Multiple sequence alignment - TraesCS5B01G119200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G119200 chr5B 100.000 2549 0 0 1650 4198 210734308 210736856 0.000000e+00 4708
1 TraesCS5B01G119200 chr5B 100.000 1376 0 0 1 1376 210732659 210734034 0.000000e+00 2542
2 TraesCS5B01G119200 chr5B 89.560 182 12 6 1650 1824 427917978 427917797 1.520000e-54 224
3 TraesCS5B01G119200 chr5B 89.130 184 10 9 1650 1825 381767531 381767350 1.960000e-53 220
4 TraesCS5B01G119200 chr5B 91.837 98 8 0 3006 3103 666201986 666202083 2.040000e-28 137
5 TraesCS5B01G119200 chr5D 94.942 1206 36 6 1823 3014 199884333 199885527 0.000000e+00 1866
6 TraesCS5B01G119200 chr5D 95.393 890 37 3 3110 3999 199885526 199886411 0.000000e+00 1413
7 TraesCS5B01G119200 chr5D 91.935 186 14 1 4013 4198 199886394 199886578 4.160000e-65 259
8 TraesCS5B01G119200 chr5D 93.684 95 5 1 1273 1366 245179283 245179377 1.570000e-29 141
9 TraesCS5B01G119200 chr4D 94.098 1186 51 7 193 1359 501053728 501052543 0.000000e+00 1784
10 TraesCS5B01G119200 chr4D 93.250 1200 56 13 196 1376 413043769 413042576 0.000000e+00 1744
11 TraesCS5B01G119200 chr4D 94.355 868 45 2 195 1061 384303569 384302705 0.000000e+00 1328
12 TraesCS5B01G119200 chr4D 89.503 181 13 5 1650 1825 413042461 413042282 1.520000e-54 224
13 TraesCS5B01G119200 chr4D 90.173 173 12 3 1655 1823 501052161 501051990 1.960000e-53 220
14 TraesCS5B01G119200 chr5A 95.152 990 40 6 1823 2808 217146589 217147574 0.000000e+00 1555
15 TraesCS5B01G119200 chr5A 93.426 867 53 3 194 1059 698320824 698319961 0.000000e+00 1282
16 TraesCS5B01G119200 chr5A 91.601 893 49 7 3113 3999 217148039 217148911 0.000000e+00 1210
17 TraesCS5B01G119200 chr5A 93.407 182 11 1 4018 4198 217148899 217149080 6.920000e-68 268
18 TraesCS5B01G119200 chr3D 95.392 868 35 4 196 1061 42304893 42305757 0.000000e+00 1376
19 TraesCS5B01G119200 chr2D 95.271 867 38 2 196 1061 631283072 631282208 0.000000e+00 1371
20 TraesCS5B01G119200 chr2D 94.131 869 42 7 195 1061 187042884 187043745 0.000000e+00 1314
21 TraesCS5B01G119200 chr2D 89.071 183 13 6 1650 1825 187056947 187057129 1.960000e-53 220
22 TraesCS5B01G119200 chr2D 89.535 172 10 6 1656 1823 598853464 598853297 1.180000e-50 211
23 TraesCS5B01G119200 chr2D 95.745 94 2 2 1285 1376 87564736 87564829 2.610000e-32 150
24 TraesCS5B01G119200 chr3B 93.578 872 49 6 193 1060 689417939 689417071 0.000000e+00 1293
25 TraesCS5B01G119200 chr3B 94.505 91 5 0 3013 3103 397570669 397570759 1.570000e-29 141
26 TraesCS5B01G119200 chr3B 91.753 97 8 0 3012 3108 41023185 41023089 7.320000e-28 135
27 TraesCS5B01G119200 chr2A 93.303 866 51 6 196 1058 31906259 31907120 0.000000e+00 1271
28 TraesCS5B01G119200 chr2A 91.753 291 24 0 1078 1368 166061874 166062164 5.050000e-109 405
29 TraesCS5B01G119200 chr1D 92.908 282 20 0 1084 1365 41567897 41567616 1.090000e-110 411
30 TraesCS5B01G119200 chr1D 89.769 303 26 4 1078 1376 381967094 381967395 2.370000e-102 383
31 TraesCS5B01G119200 chr1B 92.883 281 19 1 1078 1357 152520575 152520855 1.410000e-109 407
32 TraesCS5B01G119200 chr1B 92.553 94 7 0 3013 3106 603266849 603266756 7.320000e-28 135
33 TraesCS5B01G119200 chr3A 92.308 286 19 3 1084 1367 506979081 506978797 1.820000e-108 403
34 TraesCS5B01G119200 chr3A 89.831 177 11 6 1653 1824 26562476 26562650 1.960000e-53 220
35 TraesCS5B01G119200 chr7D 91.667 180 9 5 1652 1825 16900948 16900769 1.170000e-60 244
36 TraesCS5B01G119200 chr7B 89.071 183 12 7 1650 1825 197698327 197698508 1.960000e-53 220
37 TraesCS5B01G119200 chrUn 94.505 91 5 0 3013 3103 36601705 36601795 1.570000e-29 141
38 TraesCS5B01G119200 chrUn 94.505 91 5 0 3013 3103 269192159 269192249 1.570000e-29 141
39 TraesCS5B01G119200 chr4B 93.407 91 6 0 3013 3103 79997265 79997175 7.320000e-28 135
40 TraesCS5B01G119200 chr7A 90.625 96 9 0 3013 3108 515018861 515018766 1.230000e-25 128
41 TraesCS5B01G119200 chr1A 89.899 99 10 0 3013 3111 451282997 451282899 1.230000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G119200 chr5B 210732659 210736856 4197 False 3625.000000 4708 100.000000 1 4198 2 chr5B.!!$F2 4197
1 TraesCS5B01G119200 chr5D 199884333 199886578 2245 False 1179.333333 1866 94.090000 1823 4198 3 chr5D.!!$F2 2375
2 TraesCS5B01G119200 chr4D 384302705 384303569 864 True 1328.000000 1328 94.355000 195 1061 1 chr4D.!!$R1 866
3 TraesCS5B01G119200 chr4D 501051990 501053728 1738 True 1002.000000 1784 92.135500 193 1823 2 chr4D.!!$R3 1630
4 TraesCS5B01G119200 chr4D 413042282 413043769 1487 True 984.000000 1744 91.376500 196 1825 2 chr4D.!!$R2 1629
5 TraesCS5B01G119200 chr5A 698319961 698320824 863 True 1282.000000 1282 93.426000 194 1059 1 chr5A.!!$R1 865
6 TraesCS5B01G119200 chr5A 217146589 217149080 2491 False 1011.000000 1555 93.386667 1823 4198 3 chr5A.!!$F1 2375
7 TraesCS5B01G119200 chr3D 42304893 42305757 864 False 1376.000000 1376 95.392000 196 1061 1 chr3D.!!$F1 865
8 TraesCS5B01G119200 chr2D 631282208 631283072 864 True 1371.000000 1371 95.271000 196 1061 1 chr2D.!!$R2 865
9 TraesCS5B01G119200 chr2D 187042884 187043745 861 False 1314.000000 1314 94.131000 195 1061 1 chr2D.!!$F2 866
10 TraesCS5B01G119200 chr3B 689417071 689417939 868 True 1293.000000 1293 93.578000 193 1060 1 chr3B.!!$R2 867
11 TraesCS5B01G119200 chr2A 31906259 31907120 861 False 1271.000000 1271 93.303000 196 1058 1 chr2A.!!$F1 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.030638 GAGAGAGGAGATGCACGCTC 59.969 60.0 9.37 9.37 0.00 5.03 F
28 29 0.100682 GAGGAGATGCACGCTCGTTA 59.899 55.0 12.98 0.00 33.19 3.18 F
33 34 0.100682 GATGCACGCTCGTTAGGAGA 59.899 55.0 6.08 0.00 46.23 3.71 F
34 35 0.101399 ATGCACGCTCGTTAGGAGAG 59.899 55.0 6.08 5.11 46.23 3.20 F
75 76 0.104304 ATATTCACACGAGGTCGGCC 59.896 55.0 0.00 0.00 44.95 6.13 F
85 86 0.249615 GAGGTCGGCCGGGTATAAAC 60.250 60.0 27.83 14.16 40.50 2.01 F
2336 2619 0.249868 CCTTCGTGGAGTGCACAAGA 60.250 55.0 21.04 7.58 38.35 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1088 0.032678 GACCTCGCGATGATGACCAT 59.967 55.000 18.54 0.0 38.43 3.55 R
1919 2193 0.313672 TTGGCTGCGATTTGTTGGTC 59.686 50.000 0.00 0.0 0.00 4.02 R
1962 2236 3.443925 CAGCGAGAGTGGCGGAGA 61.444 66.667 0.00 0.0 35.00 3.71 R
2336 2619 0.039074 CGTCGTCTGTGCCTTCTTCT 60.039 55.000 0.00 0.0 0.00 2.85 R
2555 2838 7.646548 ATTGCTACTTATCTCTGTGTAGTCA 57.353 36.000 0.00 0.0 35.95 3.41 R
2597 2883 0.729140 CATTTTTCGCGGTGGCAGAC 60.729 55.000 6.13 0.0 39.92 3.51 R
3499 4179 0.541863 GGACGACCATGTGGAGGAAT 59.458 55.000 5.96 0.0 38.94 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.177997 GAAAGGAGAGAGGAGATGCAC 57.822 52.381 0.00 0.00 0.00 4.57
21 22 1.110442 AAGGAGAGAGGAGATGCACG 58.890 55.000 0.00 0.00 0.00 5.34
22 23 1.067250 GGAGAGAGGAGATGCACGC 59.933 63.158 0.00 0.00 0.00 5.34
23 24 1.391157 GGAGAGAGGAGATGCACGCT 61.391 60.000 0.00 0.00 0.00 5.07
24 25 0.030638 GAGAGAGGAGATGCACGCTC 59.969 60.000 9.37 9.37 0.00 5.03
25 26 1.299014 GAGAGGAGATGCACGCTCG 60.299 63.158 11.12 0.00 33.19 5.03
26 27 1.999071 GAGAGGAGATGCACGCTCGT 61.999 60.000 11.95 11.95 33.19 4.18
27 28 1.153745 GAGGAGATGCACGCTCGTT 60.154 57.895 12.98 4.94 33.19 3.85
28 29 0.100682 GAGGAGATGCACGCTCGTTA 59.899 55.000 12.98 0.00 33.19 3.18
29 30 0.101399 AGGAGATGCACGCTCGTTAG 59.899 55.000 11.12 0.00 33.19 2.34
30 31 0.872021 GGAGATGCACGCTCGTTAGG 60.872 60.000 11.12 0.00 33.19 2.69
31 32 0.100682 GAGATGCACGCTCGTTAGGA 59.899 55.000 2.97 0.00 0.00 2.94
32 33 0.101399 AGATGCACGCTCGTTAGGAG 59.899 55.000 0.00 0.00 46.06 3.69
33 34 0.100682 GATGCACGCTCGTTAGGAGA 59.899 55.000 6.08 0.00 46.23 3.71
34 35 0.101399 ATGCACGCTCGTTAGGAGAG 59.899 55.000 6.08 5.11 46.23 3.20
35 36 1.226717 GCACGCTCGTTAGGAGAGG 60.227 63.158 6.08 0.00 45.75 3.69
36 37 1.654954 GCACGCTCGTTAGGAGAGGA 61.655 60.000 6.08 0.00 45.75 3.71
37 38 0.809385 CACGCTCGTTAGGAGAGGAA 59.191 55.000 6.08 0.00 45.75 3.36
38 39 1.201647 CACGCTCGTTAGGAGAGGAAA 59.798 52.381 6.08 0.00 45.75 3.13
39 40 1.891150 ACGCTCGTTAGGAGAGGAAAA 59.109 47.619 6.08 0.00 45.75 2.29
40 41 2.260481 CGCTCGTTAGGAGAGGAAAAC 58.740 52.381 6.08 0.00 46.23 2.43
41 42 2.352421 CGCTCGTTAGGAGAGGAAAACA 60.352 50.000 6.08 0.00 46.23 2.83
42 43 3.660865 GCTCGTTAGGAGAGGAAAACAA 58.339 45.455 6.08 0.00 46.23 2.83
43 44 3.680458 GCTCGTTAGGAGAGGAAAACAAG 59.320 47.826 6.08 0.00 46.23 3.16
44 45 4.246458 CTCGTTAGGAGAGGAAAACAAGG 58.754 47.826 0.00 0.00 46.23 3.61
45 46 3.007614 TCGTTAGGAGAGGAAAACAAGGG 59.992 47.826 0.00 0.00 0.00 3.95
46 47 3.687125 GTTAGGAGAGGAAAACAAGGGG 58.313 50.000 0.00 0.00 0.00 4.79
47 48 2.133858 AGGAGAGGAAAACAAGGGGA 57.866 50.000 0.00 0.00 0.00 4.81
48 49 1.988846 AGGAGAGGAAAACAAGGGGAG 59.011 52.381 0.00 0.00 0.00 4.30
49 50 1.985895 GGAGAGGAAAACAAGGGGAGA 59.014 52.381 0.00 0.00 0.00 3.71
50 51 2.290387 GGAGAGGAAAACAAGGGGAGAC 60.290 54.545 0.00 0.00 0.00 3.36
51 52 2.372172 GAGAGGAAAACAAGGGGAGACA 59.628 50.000 0.00 0.00 0.00 3.41
52 53 2.989571 AGAGGAAAACAAGGGGAGACAT 59.010 45.455 0.00 0.00 0.00 3.06
53 54 3.399305 AGAGGAAAACAAGGGGAGACATT 59.601 43.478 0.00 0.00 0.00 2.71
54 55 3.500343 AGGAAAACAAGGGGAGACATTG 58.500 45.455 0.00 0.00 35.39 2.82
55 56 2.029020 GGAAAACAAGGGGAGACATTGC 60.029 50.000 0.00 0.00 33.27 3.56
56 57 2.380064 AAACAAGGGGAGACATTGCA 57.620 45.000 0.00 0.00 33.27 4.08
57 58 2.610438 AACAAGGGGAGACATTGCAT 57.390 45.000 0.00 0.00 33.27 3.96
58 59 3.737559 AACAAGGGGAGACATTGCATA 57.262 42.857 0.00 0.00 33.27 3.14
59 60 3.959495 ACAAGGGGAGACATTGCATAT 57.041 42.857 0.00 0.00 33.27 1.78
60 61 4.255510 ACAAGGGGAGACATTGCATATT 57.744 40.909 0.00 0.00 33.27 1.28
61 62 4.210331 ACAAGGGGAGACATTGCATATTC 58.790 43.478 0.00 0.00 33.27 1.75
62 63 4.209538 CAAGGGGAGACATTGCATATTCA 58.790 43.478 0.00 0.00 0.00 2.57
63 64 3.825328 AGGGGAGACATTGCATATTCAC 58.175 45.455 0.00 0.00 0.00 3.18
64 65 3.202818 AGGGGAGACATTGCATATTCACA 59.797 43.478 0.00 0.00 0.00 3.58
65 66 3.316308 GGGGAGACATTGCATATTCACAC 59.684 47.826 0.00 0.00 0.00 3.82
66 67 3.002656 GGGAGACATTGCATATTCACACG 59.997 47.826 0.00 0.00 0.00 4.49
67 68 3.871006 GGAGACATTGCATATTCACACGA 59.129 43.478 0.00 0.00 0.00 4.35
68 69 4.025396 GGAGACATTGCATATTCACACGAG 60.025 45.833 0.00 0.00 0.00 4.18
69 70 3.873361 AGACATTGCATATTCACACGAGG 59.127 43.478 0.00 0.00 0.00 4.63
70 71 3.609853 ACATTGCATATTCACACGAGGT 58.390 40.909 0.00 0.00 0.00 3.85
71 72 3.623060 ACATTGCATATTCACACGAGGTC 59.377 43.478 0.00 0.00 0.00 3.85
72 73 1.921243 TGCATATTCACACGAGGTCG 58.079 50.000 0.00 0.00 46.33 4.79
73 74 1.209128 GCATATTCACACGAGGTCGG 58.791 55.000 4.13 0.00 44.95 4.79
74 75 1.209128 CATATTCACACGAGGTCGGC 58.791 55.000 4.13 0.00 44.95 5.54
75 76 0.104304 ATATTCACACGAGGTCGGCC 59.896 55.000 0.00 0.00 44.95 6.13
76 77 2.274232 TATTCACACGAGGTCGGCCG 62.274 60.000 22.12 22.12 44.95 6.13
81 82 4.828296 ACGAGGTCGGCCGGGTAT 62.828 66.667 27.83 9.23 44.95 2.73
82 83 2.595463 CGAGGTCGGCCGGGTATA 60.595 66.667 27.83 1.12 40.50 1.47
83 84 2.195567 CGAGGTCGGCCGGGTATAA 61.196 63.158 27.83 0.17 40.50 0.98
84 85 1.737355 CGAGGTCGGCCGGGTATAAA 61.737 60.000 27.83 0.00 40.50 1.40
85 86 0.249615 GAGGTCGGCCGGGTATAAAC 60.250 60.000 27.83 14.16 40.50 2.01
86 87 1.592400 GGTCGGCCGGGTATAAACG 60.592 63.158 27.83 0.00 0.00 3.60
87 88 1.141665 GTCGGCCGGGTATAAACGT 59.858 57.895 27.83 0.00 0.00 3.99
88 89 0.460109 GTCGGCCGGGTATAAACGTT 60.460 55.000 27.83 0.00 0.00 3.99
89 90 1.107114 TCGGCCGGGTATAAACGTTA 58.893 50.000 27.83 0.00 0.00 3.18
90 91 1.202359 TCGGCCGGGTATAAACGTTAC 60.202 52.381 27.83 0.00 0.00 2.50
91 92 1.581934 GGCCGGGTATAAACGTTACC 58.418 55.000 9.79 9.79 38.73 2.85
107 108 6.688637 ACGTTACCCATTAAATAAAGCTCC 57.311 37.500 0.00 0.00 0.00 4.70
108 109 5.591472 ACGTTACCCATTAAATAAAGCTCCC 59.409 40.000 0.00 0.00 0.00 4.30
109 110 5.591067 CGTTACCCATTAAATAAAGCTCCCA 59.409 40.000 0.00 0.00 0.00 4.37
110 111 6.095720 CGTTACCCATTAAATAAAGCTCCCAA 59.904 38.462 0.00 0.00 0.00 4.12
111 112 7.201875 CGTTACCCATTAAATAAAGCTCCCAAT 60.202 37.037 0.00 0.00 0.00 3.16
112 113 6.731292 ACCCATTAAATAAAGCTCCCAATC 57.269 37.500 0.00 0.00 0.00 2.67
113 114 6.443832 ACCCATTAAATAAAGCTCCCAATCT 58.556 36.000 0.00 0.00 0.00 2.40
114 115 6.902974 ACCCATTAAATAAAGCTCCCAATCTT 59.097 34.615 0.00 0.00 0.00 2.40
115 116 7.069950 ACCCATTAAATAAAGCTCCCAATCTTC 59.930 37.037 0.00 0.00 0.00 2.87
116 117 7.069826 CCCATTAAATAAAGCTCCCAATCTTCA 59.930 37.037 0.00 0.00 0.00 3.02
117 118 7.922811 CCATTAAATAAAGCTCCCAATCTTCAC 59.077 37.037 0.00 0.00 0.00 3.18
118 119 8.469200 CATTAAATAAAGCTCCCAATCTTCACA 58.531 33.333 0.00 0.00 0.00 3.58
119 120 6.916360 AAATAAAGCTCCCAATCTTCACAA 57.084 33.333 0.00 0.00 0.00 3.33
120 121 6.916360 AATAAAGCTCCCAATCTTCACAAA 57.084 33.333 0.00 0.00 0.00 2.83
121 122 6.916360 ATAAAGCTCCCAATCTTCACAAAA 57.084 33.333 0.00 0.00 0.00 2.44
122 123 5.612725 AAAGCTCCCAATCTTCACAAAAA 57.387 34.783 0.00 0.00 0.00 1.94
143 144 2.669240 GGCTAGGAAGGCCGTTGT 59.331 61.111 0.00 0.00 42.39 3.32
144 145 1.002502 GGCTAGGAAGGCCGTTGTT 60.003 57.895 0.00 0.00 42.39 2.83
145 146 1.305930 GGCTAGGAAGGCCGTTGTTG 61.306 60.000 0.00 0.00 42.39 3.33
146 147 0.605589 GCTAGGAAGGCCGTTGTTGT 60.606 55.000 0.00 0.00 39.96 3.32
147 148 1.892209 CTAGGAAGGCCGTTGTTGTT 58.108 50.000 0.00 0.00 39.96 2.83
148 149 2.227194 CTAGGAAGGCCGTTGTTGTTT 58.773 47.619 0.00 0.00 39.96 2.83
149 150 1.480789 AGGAAGGCCGTTGTTGTTTT 58.519 45.000 0.00 0.00 39.96 2.43
150 151 1.407618 AGGAAGGCCGTTGTTGTTTTC 59.592 47.619 0.00 0.00 39.96 2.29
151 152 1.407618 GGAAGGCCGTTGTTGTTTTCT 59.592 47.619 0.00 0.00 0.00 2.52
152 153 2.543031 GGAAGGCCGTTGTTGTTTTCTC 60.543 50.000 0.00 0.00 0.00 2.87
153 154 2.052782 AGGCCGTTGTTGTTTTCTCT 57.947 45.000 0.00 0.00 0.00 3.10
154 155 1.947456 AGGCCGTTGTTGTTTTCTCTC 59.053 47.619 0.00 0.00 0.00 3.20
155 156 1.001706 GGCCGTTGTTGTTTTCTCTCC 60.002 52.381 0.00 0.00 0.00 3.71
156 157 1.001706 GCCGTTGTTGTTTTCTCTCCC 60.002 52.381 0.00 0.00 0.00 4.30
157 158 2.572290 CCGTTGTTGTTTTCTCTCCCT 58.428 47.619 0.00 0.00 0.00 4.20
158 159 3.735591 CCGTTGTTGTTTTCTCTCCCTA 58.264 45.455 0.00 0.00 0.00 3.53
159 160 3.497262 CCGTTGTTGTTTTCTCTCCCTAC 59.503 47.826 0.00 0.00 0.00 3.18
160 161 3.497262 CGTTGTTGTTTTCTCTCCCTACC 59.503 47.826 0.00 0.00 0.00 3.18
161 162 3.396260 TGTTGTTTTCTCTCCCTACCG 57.604 47.619 0.00 0.00 0.00 4.02
162 163 2.074576 GTTGTTTTCTCTCCCTACCGC 58.925 52.381 0.00 0.00 0.00 5.68
163 164 1.640917 TGTTTTCTCTCCCTACCGCT 58.359 50.000 0.00 0.00 0.00 5.52
164 165 2.811410 TGTTTTCTCTCCCTACCGCTA 58.189 47.619 0.00 0.00 0.00 4.26
165 166 2.758979 TGTTTTCTCTCCCTACCGCTAG 59.241 50.000 0.00 0.00 0.00 3.42
166 167 1.400737 TTTCTCTCCCTACCGCTAGC 58.599 55.000 4.06 4.06 0.00 3.42
167 168 0.818445 TTCTCTCCCTACCGCTAGCG 60.818 60.000 29.93 29.93 39.44 4.26
168 169 2.905880 TCTCCCTACCGCTAGCGC 60.906 66.667 31.35 0.00 38.24 5.92
169 170 3.217017 CTCCCTACCGCTAGCGCA 61.217 66.667 31.35 19.24 38.24 6.09
170 171 3.200887 CTCCCTACCGCTAGCGCAG 62.201 68.421 31.35 26.40 38.24 5.18
268 269 4.473520 CCTTGGATGCGAGCCCGT 62.474 66.667 0.00 0.00 38.24 5.28
360 363 2.596338 TGCTCGGTGTCCTCGTCA 60.596 61.111 0.00 0.00 0.00 4.35
387 390 2.608988 CAGTCCCCTCTGGTGGCT 60.609 66.667 0.00 0.00 34.77 4.75
526 529 1.640670 AGCTTTTCCCAGATTGGCCTA 59.359 47.619 3.32 0.00 35.79 3.93
657 660 5.463061 CCAGTCAATCAACACCATTGAAAAC 59.537 40.000 0.00 0.00 40.99 2.43
739 745 7.201741 GGAAAAGCTTCAACCTCTATATGGAAC 60.202 40.741 0.00 0.00 32.75 3.62
1039 1047 5.891551 ACCGTATATGGGAAAAGCTTCAAAT 59.108 36.000 15.56 0.00 32.75 2.32
1045 1053 3.258123 TGGGAAAAGCTTCAAATGGCTAC 59.742 43.478 0.00 0.00 37.87 3.58
1050 1058 1.032114 GCTTCAAATGGCTACCGGCT 61.032 55.000 0.00 0.00 41.46 5.52
1066 1074 4.648651 ACCGGCTACAGAAAAGTAACAAT 58.351 39.130 0.00 0.00 0.00 2.71
1080 1088 5.670792 AGTAACAATATCCAACGAGGTCA 57.329 39.130 0.00 0.00 39.02 4.02
1082 1090 6.049149 AGTAACAATATCCAACGAGGTCATG 58.951 40.000 0.00 0.00 39.02 3.07
1089 1097 1.066215 CCAACGAGGTCATGGTCATCA 60.066 52.381 0.00 0.00 0.00 3.07
1159 1170 3.821033 AGTAGTCACAAAATCCAACTGCC 59.179 43.478 0.00 0.00 0.00 4.85
1201 1212 4.122046 GTGCAGTTCCATTGAAGCTTTTT 58.878 39.130 0.00 0.00 0.00 1.94
1253 1264 5.092554 TGTTGAAGTTGTTCTAGGTGACA 57.907 39.130 0.00 0.00 33.38 3.58
1274 1285 4.932799 ACAGTTGCAACATTAGTATACGCA 59.067 37.500 30.11 0.00 0.00 5.24
1707 1979 1.079750 ACTCGCGGAAGGAAGAAGC 60.080 57.895 6.13 0.00 0.00 3.86
1709 1981 1.355066 CTCGCGGAAGGAAGAAGCAC 61.355 60.000 6.13 0.00 0.00 4.40
1710 1982 1.667830 CGCGGAAGGAAGAAGCACA 60.668 57.895 0.00 0.00 0.00 4.57
1711 1983 1.630244 CGCGGAAGGAAGAAGCACAG 61.630 60.000 0.00 0.00 0.00 3.66
1712 1984 0.320771 GCGGAAGGAAGAAGCACAGA 60.321 55.000 0.00 0.00 0.00 3.41
1743 2017 1.794222 GTTTCGATTGAGGCCCACG 59.206 57.895 0.00 0.00 0.00 4.94
1803 2077 4.736896 GAGCGTTCGGCCGGTTCT 62.737 66.667 27.83 17.03 45.17 3.01
1883 2157 1.272760 ACGACTGATCTCCAACTCCCT 60.273 52.381 0.00 0.00 0.00 4.20
1887 2161 2.292521 ACTGATCTCCAACTCCCTGCTA 60.293 50.000 0.00 0.00 0.00 3.49
1909 2183 1.470458 GCGTGTCTCTCTCATGATGCA 60.470 52.381 0.00 0.00 0.00 3.96
1919 2193 0.730840 TCATGATGCAAGCTTCGCAG 59.269 50.000 22.06 12.61 43.88 5.18
1943 2217 1.181098 ACAAATCGCAGCCAAAGCCT 61.181 50.000 0.00 0.00 41.25 4.58
2336 2619 0.249868 CCTTCGTGGAGTGCACAAGA 60.250 55.000 21.04 7.58 38.35 3.02
2597 2883 8.982685 AGTAGCAATAATTAACATGTCTGATCG 58.017 33.333 0.00 0.00 0.00 3.69
2625 2911 1.402720 CCGCGAAAAATGGCAGAACAT 60.403 47.619 8.23 0.00 0.00 2.71
2632 2918 4.612264 AAAATGGCAGAACATGAGCTTT 57.388 36.364 0.00 0.00 0.00 3.51
2742 3028 5.393962 CACAGCTTAATTAGTGTGCTTTCC 58.606 41.667 10.16 0.00 32.85 3.13
2798 3084 1.134946 GCTTGTTTCTGGCAACACAGT 59.865 47.619 0.00 0.00 46.17 3.55
2799 3085 2.357637 GCTTGTTTCTGGCAACACAGTA 59.642 45.455 0.00 0.00 46.17 2.74
2800 3086 3.792124 GCTTGTTTCTGGCAACACAGTAC 60.792 47.826 0.00 0.00 46.17 2.73
2801 3087 3.275617 TGTTTCTGGCAACACAGTACT 57.724 42.857 0.00 0.00 46.17 2.73
2802 3088 4.409718 TGTTTCTGGCAACACAGTACTA 57.590 40.909 0.00 0.00 46.17 1.82
2803 3089 4.124238 TGTTTCTGGCAACACAGTACTAC 58.876 43.478 0.00 0.00 46.17 2.73
2804 3090 4.141801 TGTTTCTGGCAACACAGTACTACT 60.142 41.667 0.00 0.00 46.17 2.57
2805 3091 5.069383 TGTTTCTGGCAACACAGTACTACTA 59.931 40.000 0.00 0.00 46.17 1.82
2806 3092 5.995565 TTCTGGCAACACAGTACTACTAT 57.004 39.130 0.00 0.00 46.17 2.12
2807 3093 7.039574 TGTTTCTGGCAACACAGTACTACTATA 60.040 37.037 0.00 0.00 46.17 1.31
2903 3322 0.107410 TGAAGTTGTTGCGGGAGTGT 60.107 50.000 0.00 0.00 0.00 3.55
2982 3402 1.002087 ACTTCGTCAAGTGATCACCCC 59.998 52.381 22.21 6.88 41.64 4.95
3019 3693 2.184322 CGCACACGCATACTCCCT 59.816 61.111 0.00 0.00 38.40 4.20
3020 3694 1.878522 CGCACACGCATACTCCCTC 60.879 63.158 0.00 0.00 38.40 4.30
3021 3695 1.521681 GCACACGCATACTCCCTCC 60.522 63.158 0.00 0.00 38.36 4.30
3022 3696 1.226974 CACACGCATACTCCCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
3023 3697 1.681327 ACACGCATACTCCCTCCGT 60.681 57.895 0.00 0.00 0.00 4.69
3024 3698 1.255667 ACACGCATACTCCCTCCGTT 61.256 55.000 0.00 0.00 0.00 4.44
3025 3699 0.527817 CACGCATACTCCCTCCGTTC 60.528 60.000 0.00 0.00 0.00 3.95
3026 3700 0.683504 ACGCATACTCCCTCCGTTCT 60.684 55.000 0.00 0.00 0.00 3.01
3027 3701 1.315690 CGCATACTCCCTCCGTTCTA 58.684 55.000 0.00 0.00 0.00 2.10
3028 3702 1.679680 CGCATACTCCCTCCGTTCTAA 59.320 52.381 0.00 0.00 0.00 2.10
3029 3703 2.100252 CGCATACTCCCTCCGTTCTAAA 59.900 50.000 0.00 0.00 0.00 1.85
3030 3704 3.243771 CGCATACTCCCTCCGTTCTAAAT 60.244 47.826 0.00 0.00 0.00 1.40
3031 3705 4.704965 GCATACTCCCTCCGTTCTAAATT 58.295 43.478 0.00 0.00 0.00 1.82
3032 3706 5.508489 CGCATACTCCCTCCGTTCTAAATTA 60.508 44.000 0.00 0.00 0.00 1.40
3033 3707 5.695363 GCATACTCCCTCCGTTCTAAATTAC 59.305 44.000 0.00 0.00 0.00 1.89
3034 3708 6.462628 GCATACTCCCTCCGTTCTAAATTACT 60.463 42.308 0.00 0.00 0.00 2.24
3035 3709 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
3036 3710 4.097589 ACTCCCTCCGTTCTAAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
3037 3711 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
3038 3712 4.096984 TCCCTCCGTTCTAAATTACTCGTC 59.903 45.833 0.00 0.00 0.00 4.20
3039 3713 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
3040 3714 3.429085 TCCGTTCTAAATTACTCGTCGC 58.571 45.455 0.00 0.00 0.00 5.19
3041 3715 3.127548 TCCGTTCTAAATTACTCGTCGCT 59.872 43.478 0.00 0.00 0.00 4.93
3042 3716 3.239941 CCGTTCTAAATTACTCGTCGCTG 59.760 47.826 0.00 0.00 0.00 5.18
3043 3717 4.093514 CGTTCTAAATTACTCGTCGCTGA 58.906 43.478 0.00 0.00 0.00 4.26
3044 3718 4.556135 CGTTCTAAATTACTCGTCGCTGAA 59.444 41.667 0.00 0.00 0.00 3.02
3045 3719 5.060077 CGTTCTAAATTACTCGTCGCTGAAA 59.940 40.000 0.00 0.00 0.00 2.69
3046 3720 6.237490 CGTTCTAAATTACTCGTCGCTGAAAT 60.237 38.462 0.00 0.00 0.00 2.17
3047 3721 7.044510 CGTTCTAAATTACTCGTCGCTGAAATA 60.045 37.037 0.00 0.00 0.00 1.40
3048 3722 7.909777 TCTAAATTACTCGTCGCTGAAATAG 57.090 36.000 0.00 0.00 0.00 1.73
3049 3723 7.700505 TCTAAATTACTCGTCGCTGAAATAGA 58.299 34.615 0.00 0.00 0.00 1.98
3050 3724 8.350722 TCTAAATTACTCGTCGCTGAAATAGAT 58.649 33.333 0.00 0.00 0.00 1.98
3051 3725 6.755461 AATTACTCGTCGCTGAAATAGATG 57.245 37.500 0.00 0.00 0.00 2.90
3052 3726 3.784701 ACTCGTCGCTGAAATAGATGT 57.215 42.857 0.00 0.00 0.00 3.06
3053 3727 4.895224 ACTCGTCGCTGAAATAGATGTA 57.105 40.909 0.00 0.00 0.00 2.29
3054 3728 5.440234 ACTCGTCGCTGAAATAGATGTAT 57.560 39.130 0.00 0.00 0.00 2.29
3055 3729 5.833082 ACTCGTCGCTGAAATAGATGTATT 58.167 37.500 0.00 0.00 0.00 1.89
3056 3730 6.273825 ACTCGTCGCTGAAATAGATGTATTT 58.726 36.000 7.53 7.53 40.85 1.40
3057 3731 7.423199 ACTCGTCGCTGAAATAGATGTATTTA 58.577 34.615 7.77 0.00 38.70 1.40
3058 3732 7.919091 ACTCGTCGCTGAAATAGATGTATTTAA 59.081 33.333 7.77 0.40 38.70 1.52
3059 3733 8.637281 TCGTCGCTGAAATAGATGTATTTAAA 57.363 30.769 7.77 0.00 38.70 1.52
3060 3734 9.089601 TCGTCGCTGAAATAGATGTATTTAAAA 57.910 29.630 7.77 0.00 38.70 1.52
3061 3735 9.144085 CGTCGCTGAAATAGATGTATTTAAAAC 57.856 33.333 7.77 3.01 38.70 2.43
3092 3766 6.543736 ACATCTACATACATCTATACGTGCG 58.456 40.000 0.00 0.00 0.00 5.34
3093 3767 6.370718 ACATCTACATACATCTATACGTGCGA 59.629 38.462 0.00 0.00 0.00 5.10
3094 3768 6.980051 TCTACATACATCTATACGTGCGAT 57.020 37.500 0.00 0.00 0.00 4.58
3095 3769 8.548721 CATCTACATACATCTATACGTGCGATA 58.451 37.037 0.00 0.00 0.00 2.92
3096 3770 8.483307 TCTACATACATCTATACGTGCGATAA 57.517 34.615 0.00 0.00 0.00 1.75
3097 3771 8.601476 TCTACATACATCTATACGTGCGATAAG 58.399 37.037 0.00 0.00 0.00 1.73
3098 3772 7.142306 ACATACATCTATACGTGCGATAAGT 57.858 36.000 0.00 0.00 0.00 2.24
3099 3773 8.260270 ACATACATCTATACGTGCGATAAGTA 57.740 34.615 0.00 0.00 0.00 2.24
3100 3774 8.724229 ACATACATCTATACGTGCGATAAGTAA 58.276 33.333 0.00 0.00 0.00 2.24
3101 3775 9.717892 CATACATCTATACGTGCGATAAGTAAT 57.282 33.333 0.00 0.00 0.00 1.89
3104 3778 9.770503 ACATCTATACGTGCGATAAGTAATTAG 57.229 33.333 0.00 0.00 0.00 1.73
3105 3779 9.222916 CATCTATACGTGCGATAAGTAATTAGG 57.777 37.037 0.00 0.00 0.00 2.69
3106 3780 7.755591 TCTATACGTGCGATAAGTAATTAGGG 58.244 38.462 0.00 0.00 0.00 3.53
3107 3781 4.924305 ACGTGCGATAAGTAATTAGGGA 57.076 40.909 0.00 0.00 0.00 4.20
3108 3782 4.868067 ACGTGCGATAAGTAATTAGGGAG 58.132 43.478 0.00 0.00 0.00 4.30
3115 3789 7.094463 TGCGATAAGTAATTAGGGAGTAGTAGC 60.094 40.741 0.00 0.00 0.00 3.58
3169 3843 4.148825 GACGCCGATGCTGTCCCT 62.149 66.667 0.00 0.00 36.03 4.20
3411 4091 3.222603 GTTGGACTTTTGTGATCCACCT 58.777 45.455 0.00 0.00 42.26 4.00
3443 4123 1.003866 GTCGGTCACAAGTGCTCAAAC 60.004 52.381 0.00 0.00 0.00 2.93
3499 4179 1.005037 GTCCATGTGCTCGTCACCA 60.005 57.895 7.80 0.00 45.03 4.17
3559 4239 1.213430 AGGGAGAGTCCTAGAGAACCG 59.787 57.143 0.00 0.00 36.57 4.44
3579 4259 2.223294 CGAGAGTCGATCCAACCACTAC 60.223 54.545 0.00 0.00 43.74 2.73
3683 4363 3.526534 TGATCCGTTGCGTTCATGATAA 58.473 40.909 0.00 0.00 0.00 1.75
3691 4371 5.457140 GTTGCGTTCATGATAAAAAGGTCA 58.543 37.500 0.00 0.00 0.00 4.02
3711 4391 6.372381 AGGTCAAATGCAATTGAAAATTAGGC 59.628 34.615 18.50 4.12 40.76 3.93
3713 4393 7.238571 GTCAAATGCAATTGAAAATTAGGCTG 58.761 34.615 18.50 1.73 40.76 4.85
3716 4396 7.781548 AATGCAATTGAAAATTAGGCTGATC 57.218 32.000 10.34 0.00 33.44 2.92
3798 4478 9.937175 GCTTTCGAATAATTTATAGAAGTGCTT 57.063 29.630 0.00 0.00 0.00 3.91
3845 4525 9.189723 GCAGCCAGAAGATTTCATATTTAAATC 57.810 33.333 3.39 10.43 41.57 2.17
3900 4580 1.470890 ACCGTTTTGATTGCCCATACG 59.529 47.619 0.00 0.00 0.00 3.06
3939 4619 1.271217 GCATGCCAGCATCCTCTGATA 60.271 52.381 6.36 0.00 36.19 2.15
3972 4652 7.871973 CACCAAATTGATCTTGTTGAACCATTA 59.128 33.333 0.00 0.00 0.00 1.90
3995 4675 9.905713 ATTATGACTAAGTGGAGCTTAATTTCA 57.094 29.630 0.00 0.00 39.01 2.69
3996 4676 9.905713 TTATGACTAAGTGGAGCTTAATTTCAT 57.094 29.630 0.00 0.00 39.01 2.57
4041 4721 6.197096 GCTTAATTTCATATTGTTCGGCTGTG 59.803 38.462 0.00 0.00 0.00 3.66
4044 4724 2.267426 TCATATTGTTCGGCTGTGACG 58.733 47.619 0.00 0.00 34.09 4.35
4101 4781 4.644234 TCATTTGGAACAGCAAAGTCTCAA 59.356 37.500 0.00 0.00 42.39 3.02
4102 4782 4.637483 TTTGGAACAGCAAAGTCTCAAG 57.363 40.909 0.00 0.00 42.39 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.481104 CGTGCATCTCCTCTCTCCTTTC 60.481 54.545 0.00 0.00 0.00 2.62
1 2 1.480137 CGTGCATCTCCTCTCTCCTTT 59.520 52.381 0.00 0.00 0.00 3.11
2 3 1.110442 CGTGCATCTCCTCTCTCCTT 58.890 55.000 0.00 0.00 0.00 3.36
3 4 1.391157 GCGTGCATCTCCTCTCTCCT 61.391 60.000 0.00 0.00 0.00 3.69
4 5 1.067250 GCGTGCATCTCCTCTCTCC 59.933 63.158 0.00 0.00 0.00 3.71
5 6 0.030638 GAGCGTGCATCTCCTCTCTC 59.969 60.000 7.48 0.00 0.00 3.20
6 7 1.723608 CGAGCGTGCATCTCCTCTCT 61.724 60.000 11.73 0.00 0.00 3.10
7 8 1.299014 CGAGCGTGCATCTCCTCTC 60.299 63.158 11.73 0.00 0.00 3.20
8 9 1.599606 AACGAGCGTGCATCTCCTCT 61.600 55.000 11.73 0.00 0.00 3.69
9 10 0.100682 TAACGAGCGTGCATCTCCTC 59.899 55.000 11.73 5.04 0.00 3.71
10 11 0.101399 CTAACGAGCGTGCATCTCCT 59.899 55.000 11.73 4.28 0.00 3.69
11 12 0.872021 CCTAACGAGCGTGCATCTCC 60.872 60.000 11.73 0.00 0.00 3.71
12 13 0.100682 TCCTAACGAGCGTGCATCTC 59.899 55.000 8.41 8.41 0.00 2.75
13 14 0.101399 CTCCTAACGAGCGTGCATCT 59.899 55.000 0.00 0.00 0.00 2.90
14 15 0.100682 TCTCCTAACGAGCGTGCATC 59.899 55.000 0.00 0.00 38.62 3.91
15 16 0.101399 CTCTCCTAACGAGCGTGCAT 59.899 55.000 0.00 0.00 38.62 3.96
16 17 1.506718 CTCTCCTAACGAGCGTGCA 59.493 57.895 0.00 0.00 38.62 4.57
17 18 1.226717 CCTCTCCTAACGAGCGTGC 60.227 63.158 0.00 0.00 38.62 5.34
18 19 0.809385 TTCCTCTCCTAACGAGCGTG 59.191 55.000 0.00 0.00 38.62 5.34
19 20 1.542492 TTTCCTCTCCTAACGAGCGT 58.458 50.000 0.00 0.00 38.62 5.07
20 21 2.260481 GTTTTCCTCTCCTAACGAGCG 58.740 52.381 0.00 0.00 38.62 5.03
21 22 3.314541 TGTTTTCCTCTCCTAACGAGC 57.685 47.619 0.00 0.00 38.62 5.03
22 23 4.246458 CCTTGTTTTCCTCTCCTAACGAG 58.754 47.826 0.00 0.00 40.30 4.18
23 24 3.007614 CCCTTGTTTTCCTCTCCTAACGA 59.992 47.826 0.00 0.00 0.00 3.85
24 25 3.335579 CCCTTGTTTTCCTCTCCTAACG 58.664 50.000 0.00 0.00 0.00 3.18
25 26 3.329814 TCCCCTTGTTTTCCTCTCCTAAC 59.670 47.826 0.00 0.00 0.00 2.34
26 27 3.587506 CTCCCCTTGTTTTCCTCTCCTAA 59.412 47.826 0.00 0.00 0.00 2.69
27 28 3.181399 TCTCCCCTTGTTTTCCTCTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
28 29 1.988846 CTCCCCTTGTTTTCCTCTCCT 59.011 52.381 0.00 0.00 0.00 3.69
29 30 1.985895 TCTCCCCTTGTTTTCCTCTCC 59.014 52.381 0.00 0.00 0.00 3.71
30 31 2.372172 TGTCTCCCCTTGTTTTCCTCTC 59.628 50.000 0.00 0.00 0.00 3.20
31 32 2.418669 TGTCTCCCCTTGTTTTCCTCT 58.581 47.619 0.00 0.00 0.00 3.69
32 33 2.951229 TGTCTCCCCTTGTTTTCCTC 57.049 50.000 0.00 0.00 0.00 3.71
33 34 3.500343 CAATGTCTCCCCTTGTTTTCCT 58.500 45.455 0.00 0.00 0.00 3.36
34 35 2.029020 GCAATGTCTCCCCTTGTTTTCC 60.029 50.000 0.00 0.00 0.00 3.13
35 36 2.627699 TGCAATGTCTCCCCTTGTTTTC 59.372 45.455 0.00 0.00 0.00 2.29
36 37 2.676748 TGCAATGTCTCCCCTTGTTTT 58.323 42.857 0.00 0.00 0.00 2.43
37 38 2.380064 TGCAATGTCTCCCCTTGTTT 57.620 45.000 0.00 0.00 0.00 2.83
38 39 2.610438 ATGCAATGTCTCCCCTTGTT 57.390 45.000 0.00 0.00 0.00 2.83
39 40 3.959495 ATATGCAATGTCTCCCCTTGT 57.041 42.857 0.00 0.00 0.00 3.16
40 41 4.037208 GTGAATATGCAATGTCTCCCCTTG 59.963 45.833 0.00 0.00 0.00 3.61
41 42 4.210331 GTGAATATGCAATGTCTCCCCTT 58.790 43.478 0.00 0.00 0.00 3.95
42 43 3.202818 TGTGAATATGCAATGTCTCCCCT 59.797 43.478 0.00 0.00 0.00 4.79
43 44 3.316308 GTGTGAATATGCAATGTCTCCCC 59.684 47.826 0.00 0.00 0.00 4.81
44 45 3.002656 CGTGTGAATATGCAATGTCTCCC 59.997 47.826 0.00 0.00 0.00 4.30
45 46 3.871006 TCGTGTGAATATGCAATGTCTCC 59.129 43.478 0.00 0.00 0.00 3.71
46 47 4.025396 CCTCGTGTGAATATGCAATGTCTC 60.025 45.833 0.00 0.00 0.00 3.36
47 48 3.873361 CCTCGTGTGAATATGCAATGTCT 59.127 43.478 0.00 0.00 0.00 3.41
48 49 3.623060 ACCTCGTGTGAATATGCAATGTC 59.377 43.478 0.00 0.00 0.00 3.06
49 50 3.609853 ACCTCGTGTGAATATGCAATGT 58.390 40.909 0.00 0.00 0.00 2.71
50 51 3.302675 CGACCTCGTGTGAATATGCAATG 60.303 47.826 0.00 0.00 34.11 2.82
51 52 2.866156 CGACCTCGTGTGAATATGCAAT 59.134 45.455 0.00 0.00 34.11 3.56
52 53 2.267426 CGACCTCGTGTGAATATGCAA 58.733 47.619 0.00 0.00 34.11 4.08
53 54 1.470805 CCGACCTCGTGTGAATATGCA 60.471 52.381 0.00 0.00 37.74 3.96
54 55 1.209128 CCGACCTCGTGTGAATATGC 58.791 55.000 0.00 0.00 37.74 3.14
55 56 1.209128 GCCGACCTCGTGTGAATATG 58.791 55.000 0.00 0.00 37.74 1.78
56 57 0.104304 GGCCGACCTCGTGTGAATAT 59.896 55.000 0.00 0.00 37.74 1.28
57 58 1.514087 GGCCGACCTCGTGTGAATA 59.486 57.895 0.00 0.00 37.74 1.75
58 59 2.264794 GGCCGACCTCGTGTGAAT 59.735 61.111 0.00 0.00 37.74 2.57
59 60 4.351938 CGGCCGACCTCGTGTGAA 62.352 66.667 24.07 0.00 37.74 3.18
64 65 2.909457 TTATACCCGGCCGACCTCGT 62.909 60.000 30.73 16.14 37.74 4.18
65 66 1.737355 TTTATACCCGGCCGACCTCG 61.737 60.000 30.73 9.42 39.44 4.63
66 67 0.249615 GTTTATACCCGGCCGACCTC 60.250 60.000 30.73 4.55 0.00 3.85
67 68 1.825341 GTTTATACCCGGCCGACCT 59.175 57.895 30.73 10.81 0.00 3.85
68 69 1.592400 CGTTTATACCCGGCCGACC 60.592 63.158 30.73 0.00 0.00 4.79
69 70 0.460109 AACGTTTATACCCGGCCGAC 60.460 55.000 30.73 14.26 0.00 4.79
70 71 1.107114 TAACGTTTATACCCGGCCGA 58.893 50.000 30.73 7.23 0.00 5.54
71 72 1.208259 GTAACGTTTATACCCGGCCG 58.792 55.000 21.04 21.04 0.00 6.13
72 73 1.581934 GGTAACGTTTATACCCGGCC 58.418 55.000 5.91 0.00 37.44 6.13
81 82 8.676401 GGAGCTTTATTTAATGGGTAACGTTTA 58.324 33.333 5.91 0.00 37.60 2.01
82 83 7.363181 GGGAGCTTTATTTAATGGGTAACGTTT 60.363 37.037 5.91 0.00 37.60 3.60
83 84 6.095860 GGGAGCTTTATTTAATGGGTAACGTT 59.904 38.462 5.88 5.88 37.60 3.99
84 85 5.591472 GGGAGCTTTATTTAATGGGTAACGT 59.409 40.000 0.00 0.00 37.60 3.99
85 86 5.591067 TGGGAGCTTTATTTAATGGGTAACG 59.409 40.000 0.00 0.00 37.60 3.18
86 87 7.412853 TTGGGAGCTTTATTTAATGGGTAAC 57.587 36.000 0.00 0.00 0.00 2.50
87 88 8.065007 AGATTGGGAGCTTTATTTAATGGGTAA 58.935 33.333 0.00 0.00 0.00 2.85
88 89 7.591821 AGATTGGGAGCTTTATTTAATGGGTA 58.408 34.615 0.00 0.00 0.00 3.69
89 90 6.443832 AGATTGGGAGCTTTATTTAATGGGT 58.556 36.000 0.00 0.00 0.00 4.51
90 91 6.983906 AGATTGGGAGCTTTATTTAATGGG 57.016 37.500 0.00 0.00 0.00 4.00
91 92 7.922811 GTGAAGATTGGGAGCTTTATTTAATGG 59.077 37.037 0.00 0.00 30.22 3.16
92 93 8.469200 TGTGAAGATTGGGAGCTTTATTTAATG 58.531 33.333 0.00 0.00 30.22 1.90
93 94 8.593945 TGTGAAGATTGGGAGCTTTATTTAAT 57.406 30.769 0.00 0.00 30.22 1.40
94 95 8.415950 TTGTGAAGATTGGGAGCTTTATTTAA 57.584 30.769 0.00 0.00 30.22 1.52
95 96 8.415950 TTTGTGAAGATTGGGAGCTTTATTTA 57.584 30.769 0.00 0.00 30.22 1.40
96 97 6.916360 TTGTGAAGATTGGGAGCTTTATTT 57.084 33.333 0.00 0.00 30.22 1.40
97 98 6.916360 TTTGTGAAGATTGGGAGCTTTATT 57.084 33.333 0.00 0.00 30.22 1.40
98 99 6.916360 TTTTGTGAAGATTGGGAGCTTTAT 57.084 33.333 0.00 0.00 30.22 1.40
99 100 6.723298 TTTTTGTGAAGATTGGGAGCTTTA 57.277 33.333 0.00 0.00 30.22 1.85
100 101 5.612725 TTTTTGTGAAGATTGGGAGCTTT 57.387 34.783 0.00 0.00 30.22 3.51
127 128 0.605589 ACAACAACGGCCTTCCTAGC 60.606 55.000 0.00 0.00 0.00 3.42
128 129 1.892209 AACAACAACGGCCTTCCTAG 58.108 50.000 0.00 0.00 0.00 3.02
129 130 2.351706 AAACAACAACGGCCTTCCTA 57.648 45.000 0.00 0.00 0.00 2.94
130 131 1.407618 GAAAACAACAACGGCCTTCCT 59.592 47.619 0.00 0.00 0.00 3.36
131 132 1.407618 AGAAAACAACAACGGCCTTCC 59.592 47.619 0.00 0.00 0.00 3.46
132 133 2.357952 AGAGAAAACAACAACGGCCTTC 59.642 45.455 0.00 0.00 0.00 3.46
133 134 2.357952 GAGAGAAAACAACAACGGCCTT 59.642 45.455 0.00 0.00 0.00 4.35
134 135 1.947456 GAGAGAAAACAACAACGGCCT 59.053 47.619 0.00 0.00 0.00 5.19
135 136 1.001706 GGAGAGAAAACAACAACGGCC 60.002 52.381 0.00 0.00 0.00 6.13
136 137 1.001706 GGGAGAGAAAACAACAACGGC 60.002 52.381 0.00 0.00 0.00 5.68
137 138 2.572290 AGGGAGAGAAAACAACAACGG 58.428 47.619 0.00 0.00 0.00 4.44
138 139 3.497262 GGTAGGGAGAGAAAACAACAACG 59.503 47.826 0.00 0.00 0.00 4.10
139 140 3.497262 CGGTAGGGAGAGAAAACAACAAC 59.503 47.826 0.00 0.00 0.00 3.32
140 141 3.735591 CGGTAGGGAGAGAAAACAACAA 58.264 45.455 0.00 0.00 0.00 2.83
141 142 2.549349 GCGGTAGGGAGAGAAAACAACA 60.549 50.000 0.00 0.00 0.00 3.33
142 143 2.074576 GCGGTAGGGAGAGAAAACAAC 58.925 52.381 0.00 0.00 0.00 3.32
143 144 1.975680 AGCGGTAGGGAGAGAAAACAA 59.024 47.619 0.00 0.00 0.00 2.83
144 145 1.640917 AGCGGTAGGGAGAGAAAACA 58.359 50.000 0.00 0.00 0.00 2.83
145 146 2.481622 GCTAGCGGTAGGGAGAGAAAAC 60.482 54.545 22.24 0.00 0.00 2.43
146 147 1.755380 GCTAGCGGTAGGGAGAGAAAA 59.245 52.381 22.24 0.00 0.00 2.29
147 148 1.400737 GCTAGCGGTAGGGAGAGAAA 58.599 55.000 22.24 0.00 0.00 2.52
148 149 0.818445 CGCTAGCGGTAGGGAGAGAA 60.818 60.000 29.29 0.00 40.84 2.87
149 150 1.227883 CGCTAGCGGTAGGGAGAGA 60.228 63.158 29.29 0.00 40.84 3.10
150 151 2.910345 GCGCTAGCGGTAGGGAGAG 61.910 68.421 35.86 11.63 40.84 3.20
151 152 2.905880 GCGCTAGCGGTAGGGAGA 60.906 66.667 35.86 0.00 40.84 3.71
175 176 1.565156 TTTACACAAGCAGCGCGGAG 61.565 55.000 13.03 1.90 0.00 4.63
176 177 1.565156 CTTTACACAAGCAGCGCGGA 61.565 55.000 13.03 0.00 0.00 5.54
177 178 1.154413 CTTTACACAAGCAGCGCGG 60.154 57.895 8.83 2.11 0.00 6.46
178 179 1.154413 CCTTTACACAAGCAGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
179 180 1.210155 CCCTTTACACAAGCAGCGC 59.790 57.895 0.00 0.00 0.00 5.92
180 181 1.210155 GCCCTTTACACAAGCAGCG 59.790 57.895 0.00 0.00 0.00 5.18
181 182 1.210155 CGCCCTTTACACAAGCAGC 59.790 57.895 0.00 0.00 0.00 5.25
182 183 1.131126 CATCGCCCTTTACACAAGCAG 59.869 52.381 0.00 0.00 0.00 4.24
183 184 1.164411 CATCGCCCTTTACACAAGCA 58.836 50.000 0.00 0.00 0.00 3.91
184 185 0.179163 GCATCGCCCTTTACACAAGC 60.179 55.000 0.00 0.00 0.00 4.01
185 186 1.453155 AGCATCGCCCTTTACACAAG 58.547 50.000 0.00 0.00 0.00 3.16
186 187 2.627945 CTAGCATCGCCCTTTACACAA 58.372 47.619 0.00 0.00 0.00 3.33
187 188 1.134521 CCTAGCATCGCCCTTTACACA 60.135 52.381 0.00 0.00 0.00 3.72
188 189 1.583054 CCTAGCATCGCCCTTTACAC 58.417 55.000 0.00 0.00 0.00 2.90
189 190 0.179056 GCCTAGCATCGCCCTTTACA 60.179 55.000 0.00 0.00 0.00 2.41
190 191 1.222115 CGCCTAGCATCGCCCTTTAC 61.222 60.000 0.00 0.00 0.00 2.01
191 192 1.069090 CGCCTAGCATCGCCCTTTA 59.931 57.895 0.00 0.00 0.00 1.85
268 269 2.034532 CTGCATCCAGTGGCCACA 59.965 61.111 36.39 17.95 34.31 4.17
526 529 2.049063 GTCGAGAGCTGCAACGGT 60.049 61.111 1.02 0.00 0.00 4.83
739 745 2.949106 CAGTGCCGGTTGAAGCTG 59.051 61.111 1.90 0.00 0.00 4.24
853 859 7.428183 CGATTTGAAACTTTTTCGTTCTTGAGA 59.572 33.333 0.00 0.00 0.00 3.27
1039 1047 0.978151 TTTTCTGTAGCCGGTAGCCA 59.022 50.000 1.90 0.00 45.47 4.75
1045 1053 6.018180 GGATATTGTTACTTTTCTGTAGCCGG 60.018 42.308 0.00 0.00 0.00 6.13
1050 1058 9.146984 CTCGTTGGATATTGTTACTTTTCTGTA 57.853 33.333 0.00 0.00 0.00 2.74
1066 1074 2.462723 TGACCATGACCTCGTTGGATA 58.537 47.619 0.00 0.00 39.71 2.59
1080 1088 0.032678 GACCTCGCGATGATGACCAT 59.967 55.000 18.54 0.00 38.43 3.55
1082 1090 1.658717 CGACCTCGCGATGATGACC 60.659 63.158 18.54 0.00 0.00 4.02
1135 1143 5.648092 GGCAGTTGGATTTTGTGACTACTAT 59.352 40.000 0.00 0.00 0.00 2.12
1143 1151 2.507339 AACGGCAGTTGGATTTTGTG 57.493 45.000 0.00 0.00 39.48 3.33
1159 1170 1.455383 AACAAGGGGAAGCTGCAACG 61.455 55.000 1.02 0.00 0.00 4.10
1201 1212 6.061441 TGAAAGAAGCTTCAACCATAGACAA 58.939 36.000 27.57 0.00 32.39 3.18
1239 1250 3.552132 TGCAACTGTCACCTAGAACAA 57.448 42.857 0.00 0.00 0.00 2.83
1253 1264 4.570772 CCTGCGTATACTAATGTTGCAACT 59.429 41.667 28.61 13.43 0.00 3.16
1274 1285 2.277737 CATGGCTGGATGCACCCT 59.722 61.111 0.00 0.00 45.15 4.34
1689 1961 1.079750 GCTTCTTCCTTCCGCGAGT 60.080 57.895 8.23 0.00 0.00 4.18
1696 1968 5.757850 TTTTCTTCTGTGCTTCTTCCTTC 57.242 39.130 0.00 0.00 0.00 3.46
1731 2005 2.590092 GGCTACGTGGGCCTCAAT 59.410 61.111 21.77 0.00 45.57 2.57
1743 2017 2.866762 CGCTCTTTTCCATGTAGGCTAC 59.133 50.000 17.76 17.76 37.29 3.58
1748 2022 1.590238 CGCTCGCTCTTTTCCATGTAG 59.410 52.381 0.00 0.00 0.00 2.74
1752 2026 1.086634 GCTCGCTCGCTCTTTTCCAT 61.087 55.000 0.00 0.00 0.00 3.41
1803 2077 1.238625 GGGAAACGTTTGGCATCCGA 61.239 55.000 20.10 0.00 0.00 4.55
1805 2079 0.966179 AAGGGAAACGTTTGGCATCC 59.034 50.000 20.10 12.88 34.05 3.51
1883 2157 1.463674 TGAGAGAGACACGCATAGCA 58.536 50.000 0.00 0.00 0.00 3.49
1887 2161 2.802415 GCATCATGAGAGAGACACGCAT 60.802 50.000 0.09 0.00 0.00 4.73
1919 2193 0.313672 TTGGCTGCGATTTGTTGGTC 59.686 50.000 0.00 0.00 0.00 4.02
1962 2236 3.443925 CAGCGAGAGTGGCGGAGA 61.444 66.667 0.00 0.00 35.00 3.71
2336 2619 0.039074 CGTCGTCTGTGCCTTCTTCT 60.039 55.000 0.00 0.00 0.00 2.85
2555 2838 7.646548 ATTGCTACTTATCTCTGTGTAGTCA 57.353 36.000 0.00 0.00 35.95 3.41
2597 2883 0.729140 CATTTTTCGCGGTGGCAGAC 60.729 55.000 6.13 0.00 39.92 3.51
2625 2911 1.228245 GTGACCCCAGCAAAGCTCA 60.228 57.895 0.00 0.00 36.40 4.26
2632 2918 1.264045 TGATCGATGTGACCCCAGCA 61.264 55.000 0.54 0.00 0.00 4.41
2742 3028 2.030893 ACACACGCATCCATGAACAAAG 60.031 45.455 0.00 0.00 0.00 2.77
2807 3093 9.396022 CCAAGACAACCAGACATTTTATACTAT 57.604 33.333 0.00 0.00 0.00 2.12
2903 3322 3.322369 CAACAACAGGTGTAGCATACGA 58.678 45.455 0.00 0.00 46.99 3.43
2944 3364 4.155826 CGAAGTTTGGTGCTAATTCATGGA 59.844 41.667 0.00 0.00 0.00 3.41
3009 3683 3.814005 TTTAGAACGGAGGGAGTATGC 57.186 47.619 0.00 0.00 0.00 3.14
3012 3686 5.297776 CGAGTAATTTAGAACGGAGGGAGTA 59.702 44.000 0.00 0.00 0.00 2.59
3013 3687 4.097589 CGAGTAATTTAGAACGGAGGGAGT 59.902 45.833 0.00 0.00 0.00 3.85
3014 3688 4.097589 ACGAGTAATTTAGAACGGAGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
3015 3689 4.019174 ACGAGTAATTTAGAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
3016 3690 4.357996 GACGAGTAATTTAGAACGGAGGG 58.642 47.826 0.00 0.00 0.00 4.30
3017 3691 4.033684 CGACGAGTAATTTAGAACGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
3018 3692 3.481388 GCGACGAGTAATTTAGAACGGAG 59.519 47.826 0.00 0.00 0.00 4.63
3019 3693 3.127548 AGCGACGAGTAATTTAGAACGGA 59.872 43.478 0.00 0.00 0.00 4.69
3020 3694 3.239941 CAGCGACGAGTAATTTAGAACGG 59.760 47.826 0.00 0.00 0.00 4.44
3021 3695 4.093514 TCAGCGACGAGTAATTTAGAACG 58.906 43.478 0.00 0.00 0.00 3.95
3022 3696 6.385537 TTTCAGCGACGAGTAATTTAGAAC 57.614 37.500 0.00 0.00 0.00 3.01
3023 3697 8.186163 TCTATTTCAGCGACGAGTAATTTAGAA 58.814 33.333 0.00 0.00 0.00 2.10
3024 3698 7.700505 TCTATTTCAGCGACGAGTAATTTAGA 58.299 34.615 0.00 0.00 0.00 2.10
3025 3699 7.909777 TCTATTTCAGCGACGAGTAATTTAG 57.090 36.000 0.00 0.00 0.00 1.85
3026 3700 7.919091 ACATCTATTTCAGCGACGAGTAATTTA 59.081 33.333 0.00 0.00 0.00 1.40
3027 3701 6.757010 ACATCTATTTCAGCGACGAGTAATTT 59.243 34.615 0.00 0.00 0.00 1.82
3028 3702 6.273825 ACATCTATTTCAGCGACGAGTAATT 58.726 36.000 0.00 0.00 0.00 1.40
3029 3703 5.833082 ACATCTATTTCAGCGACGAGTAAT 58.167 37.500 0.00 0.00 0.00 1.89
3030 3704 5.244785 ACATCTATTTCAGCGACGAGTAA 57.755 39.130 0.00 0.00 0.00 2.24
3031 3705 4.895224 ACATCTATTTCAGCGACGAGTA 57.105 40.909 0.00 0.00 0.00 2.59
3032 3706 3.784701 ACATCTATTTCAGCGACGAGT 57.215 42.857 0.00 0.00 0.00 4.18
3033 3707 6.755461 AAATACATCTATTTCAGCGACGAG 57.245 37.500 0.00 0.00 27.83 4.18
3034 3708 8.637281 TTTAAATACATCTATTTCAGCGACGA 57.363 30.769 0.00 0.00 34.83 4.20
3035 3709 9.144085 GTTTTAAATACATCTATTTCAGCGACG 57.856 33.333 0.00 0.00 34.83 5.12
3066 3740 8.336080 CGCACGTATAGATGTATGTAGATGTAT 58.664 37.037 0.00 0.00 0.00 2.29
3067 3741 7.546667 TCGCACGTATAGATGTATGTAGATGTA 59.453 37.037 0.00 0.00 0.00 2.29
3068 3742 6.370718 TCGCACGTATAGATGTATGTAGATGT 59.629 38.462 0.00 0.00 0.00 3.06
3069 3743 6.772078 TCGCACGTATAGATGTATGTAGATG 58.228 40.000 0.00 0.00 0.00 2.90
3070 3744 6.980051 TCGCACGTATAGATGTATGTAGAT 57.020 37.500 0.00 0.00 0.00 1.98
3071 3745 6.980051 ATCGCACGTATAGATGTATGTAGA 57.020 37.500 0.00 0.00 0.00 2.59
3072 3746 8.388853 ACTTATCGCACGTATAGATGTATGTAG 58.611 37.037 9.08 0.00 0.00 2.74
3073 3747 8.260270 ACTTATCGCACGTATAGATGTATGTA 57.740 34.615 9.08 0.00 0.00 2.29
3074 3748 7.142306 ACTTATCGCACGTATAGATGTATGT 57.858 36.000 9.08 2.22 0.00 2.29
3075 3749 9.717892 ATTACTTATCGCACGTATAGATGTATG 57.282 33.333 9.08 1.78 0.00 2.39
3078 3752 9.770503 CTAATTACTTATCGCACGTATAGATGT 57.229 33.333 9.08 3.73 0.00 3.06
3079 3753 9.222916 CCTAATTACTTATCGCACGTATAGATG 57.777 37.037 9.08 0.00 0.00 2.90
3080 3754 8.404000 CCCTAATTACTTATCGCACGTATAGAT 58.596 37.037 0.00 0.00 0.00 1.98
3081 3755 7.607607 TCCCTAATTACTTATCGCACGTATAGA 59.392 37.037 0.00 0.00 0.00 1.98
3082 3756 7.755591 TCCCTAATTACTTATCGCACGTATAG 58.244 38.462 0.00 0.00 0.00 1.31
3083 3757 7.391554 ACTCCCTAATTACTTATCGCACGTATA 59.608 37.037 0.00 0.00 0.00 1.47
3084 3758 6.208204 ACTCCCTAATTACTTATCGCACGTAT 59.792 38.462 0.00 0.00 0.00 3.06
3085 3759 5.532406 ACTCCCTAATTACTTATCGCACGTA 59.468 40.000 0.00 0.00 0.00 3.57
3086 3760 4.340381 ACTCCCTAATTACTTATCGCACGT 59.660 41.667 0.00 0.00 0.00 4.49
3087 3761 4.868067 ACTCCCTAATTACTTATCGCACG 58.132 43.478 0.00 0.00 0.00 5.34
3088 3762 6.979465 ACTACTCCCTAATTACTTATCGCAC 58.021 40.000 0.00 0.00 0.00 5.34
3089 3763 7.094463 GCTACTACTCCCTAATTACTTATCGCA 60.094 40.741 0.00 0.00 0.00 5.10
3090 3764 7.121020 AGCTACTACTCCCTAATTACTTATCGC 59.879 40.741 0.00 0.00 0.00 4.58
3091 3765 8.452534 CAGCTACTACTCCCTAATTACTTATCG 58.547 40.741 0.00 0.00 0.00 2.92
3092 3766 8.741841 CCAGCTACTACTCCCTAATTACTTATC 58.258 40.741 0.00 0.00 0.00 1.75
3093 3767 7.178805 GCCAGCTACTACTCCCTAATTACTTAT 59.821 40.741 0.00 0.00 0.00 1.73
3094 3768 6.492772 GCCAGCTACTACTCCCTAATTACTTA 59.507 42.308 0.00 0.00 0.00 2.24
3095 3769 5.304871 GCCAGCTACTACTCCCTAATTACTT 59.695 44.000 0.00 0.00 0.00 2.24
3096 3770 4.833938 GCCAGCTACTACTCCCTAATTACT 59.166 45.833 0.00 0.00 0.00 2.24
3097 3771 4.587684 TGCCAGCTACTACTCCCTAATTAC 59.412 45.833 0.00 0.00 0.00 1.89
3098 3772 4.811498 TGCCAGCTACTACTCCCTAATTA 58.189 43.478 0.00 0.00 0.00 1.40
3099 3773 3.654273 TGCCAGCTACTACTCCCTAATT 58.346 45.455 0.00 0.00 0.00 1.40
3100 3774 3.330126 TGCCAGCTACTACTCCCTAAT 57.670 47.619 0.00 0.00 0.00 1.73
3101 3775 2.840640 TGCCAGCTACTACTCCCTAA 57.159 50.000 0.00 0.00 0.00 2.69
3102 3776 2.965831 CAATGCCAGCTACTACTCCCTA 59.034 50.000 0.00 0.00 0.00 3.53
3103 3777 1.765314 CAATGCCAGCTACTACTCCCT 59.235 52.381 0.00 0.00 0.00 4.20
3104 3778 1.811941 GCAATGCCAGCTACTACTCCC 60.812 57.143 0.00 0.00 0.00 4.30
3105 3779 1.134401 TGCAATGCCAGCTACTACTCC 60.134 52.381 1.53 0.00 0.00 3.85
3106 3780 2.159043 TCTGCAATGCCAGCTACTACTC 60.159 50.000 1.53 0.00 32.87 2.59
3107 3781 1.833630 TCTGCAATGCCAGCTACTACT 59.166 47.619 1.53 0.00 32.87 2.57
3108 3782 2.159043 TCTCTGCAATGCCAGCTACTAC 60.159 50.000 1.53 0.00 32.87 2.73
3115 3789 6.709397 TCTTATATTCTTCTCTGCAATGCCAG 59.291 38.462 1.53 0.00 0.00 4.85
3144 3818 3.312504 CATCGGCGTCGTGCTACG 61.313 66.667 10.18 2.79 45.43 3.51
3169 3843 6.321821 ACACCTAATCAATAGCAAAGGGTA 57.678 37.500 0.00 0.00 0.00 3.69
3411 4091 1.079405 GACCGACCGGCTGATCAAA 60.079 57.895 8.55 0.00 39.32 2.69
3465 4145 7.342799 AGCACATGGACACCTATGAAATTATTT 59.657 33.333 0.00 0.00 0.00 1.40
3468 4148 5.754782 AGCACATGGACACCTATGAAATTA 58.245 37.500 0.00 0.00 0.00 1.40
3499 4179 0.541863 GGACGACCATGTGGAGGAAT 59.458 55.000 5.96 0.00 38.94 3.01
3545 4225 2.419021 CGACTCTCGGTTCTCTAGGACT 60.419 54.545 0.00 0.00 36.00 3.85
3556 4236 0.611062 TGGTTGGATCGACTCTCGGT 60.611 55.000 0.00 0.00 40.88 4.69
3559 4239 2.099427 GGTAGTGGTTGGATCGACTCTC 59.901 54.545 0.00 0.00 0.00 3.20
3579 4259 4.793216 CGGCAAAAATCTATCACGAAAAGG 59.207 41.667 0.00 0.00 0.00 3.11
3658 4338 0.795698 TGAACGCAACGGATCATGTG 59.204 50.000 0.00 0.00 0.00 3.21
3691 4371 7.825270 TGATCAGCCTAATTTTCAATTGCATTT 59.175 29.630 0.00 0.00 0.00 2.32
3755 4435 6.591935 TCGAAAGCACTATCATTTAGGGATT 58.408 36.000 0.00 0.00 0.00 3.01
3789 4469 9.343539 ACTTTCAGAAATACTTTAAGCACTTCT 57.656 29.630 0.00 0.00 0.00 2.85
3798 4478 7.651704 GGCTGCAAAACTTTCAGAAATACTTTA 59.348 33.333 0.50 0.00 0.00 1.85
3810 4490 3.715628 TCTTCTGGCTGCAAAACTTTC 57.284 42.857 0.50 0.00 0.00 2.62
3876 4556 0.943835 GGGCAATCAAAACGGTGTGC 60.944 55.000 0.00 0.00 0.00 4.57
3900 4580 8.402472 TGGCATGCACTATTTGTATTAACTTAC 58.598 33.333 21.36 0.00 0.00 2.34
3939 4619 1.004745 AGATCAATTTGGTGGCTCCGT 59.995 47.619 0.53 0.00 39.52 4.69
4009 4689 8.184192 CGAACAATATGAAATTAAGCTTCAGGT 58.816 33.333 0.00 0.00 36.30 4.00
4010 4690 7.645340 CCGAACAATATGAAATTAAGCTTCAGG 59.355 37.037 0.00 0.00 36.30 3.86
4011 4691 7.166473 GCCGAACAATATGAAATTAAGCTTCAG 59.834 37.037 0.00 0.00 36.30 3.02
4012 4692 6.972328 GCCGAACAATATGAAATTAAGCTTCA 59.028 34.615 0.00 0.00 37.22 3.02
4013 4693 7.166473 CAGCCGAACAATATGAAATTAAGCTTC 59.834 37.037 0.00 0.00 0.00 3.86
4014 4694 6.974622 CAGCCGAACAATATGAAATTAAGCTT 59.025 34.615 3.48 3.48 0.00 3.74
4015 4695 6.095440 ACAGCCGAACAATATGAAATTAAGCT 59.905 34.615 0.00 0.00 0.00 3.74
4016 4696 6.197096 CACAGCCGAACAATATGAAATTAAGC 59.803 38.462 0.00 0.00 0.00 3.09
4017 4697 7.429340 GTCACAGCCGAACAATATGAAATTAAG 59.571 37.037 0.00 0.00 0.00 1.85
4018 4698 7.247728 GTCACAGCCGAACAATATGAAATTAA 58.752 34.615 0.00 0.00 0.00 1.40
4019 4699 6.456315 CGTCACAGCCGAACAATATGAAATTA 60.456 38.462 0.00 0.00 0.00 1.40
4020 4700 5.640732 GTCACAGCCGAACAATATGAAATT 58.359 37.500 0.00 0.00 0.00 1.82
4021 4701 4.201812 CGTCACAGCCGAACAATATGAAAT 60.202 41.667 0.00 0.00 0.00 2.17
4022 4702 3.124466 CGTCACAGCCGAACAATATGAAA 59.876 43.478 0.00 0.00 0.00 2.69
4023 4703 2.670905 CGTCACAGCCGAACAATATGAA 59.329 45.455 0.00 0.00 0.00 2.57
4024 4704 2.267426 CGTCACAGCCGAACAATATGA 58.733 47.619 0.00 0.00 0.00 2.15
4025 4705 1.999735 ACGTCACAGCCGAACAATATG 59.000 47.619 0.00 0.00 0.00 1.78
4041 4721 3.859961 CACCAATCACACTATCTGACGTC 59.140 47.826 9.11 9.11 0.00 4.34
4044 4724 3.599343 TGCACCAATCACACTATCTGAC 58.401 45.455 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.