 5.92
1980 2080 5.337571 GGGTGAGACAGAAGATAACATCACA 60.338 44.000 0.00 0.00 38.00 3.58
2157 2260 4.348168 AGGAACCAGACATCTACAACTGTT 59.652 41.667 0.00 0.00 0.00 3.16
2210 2313 4.243270 GTTCTAACGAACAGTAGCACCAT 58.757 43.478 0.00 0.00 46.88 3.55
2226 2329 0.322456 CCATCACCCAAGGCGAAGAA 60.322 55.000 0.00 0.00 0.00 2.52
2394 2497 4.090057 GCGCGGAACAGCAGGAAC 62.090 66.667 8.83 0.00 36.85 3.62
2466 2572 2.971452 GAGGAGGCCTCGAACGTT 59.029 61.111 26.36 0.00 41.08 3.99
2868 2977 4.728102 CGCGTGGCCCTTGACGTA 62.728 66.667 14.06 0.00 37.89 3.57
2921 3030 0.318699 TTCGACAAGGACGTGCTGAG 60.319 55.000 11.44 9.37 0.00 3.35
3325 3434 4.100981 GCTACAGCAAGAGGAGCG 57.899 61.111 0.00 0.00 41.59 5.03
3394 3506 1.476110 GGTACCAATCAAGGCCGCATA 60.476 52.381 7.15 0.00 0.00 3.14
3402 3516 4.838152 AGGCCGCATACGCACTGG 62.838 66.667 0.00 0.00 38.40 4.00
3422 3538 1.730446 GCTCTTGTTGAATCGCTTGCC 60.730 52.381 0.00 0.00 0.00 4.52
3423 3539 1.808945 CTCTTGTTGAATCGCTTGCCT 59.191 47.619 0.00 0.00 0.00 4.75
3424 3540 1.806542 TCTTGTTGAATCGCTTGCCTC 59.193 47.619 0.00 0.00 0.00 4.70
3425 3541 0.881118 TTGTTGAATCGCTTGCCTCC 59.119 50.000 0.00 0.00 0.00 4.30
3426 3542 0.960364 TGTTGAATCGCTTGCCTCCC 60.960 55.000 0.00 0.00 0.00 4.30
3429 3545 1.821332 GAATCGCTTGCCTCCCCTG 60.821 63.158 0.00 0.00 0.00 4.45
3463 3579 1.472082 TGTAATTGCATGGCAGGAACG 59.528 47.619 1.99 0.00 40.61 3.95
3502 3618 4.008933 ACAGAGTGGCCACCGAGC 62.009 66.667 32.29 18.59 0.00 5.03
3751 3867 3.170991 GGTAAGCCCTTTCCTTTCCTT 57.829 47.619 0.00 0.00 29.98 3.36
3781 3897 4.202151 CCTTTCCTTTCCTTTCCTTGTGTG 60.202 45.833 0.00 0.00 0.00 3.82
3782 3898 3.662759 TCCTTTCCTTTCCTTGTGTGT 57.337 42.857 0.00 0.00 0.00 3.72
3783 3899 3.976015 TCCTTTCCTTTCCTTGTGTGTT 58.024 40.909 0.00 0.00 0.00 3.32
3784 3900 3.699038 TCCTTTCCTTTCCTTGTGTGTTG 59.301 43.478 0.00 0.00 0.00 3.33
3785 3901 3.699038 CCTTTCCTTTCCTTGTGTGTTGA 59.301 43.478 0.00 0.00 0.00 3.18
3786 3902 4.159506 CCTTTCCTTTCCTTGTGTGTTGAA 59.840 41.667 0.00 0.00 0.00 2.69
4098 4214 0.399833 GCCAGAGGGGAAGATGATCC 59.600 60.000 0.00 0.00 40.01 3.36
4226 4342 1.302431 CAAGACCATGTGGCGACCA 60.302 57.895 0.00 0.00 39.32 4.02
4254 4370 0.108138 CCAACCACTCGGCTAGGAAG 60.108 60.000 0.00 0.00 34.57 3.46
4255 4371 0.608640 CAACCACTCGGCTAGGAAGT 59.391 55.000 0.00 0.00 34.57 3.01
4256 4372 1.822990 CAACCACTCGGCTAGGAAGTA 59.177 52.381 0.00 0.00 34.57 2.24
4257 4373 1.765230 ACCACTCGGCTAGGAAGTAG 58.235 55.000 0.00 0.00 34.57 2.57
4258 4374 1.033574 CCACTCGGCTAGGAAGTAGG 58.966 60.000 0.00 0.00 0.00 3.18
4259 4375 1.409802 CCACTCGGCTAGGAAGTAGGA 60.410 57.143 0.00 0.00 0.00 2.94
4260 4376 2.376109 CACTCGGCTAGGAAGTAGGAA 58.624 52.381 0.00 0.00 0.00 3.36
4261 4377 2.099427 CACTCGGCTAGGAAGTAGGAAC 59.901 54.545 0.00 0.00 0.00 3.62
4262 4378 2.291411 ACTCGGCTAGGAAGTAGGAACA 60.291 50.000 0.00 0.00 0.00 3.18
4264 4380 2.100989 CGGCTAGGAAGTAGGAACACT 58.899 52.381 0.00 0.00 0.00 3.55
4265 4381 3.054139 TCGGCTAGGAAGTAGGAACACTA 60.054 47.826 0.00 0.00 0.00 2.74
4282 4398 9.487442 AGGAACACTACTACTACTACTACTACT 57.513 37.037 0.00 0.00 0.00 2.57
4311 4427 5.479716 ACTACTACACTTTGCAAACACAC 57.520 39.130 8.05 0.00 0.00 3.82
4312 4428 3.775661 ACTACACTTTGCAAACACACC 57.224 42.857 8.05 0.00 0.00 4.16
4354 4478 9.549078 ACGAAAATAATCCTAGGATTCTTCTTC 57.451 33.333 35.17 28.46 43.04 2.87
4419 4543 9.341899 GTTAAGAACATTATCATGTCAACAACC 57.658 33.333 0.00 0.00 43.34 3.77
4420 4544 7.523293 AAGAACATTATCATGTCAACAACCA 57.477 32.000 0.00 0.00 43.34 3.67
4421 4545 7.149569 AGAACATTATCATGTCAACAACCAG 57.850 36.000 0.00 0.00 43.34 4.00
4594 4744 7.642669 TGACTCTTTGTTTCTCAATCATCAAC 58.357 34.615 0.00 0.00 35.84 3.18
4601 4751 7.087409 TGTTTCTCAATCATCAACGCATTAT 57.913 32.000 0.00 0.00 0.00 1.28
4615 4781 6.698329 TCAACGCATTATGCTAGTACGTAAAT 59.302 34.615 15.54 0.00 42.25 1.40
4616 4782 6.686130 ACGCATTATGCTAGTACGTAAATC 57.314 37.500 15.54 0.00 42.25 2.17
4617 4783 5.632347 ACGCATTATGCTAGTACGTAAATCC 59.368 40.000 15.54 0.00 42.25 3.01
4618 4784 5.631929 CGCATTATGCTAGTACGTAAATCCA 59.368 40.000 15.54 0.00 42.25 3.41
4619 4785 6.310467 CGCATTATGCTAGTACGTAAATCCAT 59.690 38.462 15.54 1.29 42.25 3.41
4620 4786 7.148639 CGCATTATGCTAGTACGTAAATCCATT 60.149 37.037 15.54 0.00 42.25 3.16
4621 4787 8.169268 GCATTATGCTAGTACGTAAATCCATTC 58.831 37.037 10.27 0.00 40.96 2.67
4622 4788 8.656849 CATTATGCTAGTACGTAAATCCATTCC 58.343 37.037 0.00 0.00 0.00 3.01
4623 4789 5.601583 TGCTAGTACGTAAATCCATTCCA 57.398 39.130 0.00 0.00 0.00 3.53
4624 4790 5.353938 TGCTAGTACGTAAATCCATTCCAC 58.646 41.667 0.00 0.00 0.00 4.02
4625 4791 5.105269 TGCTAGTACGTAAATCCATTCCACA 60.105 40.000 0.00 0.00 0.00 4.17
4626 4792 5.462398 GCTAGTACGTAAATCCATTCCACAG 59.538 44.000 0.00 0.00 0.00 3.66
4627 4793 4.766375 AGTACGTAAATCCATTCCACAGG 58.234 43.478 0.00 0.00 0.00 4.00
4628 4794 3.992943 ACGTAAATCCATTCCACAGGA 57.007 42.857 0.00 0.00 38.50 3.86
4629 4795 4.295141 ACGTAAATCCATTCCACAGGAA 57.705 40.909 0.30 0.30 46.39 3.36
4630 4796 4.658063 ACGTAAATCCATTCCACAGGAAA 58.342 39.130 2.16 0.00 45.41 3.13
4757 4924 7.362662 GCAGAGACATCATAAAACACTCAAAA 58.637 34.615 0.00 0.00 0.00 2.44
4778 4945 6.736110 AAAGGCATGGTATCAATGCTTAAT 57.264 33.333 8.67 0.00 40.82 1.40
4817 4984 0.536006 ACAGACCACTCAAAGGCTGC 60.536 55.000 0.00 0.00 35.24 5.25
4818 4985 0.250640 CAGACCACTCAAAGGCTGCT 60.251 55.000 0.00 0.00 0.00 4.24
4819 4986 0.475906 AGACCACTCAAAGGCTGCTT 59.524 50.000 0.00 0.00 0.00 3.91
4820 4987 0.595095 GACCACTCAAAGGCTGCTTG 59.405 55.000 0.00 0.00 0.00 4.01
4821 4988 0.825010 ACCACTCAAAGGCTGCTTGG 60.825 55.000 0.00 0.00 34.39 3.61
4822 4989 0.825010 CCACTCAAAGGCTGCTTGGT 60.825 55.000 0.00 0.00 0.00 3.67
4823 4990 1.035139 CACTCAAAGGCTGCTTGGTT 58.965 50.000 0.00 0.00 0.00 3.67
4824 4991 1.035139 ACTCAAAGGCTGCTTGGTTG 58.965 50.000 0.00 0.00 0.00 3.77
4825 4992 0.316204 CTCAAAGGCTGCTTGGTTGG 59.684 55.000 0.00 0.00 0.00 3.77
4826 4993 1.301165 CAAAGGCTGCTTGGTTGGC 60.301 57.895 0.00 0.00 0.00 4.52
4827 4994 1.458209 AAAGGCTGCTTGGTTGGCT 60.458 52.632 0.00 0.00 38.25 4.75
4828 4995 1.751349 AAAGGCTGCTTGGTTGGCTG 61.751 55.000 0.00 0.00 36.71 4.85
4855 5022 1.210478 TGGCCCTCTAGAATCTTGCAC 59.790 52.381 0.00 0.00 0.00 4.57
5013 5180 5.768164 TGGAGGGTTCTTAAAACAGAATGAC 59.232 40.000 0.00 0.00 39.69 3.06
5087 5255 3.077359 CCTGCCAAGTCCAAAACTCTAG 58.923 50.000 0.00 0.00 37.17 2.43
5111 5279 7.165485 AGCCATACACACAATTAACTCACTTA 58.835 34.615 0.00 0.00 0.00 2.24
5150 5318 6.224584 TCGACATTTATACAAGGTGACAACA 58.775 36.000 0.00 0.00 0.00 3.33
5190 5358 4.591498 TCCCAGCTCACTAACTTCTAAACA 59.409 41.667 0.00 0.00 0.00 2.83
5204 5372 6.033966 ACTTCTAAACAAAGCCAACGAAAAG 58.966 36.000 0.00 0.00 0.00 2.27
5247 5417 6.591001 AGGTGGACAAAATAAAGCAAAATGT 58.409 32.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.175990 AGAGAATTGCCCAGTTAATTAACGAAA 59.824 33.333 19.92 9.46 40.96 3.46
1 2 6.657541 AGAGAATTGCCCAGTTAATTAACGAA 59.342 34.615 19.92 10.87 40.96 3.85
2 3 6.177610 AGAGAATTGCCCAGTTAATTAACGA 58.822 36.000 19.92 6.43 40.96 3.85
3 4 6.436843 AGAGAATTGCCCAGTTAATTAACG 57.563 37.500 19.92 15.03 40.96 3.18
4 5 8.056407 AGAAGAGAATTGCCCAGTTAATTAAC 57.944 34.615 18.77 18.77 36.46 2.01
5 6 8.650143 AAGAAGAGAATTGCCCAGTTAATTAA 57.350 30.769 0.00 0.00 0.00 1.40
6 7 8.109634 AGAAGAAGAGAATTGCCCAGTTAATTA 58.890 33.333 0.00 0.00 0.00 1.40
7 8 6.950619 AGAAGAAGAGAATTGCCCAGTTAATT 59.049 34.615 0.00 0.00 0.00 1.40
8 9 6.488715 AGAAGAAGAGAATTGCCCAGTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
9 10 5.880901 AGAAGAAGAGAATTGCCCAGTTAA 58.119 37.500 0.00 0.00 0.00 2.01
10 11 5.505181 AGAAGAAGAGAATTGCCCAGTTA 57.495 39.130 0.00 0.00 0.00 2.24
11 12 4.379302 AGAAGAAGAGAATTGCCCAGTT 57.621 40.909 0.00 0.00 0.00 3.16
12 13 4.379302 AAGAAGAAGAGAATTGCCCAGT 57.621 40.909 0.00 0.00 0.00 4.00
13 14 7.401955 AATTAAGAAGAAGAGAATTGCCCAG 57.598 36.000 0.00 0.00 0.00 4.45
14 15 8.877864 TTAATTAAGAAGAAGAGAATTGCCCA 57.122 30.769 0.00 0.00 0.00 5.36
15 16 9.958234 GATTAATTAAGAAGAAGAGAATTGCCC 57.042 33.333 3.94 0.00 0.00 5.36
16 17 9.657121 CGATTAATTAAGAAGAAGAGAATTGCC 57.343 33.333 3.94 0.00 0.00 4.52
22 23 9.973450 CCTCATCGATTAATTAAGAAGAAGAGA 57.027 33.333 21.25 12.30 0.00 3.10
23 24 8.707839 GCCTCATCGATTAATTAAGAAGAAGAG 58.292 37.037 16.89 16.89 0.00 2.85
24 25 8.204160 TGCCTCATCGATTAATTAAGAAGAAGA 58.796 33.333 3.94 5.03 0.00 2.87
25 26 8.370493 TGCCTCATCGATTAATTAAGAAGAAG 57.630 34.615 3.94 1.26 0.00 2.85
26 27 8.731275 TTGCCTCATCGATTAATTAAGAAGAA 57.269 30.769 3.94 0.00 0.00 2.52
27 28 8.731275 TTTGCCTCATCGATTAATTAAGAAGA 57.269 30.769 3.94 3.72 0.00 2.87
34 35 8.981647 GCAAAATATTTGCCTCATCGATTAATT 58.018 29.630 15.12 0.00 39.38 1.40
35 36 8.524870 GCAAAATATTTGCCTCATCGATTAAT 57.475 30.769 15.12 0.00 39.38 1.40
36 37 7.928908 GCAAAATATTTGCCTCATCGATTAA 57.071 32.000 15.12 0.00 39.38 1.40
48 49 4.688413 TCAAAACGGAGGCAAAATATTTGC 59.312 37.500 17.18 17.18 44.22 3.68
49 50 6.777526 TTCAAAACGGAGGCAAAATATTTG 57.222 33.333 0.39 0.00 0.00 2.32
50 51 7.793927 TTTTCAAAACGGAGGCAAAATATTT 57.206 28.000 0.00 0.00 0.00 1.40
51 52 7.793927 TTTTTCAAAACGGAGGCAAAATATT 57.206 28.000 0.00 0.00 0.00 1.28
73 74 9.781633 TCTCATCCACAATTTGAAATCATTTTT 57.218 25.926 2.79 0.00 0.00 1.94
74 75 9.431887 CTCTCATCCACAATTTGAAATCATTTT 57.568 29.630 2.79 0.00 0.00 1.82
75 76 7.548075 GCTCTCATCCACAATTTGAAATCATTT 59.452 33.333 2.79 0.00 0.00 2.32
76 77 7.039882 GCTCTCATCCACAATTTGAAATCATT 58.960 34.615 2.79 0.00 0.00 2.57
77 78 6.380274 AGCTCTCATCCACAATTTGAAATCAT 59.620 34.615 2.79 0.00 0.00 2.45
78 79 5.713389 AGCTCTCATCCACAATTTGAAATCA 59.287 36.000 2.79 0.00 0.00 2.57
79 80 6.205101 AGCTCTCATCCACAATTTGAAATC 57.795 37.500 2.79 0.00 0.00 2.17
80 81 7.613022 TCTTAGCTCTCATCCACAATTTGAAAT 59.387 33.333 2.79 0.00 0.00 2.17
81 82 6.942005 TCTTAGCTCTCATCCACAATTTGAAA 59.058 34.615 2.79 0.00 0.00 2.69
82 83 6.475504 TCTTAGCTCTCATCCACAATTTGAA 58.524 36.000 2.79 0.00 0.00 2.69
83 84 6.053632 TCTTAGCTCTCATCCACAATTTGA 57.946 37.500 2.79 0.00 0.00 2.69
84 85 6.939132 ATCTTAGCTCTCATCCACAATTTG 57.061 37.500 0.00 0.00 0.00 2.32
85 86 7.147408 ACCTATCTTAGCTCTCATCCACAATTT 60.147 37.037 0.00 0.00 0.00 1.82
86 87 6.328672 ACCTATCTTAGCTCTCATCCACAATT 59.671 38.462 0.00 0.00 0.00 2.32
87 88 5.843421 ACCTATCTTAGCTCTCATCCACAAT 59.157 40.000 0.00 0.00 0.00 2.71
88 89 5.069648 CACCTATCTTAGCTCTCATCCACAA 59.930 44.000 0.00 0.00 0.00 3.33
89 90 4.586421 CACCTATCTTAGCTCTCATCCACA 59.414 45.833 0.00 0.00 0.00 4.17
90 91 4.021544 CCACCTATCTTAGCTCTCATCCAC 60.022 50.000 0.00 0.00 0.00 4.02
91 92 4.155709 CCACCTATCTTAGCTCTCATCCA 58.844 47.826 0.00 0.00 0.00 3.41
92 93 3.513515 CCCACCTATCTTAGCTCTCATCC 59.486 52.174 0.00 0.00 0.00 3.51
93 94 4.411927 TCCCACCTATCTTAGCTCTCATC 58.588 47.826 0.00 0.00 0.00 2.92
94 95 4.477536 TCCCACCTATCTTAGCTCTCAT 57.522 45.455 0.00 0.00 0.00 2.90
95 96 3.973472 TCCCACCTATCTTAGCTCTCA 57.027 47.619 0.00 0.00 0.00 3.27
96 97 4.401202 GCTATCCCACCTATCTTAGCTCTC 59.599 50.000 0.00 0.00 31.60 3.20
97 98 4.349365 GCTATCCCACCTATCTTAGCTCT 58.651 47.826 0.00 0.00 31.60 4.09
98 99 3.129638 CGCTATCCCACCTATCTTAGCTC 59.870 52.174 0.00 0.00 32.00 4.09
99 100 3.093057 CGCTATCCCACCTATCTTAGCT 58.907 50.000 0.00 0.00 32.00 3.32
100 101 3.090037 TCGCTATCCCACCTATCTTAGC 58.910 50.000 0.00 0.00 0.00 3.09
101 102 4.590918 TCTCGCTATCCCACCTATCTTAG 58.409 47.826 0.00 0.00 0.00 2.18
102 103 4.288887 TCTCTCGCTATCCCACCTATCTTA 59.711 45.833 0.00 0.00 0.00 2.10
103 104 3.074687 TCTCTCGCTATCCCACCTATCTT 59.925 47.826 0.00 0.00 0.00 2.40
104 105 2.645297 TCTCTCGCTATCCCACCTATCT 59.355 50.000 0.00 0.00 0.00 1.98
105 106 3.074675 TCTCTCGCTATCCCACCTATC 57.925 52.381 0.00 0.00 0.00 2.08
106 107 3.245443 ACATCTCTCGCTATCCCACCTAT 60.245 47.826 0.00 0.00 0.00 2.57
107 108 2.108425 ACATCTCTCGCTATCCCACCTA 59.892 50.000 0.00 0.00 0.00 3.08
108 109 1.133325 ACATCTCTCGCTATCCCACCT 60.133 52.381 0.00 0.00 0.00 4.00
109 110 1.333177 ACATCTCTCGCTATCCCACC 58.667 55.000 0.00 0.00 0.00 4.61
110 111 3.570550 AGTTACATCTCTCGCTATCCCAC 59.429 47.826 0.00 0.00 0.00 4.61
111 112 3.833732 AGTTACATCTCTCGCTATCCCA 58.166 45.455 0.00 0.00 0.00 4.37
112 113 4.857509 AAGTTACATCTCTCGCTATCCC 57.142 45.455 0.00 0.00 0.00 3.85
113 114 6.972722 ACTTAAGTTACATCTCTCGCTATCC 58.027 40.000 1.12 0.00 0.00 2.59
114 115 8.347035 AGAACTTAAGTTACATCTCTCGCTATC 58.653 37.037 20.58 3.05 38.56 2.08
115 116 8.132362 CAGAACTTAAGTTACATCTCTCGCTAT 58.868 37.037 20.58 0.00 38.56 2.97
116 117 7.473366 CAGAACTTAAGTTACATCTCTCGCTA 58.527 38.462 20.58 0.00 38.56 4.26
117 118 6.326375 CAGAACTTAAGTTACATCTCTCGCT 58.674 40.000 20.58 6.91 38.56 4.93
118 119 5.004916 GCAGAACTTAAGTTACATCTCTCGC 59.995 44.000 20.58 13.55 38.56 5.03
119 120 6.326375 AGCAGAACTTAAGTTACATCTCTCG 58.674 40.000 20.58 8.66 38.56 4.04
120 121 8.032451 AGAAGCAGAACTTAAGTTACATCTCTC 58.968 37.037 20.58 11.22 39.29 3.20
121 122 7.902087 AGAAGCAGAACTTAAGTTACATCTCT 58.098 34.615 20.58 15.71 39.29 3.10
122 123 8.032451 AGAGAAGCAGAACTTAAGTTACATCTC 58.968 37.037 25.18 25.18 39.29 2.75
123 124 7.816995 CAGAGAAGCAGAACTTAAGTTACATCT 59.183 37.037 20.58 18.21 39.29 2.90
124 125 7.600752 ACAGAGAAGCAGAACTTAAGTTACATC 59.399 37.037 20.58 14.45 39.29 3.06
125 126 7.386299 CACAGAGAAGCAGAACTTAAGTTACAT 59.614 37.037 20.58 7.51 39.29 2.29
126 127 6.701841 CACAGAGAAGCAGAACTTAAGTTACA 59.298 38.462 20.58 0.00 39.29 2.41
127 128 6.146347 CCACAGAGAAGCAGAACTTAAGTTAC 59.854 42.308 20.58 12.97 39.29 2.50
128 129 6.183360 ACCACAGAGAAGCAGAACTTAAGTTA 60.183 38.462 20.58 0.00 39.29 2.24
129 130 5.059833 CCACAGAGAAGCAGAACTTAAGTT 58.940 41.667 20.67 20.67 39.29 2.66
130 131 4.101741 ACCACAGAGAAGCAGAACTTAAGT 59.898 41.667 1.12 1.12 39.29 2.24
131 132 4.636249 ACCACAGAGAAGCAGAACTTAAG 58.364 43.478 0.00 0.00 39.29 1.85
132 133 4.689612 ACCACAGAGAAGCAGAACTTAA 57.310 40.909 0.00 0.00 39.29 1.85
133 134 4.380531 CAACCACAGAGAAGCAGAACTTA 58.619 43.478 0.00 0.00 39.29 2.24
134 135 3.209410 CAACCACAGAGAAGCAGAACTT 58.791 45.455 0.00 0.00 42.98 2.66
135 136 2.843701 CAACCACAGAGAAGCAGAACT 58.156 47.619 0.00 0.00 0.00 3.01
136 137 1.265365 GCAACCACAGAGAAGCAGAAC 59.735 52.381 0.00 0.00 0.00 3.01
137 138 1.134128 TGCAACCACAGAGAAGCAGAA 60.134 47.619 0.00 0.00 0.00 3.02
138 139 0.469494 TGCAACCACAGAGAAGCAGA 59.531 50.000 0.00 0.00 0.00 4.26
139 140 0.590195 GTGCAACCACAGAGAAGCAG 59.410 55.000 0.00 0.00 41.67 4.24
140 141 0.181114 AGTGCAACCACAGAGAAGCA 59.819 50.000 0.00 0.00 44.53 3.91
141 142 0.590195 CAGTGCAACCACAGAGAAGC 59.410 55.000 0.00 0.00 44.53 3.86
142 143 1.869767 GTCAGTGCAACCACAGAGAAG 59.130 52.381 0.00 0.00 44.53 2.85
143 144 1.486310 AGTCAGTGCAACCACAGAGAA 59.514 47.619 0.00 0.00 44.53 2.87
144 145 1.123077 AGTCAGTGCAACCACAGAGA 58.877 50.000 0.00 0.00 44.53 3.10
145 146 2.820059 TAGTCAGTGCAACCACAGAG 57.180 50.000 0.00 0.00 44.53 3.35
146 147 2.632512 TGATAGTCAGTGCAACCACAGA 59.367 45.455 0.00 0.00 44.53 3.41
147 148 2.998670 CTGATAGTCAGTGCAACCACAG 59.001 50.000 0.00 0.00 44.53 3.66
148 149 3.044235 CTGATAGTCAGTGCAACCACA 57.956 47.619 0.00 0.00 44.53 4.17
159 160 4.882842 TGTTACAAGGCACTGATAGTCA 57.117 40.909 0.00 0.00 40.86 3.41
160 161 6.743575 AAATGTTACAAGGCACTGATAGTC 57.256 37.500 0.00 0.00 40.86 2.59
161 162 9.899661 TTATAAATGTTACAAGGCACTGATAGT 57.100 29.630 0.00 0.00 40.86 2.12
164 165 9.243105 AGTTTATAAATGTTACAAGGCACTGAT 57.757 29.630 0.31 0.00 40.86 2.90
165 166 8.630054 AGTTTATAAATGTTACAAGGCACTGA 57.370 30.769 0.31 0.00 40.86 3.41
166 167 8.730680 AGAGTTTATAAATGTTACAAGGCACTG 58.269 33.333 0.31 0.00 40.86 3.66
168 169 9.556030 GAAGAGTTTATAAATGTTACAAGGCAC 57.444 33.333 0.31 0.00 0.00 5.01
169 170 9.515226 AGAAGAGTTTATAAATGTTACAAGGCA 57.485 29.630 0.31 0.00 0.00 4.75
170 171 9.989869 GAGAAGAGTTTATAAATGTTACAAGGC 57.010 33.333 0.31 0.00 0.00 4.35
190 191 9.737427 CGCTTTCTGTATTAATAAGAGAGAAGA 57.263 33.333 18.68 0.65 0.00 2.87
191 192 8.484008 GCGCTTTCTGTATTAATAAGAGAGAAG 58.516 37.037 18.68 16.36 0.00 2.85
192 193 7.167635 CGCGCTTTCTGTATTAATAAGAGAGAA 59.832 37.037 18.68 3.54 0.00 2.87
193 194 6.637254 CGCGCTTTCTGTATTAATAAGAGAGA 59.363 38.462 18.68 10.19 0.00 3.10
194 195 6.614580 GCGCGCTTTCTGTATTAATAAGAGAG 60.615 42.308 26.67 14.29 0.00 3.20
195 196 5.175126 GCGCGCTTTCTGTATTAATAAGAGA 59.825 40.000 26.67 0.00 0.00 3.10
196 197 5.051039 TGCGCGCTTTCTGTATTAATAAGAG 60.051 40.000 33.29 0.00 0.00 2.85
197 198 4.806775 TGCGCGCTTTCTGTATTAATAAGA 59.193 37.500 33.29 1.08 0.00 2.10
198 199 5.078153 TGCGCGCTTTCTGTATTAATAAG 57.922 39.130 33.29 0.00 0.00 1.73
199 200 5.064198 ACTTGCGCGCTTTCTGTATTAATAA 59.936 36.000 33.29 11.54 0.00 1.40
200 201 4.569162 ACTTGCGCGCTTTCTGTATTAATA 59.431 37.500 33.29 2.73 0.00 0.98
201 202 3.374058 ACTTGCGCGCTTTCTGTATTAAT 59.626 39.130 33.29 1.61 0.00 1.40
202 203 2.739913 ACTTGCGCGCTTTCTGTATTAA 59.260 40.909 33.29 12.77 0.00 1.40
203 204 2.343101 ACTTGCGCGCTTTCTGTATTA 58.657 42.857 33.29 4.14 0.00 0.98
204 205 1.128692 GACTTGCGCGCTTTCTGTATT 59.871 47.619 33.29 5.70 0.00 1.89
205 206 0.721718 GACTTGCGCGCTTTCTGTAT 59.278 50.000 33.29 8.73 0.00 2.29
206 207 0.319555 AGACTTGCGCGCTTTCTGTA 60.320 50.000 33.29 6.82 0.00 2.74
207 208 1.160329 AAGACTTGCGCGCTTTCTGT 61.160 50.000 33.29 21.45 0.00 3.41
208 209 0.040958 AAAGACTTGCGCGCTTTCTG 60.041 50.000 33.29 18.48 0.00 3.02
209 210 0.663153 AAAAGACTTGCGCGCTTTCT 59.337 45.000 33.29 25.37 31.91 2.52
210 211 0.772341 CAAAAGACTTGCGCGCTTTC 59.228 50.000 33.29 23.58 31.91 2.62
211 212 1.208642 GCAAAAGACTTGCGCGCTTT 61.209 50.000 33.29 20.53 35.58 3.51
212 213 1.658409 GCAAAAGACTTGCGCGCTT 60.658 52.632 33.29 15.19 35.58 4.68
213 214 2.050985 GCAAAAGACTTGCGCGCT 60.051 55.556 33.29 12.78 35.58 5.92
218 219 0.248621 AGCACACGCAAAAGACTTGC 60.249 50.000 0.00 0.00 42.27 4.01
219 220 1.847999 CAAGCACACGCAAAAGACTTG 59.152 47.619 0.00 0.00 42.27 3.16
220 221 1.742831 TCAAGCACACGCAAAAGACTT 59.257 42.857 0.00 0.00 42.27 3.01
221 222 1.378531 TCAAGCACACGCAAAAGACT 58.621 45.000 0.00 0.00 42.27 3.24
222 223 2.187351 TTCAAGCACACGCAAAAGAC 57.813 45.000 0.00 0.00 42.27 3.01
223 224 2.929531 TTTCAAGCACACGCAAAAGA 57.070 40.000 0.00 0.00 42.27 2.52
224 225 3.987807 TTTTTCAAGCACACGCAAAAG 57.012 38.095 0.00 0.00 42.27 2.27
243 244 8.203681 ACTTCTACTACTCCACACCTATTTTT 57.796 34.615 0.00 0.00 0.00 1.94
244 245 7.793948 ACTTCTACTACTCCACACCTATTTT 57.206 36.000 0.00 0.00 0.00 1.82
245 246 7.793948 AACTTCTACTACTCCACACCTATTT 57.206 36.000 0.00 0.00 0.00 1.40
246 247 9.490083 AATAACTTCTACTACTCCACACCTATT 57.510 33.333 0.00 0.00 0.00 1.73
247 248 8.915036 CAATAACTTCTACTACTCCACACCTAT 58.085 37.037 0.00 0.00 0.00 2.57
248 249 8.111545 TCAATAACTTCTACTACTCCACACCTA 58.888 37.037 0.00 0.00 0.00 3.08
249 250 6.952358 TCAATAACTTCTACTACTCCACACCT 59.048 38.462 0.00 0.00 0.00 4.00
250 251 7.166691 TCAATAACTTCTACTACTCCACACC 57.833 40.000 0.00 0.00 0.00 4.16
251 252 7.122353 TCCTCAATAACTTCTACTACTCCACAC 59.878 40.741 0.00 0.00 0.00 3.82
252 253 7.179966 TCCTCAATAACTTCTACTACTCCACA 58.820 38.462 0.00 0.00 0.00 4.17
253 254 7.642082 TCCTCAATAACTTCTACTACTCCAC 57.358 40.000 0.00 0.00 0.00 4.02
254 255 8.840200 ATTCCTCAATAACTTCTACTACTCCA 57.160 34.615 0.00 0.00 0.00 3.86
305 306 0.038455 TTGAACCCCCAATGTACCCG 59.962 55.000 0.00 0.00 0.00 5.28
542 544 0.905357 GGAAAGCAGTAGCAGGAGGA 59.095 55.000 0.00 0.00 45.49 3.71
555 557 0.629058 TATTGGGTGGAGGGGAAAGC 59.371 55.000 0.00 0.00 0.00 3.51
581 583 0.904865 TGCATCTCCTCGTCCCTTGT 60.905 55.000 0.00 0.00 0.00 3.16
731 750 7.990917 AGATTAGATATATAGACGTGCACCAG 58.009 38.462 12.15 0.00 0.00 4.00
1095 1114 2.178521 CCCACGAAGAGGACGACG 59.821 66.667 0.00 0.00 42.26 5.12
1248 1267 4.043200 GCCTTGTCTGTTGCCGGC 62.043 66.667 22.73 22.73 0.00 6.13
1417 1436 1.416813 CCGCTGTCGTGAGAGAATGC 61.417 60.000 0.00 0.00 43.49 3.56
1421 1440 2.343426 ATGCCGCTGTCGTGAGAGA 61.343 57.895 0.00 0.00 43.49 3.10
1571 1590 1.886861 CTTCGTGTTCTGTTCGGCGG 61.887 60.000 7.21 0.00 0.00 6.13
1578 1678 1.006102 CGCCTCCTTCGTGTTCTGT 60.006 57.895 0.00 0.00 0.00 3.41
1588 1688 3.745803 GTCGGTCGTCGCCTCCTT 61.746 66.667 4.57 0.00 39.05 3.36
1682 1782 2.049156 CGGCGCTCTTGTCAGTCA 60.049 61.111 7.64 0.00 0.00 3.41
1686 1786 2.351244 ATCCTCGGCGCTCTTGTCA 61.351 57.895 7.64 0.00 0.00 3.58
1767 1867 1.373497 CTCAGCGCTCTTGTCGGTT 60.373 57.895 7.13 0.00 35.32 4.44
1782 1882 1.375908 GCCTGTTGACGCATCCTCA 60.376 57.895 0.00 0.00 0.00 3.86
1911 2011 2.927856 TTCTTCTCGCCCTGGCCA 60.928 61.111 4.71 4.71 37.98 5.36
1980 2080 1.865340 GTCTCTTCGGCGTTCTTGTTT 59.135 47.619 6.85 0.00 0.00 2.83
2013 2113 1.493311 GTCGTCGCCAGCTTCTTTG 59.507 57.895 0.00 0.00 0.00 2.77
2157 2260 3.229697 TCTTCAGAGAGTGTGTCCTCA 57.770 47.619 0.00 0.00 33.75 3.86
2210 2313 0.321671 CTCTTCTTCGCCTTGGGTGA 59.678 55.000 0.00 0.00 40.77 4.02
2226 2329 1.680651 CTCCGTCACTGGCCTCTCT 60.681 63.158 3.32 0.00 0.00 3.10
2298 2401 1.211449 CGTCTCGTTGAGCAGCTCT 59.789 57.895 23.15 0.00 0.00 4.09
2367 2470 2.994995 TTCCGCGCCTTCTCCTCA 60.995 61.111 0.00 0.00 0.00 3.86
2394 2497 2.544486 GCCTTTGTTCTTGTGCTCCTTG 60.544 50.000 0.00 0.00 0.00 3.61
2419 2525 4.651008 GCCGACGACGACCACCAA 62.651 66.667 9.28 0.00 42.66 3.67
2461 2567 0.814457 TTGCACAGCTTCCAAACGTT 59.186 45.000 0.00 0.00 0.00 3.99
2466 2572 0.746204 TCGTGTTGCACAGCTTCCAA 60.746 50.000 0.00 0.00 33.40 3.53
2859 2968 2.509336 CCGCAGCCTACGTCAAGG 60.509 66.667 0.00 0.00 39.87 3.61
2889 2998 2.601067 TCGAACAGGTACCCGCCA 60.601 61.111 8.74 0.00 0.00 5.69
3394 3506 0.463654 TTCAACAAGAGCCAGTGCGT 60.464 50.000 0.00 0.00 44.33 5.24
3402 3516 1.611043 GCAAGCGATTCAACAAGAGC 58.389 50.000 0.00 0.00 0.00 4.09
3422 3538 2.187073 GCAACAAGCATCAGGGGAG 58.813 57.895 0.00 0.00 44.79 4.30
3423 3539 4.421365 GCAACAAGCATCAGGGGA 57.579 55.556 0.00 0.00 44.79 4.81
3624 3740 2.279069 CCTCCAGTGCTCCGTGTCT 61.279 63.158 0.00 0.00 0.00 3.41
3751 3867 4.899457 GGAAAGGAAAGGAAAGGAAAGGAA 59.101 41.667 0.00 0.00 0.00 3.36
3781 3897 2.851195 TGCTCCTCCTTCAACTTCAAC 58.149 47.619 0.00 0.00 0.00 3.18
3782 3898 3.415212 CATGCTCCTCCTTCAACTTCAA 58.585 45.455 0.00 0.00 0.00 2.69
3783 3899 2.877300 GCATGCTCCTCCTTCAACTTCA 60.877 50.000 11.37 0.00 0.00 3.02
3784 3900 1.742268 GCATGCTCCTCCTTCAACTTC 59.258 52.381 11.37 0.00 0.00 3.01
3785 3901 1.074405 TGCATGCTCCTCCTTCAACTT 59.926 47.619 20.33 0.00 0.00 2.66
3786 3902 0.694771 TGCATGCTCCTCCTTCAACT 59.305 50.000 20.33 0.00 0.00 3.16
3815 3931 1.957668 TCGATCAAGCCATGTCCATG 58.042 50.000 0.14 0.14 38.51 3.66
3816 3932 2.105306 TGATCGATCAAGCCATGTCCAT 59.895 45.455 25.44 0.00 33.08 3.41
3817 3933 1.485895 TGATCGATCAAGCCATGTCCA 59.514 47.619 25.44 0.00 33.08 4.02
4098 4214 1.674651 TCTCCCTGTCGTCACGGAG 60.675 63.158 17.23 17.23 43.42 4.63
4182 4298 3.160748 GAGCAGCCTCTCCCCCTC 61.161 72.222 0.00 0.00 35.16 4.30
4226 4342 0.179029 CGAGTGGTTGGACTTGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
4256 4372 9.487442 AGTAGTAGTAGTAGTAGTAGTGTTCCT 57.513 37.037 9.28 0.00 0.00 3.36
4277 4393 9.377312 GCAAAGTGTAGTAGTAGTAGTAGTAGT 57.623 37.037 5.34 5.34 0.00 2.73
4278 4394 9.376075 TGCAAAGTGTAGTAGTAGTAGTAGTAG 57.624 37.037 0.49 0.00 0.00 2.57
4279 4395 9.725019 TTGCAAAGTGTAGTAGTAGTAGTAGTA 57.275 33.333 0.00 0.00 0.00 1.82
4280 4396 8.627208 TTGCAAAGTGTAGTAGTAGTAGTAGT 57.373 34.615 0.00 0.00 0.00 2.73
4281 4397 9.339492 GTTTGCAAAGTGTAGTAGTAGTAGTAG 57.661 37.037 13.26 0.00 0.00 2.57
4282 4398 8.849168 TGTTTGCAAAGTGTAGTAGTAGTAGTA 58.151 33.333 13.26 0.00 0.00 1.82
4283 4399 7.650903 GTGTTTGCAAAGTGTAGTAGTAGTAGT 59.349 37.037 13.26 0.00 0.00 2.73
4284 4400 7.650504 TGTGTTTGCAAAGTGTAGTAGTAGTAG 59.349 37.037 13.26 0.00 0.00 2.57
4285 4401 7.436080 GTGTGTTTGCAAAGTGTAGTAGTAGTA 59.564 37.037 13.26 0.00 0.00 1.82
4286 4402 6.257193 GTGTGTTTGCAAAGTGTAGTAGTAGT 59.743 38.462 13.26 0.00 0.00 2.73
4287 4403 6.292703 GGTGTGTTTGCAAAGTGTAGTAGTAG 60.293 42.308 13.26 0.00 0.00 2.57
4288 4404 5.524646 GGTGTGTTTGCAAAGTGTAGTAGTA 59.475 40.000 13.26 0.00 0.00 1.82
4289 4405 4.334481 GGTGTGTTTGCAAAGTGTAGTAGT 59.666 41.667 13.26 0.00 0.00 2.73
4290 4406 4.334203 TGGTGTGTTTGCAAAGTGTAGTAG 59.666 41.667 13.26 0.00 0.00 2.57
4291 4407 4.262617 TGGTGTGTTTGCAAAGTGTAGTA 58.737 39.130 13.26 0.00 0.00 1.82
4292 4408 3.085533 TGGTGTGTTTGCAAAGTGTAGT 58.914 40.909 13.26 0.00 0.00 2.73
4293 4409 3.128589 ACTGGTGTGTTTGCAAAGTGTAG 59.871 43.478 13.26 8.99 0.00 2.74
4294 4410 3.085533 ACTGGTGTGTTTGCAAAGTGTA 58.914 40.909 13.26 0.00 0.00 2.90
4295 4411 1.892474 ACTGGTGTGTTTGCAAAGTGT 59.108 42.857 13.26 1.40 0.00 3.55
4296 4412 2.652941 ACTGGTGTGTTTGCAAAGTG 57.347 45.000 13.26 0.80 0.00 3.16
4311 4427 2.560504 TCGTTATTGCTGCCATACTGG 58.439 47.619 0.00 0.00 41.55 4.00
4312 4428 4.614555 TTTCGTTATTGCTGCCATACTG 57.385 40.909 0.00 0.00 0.00 2.74
4413 4537 7.833285 ATTTTACCATACAAGTCTGGTTGTT 57.167 32.000 14.36 0.00 43.21 2.83
4414 4538 9.528489 AATATTTTACCATACAAGTCTGGTTGT 57.472 29.630 14.36 0.00 43.21 3.32
4601 4751 5.105269 TGTGGAATGGATTTACGTACTAGCA 60.105 40.000 0.00 0.00 0.00 3.49
4615 4781 3.237746 TGCAATTTTCCTGTGGAATGGA 58.762 40.909 0.00 0.00 41.71 3.41
4616 4782 3.681593 TGCAATTTTCCTGTGGAATGG 57.318 42.857 0.00 0.00 41.71 3.16
4617 4783 4.628333 GTGATGCAATTTTCCTGTGGAATG 59.372 41.667 0.00 0.00 41.71 2.67
4618 4784 4.283978 TGTGATGCAATTTTCCTGTGGAAT 59.716 37.500 0.00 0.00 41.71 3.01
4619 4785 3.640498 TGTGATGCAATTTTCCTGTGGAA 59.360 39.130 0.00 0.00 40.27 3.53
4620 4786 3.005684 GTGTGATGCAATTTTCCTGTGGA 59.994 43.478 0.00 0.00 0.00 4.02
4621 4787 3.319755 GTGTGATGCAATTTTCCTGTGG 58.680 45.455 0.00 0.00 0.00 4.17
4622 4788 3.319755 GGTGTGATGCAATTTTCCTGTG 58.680 45.455 0.00 0.00 0.00 3.66
4623 4789 2.299867 GGGTGTGATGCAATTTTCCTGT 59.700 45.455 0.00 0.00 0.00 4.00
4624 4790 2.354003 GGGGTGTGATGCAATTTTCCTG 60.354 50.000 0.00 0.00 0.00 3.86
4625 4791 1.901833 GGGGTGTGATGCAATTTTCCT 59.098 47.619 0.00 0.00 0.00 3.36
4626 4792 1.622811 TGGGGTGTGATGCAATTTTCC 59.377 47.619 0.00 0.00 0.00 3.13
4627 4793 2.299867 ACTGGGGTGTGATGCAATTTTC 59.700 45.455 0.00 0.00 0.00 2.29
4628 4794 2.037511 CACTGGGGTGTGATGCAATTTT 59.962 45.455 0.00 0.00 40.12 1.82
4629 4795 1.619827 CACTGGGGTGTGATGCAATTT 59.380 47.619 0.00 0.00 40.12 1.82
4630 4796 1.259609 CACTGGGGTGTGATGCAATT 58.740 50.000 0.00 0.00 40.12 2.32
4757 4924 9.182214 CTAATATTAAGCATTGATACCATGCCT 57.818 33.333 1.27 0.00 41.88 4.75
4817 4984 3.688159 GCCAGGCAGCCAACCAAG 61.688 66.667 15.80 0.00 0.00 3.61
4818 4985 4.223125 AGCCAGGCAGCCAACCAA 62.223 61.111 15.80 0.00 0.00 3.67
4819 4986 4.980702 CAGCCAGGCAGCCAACCA 62.981 66.667 15.80 0.00 0.00 3.67
4829 4996 1.059006 ATTCTAGAGGGCCAGCCAGG 61.059 60.000 11.50 0.00 41.84 4.45
4869 5036 4.754667 GGACGGAAGGGCGGTGAC 62.755 72.222 0.00 0.00 0.00 3.67
5087 5255 5.880054 AGTGAGTTAATTGTGTGTATGGC 57.120 39.130 0.00 0.00 0.00 4.40
5111 5279 5.571784 AATGTCGATGTTTGATGAGCATT 57.428 34.783 0.00 0.00 28.37 3.56
5150 5318 4.884164 GCTGGGAAGTAGCTGATATTTGTT 59.116 41.667 0.00 0.00 38.14 2.83
5190 5358 4.821805 TCAGAATCTCTTTTCGTTGGCTTT 59.178 37.500 0.00 0.00 0.00 3.51
5204 5372 3.823304 ACCTTTGGCACTTTCAGAATCTC 59.177 43.478 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.