Multiple sequence alignment - TraesCS5B01G119500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G119500 chr5B 100.000 6442 0 0 1 6442 211732993 211739434 0.000000e+00 11897.0
1 TraesCS5B01G119500 chr5B 88.194 144 17 0 4531 4674 127708256 127708399 8.590000e-39 172.0
2 TraesCS5B01G119500 chr3B 98.321 2382 34 5 1952 4329 487865919 487863540 0.000000e+00 4172.0
3 TraesCS5B01G119500 chr3B 89.714 350 6 8 4325 4674 487858324 487858005 2.780000e-113 420.0
4 TraesCS5B01G119500 chr3B 86.449 214 22 3 1 214 346604804 346604598 1.810000e-55 228.0
5 TraesCS5B01G119500 chr3B 97.436 117 3 0 1839 1955 487870955 487870839 3.940000e-47 200.0
6 TraesCS5B01G119500 chr3B 88.148 135 16 0 4532 4666 726140543 726140409 1.860000e-35 161.0
7 TraesCS5B01G119500 chr3B 80.000 145 15 13 3148 3288 622477680 622477814 1.910000e-15 95.3
8 TraesCS5B01G119500 chr2A 95.573 2146 73 11 1836 3961 409146602 409148745 0.000000e+00 3417.0
9 TraesCS5B01G119500 chr2A 95.497 2132 81 7 1834 3961 20662754 20664874 0.000000e+00 3391.0
10 TraesCS5B01G119500 chr2A 98.413 189 3 0 3959 4147 20664904 20665092 3.720000e-87 333.0
11 TraesCS5B01G119500 chr2A 96.791 187 6 0 3959 4145 409148775 409148961 4.850000e-81 313.0
12 TraesCS5B01G119500 chr2A 87.313 134 15 2 4533 4666 445994397 445994528 1.120000e-32 152.0
13 TraesCS5B01G119500 chr2A 83.621 116 18 1 4962 5077 384331897 384331783 2.460000e-19 108.0
14 TraesCS5B01G119500 chr2A 87.500 80 8 2 1839 1917 56141696 56141774 2.470000e-14 91.6
15 TraesCS5B01G119500 chr4A 94.970 2147 75 15 1836 3961 377609030 377611164 0.000000e+00 3336.0
16 TraesCS5B01G119500 chr4A 96.677 933 29 2 1836 2768 374487572 374488502 0.000000e+00 1550.0
17 TraesCS5B01G119500 chr4A 95.987 598 21 3 3365 3961 374498186 374498781 0.000000e+00 968.0
18 TraesCS5B01G119500 chr4A 97.861 187 4 0 3959 4145 377611194 377611380 2.240000e-84 324.0
19 TraesCS5B01G119500 chr4A 97.340 188 4 1 3959 4145 374498811 374498998 1.040000e-82 318.0
20 TraesCS5B01G119500 chr4A 95.679 162 5 2 3209 3368 374488503 374488664 6.410000e-65 259.0
21 TraesCS5B01G119500 chr4A 85.446 213 28 2 1 213 266931763 266931972 1.090000e-52 219.0
22 TraesCS5B01G119500 chr4A 81.176 255 34 11 2897 3147 605128259 605128015 6.590000e-45 193.0
23 TraesCS5B01G119500 chr6B 96.654 1793 50 3 1838 3630 88452191 88453973 0.000000e+00 2970.0
24 TraesCS5B01G119500 chr6B 95.846 337 13 1 3626 3961 88460508 88460844 1.580000e-150 544.0
25 TraesCS5B01G119500 chr6B 93.782 193 11 1 3955 4147 88468135 88468326 8.170000e-74 289.0
26 TraesCS5B01G119500 chr5A 94.773 1320 36 12 5153 6440 214954459 214955777 0.000000e+00 2025.0
27 TraesCS5B01G119500 chr5A 94.717 1060 34 8 786 1837 214952845 214953890 0.000000e+00 1628.0
28 TraesCS5B01G119500 chr5A 86.640 756 65 12 1 753 214952121 214952843 0.000000e+00 804.0
29 TraesCS5B01G119500 chr5A 93.852 488 24 4 4669 5154 214953889 214954372 0.000000e+00 730.0
30 TraesCS5B01G119500 chr5A 84.821 112 16 1 4960 5071 52281154 52281264 1.900000e-20 111.0
31 TraesCS5B01G119500 chr5A 83.471 121 16 4 4962 5080 631857699 631857817 6.830000e-20 110.0
32 TraesCS5B01G119500 chr5D 95.164 1158 26 13 685 1837 200784988 200786120 0.000000e+00 1801.0
33 TraesCS5B01G119500 chr5D 96.347 1013 32 4 4669 5677 200786119 200787130 0.000000e+00 1661.0
34 TraesCS5B01G119500 chr5D 96.586 703 18 5 5744 6442 200787177 200787877 0.000000e+00 1160.0
35 TraesCS5B01G119500 chr5D 94.172 326 16 3 233 557 200667634 200667957 1.610000e-135 494.0
36 TraesCS5B01G119500 chr5D 91.176 238 21 0 1 238 200648629 200648866 2.240000e-84 324.0
37 TraesCS5B01G119500 chr5D 83.486 109 14 3 4973 5080 389453031 389453136 1.480000e-16 99.0
38 TraesCS5B01G119500 chrUn 94.215 242 7 2 5701 5935 471412685 471412444 4.750000e-96 363.0
39 TraesCS5B01G119500 chr3D 88.263 213 25 0 1 213 98965816 98965604 8.290000e-64 255.0
40 TraesCS5B01G119500 chr3D 86.111 144 16 4 4534 4675 350128847 350128706 1.120000e-32 152.0
41 TraesCS5B01G119500 chr3D 84.615 143 17 5 3148 3288 468772536 468772675 3.130000e-28 137.0
42 TraesCS5B01G119500 chr3A 87.850 214 19 1 1 214 269559687 269559481 1.790000e-60 244.0
43 TraesCS5B01G119500 chr3A 83.083 266 30 8 2898 3149 610555379 610555643 1.810000e-55 228.0
44 TraesCS5B01G119500 chr3A 91.837 147 11 1 4532 4677 572535763 572535617 3.050000e-48 204.0
45 TraesCS5B01G119500 chr3A 85.806 155 18 3 4524 4676 749199472 749199320 1.860000e-35 161.0
46 TraesCS5B01G119500 chr3A 88.119 101 9 3 3148 3246 610555737 610555836 4.080000e-22 117.0
47 TraesCS5B01G119500 chr6A 86.385 213 24 5 3 213 371721897 371721688 1.810000e-55 228.0
48 TraesCS5B01G119500 chr6A 82.629 213 37 0 1 213 284667083 284666871 8.530000e-44 189.0
49 TraesCS5B01G119500 chr6A 82.308 130 21 2 4961 5090 594634370 594634497 1.900000e-20 111.0
50 TraesCS5B01G119500 chr6D 85.581 215 27 4 1 213 263953985 263954197 8.410000e-54 222.0
51 TraesCS5B01G119500 chr1A 81.961 255 32 11 2897 3147 474178825 474178581 3.050000e-48 204.0
52 TraesCS5B01G119500 chr1A 80.392 255 36 11 2897 3147 261372133 261372377 1.430000e-41 182.0
53 TraesCS5B01G119500 chr1A 83.696 92 10 5 1836 1923 21006818 21006908 1.490000e-11 82.4
54 TraesCS5B01G119500 chr2D 90.370 135 11 2 4533 4666 582500292 582500425 6.640000e-40 176.0
55 TraesCS5B01G119500 chr2D 81.818 132 6 9 4218 4347 550642432 550642547 1.910000e-15 95.3
56 TraesCS5B01G119500 chr4B 88.889 135 15 0 4532 4666 117023225 117023359 4.000000e-37 167.0
57 TraesCS5B01G119500 chr4B 79.545 132 24 3 4962 5092 561752442 561752313 2.470000e-14 91.6
58 TraesCS5B01G119500 chr4D 89.024 82 9 0 1838 1919 5251704 5251785 1.140000e-17 102.0
59 TraesCS5B01G119500 chr4D 83.495 103 14 3 4961 5062 105371444 105371544 6.880000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G119500 chr5B 211732993 211739434 6441 False 11897.000000 11897 100.000000 1 6442 1 chr5B.!!$F2 6441
1 TraesCS5B01G119500 chr3B 487863540 487865919 2379 True 4172.000000 4172 98.321000 1952 4329 1 chr3B.!!$R3 2377
2 TraesCS5B01G119500 chr2A 409146602 409148961 2359 False 1865.000000 3417 96.182000 1836 4145 2 chr2A.!!$F4 2309
3 TraesCS5B01G119500 chr2A 20662754 20665092 2338 False 1862.000000 3391 96.955000 1834 4147 2 chr2A.!!$F3 2313
4 TraesCS5B01G119500 chr4A 377609030 377611380 2350 False 1830.000000 3336 96.415500 1836 4145 2 chr4A.!!$F4 2309
5 TraesCS5B01G119500 chr4A 374487572 374488664 1092 False 904.500000 1550 96.178000 1836 3368 2 chr4A.!!$F2 1532
6 TraesCS5B01G119500 chr4A 374498186 374498998 812 False 643.000000 968 96.663500 3365 4145 2 chr4A.!!$F3 780
7 TraesCS5B01G119500 chr6B 88452191 88453973 1782 False 2970.000000 2970 96.654000 1838 3630 1 chr6B.!!$F1 1792
8 TraesCS5B01G119500 chr5A 214952121 214955777 3656 False 1296.750000 2025 92.495500 1 6440 4 chr5A.!!$F3 6439
9 TraesCS5B01G119500 chr5D 200784988 200787877 2889 False 1540.666667 1801 96.032333 685 6442 3 chr5D.!!$F4 5757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 773 0.108186 TCCACATCATGTCCGCAGAC 60.108 55.000 0.00 0.0 43.83 3.51 F
1376 1387 0.179121 CGAATCCGGTGGTCGATTCA 60.179 55.000 15.83 0.0 42.43 2.57 F
1881 1892 2.287308 TGCAACGGGAGAAAAACAATCG 60.287 45.455 0.00 0.0 0.00 3.34 F
3164 3193 5.255687 ACATATCTTTGTCATCAACCAGCA 58.744 37.500 0.00 0.0 32.93 4.41 F
4406 4473 0.108281 GGTCGAGAGGTTGGTTAGGC 60.108 60.000 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1733 1.989706 ACCCGGTGTAAGTTTTGCAT 58.010 45.000 0.00 0.0 0.00 3.96 R
3164 3193 6.113411 GGTTTAGCAATGTACCTCATACACT 58.887 40.000 0.00 0.0 46.65 3.55 R
4196 4263 4.785453 CAACCTCTCGGCCCTGCC 62.785 72.222 0.00 0.0 46.75 4.85 R
4499 4566 0.035152 CTAACCAAACCCGGTACCCC 60.035 60.000 6.25 0.0 38.76 4.95 R
5989 6174 0.746063 TTGATGCAATGGATTCCGCC 59.254 50.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.071314 TCCATGGTTGGTCCCTTGGT 61.071 55.000 12.58 0.00 45.59 3.67
26 27 1.287739 CCATGGTTGGTCCCTTGGTAT 59.712 52.381 2.57 0.00 42.26 2.73
30 31 1.064685 GGTTGGTCCCTTGGTATCTGG 60.065 57.143 0.00 0.00 0.00 3.86
44 45 3.877508 GGTATCTGGGTATGCAAAGTGTC 59.122 47.826 0.00 0.00 0.00 3.67
46 47 3.334583 TCTGGGTATGCAAAGTGTCTC 57.665 47.619 0.00 0.00 0.00 3.36
48 49 1.338674 TGGGTATGCAAAGTGTCTCCG 60.339 52.381 0.00 0.00 0.00 4.63
56 57 0.759346 AAAGTGTCTCCGCTTGAGGT 59.241 50.000 0.89 0.00 40.47 3.85
62 63 2.290768 TGTCTCCGCTTGAGGTAGTAGT 60.291 50.000 0.89 0.00 41.76 2.73
84 85 5.934043 AGTCATGTCTCATGTGATTCGAAAA 59.066 36.000 0.00 0.00 0.00 2.29
111 112 0.768221 AGCAAGGAGGGAGTTCACCA 60.768 55.000 0.00 0.00 0.00 4.17
117 118 0.971386 GAGGGAGTTCACCACGGTTA 59.029 55.000 0.00 0.00 0.00 2.85
124 125 1.922545 GTTCACCACGGTTACGATAGC 59.077 52.381 0.00 0.00 44.60 2.97
125 126 0.457035 TCACCACGGTTACGATAGCC 59.543 55.000 0.00 0.00 44.60 3.93
126 127 0.529119 CACCACGGTTACGATAGCCC 60.529 60.000 0.00 0.00 44.60 5.19
146 147 0.955428 TTGCACGAGCCCTTGTCATC 60.955 55.000 1.39 0.00 41.13 2.92
177 178 0.697658 TGCCTTGGGTGATGATGACA 59.302 50.000 0.00 0.00 0.00 3.58
206 207 1.064463 TGGATGACCAAAGGATGCTCC 60.064 52.381 0.00 0.00 43.91 4.70
223 224 3.179048 GCTCCGCATCATTTTGTTTACC 58.821 45.455 0.00 0.00 0.00 2.85
229 230 5.147865 CGCATCATTTTGTTTACCGTGTAA 58.852 37.500 0.00 0.00 0.00 2.41
237 238 5.600908 TTGTTTACCGTGTAATGAGCTTC 57.399 39.130 0.00 0.00 0.00 3.86
238 239 4.633175 TGTTTACCGTGTAATGAGCTTCA 58.367 39.130 0.00 0.00 0.00 3.02
244 245 3.502211 CCGTGTAATGAGCTTCAAAGGTT 59.498 43.478 0.00 0.00 36.78 3.50
251 252 0.890996 AGCTTCAAAGGTTCTGGCCG 60.891 55.000 0.00 0.00 31.69 6.13
262 263 0.899720 TTCTGGCCGTCTATCCGTTT 59.100 50.000 0.00 0.00 0.00 3.60
270 271 3.399330 CCGTCTATCCGTTTTATGCCAT 58.601 45.455 0.00 0.00 0.00 4.40
271 272 3.432252 CCGTCTATCCGTTTTATGCCATC 59.568 47.826 0.00 0.00 0.00 3.51
280 281 4.025563 CCGTTTTATGCCATCAAATGCATG 60.026 41.667 0.00 0.00 46.99 4.06
287 288 8.596271 TTATGCCATCAAATGCATGATAAAAG 57.404 30.769 0.00 0.00 46.99 2.27
292 294 7.254658 GCCATCAAATGCATGATAAAAGGAAAG 60.255 37.037 0.00 0.00 37.96 2.62
294 296 9.542462 CATCAAATGCATGATAAAAGGAAAGAT 57.458 29.630 0.00 0.00 37.96 2.40
299 301 7.104043 TGCATGATAAAAGGAAAGATTGGAG 57.896 36.000 0.00 0.00 0.00 3.86
302 304 7.469732 GCATGATAAAAGGAAAGATTGGAGGAG 60.470 40.741 0.00 0.00 0.00 3.69
318 320 3.305471 GGAGGAGCCTTATGACGTATGTC 60.305 52.174 8.21 8.21 45.71 3.06
338 340 3.612860 GTCTCATGTACGTGGACATCAAC 59.387 47.826 21.88 7.33 37.99 3.18
340 342 3.993736 CTCATGTACGTGGACATCAACAA 59.006 43.478 15.02 0.00 37.99 2.83
410 414 7.553881 TTCAAGGTATATTTGTAGCTCAAGC 57.446 36.000 0.00 0.00 37.35 4.01
432 436 5.925969 AGCATTTTACCAATATATTTGCGGC 59.074 36.000 9.31 0.00 33.04 6.53
458 462 7.487189 CCATATTCACTCAACAGAAATCTTTGC 59.513 37.037 0.00 0.00 0.00 3.68
483 487 7.456253 CATTTGACTAACACAAAGATACTCCG 58.544 38.462 0.00 0.00 39.90 4.63
537 541 4.323485 CCACCTGACCTAGTTTGCAGAATA 60.323 45.833 0.00 0.00 0.00 1.75
550 554 6.548622 AGTTTGCAGAATAGGACATATTGCAT 59.451 34.615 7.17 0.00 37.42 3.96
571 575 1.206371 AGGTTACTCCCCACGAAATCG 59.794 52.381 0.48 0.48 40.42 3.34
573 577 2.354003 GGTTACTCCCCACGAAATCGAA 60.354 50.000 10.16 0.00 43.02 3.71
574 578 2.928116 GTTACTCCCCACGAAATCGAAG 59.072 50.000 10.16 1.72 43.02 3.79
575 579 0.974383 ACTCCCCACGAAATCGAAGT 59.026 50.000 10.16 2.51 43.02 3.01
576 580 2.173519 ACTCCCCACGAAATCGAAGTA 58.826 47.619 10.16 0.00 43.02 2.24
577 581 2.165845 ACTCCCCACGAAATCGAAGTAG 59.834 50.000 10.16 3.21 43.02 2.57
578 582 1.134907 TCCCCACGAAATCGAAGTAGC 60.135 52.381 10.16 0.00 43.02 3.58
579 583 1.404986 CCCCACGAAATCGAAGTAGCA 60.405 52.381 10.16 0.00 43.02 3.49
580 584 2.550978 CCCACGAAATCGAAGTAGCAT 58.449 47.619 10.16 0.00 43.02 3.79
581 585 2.285220 CCCACGAAATCGAAGTAGCATG 59.715 50.000 10.16 0.00 43.02 4.06
582 586 2.930040 CCACGAAATCGAAGTAGCATGT 59.070 45.455 10.16 0.00 43.02 3.21
583 587 3.242091 CCACGAAATCGAAGTAGCATGTG 60.242 47.826 10.16 0.00 43.02 3.21
584 588 3.367932 CACGAAATCGAAGTAGCATGTGT 59.632 43.478 10.16 0.00 43.02 3.72
585 589 3.367932 ACGAAATCGAAGTAGCATGTGTG 59.632 43.478 10.16 0.00 43.02 3.82
586 590 3.367932 CGAAATCGAAGTAGCATGTGTGT 59.632 43.478 0.00 0.00 43.02 3.72
587 591 4.561213 CGAAATCGAAGTAGCATGTGTGTA 59.439 41.667 0.00 0.00 43.02 2.90
588 592 5.232202 CGAAATCGAAGTAGCATGTGTGTAT 59.768 40.000 0.00 0.00 43.02 2.29
589 593 5.973651 AATCGAAGTAGCATGTGTGTATG 57.026 39.130 0.00 0.00 0.00 2.39
590 594 3.780902 TCGAAGTAGCATGTGTGTATGG 58.219 45.455 0.00 0.00 0.00 2.74
591 595 2.285220 CGAAGTAGCATGTGTGTATGGC 59.715 50.000 0.00 0.00 0.00 4.40
592 596 3.270027 GAAGTAGCATGTGTGTATGGCA 58.730 45.455 0.00 0.00 0.00 4.92
593 597 3.348647 AGTAGCATGTGTGTATGGCAA 57.651 42.857 0.00 0.00 0.00 4.52
594 598 3.889815 AGTAGCATGTGTGTATGGCAAT 58.110 40.909 0.00 0.00 0.00 3.56
595 599 3.879295 AGTAGCATGTGTGTATGGCAATC 59.121 43.478 0.00 0.00 0.00 2.67
596 600 2.725637 AGCATGTGTGTATGGCAATCA 58.274 42.857 0.00 0.00 0.00 2.57
597 601 2.686405 AGCATGTGTGTATGGCAATCAG 59.314 45.455 0.00 0.00 0.00 2.90
598 602 2.797087 GCATGTGTGTATGGCAATCAGC 60.797 50.000 0.00 0.00 44.65 4.26
609 613 3.826637 CAATCAGCTTGCTTTGGGG 57.173 52.632 0.00 0.00 0.00 4.96
635 639 6.711579 ACCGTACAAAATTTAGCATATGTCG 58.288 36.000 4.29 0.00 0.00 4.35
658 662 6.804295 TCGAAAATGTAATGATTTTGGTTCGG 59.196 34.615 0.00 0.00 36.00 4.30
661 665 8.669946 AAAATGTAATGATTTTGGTTCGGTTT 57.330 26.923 0.00 0.00 34.84 3.27
669 673 6.908825 TGATTTTGGTTCGGTTTAGATGAAG 58.091 36.000 0.00 0.00 0.00 3.02
674 678 5.989477 TGGTTCGGTTTAGATGAAGATCAT 58.011 37.500 0.00 0.00 40.34 2.45
682 686 7.223971 CGGTTTAGATGAAGATCATTCGGTTTA 59.776 37.037 0.00 0.00 37.20 2.01
699 703 6.791303 TCGGTTTACATAAAATTCATCTGGC 58.209 36.000 0.00 0.00 0.00 4.85
720 724 8.469200 TCTGGCTTATTCAAATCCAATTTACAG 58.531 33.333 0.00 0.00 0.00 2.74
722 726 8.034215 TGGCTTATTCAAATCCAATTTACAGTG 58.966 33.333 0.00 0.00 0.00 3.66
757 761 2.124151 ATGGCCGGCTTCCACATC 60.124 61.111 28.56 7.32 36.26 3.06
758 762 2.891941 GATGGCCGGCTTCCACATCA 62.892 60.000 27.54 16.56 38.20 3.07
759 763 2.124151 GGCCGGCTTCCACATCAT 60.124 61.111 28.56 0.00 0.00 2.45
761 765 1.750399 GCCGGCTTCCACATCATGT 60.750 57.895 22.15 0.00 0.00 3.21
762 766 1.718757 GCCGGCTTCCACATCATGTC 61.719 60.000 22.15 0.00 0.00 3.06
763 767 1.097547 CCGGCTTCCACATCATGTCC 61.098 60.000 0.00 0.00 0.00 4.02
764 768 1.431488 CGGCTTCCACATCATGTCCG 61.431 60.000 0.82 0.82 0.00 4.79
765 769 1.718757 GGCTTCCACATCATGTCCGC 61.719 60.000 0.00 0.00 0.00 5.54
766 770 1.026182 GCTTCCACATCATGTCCGCA 61.026 55.000 0.00 0.00 0.00 5.69
767 771 1.012086 CTTCCACATCATGTCCGCAG 58.988 55.000 0.00 0.00 0.00 5.18
768 772 0.612744 TTCCACATCATGTCCGCAGA 59.387 50.000 0.00 0.00 0.00 4.26
769 773 0.108186 TCCACATCATGTCCGCAGAC 60.108 55.000 0.00 0.00 43.83 3.51
777 781 2.354305 GTCCGCAGACACGTTCGT 60.354 61.111 0.00 0.00 42.99 3.85
778 782 2.354188 TCCGCAGACACGTTCGTG 60.354 61.111 21.13 21.13 41.47 4.35
779 783 2.354188 CCGCAGACACGTTCGTGA 60.354 61.111 27.77 0.00 39.25 4.35
780 784 1.733041 CCGCAGACACGTTCGTGAT 60.733 57.895 27.77 14.93 39.25 3.06
788 792 0.802222 CACGTTCGTGATCGGATGCT 60.802 55.000 18.64 0.00 38.30 3.79
1116 1127 3.081061 TGCTTATCCGCTTCATGTTGTT 58.919 40.909 0.00 0.00 0.00 2.83
1277 1288 6.793349 ACCAACTATAGTGACAGTTCGATAC 58.207 40.000 6.06 0.00 32.72 2.24
1289 1300 4.637534 ACAGTTCGATACGCTAGTCCTTAA 59.362 41.667 0.00 0.00 0.00 1.85
1376 1387 0.179121 CGAATCCGGTGGTCGATTCA 60.179 55.000 15.83 0.00 42.43 2.57
1722 1733 3.743911 AGACAACGTACAATTCGATGCAA 59.256 39.130 0.00 0.00 35.19 4.08
1817 1828 3.426568 GGGTCTTGCAGCGTCAGC 61.427 66.667 0.00 0.00 45.58 4.26
1881 1892 2.287308 TGCAACGGGAGAAAAACAATCG 60.287 45.455 0.00 0.00 0.00 3.34
3164 3193 5.255687 ACATATCTTTGTCATCAACCAGCA 58.744 37.500 0.00 0.00 32.93 4.41
4378 4445 4.821589 GAGAGGTTGGAGCGGCGG 62.822 72.222 9.78 0.00 0.00 6.13
4394 4461 3.785859 GGCAGGGCATGGTCGAGA 61.786 66.667 0.00 0.00 0.00 4.04
4395 4462 2.202987 GCAGGGCATGGTCGAGAG 60.203 66.667 0.00 0.00 0.00 3.20
4396 4463 2.503061 CAGGGCATGGTCGAGAGG 59.497 66.667 0.00 0.00 0.00 3.69
4397 4464 2.039624 AGGGCATGGTCGAGAGGT 59.960 61.111 0.00 0.00 0.00 3.85
4398 4465 1.613630 AGGGCATGGTCGAGAGGTT 60.614 57.895 0.00 0.00 0.00 3.50
4399 4466 1.450312 GGGCATGGTCGAGAGGTTG 60.450 63.158 0.00 0.00 0.00 3.77
4400 4467 1.450312 GGCATGGTCGAGAGGTTGG 60.450 63.158 0.00 0.00 0.00 3.77
4401 4468 1.296715 GCATGGTCGAGAGGTTGGT 59.703 57.895 0.00 0.00 0.00 3.67
4402 4469 0.321653 GCATGGTCGAGAGGTTGGTT 60.322 55.000 0.00 0.00 0.00 3.67
4403 4470 1.066430 GCATGGTCGAGAGGTTGGTTA 60.066 52.381 0.00 0.00 0.00 2.85
4404 4471 2.893637 CATGGTCGAGAGGTTGGTTAG 58.106 52.381 0.00 0.00 0.00 2.34
4405 4472 1.263356 TGGTCGAGAGGTTGGTTAGG 58.737 55.000 0.00 0.00 0.00 2.69
4406 4473 0.108281 GGTCGAGAGGTTGGTTAGGC 60.108 60.000 0.00 0.00 0.00 3.93
4407 4474 0.458025 GTCGAGAGGTTGGTTAGGCG 60.458 60.000 0.00 0.00 0.00 5.52
4408 4475 0.609957 TCGAGAGGTTGGTTAGGCGA 60.610 55.000 0.00 0.00 0.00 5.54
4409 4476 0.179134 CGAGAGGTTGGTTAGGCGAG 60.179 60.000 0.00 0.00 0.00 5.03
4410 4477 1.183549 GAGAGGTTGGTTAGGCGAGA 58.816 55.000 0.00 0.00 0.00 4.04
4411 4478 1.135333 GAGAGGTTGGTTAGGCGAGAG 59.865 57.143 0.00 0.00 0.00 3.20
4412 4479 1.183549 GAGGTTGGTTAGGCGAGAGA 58.816 55.000 0.00 0.00 0.00 3.10
4413 4480 1.135333 GAGGTTGGTTAGGCGAGAGAG 59.865 57.143 0.00 0.00 0.00 3.20
4414 4481 1.183549 GGTTGGTTAGGCGAGAGAGA 58.816 55.000 0.00 0.00 0.00 3.10
4415 4482 1.135333 GGTTGGTTAGGCGAGAGAGAG 59.865 57.143 0.00 0.00 0.00 3.20
4416 4483 2.093106 GTTGGTTAGGCGAGAGAGAGA 58.907 52.381 0.00 0.00 0.00 3.10
4417 4484 2.045561 TGGTTAGGCGAGAGAGAGAG 57.954 55.000 0.00 0.00 0.00 3.20
4418 4485 1.314730 GGTTAGGCGAGAGAGAGAGG 58.685 60.000 0.00 0.00 0.00 3.69
4419 4486 1.409101 GGTTAGGCGAGAGAGAGAGGT 60.409 57.143 0.00 0.00 0.00 3.85
4420 4487 1.673920 GTTAGGCGAGAGAGAGAGGTG 59.326 57.143 0.00 0.00 0.00 4.00
4421 4488 0.913205 TAGGCGAGAGAGAGAGGTGT 59.087 55.000 0.00 0.00 0.00 4.16
4422 4489 0.679640 AGGCGAGAGAGAGAGGTGTG 60.680 60.000 0.00 0.00 0.00 3.82
4423 4490 1.138671 GCGAGAGAGAGAGGTGTGC 59.861 63.158 0.00 0.00 0.00 4.57
4424 4491 1.427419 CGAGAGAGAGAGGTGTGCG 59.573 63.158 0.00 0.00 0.00 5.34
4425 4492 1.806568 GAGAGAGAGAGGTGTGCGG 59.193 63.158 0.00 0.00 0.00 5.69
4426 4493 1.662438 GAGAGAGAGAGGTGTGCGGG 61.662 65.000 0.00 0.00 0.00 6.13
4427 4494 1.679305 GAGAGAGAGGTGTGCGGGA 60.679 63.158 0.00 0.00 0.00 5.14
4428 4495 1.662438 GAGAGAGAGGTGTGCGGGAG 61.662 65.000 0.00 0.00 0.00 4.30
4429 4496 1.679305 GAGAGAGGTGTGCGGGAGA 60.679 63.158 0.00 0.00 0.00 3.71
4430 4497 1.662438 GAGAGAGGTGTGCGGGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
4431 4498 1.679305 GAGAGGTGTGCGGGAGAGA 60.679 63.158 0.00 0.00 0.00 3.10
4432 4499 1.662438 GAGAGGTGTGCGGGAGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
4433 4500 2.681778 AGGTGTGCGGGAGAGAGG 60.682 66.667 0.00 0.00 0.00 3.69
4434 4501 2.997897 GGTGTGCGGGAGAGAGGT 60.998 66.667 0.00 0.00 0.00 3.85
4435 4502 2.262915 GTGTGCGGGAGAGAGGTG 59.737 66.667 0.00 0.00 0.00 4.00
4436 4503 2.203640 TGTGCGGGAGAGAGGTGT 60.204 61.111 0.00 0.00 0.00 4.16
4437 4504 2.262915 GTGCGGGAGAGAGGTGTG 59.737 66.667 0.00 0.00 0.00 3.82
4438 4505 3.695606 TGCGGGAGAGAGGTGTGC 61.696 66.667 0.00 0.00 0.00 4.57
4439 4506 4.803426 GCGGGAGAGAGGTGTGCG 62.803 72.222 0.00 0.00 0.00 5.34
4440 4507 4.135153 CGGGAGAGAGGTGTGCGG 62.135 72.222 0.00 0.00 0.00 5.69
4441 4508 3.775654 GGGAGAGAGGTGTGCGGG 61.776 72.222 0.00 0.00 0.00 6.13
4442 4509 2.680352 GGAGAGAGGTGTGCGGGA 60.680 66.667 0.00 0.00 0.00 5.14
4443 4510 2.716017 GGAGAGAGGTGTGCGGGAG 61.716 68.421 0.00 0.00 0.00 4.30
4444 4511 1.679305 GAGAGAGGTGTGCGGGAGA 60.679 63.158 0.00 0.00 0.00 3.71
4445 4512 1.662438 GAGAGAGGTGTGCGGGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
4446 4513 1.679305 GAGAGGTGTGCGGGAGAGA 60.679 63.158 0.00 0.00 0.00 3.10
4447 4514 1.662438 GAGAGGTGTGCGGGAGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
4448 4515 2.681778 AGGTGTGCGGGAGAGAGG 60.682 66.667 0.00 0.00 0.00 3.69
4449 4516 4.459089 GGTGTGCGGGAGAGAGGC 62.459 72.222 0.00 0.00 0.00 4.70
4450 4517 4.803426 GTGTGCGGGAGAGAGGCG 62.803 72.222 0.00 0.00 0.00 5.52
4452 4519 4.803426 GTGCGGGAGAGAGGCGTG 62.803 72.222 0.00 0.00 0.00 5.34
4455 4522 3.827898 CGGGAGAGAGGCGTGGTC 61.828 72.222 0.00 0.00 0.00 4.02
4456 4523 3.827898 GGGAGAGAGGCGTGGTCG 61.828 72.222 0.00 0.00 40.37 4.79
4457 4524 2.750637 GGAGAGAGGCGTGGTCGA 60.751 66.667 0.00 0.00 39.71 4.20
4458 4525 2.766400 GGAGAGAGGCGTGGTCGAG 61.766 68.421 0.00 0.00 39.71 4.04
4459 4526 3.404141 GAGAGAGGCGTGGTCGAGC 62.404 68.421 7.89 7.89 39.71 5.03
4460 4527 4.838486 GAGAGGCGTGGTCGAGCG 62.838 72.222 10.46 4.89 39.71 5.03
4476 4543 4.838486 CGGGCGTGCGAGAGAGAC 62.838 72.222 0.00 0.00 0.00 3.36
4477 4544 3.749064 GGGCGTGCGAGAGAGACA 61.749 66.667 0.00 0.00 0.00 3.41
4478 4545 2.492090 GGCGTGCGAGAGAGACAT 59.508 61.111 0.00 0.00 0.00 3.06
4479 4546 1.875813 GGCGTGCGAGAGAGACATG 60.876 63.158 0.00 0.00 0.00 3.21
4480 4547 2.512301 GCGTGCGAGAGAGACATGC 61.512 63.158 0.00 0.00 38.96 4.06
4481 4548 2.220224 CGTGCGAGAGAGACATGCG 61.220 63.158 0.00 0.00 0.00 4.73
4482 4549 1.137614 GTGCGAGAGAGACATGCGA 59.862 57.895 0.00 0.00 0.00 5.10
4483 4550 0.865218 GTGCGAGAGAGACATGCGAG 60.865 60.000 0.00 0.00 0.00 5.03
4484 4551 1.026718 TGCGAGAGAGACATGCGAGA 61.027 55.000 0.00 0.00 0.00 4.04
4485 4552 0.316937 GCGAGAGAGACATGCGAGAG 60.317 60.000 0.00 0.00 0.00 3.20
4486 4553 1.294857 CGAGAGAGACATGCGAGAGA 58.705 55.000 0.00 0.00 0.00 3.10
4487 4554 1.261354 CGAGAGAGACATGCGAGAGAG 59.739 57.143 0.00 0.00 0.00 3.20
4488 4555 1.603802 GAGAGAGACATGCGAGAGAGG 59.396 57.143 0.00 0.00 0.00 3.69
4489 4556 0.667993 GAGAGACATGCGAGAGAGGG 59.332 60.000 0.00 0.00 0.00 4.30
4490 4557 0.754957 AGAGACATGCGAGAGAGGGG 60.755 60.000 0.00 0.00 0.00 4.79
4491 4558 2.107953 GACATGCGAGAGAGGGGC 59.892 66.667 0.00 0.00 0.00 5.80
4492 4559 3.781770 GACATGCGAGAGAGGGGCG 62.782 68.421 0.00 0.00 0.00 6.13
4493 4560 3.531207 CATGCGAGAGAGGGGCGA 61.531 66.667 0.00 0.00 0.00 5.54
4494 4561 3.222855 ATGCGAGAGAGGGGCGAG 61.223 66.667 0.00 0.00 0.00 5.03
4497 4564 3.898509 CGAGAGAGGGGCGAGCTG 61.899 72.222 0.00 0.00 0.00 4.24
4498 4565 2.757917 GAGAGAGGGGCGAGCTGT 60.758 66.667 0.00 0.00 0.00 4.40
4499 4566 3.073735 AGAGAGGGGCGAGCTGTG 61.074 66.667 0.00 0.00 0.00 3.66
4500 4567 4.154347 GAGAGGGGCGAGCTGTGG 62.154 72.222 0.00 0.00 0.00 4.17
4505 4572 4.468689 GGGCGAGCTGTGGGGTAC 62.469 72.222 0.00 0.00 0.00 3.34
4518 4585 3.556817 GGGTACCGGGTTTGGTTAG 57.443 57.895 4.31 0.00 43.56 2.34
4519 4586 0.677731 GGGTACCGGGTTTGGTTAGC 60.678 60.000 4.31 0.00 43.56 3.09
4520 4587 1.020861 GGTACCGGGTTTGGTTAGCG 61.021 60.000 4.31 0.00 43.56 4.26
4521 4588 0.037419 GTACCGGGTTTGGTTAGCGA 60.037 55.000 4.31 0.00 43.56 4.93
4522 4589 0.247185 TACCGGGTTTGGTTAGCGAG 59.753 55.000 4.31 0.00 43.56 5.03
4523 4590 1.004200 CCGGGTTTGGTTAGCGAGT 60.004 57.895 0.00 0.00 0.00 4.18
4524 4591 0.247185 CCGGGTTTGGTTAGCGAGTA 59.753 55.000 0.00 0.00 0.00 2.59
4525 4592 1.636988 CGGGTTTGGTTAGCGAGTAG 58.363 55.000 0.00 0.00 0.00 2.57
4526 4593 1.203052 CGGGTTTGGTTAGCGAGTAGA 59.797 52.381 0.00 0.00 0.00 2.59
4527 4594 2.159142 CGGGTTTGGTTAGCGAGTAGAT 60.159 50.000 0.00 0.00 0.00 1.98
4528 4595 3.067180 CGGGTTTGGTTAGCGAGTAGATA 59.933 47.826 0.00 0.00 0.00 1.98
4529 4596 4.618965 GGGTTTGGTTAGCGAGTAGATAG 58.381 47.826 0.00 0.00 0.00 2.08
4530 4597 4.501058 GGGTTTGGTTAGCGAGTAGATAGG 60.501 50.000 0.00 0.00 0.00 2.57
4531 4598 4.501058 GGTTTGGTTAGCGAGTAGATAGGG 60.501 50.000 0.00 0.00 0.00 3.53
4532 4599 3.589951 TGGTTAGCGAGTAGATAGGGT 57.410 47.619 0.00 0.00 0.00 4.34
4533 4600 4.712051 TGGTTAGCGAGTAGATAGGGTA 57.288 45.455 0.00 0.00 0.00 3.69
4534 4601 5.052693 TGGTTAGCGAGTAGATAGGGTAA 57.947 43.478 0.00 0.00 0.00 2.85
4535 4602 5.638133 TGGTTAGCGAGTAGATAGGGTAAT 58.362 41.667 0.00 0.00 0.00 1.89
4536 4603 5.475909 TGGTTAGCGAGTAGATAGGGTAATG 59.524 44.000 0.00 0.00 0.00 1.90
4537 4604 5.105837 GGTTAGCGAGTAGATAGGGTAATGG 60.106 48.000 0.00 0.00 0.00 3.16
4538 4605 2.826725 AGCGAGTAGATAGGGTAATGGC 59.173 50.000 0.00 0.00 0.00 4.40
4539 4606 2.561419 GCGAGTAGATAGGGTAATGGCA 59.439 50.000 0.00 0.00 0.00 4.92
4540 4607 3.195825 GCGAGTAGATAGGGTAATGGCAT 59.804 47.826 0.00 0.00 0.00 4.40
4541 4608 4.748892 CGAGTAGATAGGGTAATGGCATG 58.251 47.826 0.00 0.00 0.00 4.06
4542 4609 4.462834 CGAGTAGATAGGGTAATGGCATGA 59.537 45.833 0.00 0.00 0.00 3.07
4543 4610 5.127845 CGAGTAGATAGGGTAATGGCATGAT 59.872 44.000 0.00 0.00 0.00 2.45
4544 4611 6.305272 AGTAGATAGGGTAATGGCATGATG 57.695 41.667 0.00 0.00 0.00 3.07
4545 4612 4.581309 AGATAGGGTAATGGCATGATGG 57.419 45.455 0.00 0.00 0.00 3.51
4546 4613 3.267812 AGATAGGGTAATGGCATGATGGG 59.732 47.826 0.00 0.00 0.00 4.00
4547 4614 1.234806 AGGGTAATGGCATGATGGGT 58.765 50.000 0.00 0.00 0.00 4.51
4548 4615 2.427872 AGGGTAATGGCATGATGGGTA 58.572 47.619 0.00 0.00 0.00 3.69
4549 4616 2.788807 AGGGTAATGGCATGATGGGTAA 59.211 45.455 0.00 0.00 0.00 2.85
4550 4617 3.402366 AGGGTAATGGCATGATGGGTAAT 59.598 43.478 0.00 0.00 0.00 1.89
4551 4618 4.140710 AGGGTAATGGCATGATGGGTAATT 60.141 41.667 0.00 0.00 0.00 1.40
4552 4619 5.075761 AGGGTAATGGCATGATGGGTAATTA 59.924 40.000 0.00 0.00 0.00 1.40
4553 4620 5.777732 GGGTAATGGCATGATGGGTAATTAA 59.222 40.000 0.00 0.00 0.00 1.40
4554 4621 6.268847 GGGTAATGGCATGATGGGTAATTAAA 59.731 38.462 0.00 0.00 0.00 1.52
4555 4622 7.378181 GGTAATGGCATGATGGGTAATTAAAG 58.622 38.462 0.00 0.00 0.00 1.85
4556 4623 4.935352 TGGCATGATGGGTAATTAAAGC 57.065 40.909 0.00 0.00 0.00 3.51
4557 4624 3.317711 TGGCATGATGGGTAATTAAAGCG 59.682 43.478 0.00 0.00 0.00 4.68
4558 4625 3.317993 GGCATGATGGGTAATTAAAGCGT 59.682 43.478 0.00 0.00 0.00 5.07
4559 4626 4.517453 GGCATGATGGGTAATTAAAGCGTA 59.483 41.667 0.00 0.00 0.00 4.42
4560 4627 5.009210 GGCATGATGGGTAATTAAAGCGTAA 59.991 40.000 0.00 0.00 0.00 3.18
4561 4628 6.460399 GGCATGATGGGTAATTAAAGCGTAAA 60.460 38.462 0.00 0.00 0.00 2.01
4562 4629 6.975772 GCATGATGGGTAATTAAAGCGTAAAA 59.024 34.615 0.00 0.00 0.00 1.52
4563 4630 7.651704 GCATGATGGGTAATTAAAGCGTAAAAT 59.348 33.333 0.00 0.00 0.00 1.82
4582 4649 8.863049 CGTAAAATACGTTTAGTATGTTGGAGT 58.137 33.333 0.00 0.00 44.78 3.85
4583 4650 9.962759 GTAAAATACGTTTAGTATGTTGGAGTG 57.037 33.333 0.00 0.00 44.78 3.51
4584 4651 8.836268 AAAATACGTTTAGTATGTTGGAGTGA 57.164 30.769 0.00 0.00 44.78 3.41
4585 4652 9.444600 AAAATACGTTTAGTATGTTGGAGTGAT 57.555 29.630 0.00 0.00 44.78 3.06
4586 4653 8.420374 AATACGTTTAGTATGTTGGAGTGATG 57.580 34.615 0.00 0.00 44.78 3.07
4587 4654 5.790593 ACGTTTAGTATGTTGGAGTGATGT 58.209 37.500 0.00 0.00 0.00 3.06
4588 4655 6.927416 ACGTTTAGTATGTTGGAGTGATGTA 58.073 36.000 0.00 0.00 0.00 2.29
4589 4656 7.033791 ACGTTTAGTATGTTGGAGTGATGTAG 58.966 38.462 0.00 0.00 0.00 2.74
4590 4657 7.094075 ACGTTTAGTATGTTGGAGTGATGTAGA 60.094 37.037 0.00 0.00 0.00 2.59
4591 4658 7.220300 CGTTTAGTATGTTGGAGTGATGTAGAC 59.780 40.741 0.00 0.00 0.00 2.59
4592 4659 5.599999 AGTATGTTGGAGTGATGTAGACC 57.400 43.478 0.00 0.00 0.00 3.85
4593 4660 5.023452 AGTATGTTGGAGTGATGTAGACCA 58.977 41.667 0.00 0.00 0.00 4.02
4594 4661 5.663106 AGTATGTTGGAGTGATGTAGACCAT 59.337 40.000 0.00 0.00 36.13 3.55
4595 4662 4.908601 TGTTGGAGTGATGTAGACCATT 57.091 40.909 0.00 0.00 32.56 3.16
4596 4663 6.560003 ATGTTGGAGTGATGTAGACCATTA 57.440 37.500 0.00 0.00 32.56 1.90
4597 4664 5.977635 TGTTGGAGTGATGTAGACCATTAG 58.022 41.667 0.00 0.00 32.56 1.73
4598 4665 5.719563 TGTTGGAGTGATGTAGACCATTAGA 59.280 40.000 0.00 0.00 32.56 2.10
4599 4666 6.384015 TGTTGGAGTGATGTAGACCATTAGAT 59.616 38.462 0.00 0.00 32.56 1.98
4600 4667 7.092891 TGTTGGAGTGATGTAGACCATTAGATT 60.093 37.037 0.00 0.00 32.56 2.40
4601 4668 8.421784 GTTGGAGTGATGTAGACCATTAGATTA 58.578 37.037 0.00 0.00 32.56 1.75
4602 4669 7.952671 TGGAGTGATGTAGACCATTAGATTAC 58.047 38.462 0.00 0.00 32.56 1.89
4603 4670 7.563556 TGGAGTGATGTAGACCATTAGATTACA 59.436 37.037 0.00 0.00 32.56 2.41
4604 4671 8.085296 GGAGTGATGTAGACCATTAGATTACAG 58.915 40.741 0.00 0.00 32.56 2.74
4605 4672 7.957002 AGTGATGTAGACCATTAGATTACAGG 58.043 38.462 0.00 0.00 32.56 4.00
4606 4673 7.015682 AGTGATGTAGACCATTAGATTACAGGG 59.984 40.741 0.00 0.00 32.56 4.45
4607 4674 6.844388 TGATGTAGACCATTAGATTACAGGGT 59.156 38.462 0.00 0.00 32.56 4.34
4608 4675 7.347222 TGATGTAGACCATTAGATTACAGGGTT 59.653 37.037 0.00 0.00 32.56 4.11
4609 4676 7.120923 TGTAGACCATTAGATTACAGGGTTC 57.879 40.000 0.00 0.00 0.00 3.62
4610 4677 5.277857 AGACCATTAGATTACAGGGTTCG 57.722 43.478 0.00 0.00 0.00 3.95
4611 4678 4.960469 AGACCATTAGATTACAGGGTTCGA 59.040 41.667 0.00 0.00 0.00 3.71
4612 4679 5.602978 AGACCATTAGATTACAGGGTTCGAT 59.397 40.000 0.00 0.00 0.00 3.59
4613 4680 5.611374 ACCATTAGATTACAGGGTTCGATG 58.389 41.667 0.00 0.00 0.00 3.84
4614 4681 4.997395 CCATTAGATTACAGGGTTCGATGG 59.003 45.833 0.00 0.00 0.00 3.51
4615 4682 5.221641 CCATTAGATTACAGGGTTCGATGGA 60.222 44.000 0.00 0.00 33.51 3.41
4616 4683 6.467677 CATTAGATTACAGGGTTCGATGGAT 58.532 40.000 0.00 0.00 0.00 3.41
4617 4684 7.310423 CCATTAGATTACAGGGTTCGATGGATA 60.310 40.741 0.00 0.00 33.51 2.59
4618 4685 5.730296 AGATTACAGGGTTCGATGGATAG 57.270 43.478 0.00 0.00 0.00 2.08
4619 4686 4.528596 AGATTACAGGGTTCGATGGATAGG 59.471 45.833 0.00 0.00 0.00 2.57
4620 4687 2.471815 ACAGGGTTCGATGGATAGGA 57.528 50.000 0.00 0.00 0.00 2.94
4621 4688 2.977808 ACAGGGTTCGATGGATAGGAT 58.022 47.619 0.00 0.00 0.00 3.24
4622 4689 2.634940 ACAGGGTTCGATGGATAGGATG 59.365 50.000 0.00 0.00 0.00 3.51
4623 4690 2.899900 CAGGGTTCGATGGATAGGATGA 59.100 50.000 0.00 0.00 0.00 2.92
4624 4691 3.517100 CAGGGTTCGATGGATAGGATGAT 59.483 47.826 0.00 0.00 0.00 2.45
4625 4692 4.019860 CAGGGTTCGATGGATAGGATGATT 60.020 45.833 0.00 0.00 0.00 2.57
4626 4693 4.599241 AGGGTTCGATGGATAGGATGATTT 59.401 41.667 0.00 0.00 0.00 2.17
4627 4694 4.697352 GGGTTCGATGGATAGGATGATTTG 59.303 45.833 0.00 0.00 0.00 2.32
4628 4695 5.513094 GGGTTCGATGGATAGGATGATTTGA 60.513 44.000 0.00 0.00 0.00 2.69
4629 4696 6.176183 GGTTCGATGGATAGGATGATTTGAT 58.824 40.000 0.00 0.00 0.00 2.57
4630 4697 6.656693 GGTTCGATGGATAGGATGATTTGATT 59.343 38.462 0.00 0.00 0.00 2.57
4631 4698 7.148340 GGTTCGATGGATAGGATGATTTGATTC 60.148 40.741 0.00 0.00 0.00 2.52
4632 4699 7.250032 TCGATGGATAGGATGATTTGATTCT 57.750 36.000 0.00 0.00 0.00 2.40
4633 4700 7.326454 TCGATGGATAGGATGATTTGATTCTC 58.674 38.462 0.00 0.00 0.00 2.87
4634 4701 6.538021 CGATGGATAGGATGATTTGATTCTCC 59.462 42.308 0.00 0.00 0.00 3.71
4635 4702 5.798132 TGGATAGGATGATTTGATTCTCCG 58.202 41.667 0.00 0.00 0.00 4.63
4636 4703 4.633565 GGATAGGATGATTTGATTCTCCGC 59.366 45.833 0.00 0.00 0.00 5.54
4637 4704 2.856222 AGGATGATTTGATTCTCCGCC 58.144 47.619 0.00 0.00 0.00 6.13
4638 4705 1.882623 GGATGATTTGATTCTCCGCCC 59.117 52.381 0.00 0.00 0.00 6.13
4639 4706 2.487986 GGATGATTTGATTCTCCGCCCT 60.488 50.000 0.00 0.00 0.00 5.19
4640 4707 2.332063 TGATTTGATTCTCCGCCCTC 57.668 50.000 0.00 0.00 0.00 4.30
4641 4708 1.839994 TGATTTGATTCTCCGCCCTCT 59.160 47.619 0.00 0.00 0.00 3.69
4642 4709 2.158900 TGATTTGATTCTCCGCCCTCTC 60.159 50.000 0.00 0.00 0.00 3.20
4643 4710 1.573108 TTTGATTCTCCGCCCTCTCT 58.427 50.000 0.00 0.00 0.00 3.10
4644 4711 1.115467 TTGATTCTCCGCCCTCTCTC 58.885 55.000 0.00 0.00 0.00 3.20
4645 4712 0.260230 TGATTCTCCGCCCTCTCTCT 59.740 55.000 0.00 0.00 0.00 3.10
4646 4713 0.958822 GATTCTCCGCCCTCTCTCTC 59.041 60.000 0.00 0.00 0.00 3.20
4647 4714 0.555769 ATTCTCCGCCCTCTCTCTCT 59.444 55.000 0.00 0.00 0.00 3.10
4648 4715 0.333312 TTCTCCGCCCTCTCTCTCTT 59.667 55.000 0.00 0.00 0.00 2.85
4649 4716 0.333312 TCTCCGCCCTCTCTCTCTTT 59.667 55.000 0.00 0.00 0.00 2.52
4650 4717 1.190643 CTCCGCCCTCTCTCTCTTTT 58.809 55.000 0.00 0.00 0.00 2.27
4651 4718 2.025226 TCTCCGCCCTCTCTCTCTTTTA 60.025 50.000 0.00 0.00 0.00 1.52
4652 4719 2.962421 CTCCGCCCTCTCTCTCTTTTAT 59.038 50.000 0.00 0.00 0.00 1.40
4653 4720 4.141228 TCTCCGCCCTCTCTCTCTTTTATA 60.141 45.833 0.00 0.00 0.00 0.98
4654 4721 4.145807 TCCGCCCTCTCTCTCTTTTATAG 58.854 47.826 0.00 0.00 0.00 1.31
4655 4722 3.892588 CCGCCCTCTCTCTCTTTTATAGT 59.107 47.826 0.00 0.00 0.00 2.12
4656 4723 4.261825 CCGCCCTCTCTCTCTTTTATAGTG 60.262 50.000 0.00 0.00 0.00 2.74
4657 4724 4.261825 CGCCCTCTCTCTCTTTTATAGTGG 60.262 50.000 0.00 0.00 0.00 4.00
4658 4725 4.651962 GCCCTCTCTCTCTTTTATAGTGGT 59.348 45.833 0.00 0.00 0.00 4.16
4659 4726 5.834204 GCCCTCTCTCTCTTTTATAGTGGTA 59.166 44.000 0.00 0.00 0.00 3.25
4660 4727 6.015772 GCCCTCTCTCTCTTTTATAGTGGTAG 60.016 46.154 0.00 0.00 0.00 3.18
4661 4728 7.064229 CCCTCTCTCTCTTTTATAGTGGTAGT 58.936 42.308 0.00 0.00 0.00 2.73
4662 4729 8.219178 CCCTCTCTCTCTTTTATAGTGGTAGTA 58.781 40.741 0.00 0.00 0.00 1.82
4663 4730 9.280174 CCTCTCTCTCTTTTATAGTGGTAGTAG 57.720 40.741 0.00 0.00 0.00 2.57
4713 4780 6.535150 TCTTCAAATAGAATGCTAGTGTTCCG 59.465 38.462 5.86 0.00 35.25 4.30
4808 4876 0.035739 TACCGGAGCAACAACCTTCC 59.964 55.000 9.46 0.00 0.00 3.46
4819 4887 1.002134 AACCTTCCTGCCATGGACG 60.002 57.895 18.40 4.66 35.58 4.79
4869 4937 1.737793 GGATCTGCGATTTGTCCGTTT 59.262 47.619 0.00 0.00 0.00 3.60
4976 5044 1.553704 ACATGTACTCCCTCCGTTTCC 59.446 52.381 0.00 0.00 0.00 3.13
5008 5077 8.284945 TCTGCGTATTAGGTTTCTCTTAAGTA 57.715 34.615 1.63 0.00 0.00 2.24
5143 5214 3.997021 CACATTGTCCTACACCTTGAGAC 59.003 47.826 0.00 0.00 0.00 3.36
5156 5315 6.931838 ACACCTTGAGACGATTTATCTAACA 58.068 36.000 0.00 0.00 0.00 2.41
5459 5618 3.482110 CGTAAGCTTCAACTGCAAAACAC 59.518 43.478 0.00 0.00 0.00 3.32
5530 5689 1.827344 TCAGATCACCACTGTAGCTGG 59.173 52.381 0.00 0.00 36.81 4.85
5612 5771 6.767524 TGTGAAATGTTGTAACAAGGTTCT 57.232 33.333 1.10 0.00 43.03 3.01
5623 5782 6.184789 TGTAACAAGGTTCTTTTTGGTCTCT 58.815 36.000 0.00 0.00 0.00 3.10
5669 5829 6.743575 AGGTCAATCTTGGTCGAAATTAAG 57.256 37.500 0.00 0.00 0.00 1.85
5677 5837 2.481185 TGGTCGAAATTAAGTCGTTGCC 59.519 45.455 10.20 10.94 39.52 4.52
5678 5838 2.481185 GGTCGAAATTAAGTCGTTGCCA 59.519 45.455 10.20 0.00 39.52 4.92
5748 5926 2.275318 GAAGAAGGGACGCTTCAGATG 58.725 52.381 28.01 0.00 41.69 2.90
5786 5964 8.924511 TTGTTCCTGGAAATATTATCCATCTC 57.075 34.615 11.40 0.00 45.57 2.75
5852 6033 3.906660 GACACCATCCAGTCGTTCA 57.093 52.632 0.00 0.00 0.00 3.18
5853 6034 2.163818 GACACCATCCAGTCGTTCAA 57.836 50.000 0.00 0.00 0.00 2.69
5854 6035 2.069273 GACACCATCCAGTCGTTCAAG 58.931 52.381 0.00 0.00 0.00 3.02
5989 6174 9.087424 TCGTCTCATATTTTGATTGTTACAGAG 57.913 33.333 0.00 0.00 32.72 3.35
6217 6403 1.764854 GGATCCGTGGCCCCTCTTA 60.765 63.158 0.00 0.00 0.00 2.10
6296 6482 3.083349 CCACTGCCTCCATCCCGA 61.083 66.667 0.00 0.00 0.00 5.14
6369 6555 3.358076 GAGACGACGGGGAAGGCTG 62.358 68.421 0.00 0.00 0.00 4.85
6417 6608 1.493311 GGAACGCAAGAAGACGCAG 59.507 57.895 0.00 0.00 43.62 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.295020 CCCAGATACCAAGGGACCAA 58.705 55.000 0.00 0.00 45.80 3.67
24 25 4.141711 GGAGACACTTTGCATACCCAGATA 60.142 45.833 0.00 0.00 0.00 1.98
26 27 2.027192 GGAGACACTTTGCATACCCAGA 60.027 50.000 0.00 0.00 0.00 3.86
30 31 0.727398 GCGGAGACACTTTGCATACC 59.273 55.000 0.00 0.00 0.00 2.73
44 45 2.366533 TGACTACTACCTCAAGCGGAG 58.633 52.381 1.85 1.85 43.65 4.63
46 47 2.427453 ACATGACTACTACCTCAAGCGG 59.573 50.000 0.00 0.00 0.00 5.52
48 49 4.399618 TGAGACATGACTACTACCTCAAGC 59.600 45.833 0.00 0.00 0.00 4.01
56 57 6.542370 TCGAATCACATGAGACATGACTACTA 59.458 38.462 16.86 0.00 0.00 1.82
62 63 5.352293 CCTTTTCGAATCACATGAGACATGA 59.648 40.000 16.86 0.00 0.00 3.07
84 85 0.178891 TCCCTCCTTGCTCAACTCCT 60.179 55.000 0.00 0.00 0.00 3.69
111 112 0.179092 GCAAGGGCTATCGTAACCGT 60.179 55.000 0.00 0.00 36.96 4.83
117 118 1.141881 CTCGTGCAAGGGCTATCGT 59.858 57.895 0.00 0.00 41.91 3.73
124 125 3.058160 CAAGGGCTCGTGCAAGGG 61.058 66.667 12.07 0.00 41.91 3.95
125 126 2.281761 ACAAGGGCTCGTGCAAGG 60.282 61.111 12.07 0.32 41.91 3.61
126 127 0.957395 ATGACAAGGGCTCGTGCAAG 60.957 55.000 12.07 0.00 41.91 4.01
146 147 2.113139 AAGGCACCAAGTGGACCG 59.887 61.111 3.83 0.00 39.07 4.79
206 207 3.560503 ACACGGTAAACAAAATGATGCG 58.439 40.909 0.00 0.00 0.00 4.73
223 224 4.452455 AGAACCTTTGAAGCTCATTACACG 59.548 41.667 0.00 0.00 0.00 4.49
229 230 2.165998 GCCAGAACCTTTGAAGCTCAT 58.834 47.619 0.00 0.00 0.00 2.90
237 238 2.280628 GATAGACGGCCAGAACCTTTG 58.719 52.381 2.24 0.00 0.00 2.77
238 239 1.209747 GGATAGACGGCCAGAACCTTT 59.790 52.381 2.24 0.00 0.00 3.11
244 245 0.899720 AAAACGGATAGACGGCCAGA 59.100 50.000 2.24 0.00 38.39 3.86
251 252 6.371809 TTTGATGGCATAAAACGGATAGAC 57.628 37.500 5.88 0.00 0.00 2.59
270 271 9.373603 CAATCTTTCCTTTTATCATGCATTTGA 57.626 29.630 0.00 0.00 0.00 2.69
271 272 8.609176 CCAATCTTTCCTTTTATCATGCATTTG 58.391 33.333 0.00 0.00 0.00 2.32
280 281 5.300539 GGCTCCTCCAATCTTTCCTTTTATC 59.699 44.000 0.00 0.00 34.01 1.75
287 288 2.816777 AAGGCTCCTCCAATCTTTCC 57.183 50.000 0.00 0.00 37.29 3.13
292 294 2.103263 ACGTCATAAGGCTCCTCCAATC 59.897 50.000 0.00 0.00 37.29 2.67
294 296 1.568504 ACGTCATAAGGCTCCTCCAA 58.431 50.000 0.00 0.00 37.29 3.53
299 301 3.318275 TGAGACATACGTCATAAGGCTCC 59.682 47.826 0.00 0.00 45.23 4.70
302 304 4.621991 ACATGAGACATACGTCATAAGGC 58.378 43.478 0.00 0.00 45.23 4.35
318 320 3.584834 TGTTGATGTCCACGTACATGAG 58.415 45.455 8.65 0.00 40.17 2.90
410 414 6.219473 TGGCCGCAAATATATTGGTAAAATG 58.781 36.000 0.00 0.00 0.00 2.32
432 436 7.487189 GCAAAGATTTCTGTTGAGTGAATATGG 59.513 37.037 6.65 0.00 0.00 2.74
458 462 7.330946 TCGGAGTATCTTTGTGTTAGTCAAATG 59.669 37.037 0.00 0.00 34.88 2.32
537 541 5.013183 GGGAGTAACCTATGCAATATGTCCT 59.987 44.000 0.00 0.00 38.98 3.85
550 554 2.428171 CGATTTCGTGGGGAGTAACCTA 59.572 50.000 0.00 0.00 35.16 3.08
571 575 3.270027 TGCCATACACACATGCTACTTC 58.730 45.455 0.00 0.00 0.00 3.01
573 577 3.348647 TTGCCATACACACATGCTACT 57.651 42.857 0.00 0.00 0.00 2.57
574 578 3.627123 TGATTGCCATACACACATGCTAC 59.373 43.478 0.00 0.00 0.00 3.58
575 579 3.878699 CTGATTGCCATACACACATGCTA 59.121 43.478 0.00 0.00 0.00 3.49
576 580 2.686405 CTGATTGCCATACACACATGCT 59.314 45.455 0.00 0.00 0.00 3.79
577 581 2.797087 GCTGATTGCCATACACACATGC 60.797 50.000 0.00 0.00 35.15 4.06
578 582 2.686405 AGCTGATTGCCATACACACATG 59.314 45.455 0.00 0.00 44.23 3.21
579 583 3.008835 AGCTGATTGCCATACACACAT 57.991 42.857 0.00 0.00 44.23 3.21
580 584 2.488937 CAAGCTGATTGCCATACACACA 59.511 45.455 0.00 0.00 44.23 3.72
581 585 3.141002 CAAGCTGATTGCCATACACAC 57.859 47.619 0.00 0.00 44.23 3.82
591 595 0.971386 ACCCCAAAGCAAGCTGATTG 59.029 50.000 0.40 0.40 42.20 2.67
592 596 2.171003 GTACCCCAAAGCAAGCTGATT 58.829 47.619 0.00 0.00 0.00 2.57
593 597 1.616994 GGTACCCCAAAGCAAGCTGAT 60.617 52.381 0.00 0.00 0.00 2.90
594 598 0.251165 GGTACCCCAAAGCAAGCTGA 60.251 55.000 0.00 0.00 0.00 4.26
595 599 1.586154 CGGTACCCCAAAGCAAGCTG 61.586 60.000 6.25 0.00 0.00 4.24
596 600 1.303317 CGGTACCCCAAAGCAAGCT 60.303 57.895 6.25 0.00 0.00 3.74
597 601 0.321830 TACGGTACCCCAAAGCAAGC 60.322 55.000 6.25 0.00 0.00 4.01
598 602 1.270947 TGTACGGTACCCCAAAGCAAG 60.271 52.381 15.26 0.00 0.00 4.01
609 613 7.790673 CGACATATGCTAAATTTTGTACGGTAC 59.209 37.037 11.33 11.33 0.00 3.34
635 639 7.883229 ACCGAACCAAAATCATTACATTTTC 57.117 32.000 0.00 0.00 34.37 2.29
655 659 5.163447 ACCGAATGATCTTCATCTAAACCGA 60.163 40.000 0.00 0.00 35.76 4.69
658 662 8.879759 TGTAAACCGAATGATCTTCATCTAAAC 58.120 33.333 0.00 0.00 35.76 2.01
674 678 7.122055 AGCCAGATGAATTTTATGTAAACCGAA 59.878 33.333 0.00 0.00 0.00 4.30
720 724 0.807667 CCCTCGCTGTCTGCATACAC 60.808 60.000 0.00 0.00 43.06 2.90
722 726 0.390860 ATCCCTCGCTGTCTGCATAC 59.609 55.000 2.42 0.00 43.06 2.39
761 765 2.137425 ATCACGAACGTGTCTGCGGA 62.137 55.000 23.07 0.00 45.55 5.54
762 766 1.674611 GATCACGAACGTGTCTGCGG 61.675 60.000 23.07 0.00 45.55 5.69
763 767 1.696644 GATCACGAACGTGTCTGCG 59.303 57.895 23.07 1.16 45.55 5.18
764 768 1.674611 CCGATCACGAACGTGTCTGC 61.675 60.000 23.07 12.09 45.55 4.26
765 769 0.109919 TCCGATCACGAACGTGTCTG 60.110 55.000 23.07 16.32 45.55 3.51
766 770 0.809385 ATCCGATCACGAACGTGTCT 59.191 50.000 23.07 13.91 45.55 3.41
767 771 0.914551 CATCCGATCACGAACGTGTC 59.085 55.000 23.07 18.29 45.55 3.67
768 772 1.076533 GCATCCGATCACGAACGTGT 61.077 55.000 23.07 12.92 45.55 4.49
769 773 0.802222 AGCATCCGATCACGAACGTG 60.802 55.000 19.22 19.22 46.64 4.49
770 774 0.802222 CAGCATCCGATCACGAACGT 60.802 55.000 0.00 0.00 42.66 3.99
771 775 0.802222 ACAGCATCCGATCACGAACG 60.802 55.000 0.00 0.00 42.66 3.95
772 776 0.647410 CACAGCATCCGATCACGAAC 59.353 55.000 0.00 0.00 42.66 3.95
773 777 0.246360 ACACAGCATCCGATCACGAA 59.754 50.000 0.00 0.00 42.66 3.85
774 778 0.179137 GACACAGCATCCGATCACGA 60.179 55.000 0.00 0.00 42.66 4.35
775 779 0.179127 AGACACAGCATCCGATCACG 60.179 55.000 0.00 0.00 39.43 4.35
776 780 1.284657 CAGACACAGCATCCGATCAC 58.715 55.000 0.00 0.00 0.00 3.06
777 781 0.897621 ACAGACACAGCATCCGATCA 59.102 50.000 0.00 0.00 0.00 2.92
778 782 2.015736 AACAGACACAGCATCCGATC 57.984 50.000 0.00 0.00 0.00 3.69
779 783 2.479566 AAACAGACACAGCATCCGAT 57.520 45.000 0.00 0.00 0.00 4.18
780 784 3.325870 CTTAAACAGACACAGCATCCGA 58.674 45.455 0.00 0.00 0.00 4.55
788 792 2.691011 GCAAACCCCTTAAACAGACACA 59.309 45.455 0.00 0.00 0.00 3.72
1277 1288 7.690952 AATCTACCTCTATTAAGGACTAGCG 57.309 40.000 0.00 0.00 38.87 4.26
1376 1387 3.056891 CCACATTTTCAGCGGTTAATGGT 60.057 43.478 14.58 0.00 33.41 3.55
1722 1733 1.989706 ACCCGGTGTAAGTTTTGCAT 58.010 45.000 0.00 0.00 0.00 3.96
1817 1828 7.686938 CCTAGTATAAGAAACGTTTTTCGCAAG 59.313 37.037 15.89 6.61 45.15 4.01
1881 1892 4.081406 TGCTTATTGGGATGGATGTATGC 58.919 43.478 0.00 0.00 0.00 3.14
2021 2032 4.332819 GGTGAACTTTGTATGAATCCTCCG 59.667 45.833 0.00 0.00 0.00 4.63
3164 3193 6.113411 GGTTTAGCAATGTACCTCATACACT 58.887 40.000 0.00 0.00 46.65 3.55
4196 4263 4.785453 CAACCTCTCGGCCCTGCC 62.785 72.222 0.00 0.00 46.75 4.85
4273 4340 4.415150 CAGCAGCACACCCCCGAT 62.415 66.667 0.00 0.00 0.00 4.18
4355 4422 3.787001 CTCCAACCTCTCGGCCCC 61.787 72.222 0.00 0.00 0.00 5.80
4356 4423 4.475135 GCTCCAACCTCTCGGCCC 62.475 72.222 0.00 0.00 0.00 5.80
4357 4424 4.821589 CGCTCCAACCTCTCGGCC 62.822 72.222 0.00 0.00 0.00 6.13
4358 4425 4.821589 CCGCTCCAACCTCTCGGC 62.822 72.222 0.00 0.00 33.36 5.54
4359 4426 4.821589 GCCGCTCCAACCTCTCGG 62.822 72.222 0.00 0.00 42.68 4.63
4361 4428 4.821589 CCGCCGCTCCAACCTCTC 62.822 72.222 0.00 0.00 0.00 3.20
4377 4444 3.746949 CTCTCGACCATGCCCTGCC 62.747 68.421 0.00 0.00 0.00 4.85
4378 4445 2.202987 CTCTCGACCATGCCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
4379 4446 1.903877 AACCTCTCGACCATGCCCTG 61.904 60.000 0.00 0.00 0.00 4.45
4380 4447 1.613630 AACCTCTCGACCATGCCCT 60.614 57.895 0.00 0.00 0.00 5.19
4381 4448 1.450312 CAACCTCTCGACCATGCCC 60.450 63.158 0.00 0.00 0.00 5.36
4382 4449 1.450312 CCAACCTCTCGACCATGCC 60.450 63.158 0.00 0.00 0.00 4.40
4383 4450 0.321653 AACCAACCTCTCGACCATGC 60.322 55.000 0.00 0.00 0.00 4.06
4384 4451 2.418746 CCTAACCAACCTCTCGACCATG 60.419 54.545 0.00 0.00 0.00 3.66
4385 4452 1.831736 CCTAACCAACCTCTCGACCAT 59.168 52.381 0.00 0.00 0.00 3.55
4386 4453 1.263356 CCTAACCAACCTCTCGACCA 58.737 55.000 0.00 0.00 0.00 4.02
4387 4454 0.108281 GCCTAACCAACCTCTCGACC 60.108 60.000 0.00 0.00 0.00 4.79
4388 4455 0.458025 CGCCTAACCAACCTCTCGAC 60.458 60.000 0.00 0.00 0.00 4.20
4389 4456 0.609957 TCGCCTAACCAACCTCTCGA 60.610 55.000 0.00 0.00 0.00 4.04
4390 4457 0.179134 CTCGCCTAACCAACCTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
4391 4458 1.135333 CTCTCGCCTAACCAACCTCTC 59.865 57.143 0.00 0.00 0.00 3.20
4392 4459 1.187087 CTCTCGCCTAACCAACCTCT 58.813 55.000 0.00 0.00 0.00 3.69
4393 4460 1.135333 CTCTCTCGCCTAACCAACCTC 59.865 57.143 0.00 0.00 0.00 3.85
4394 4461 1.187087 CTCTCTCGCCTAACCAACCT 58.813 55.000 0.00 0.00 0.00 3.50
4395 4462 1.135333 CTCTCTCTCGCCTAACCAACC 59.865 57.143 0.00 0.00 0.00 3.77
4396 4463 2.093106 TCTCTCTCTCGCCTAACCAAC 58.907 52.381 0.00 0.00 0.00 3.77
4397 4464 2.370349 CTCTCTCTCTCGCCTAACCAA 58.630 52.381 0.00 0.00 0.00 3.67
4398 4465 1.408961 CCTCTCTCTCTCGCCTAACCA 60.409 57.143 0.00 0.00 0.00 3.67
4399 4466 1.314730 CCTCTCTCTCTCGCCTAACC 58.685 60.000 0.00 0.00 0.00 2.85
4400 4467 1.673920 CACCTCTCTCTCTCGCCTAAC 59.326 57.143 0.00 0.00 0.00 2.34
4401 4468 1.282447 ACACCTCTCTCTCTCGCCTAA 59.718 52.381 0.00 0.00 0.00 2.69
4402 4469 0.913205 ACACCTCTCTCTCTCGCCTA 59.087 55.000 0.00 0.00 0.00 3.93
4403 4470 0.679640 CACACCTCTCTCTCTCGCCT 60.680 60.000 0.00 0.00 0.00 5.52
4404 4471 1.806568 CACACCTCTCTCTCTCGCC 59.193 63.158 0.00 0.00 0.00 5.54
4405 4472 1.138671 GCACACCTCTCTCTCTCGC 59.861 63.158 0.00 0.00 0.00 5.03
4406 4473 1.427419 CGCACACCTCTCTCTCTCG 59.573 63.158 0.00 0.00 0.00 4.04
4407 4474 1.662438 CCCGCACACCTCTCTCTCTC 61.662 65.000 0.00 0.00 0.00 3.20
4408 4475 1.680651 CCCGCACACCTCTCTCTCT 60.681 63.158 0.00 0.00 0.00 3.10
4409 4476 1.662438 CTCCCGCACACCTCTCTCTC 61.662 65.000 0.00 0.00 0.00 3.20
4410 4477 1.680651 CTCCCGCACACCTCTCTCT 60.681 63.158 0.00 0.00 0.00 3.10
4411 4478 1.662438 CTCTCCCGCACACCTCTCTC 61.662 65.000 0.00 0.00 0.00 3.20
4412 4479 1.680651 CTCTCCCGCACACCTCTCT 60.681 63.158 0.00 0.00 0.00 3.10
4413 4480 1.662438 CTCTCTCCCGCACACCTCTC 61.662 65.000 0.00 0.00 0.00 3.20
4414 4481 1.680651 CTCTCTCCCGCACACCTCT 60.681 63.158 0.00 0.00 0.00 3.69
4415 4482 2.716017 CCTCTCTCCCGCACACCTC 61.716 68.421 0.00 0.00 0.00 3.85
4416 4483 2.681778 CCTCTCTCCCGCACACCT 60.682 66.667 0.00 0.00 0.00 4.00
4417 4484 2.997897 ACCTCTCTCCCGCACACC 60.998 66.667 0.00 0.00 0.00 4.16
4418 4485 2.262915 CACCTCTCTCCCGCACAC 59.737 66.667 0.00 0.00 0.00 3.82
4419 4486 2.203640 ACACCTCTCTCCCGCACA 60.204 61.111 0.00 0.00 0.00 4.57
4420 4487 2.262915 CACACCTCTCTCCCGCAC 59.737 66.667 0.00 0.00 0.00 5.34
4421 4488 3.695606 GCACACCTCTCTCCCGCA 61.696 66.667 0.00 0.00 0.00 5.69
4422 4489 4.803426 CGCACACCTCTCTCCCGC 62.803 72.222 0.00 0.00 0.00 6.13
4423 4490 4.135153 CCGCACACCTCTCTCCCG 62.135 72.222 0.00 0.00 0.00 5.14
4424 4491 3.775654 CCCGCACACCTCTCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
4425 4492 2.680352 TCCCGCACACCTCTCTCC 60.680 66.667 0.00 0.00 0.00 3.71
4426 4493 1.662438 CTCTCCCGCACACCTCTCTC 61.662 65.000 0.00 0.00 0.00 3.20
4427 4494 1.680651 CTCTCCCGCACACCTCTCT 60.681 63.158 0.00 0.00 0.00 3.10
4428 4495 1.662438 CTCTCTCCCGCACACCTCTC 61.662 65.000 0.00 0.00 0.00 3.20
4429 4496 1.680651 CTCTCTCCCGCACACCTCT 60.681 63.158 0.00 0.00 0.00 3.69
4430 4497 2.716017 CCTCTCTCCCGCACACCTC 61.716 68.421 0.00 0.00 0.00 3.85
4431 4498 2.681778 CCTCTCTCCCGCACACCT 60.682 66.667 0.00 0.00 0.00 4.00
4432 4499 4.459089 GCCTCTCTCCCGCACACC 62.459 72.222 0.00 0.00 0.00 4.16
4433 4500 4.803426 CGCCTCTCTCCCGCACAC 62.803 72.222 0.00 0.00 0.00 3.82
4435 4502 4.803426 CACGCCTCTCTCCCGCAC 62.803 72.222 0.00 0.00 0.00 5.34
4438 4505 3.827898 GACCACGCCTCTCTCCCG 61.828 72.222 0.00 0.00 0.00 5.14
4439 4506 3.827898 CGACCACGCCTCTCTCCC 61.828 72.222 0.00 0.00 0.00 4.30
4440 4507 2.750637 TCGACCACGCCTCTCTCC 60.751 66.667 0.00 0.00 39.58 3.71
4441 4508 2.795297 CTCGACCACGCCTCTCTC 59.205 66.667 0.00 0.00 39.58 3.20
4442 4509 3.444805 GCTCGACCACGCCTCTCT 61.445 66.667 0.00 0.00 39.58 3.10
4443 4510 4.838486 CGCTCGACCACGCCTCTC 62.838 72.222 0.00 0.00 39.58 3.20
4459 4526 4.838486 GTCTCTCTCGCACGCCCG 62.838 72.222 0.00 0.00 0.00 6.13
4460 4527 3.069980 ATGTCTCTCTCGCACGCCC 62.070 63.158 0.00 0.00 0.00 6.13
4461 4528 1.875813 CATGTCTCTCTCGCACGCC 60.876 63.158 0.00 0.00 0.00 5.68
4462 4529 2.512301 GCATGTCTCTCTCGCACGC 61.512 63.158 0.00 0.00 0.00 5.34
4463 4530 2.220224 CGCATGTCTCTCTCGCACG 61.220 63.158 0.00 0.00 0.00 5.34
4464 4531 0.865218 CTCGCATGTCTCTCTCGCAC 60.865 60.000 0.00 0.00 0.00 5.34
4465 4532 1.026718 TCTCGCATGTCTCTCTCGCA 61.027 55.000 0.00 0.00 0.00 5.10
4466 4533 0.316937 CTCTCGCATGTCTCTCTCGC 60.317 60.000 0.00 0.00 0.00 5.03
4467 4534 1.261354 CTCTCTCGCATGTCTCTCTCG 59.739 57.143 0.00 0.00 0.00 4.04
4468 4535 1.603802 CCTCTCTCGCATGTCTCTCTC 59.396 57.143 0.00 0.00 0.00 3.20
4469 4536 1.679139 CCTCTCTCGCATGTCTCTCT 58.321 55.000 0.00 0.00 0.00 3.10
4470 4537 0.667993 CCCTCTCTCGCATGTCTCTC 59.332 60.000 0.00 0.00 0.00 3.20
4471 4538 0.754957 CCCCTCTCTCGCATGTCTCT 60.755 60.000 0.00 0.00 0.00 3.10
4472 4539 1.739049 CCCCTCTCTCGCATGTCTC 59.261 63.158 0.00 0.00 0.00 3.36
4473 4540 2.430610 GCCCCTCTCTCGCATGTCT 61.431 63.158 0.00 0.00 0.00 3.41
4474 4541 2.107953 GCCCCTCTCTCGCATGTC 59.892 66.667 0.00 0.00 0.00 3.06
4475 4542 3.842923 CGCCCCTCTCTCGCATGT 61.843 66.667 0.00 0.00 0.00 3.21
4476 4543 3.496875 CTCGCCCCTCTCTCGCATG 62.497 68.421 0.00 0.00 0.00 4.06
4477 4544 3.222855 CTCGCCCCTCTCTCGCAT 61.223 66.667 0.00 0.00 0.00 4.73
4480 4547 3.898509 CAGCTCGCCCCTCTCTCG 61.899 72.222 0.00 0.00 0.00 4.04
4481 4548 2.757917 ACAGCTCGCCCCTCTCTC 60.758 66.667 0.00 0.00 0.00 3.20
4482 4549 3.073735 CACAGCTCGCCCCTCTCT 61.074 66.667 0.00 0.00 0.00 3.10
4483 4550 4.154347 CCACAGCTCGCCCCTCTC 62.154 72.222 0.00 0.00 0.00 3.20
4488 4555 4.468689 GTACCCCACAGCTCGCCC 62.469 72.222 0.00 0.00 0.00 6.13
4489 4556 4.468689 GGTACCCCACAGCTCGCC 62.469 72.222 0.00 0.00 0.00 5.54
4490 4557 4.814294 CGGTACCCCACAGCTCGC 62.814 72.222 6.25 0.00 0.00 5.03
4491 4558 4.143333 CCGGTACCCCACAGCTCG 62.143 72.222 6.25 0.00 0.00 5.03
4492 4559 3.782443 CCCGGTACCCCACAGCTC 61.782 72.222 6.25 0.00 0.00 4.09
4493 4560 4.651516 ACCCGGTACCCCACAGCT 62.652 66.667 6.25 0.00 0.00 4.24
4494 4561 3.200329 AAACCCGGTACCCCACAGC 62.200 63.158 6.25 0.00 0.00 4.40
4495 4562 1.302993 CAAACCCGGTACCCCACAG 60.303 63.158 6.25 0.00 0.00 3.66
4496 4563 2.831645 CCAAACCCGGTACCCCACA 61.832 63.158 6.25 0.00 0.00 4.17
4497 4564 2.034532 CCAAACCCGGTACCCCAC 59.965 66.667 6.25 0.00 0.00 4.61
4498 4565 0.769776 TAACCAAACCCGGTACCCCA 60.770 55.000 6.25 0.00 38.76 4.96
4499 4566 0.035152 CTAACCAAACCCGGTACCCC 60.035 60.000 6.25 0.00 38.76 4.95
4500 4567 0.677731 GCTAACCAAACCCGGTACCC 60.678 60.000 6.25 0.00 38.76 3.69
4501 4568 1.020861 CGCTAACCAAACCCGGTACC 61.021 60.000 0.16 0.16 38.76 3.34
4502 4569 0.037419 TCGCTAACCAAACCCGGTAC 60.037 55.000 0.00 0.00 38.76 3.34
4503 4570 0.247185 CTCGCTAACCAAACCCGGTA 59.753 55.000 0.00 0.00 38.76 4.02
4504 4571 1.004200 CTCGCTAACCAAACCCGGT 60.004 57.895 0.00 0.00 42.71 5.28
4505 4572 0.247185 TACTCGCTAACCAAACCCGG 59.753 55.000 0.00 0.00 0.00 5.73
4506 4573 1.203052 TCTACTCGCTAACCAAACCCG 59.797 52.381 0.00 0.00 0.00 5.28
4507 4574 3.538634 ATCTACTCGCTAACCAAACCC 57.461 47.619 0.00 0.00 0.00 4.11
4508 4575 4.501058 CCCTATCTACTCGCTAACCAAACC 60.501 50.000 0.00 0.00 0.00 3.27
4509 4576 4.099113 ACCCTATCTACTCGCTAACCAAAC 59.901 45.833 0.00 0.00 0.00 2.93
4510 4577 4.284178 ACCCTATCTACTCGCTAACCAAA 58.716 43.478 0.00 0.00 0.00 3.28
4511 4578 3.907221 ACCCTATCTACTCGCTAACCAA 58.093 45.455 0.00 0.00 0.00 3.67
4512 4579 3.589951 ACCCTATCTACTCGCTAACCA 57.410 47.619 0.00 0.00 0.00 3.67
4513 4580 5.105837 CCATTACCCTATCTACTCGCTAACC 60.106 48.000 0.00 0.00 0.00 2.85
4514 4581 5.621781 GCCATTACCCTATCTACTCGCTAAC 60.622 48.000 0.00 0.00 0.00 2.34
4515 4582 4.461781 GCCATTACCCTATCTACTCGCTAA 59.538 45.833 0.00 0.00 0.00 3.09
4516 4583 4.015084 GCCATTACCCTATCTACTCGCTA 58.985 47.826 0.00 0.00 0.00 4.26
4517 4584 2.826725 GCCATTACCCTATCTACTCGCT 59.173 50.000 0.00 0.00 0.00 4.93
4518 4585 2.561419 TGCCATTACCCTATCTACTCGC 59.439 50.000 0.00 0.00 0.00 5.03
4519 4586 4.462834 TCATGCCATTACCCTATCTACTCG 59.537 45.833 0.00 0.00 0.00 4.18
4520 4587 6.344500 CATCATGCCATTACCCTATCTACTC 58.656 44.000 0.00 0.00 0.00 2.59
4521 4588 5.190528 CCATCATGCCATTACCCTATCTACT 59.809 44.000 0.00 0.00 0.00 2.57
4522 4589 5.431765 CCATCATGCCATTACCCTATCTAC 58.568 45.833 0.00 0.00 0.00 2.59
4523 4590 4.474651 CCCATCATGCCATTACCCTATCTA 59.525 45.833 0.00 0.00 0.00 1.98
4524 4591 3.267812 CCCATCATGCCATTACCCTATCT 59.732 47.826 0.00 0.00 0.00 1.98
4525 4592 3.010584 ACCCATCATGCCATTACCCTATC 59.989 47.826 0.00 0.00 0.00 2.08
4526 4593 2.996021 ACCCATCATGCCATTACCCTAT 59.004 45.455 0.00 0.00 0.00 2.57
4527 4594 2.427872 ACCCATCATGCCATTACCCTA 58.572 47.619 0.00 0.00 0.00 3.53
4528 4595 1.234806 ACCCATCATGCCATTACCCT 58.765 50.000 0.00 0.00 0.00 4.34
4529 4596 2.969821 TACCCATCATGCCATTACCC 57.030 50.000 0.00 0.00 0.00 3.69
4530 4597 6.909550 TTAATTACCCATCATGCCATTACC 57.090 37.500 0.00 0.00 0.00 2.85
4531 4598 6.868339 GCTTTAATTACCCATCATGCCATTAC 59.132 38.462 0.00 0.00 0.00 1.89
4532 4599 6.294453 CGCTTTAATTACCCATCATGCCATTA 60.294 38.462 0.00 0.00 0.00 1.90
4533 4600 5.509501 CGCTTTAATTACCCATCATGCCATT 60.510 40.000 0.00 0.00 0.00 3.16
4534 4601 4.022068 CGCTTTAATTACCCATCATGCCAT 60.022 41.667 0.00 0.00 0.00 4.40
4535 4602 3.317711 CGCTTTAATTACCCATCATGCCA 59.682 43.478 0.00 0.00 0.00 4.92
4536 4603 3.317993 ACGCTTTAATTACCCATCATGCC 59.682 43.478 0.00 0.00 0.00 4.40
4537 4604 4.568152 ACGCTTTAATTACCCATCATGC 57.432 40.909 0.00 0.00 0.00 4.06
4540 4607 8.336806 CGTATTTTACGCTTTAATTACCCATCA 58.663 33.333 0.00 0.00 45.81 3.07
4541 4608 8.703823 CGTATTTTACGCTTTAATTACCCATC 57.296 34.615 0.00 0.00 45.81 3.51
4557 4624 9.962759 CACTCCAACATACTAAACGTATTTTAC 57.037 33.333 0.00 0.00 36.69 2.01
4558 4625 9.926158 TCACTCCAACATACTAAACGTATTTTA 57.074 29.630 0.00 0.00 36.69 1.52
4559 4626 8.836268 TCACTCCAACATACTAAACGTATTTT 57.164 30.769 0.00 0.00 36.69 1.82
4560 4627 8.879759 CATCACTCCAACATACTAAACGTATTT 58.120 33.333 0.00 0.00 36.69 1.40
4561 4628 8.038944 ACATCACTCCAACATACTAAACGTATT 58.961 33.333 0.00 0.00 36.69 1.89
4562 4629 7.553334 ACATCACTCCAACATACTAAACGTAT 58.447 34.615 0.00 0.00 39.39 3.06
4563 4630 6.927416 ACATCACTCCAACATACTAAACGTA 58.073 36.000 0.00 0.00 0.00 3.57
4564 4631 5.790593 ACATCACTCCAACATACTAAACGT 58.209 37.500 0.00 0.00 0.00 3.99
4565 4632 7.220300 GTCTACATCACTCCAACATACTAAACG 59.780 40.741 0.00 0.00 0.00 3.60
4566 4633 7.491696 GGTCTACATCACTCCAACATACTAAAC 59.508 40.741 0.00 0.00 0.00 2.01
4567 4634 7.179516 TGGTCTACATCACTCCAACATACTAAA 59.820 37.037 0.00 0.00 0.00 1.85
4568 4635 6.666113 TGGTCTACATCACTCCAACATACTAA 59.334 38.462 0.00 0.00 0.00 2.24
4569 4636 6.192044 TGGTCTACATCACTCCAACATACTA 58.808 40.000 0.00 0.00 0.00 1.82
4570 4637 5.023452 TGGTCTACATCACTCCAACATACT 58.977 41.667 0.00 0.00 0.00 2.12
4571 4638 5.339008 TGGTCTACATCACTCCAACATAC 57.661 43.478 0.00 0.00 0.00 2.39
4572 4639 6.560003 AATGGTCTACATCACTCCAACATA 57.440 37.500 0.00 0.00 39.40 2.29
4573 4640 5.441718 AATGGTCTACATCACTCCAACAT 57.558 39.130 0.00 0.00 39.40 2.71
4574 4641 4.908601 AATGGTCTACATCACTCCAACA 57.091 40.909 0.00 0.00 39.40 3.33
4575 4642 6.222038 TCTAATGGTCTACATCACTCCAAC 57.778 41.667 0.00 0.00 39.40 3.77
4576 4643 7.437713 AATCTAATGGTCTACATCACTCCAA 57.562 36.000 0.00 0.00 39.40 3.53
4577 4644 7.563556 TGTAATCTAATGGTCTACATCACTCCA 59.436 37.037 0.00 0.00 39.40 3.86
4578 4645 7.952671 TGTAATCTAATGGTCTACATCACTCC 58.047 38.462 0.00 0.00 39.40 3.85
4579 4646 8.085296 CCTGTAATCTAATGGTCTACATCACTC 58.915 40.741 0.00 0.00 39.40 3.51
4580 4647 7.015682 CCCTGTAATCTAATGGTCTACATCACT 59.984 40.741 0.00 0.00 39.40 3.41
4581 4648 7.155328 CCCTGTAATCTAATGGTCTACATCAC 58.845 42.308 0.00 0.00 39.40 3.06
4582 4649 6.844388 ACCCTGTAATCTAATGGTCTACATCA 59.156 38.462 0.00 0.00 39.40 3.07
4583 4650 7.304497 ACCCTGTAATCTAATGGTCTACATC 57.696 40.000 0.00 0.00 39.40 3.06
4584 4651 7.471539 CGAACCCTGTAATCTAATGGTCTACAT 60.472 40.741 0.00 0.00 43.07 2.29
4585 4652 6.183360 CGAACCCTGTAATCTAATGGTCTACA 60.183 42.308 0.00 0.00 0.00 2.74
4586 4653 6.040166 TCGAACCCTGTAATCTAATGGTCTAC 59.960 42.308 0.00 0.00 0.00 2.59
4587 4654 6.131264 TCGAACCCTGTAATCTAATGGTCTA 58.869 40.000 0.00 0.00 0.00 2.59
4588 4655 4.960469 TCGAACCCTGTAATCTAATGGTCT 59.040 41.667 0.00 0.00 0.00 3.85
4589 4656 5.272283 TCGAACCCTGTAATCTAATGGTC 57.728 43.478 0.00 0.00 0.00 4.02
4590 4657 5.454755 CCATCGAACCCTGTAATCTAATGGT 60.455 44.000 0.00 0.00 0.00 3.55
4591 4658 4.997395 CCATCGAACCCTGTAATCTAATGG 59.003 45.833 0.00 0.00 0.00 3.16
4592 4659 5.853936 TCCATCGAACCCTGTAATCTAATG 58.146 41.667 0.00 0.00 0.00 1.90
4593 4660 6.688073 ATCCATCGAACCCTGTAATCTAAT 57.312 37.500 0.00 0.00 0.00 1.73
4594 4661 6.210784 CCTATCCATCGAACCCTGTAATCTAA 59.789 42.308 0.00 0.00 0.00 2.10
4595 4662 5.715279 CCTATCCATCGAACCCTGTAATCTA 59.285 44.000 0.00 0.00 0.00 1.98
4596 4663 4.528596 CCTATCCATCGAACCCTGTAATCT 59.471 45.833 0.00 0.00 0.00 2.40
4597 4664 4.527038 TCCTATCCATCGAACCCTGTAATC 59.473 45.833 0.00 0.00 0.00 1.75
4598 4665 4.489737 TCCTATCCATCGAACCCTGTAAT 58.510 43.478 0.00 0.00 0.00 1.89
4599 4666 3.918566 TCCTATCCATCGAACCCTGTAA 58.081 45.455 0.00 0.00 0.00 2.41
4600 4667 3.605726 TCCTATCCATCGAACCCTGTA 57.394 47.619 0.00 0.00 0.00 2.74
4601 4668 2.471815 TCCTATCCATCGAACCCTGT 57.528 50.000 0.00 0.00 0.00 4.00
4602 4669 2.899900 TCATCCTATCCATCGAACCCTG 59.100 50.000 0.00 0.00 0.00 4.45
4603 4670 3.260269 TCATCCTATCCATCGAACCCT 57.740 47.619 0.00 0.00 0.00 4.34
4604 4671 4.559862 AATCATCCTATCCATCGAACCC 57.440 45.455 0.00 0.00 0.00 4.11
4605 4672 5.551233 TCAAATCATCCTATCCATCGAACC 58.449 41.667 0.00 0.00 0.00 3.62
4606 4673 7.605691 AGAATCAAATCATCCTATCCATCGAAC 59.394 37.037 0.00 0.00 0.00 3.95
4607 4674 7.683578 AGAATCAAATCATCCTATCCATCGAA 58.316 34.615 0.00 0.00 0.00 3.71
4608 4675 7.250032 AGAATCAAATCATCCTATCCATCGA 57.750 36.000 0.00 0.00 0.00 3.59
4609 4676 6.538021 GGAGAATCAAATCATCCTATCCATCG 59.462 42.308 0.00 0.00 36.25 3.84
4610 4677 6.538021 CGGAGAATCAAATCATCCTATCCATC 59.462 42.308 0.00 0.00 36.25 3.51
4611 4678 6.413052 CGGAGAATCAAATCATCCTATCCAT 58.587 40.000 0.00 0.00 36.25 3.41
4612 4679 5.798132 CGGAGAATCAAATCATCCTATCCA 58.202 41.667 0.00 0.00 36.25 3.41
4613 4680 4.633565 GCGGAGAATCAAATCATCCTATCC 59.366 45.833 0.00 0.00 36.25 2.59
4614 4681 4.633565 GGCGGAGAATCAAATCATCCTATC 59.366 45.833 0.00 0.00 36.25 2.08
4615 4682 4.566488 GGGCGGAGAATCAAATCATCCTAT 60.566 45.833 0.00 0.00 36.25 2.57
4616 4683 3.244561 GGGCGGAGAATCAAATCATCCTA 60.245 47.826 0.00 0.00 36.25 2.94
4617 4684 2.487986 GGGCGGAGAATCAAATCATCCT 60.488 50.000 0.00 0.00 36.25 3.24
4618 4685 1.882623 GGGCGGAGAATCAAATCATCC 59.117 52.381 0.00 0.00 36.25 3.51
4619 4686 2.810852 GAGGGCGGAGAATCAAATCATC 59.189 50.000 0.00 0.00 36.25 2.92
4620 4687 2.441001 AGAGGGCGGAGAATCAAATCAT 59.559 45.455 0.00 0.00 36.25 2.45
4621 4688 1.839994 AGAGGGCGGAGAATCAAATCA 59.160 47.619 0.00 0.00 36.25 2.57
4622 4689 2.103941 AGAGAGGGCGGAGAATCAAATC 59.896 50.000 0.00 0.00 36.25 2.17
4623 4690 2.103941 GAGAGAGGGCGGAGAATCAAAT 59.896 50.000 0.00 0.00 36.25 2.32
4624 4691 1.482593 GAGAGAGGGCGGAGAATCAAA 59.517 52.381 0.00 0.00 36.25 2.69
4625 4692 1.115467 GAGAGAGGGCGGAGAATCAA 58.885 55.000 0.00 0.00 36.25 2.57
4626 4693 0.260230 AGAGAGAGGGCGGAGAATCA 59.740 55.000 0.00 0.00 36.25 2.57
4627 4694 0.958822 GAGAGAGAGGGCGGAGAATC 59.041 60.000 0.00 0.00 0.00 2.52
4628 4695 0.555769 AGAGAGAGAGGGCGGAGAAT 59.444 55.000 0.00 0.00 0.00 2.40
4629 4696 0.333312 AAGAGAGAGAGGGCGGAGAA 59.667 55.000 0.00 0.00 0.00 2.87
4630 4697 0.333312 AAAGAGAGAGAGGGCGGAGA 59.667 55.000 0.00 0.00 0.00 3.71
4631 4698 1.190643 AAAAGAGAGAGAGGGCGGAG 58.809 55.000 0.00 0.00 0.00 4.63
4632 4699 2.526888 TAAAAGAGAGAGAGGGCGGA 57.473 50.000 0.00 0.00 0.00 5.54
4633 4700 3.892588 ACTATAAAAGAGAGAGAGGGCGG 59.107 47.826 0.00 0.00 0.00 6.13
4634 4701 4.261825 CCACTATAAAAGAGAGAGAGGGCG 60.262 50.000 0.00 0.00 0.00 6.13
4635 4702 4.651962 ACCACTATAAAAGAGAGAGAGGGC 59.348 45.833 0.00 0.00 0.00 5.19
4636 4703 7.064229 ACTACCACTATAAAAGAGAGAGAGGG 58.936 42.308 0.00 0.00 0.00 4.30
4637 4704 9.280174 CTACTACCACTATAAAAGAGAGAGAGG 57.720 40.741 0.00 0.00 0.00 3.69
4713 4780 5.288804 TGCTGTTGCATAAAAAGAAGAACC 58.711 37.500 0.00 0.00 45.31 3.62
4740 4807 8.349983 GGTATGTGAAATTAAAGACAACACACT 58.650 33.333 0.00 0.00 39.06 3.55
4808 4876 1.956170 GCGATACCGTCCATGGCAG 60.956 63.158 6.96 2.80 38.24 4.85
4819 4887 0.674534 AGAAGATGGACGGCGATACC 59.325 55.000 16.62 14.46 0.00 2.73
4869 4937 6.157904 CAGTCATCAATGTGCCACAAAATTA 58.842 36.000 0.00 0.00 0.00 1.40
4976 5044 7.760340 AGAGAAACCTAATACGCAGAGTAAAAG 59.240 37.037 0.00 0.00 39.04 2.27
5143 5214 9.965824 AAGGGCAAATAAATGTTAGATAAATCG 57.034 29.630 0.00 0.00 0.00 3.34
5228 5387 1.133199 TGCCATTGGGTGAAAGGAAGT 60.133 47.619 4.53 0.00 36.17 3.01
5459 5618 5.614308 TGGATAACCAGATATTCACAGCAG 58.386 41.667 0.00 0.00 41.77 4.24
5612 5771 3.461831 TCCCAAGAGGAAGAGACCAAAAA 59.538 43.478 0.00 0.00 43.78 1.94
5669 5829 4.318050 GCTTCTTTCAAAATTGGCAACGAC 60.318 41.667 0.00 0.00 42.51 4.34
5677 5837 4.128643 TGCCTTGGCTTCTTTCAAAATTG 58.871 39.130 13.18 0.00 0.00 2.32
5678 5838 4.101430 TCTGCCTTGGCTTCTTTCAAAATT 59.899 37.500 13.18 0.00 0.00 1.82
5707 5885 1.280421 AGATGAGACCACAAGGCTTCC 59.720 52.381 0.00 0.00 39.06 3.46
5748 5926 0.877743 GGAACAAGAAGCTCAGGTGC 59.122 55.000 0.00 0.00 0.00 5.01
5849 6030 5.105392 AGTGTTCCTTTGTTCATTGCTTGAA 60.105 36.000 0.00 0.00 42.09 2.69
5850 6031 4.402155 AGTGTTCCTTTGTTCATTGCTTGA 59.598 37.500 0.00 0.00 0.00 3.02
5851 6032 4.505191 CAGTGTTCCTTTGTTCATTGCTTG 59.495 41.667 0.00 0.00 0.00 4.01
5852 6033 4.402155 TCAGTGTTCCTTTGTTCATTGCTT 59.598 37.500 0.00 0.00 0.00 3.91
5853 6034 3.953612 TCAGTGTTCCTTTGTTCATTGCT 59.046 39.130 0.00 0.00 0.00 3.91
5854 6035 4.305989 TCAGTGTTCCTTTGTTCATTGC 57.694 40.909 0.00 0.00 0.00 3.56
5989 6174 0.746063 TTGATGCAATGGATTCCGCC 59.254 50.000 0.00 0.00 0.00 6.13
6217 6403 2.364448 GAGGAGGAGAAGGGCCGT 60.364 66.667 0.00 0.00 0.00 5.68
6281 6467 3.474570 GCTCGGGATGGAGGCAGT 61.475 66.667 0.00 0.00 34.56 4.40
6296 6482 1.519719 GGAAGAGGTCATCTGCGCT 59.480 57.895 9.73 0.00 38.67 5.92
6369 6555 6.561614 TCTCTTGTCGTTATATCCAAGACAC 58.438 40.000 0.00 0.00 40.91 3.67
6417 6608 2.926838 CTCCTTCTTTAGTCTTCTGCGC 59.073 50.000 0.00 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.