Multiple sequence alignment - TraesCS5B01G118200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G118200 chr5B 100.000 3727 0 0 1 3727 208700502 208704228 0.000000e+00 6883
1 TraesCS5B01G118200 chr5B 94.898 588 25 4 3142 3726 474050327 474050912 0.000000e+00 915
2 TraesCS5B01G118200 chr5B 91.628 215 14 3 2916 3129 420576071 420575860 1.010000e-75 294
3 TraesCS5B01G118200 chr5B 81.421 366 48 15 6 357 666649465 666649106 7.880000e-72 281
4 TraesCS5B01G118200 chr5B 95.161 62 3 0 2383 2444 208702842 208702903 8.520000e-17 99
5 TraesCS5B01G118200 chr5B 95.161 62 3 0 2341 2402 208702884 208702945 8.520000e-17 99
6 TraesCS5B01G118200 chr5D 93.317 1616 57 26 353 1930 203060399 203058797 0.000000e+00 2338
7 TraesCS5B01G118200 chr5D 96.053 532 16 3 2389 2915 203058421 203057890 0.000000e+00 861
8 TraesCS5B01G118200 chr5D 96.583 439 13 1 1966 2402 203058804 203058366 0.000000e+00 726
9 TraesCS5B01G118200 chr5D 80.000 370 55 6 3 353 502654037 502654406 4.780000e-64 255
10 TraesCS5B01G118200 chr5D 86.857 175 16 7 191 360 548534141 548534313 4.910000e-44 189
11 TraesCS5B01G118200 chr5D 84.706 170 26 0 2158 2327 353795667 353795836 1.780000e-38 171
12 TraesCS5B01G118200 chr5A 92.287 1115 50 14 352 1438 219697423 219696317 0.000000e+00 1550
13 TraesCS5B01G118200 chr5A 95.455 528 16 4 2394 2913 219695371 219694844 0.000000e+00 835
14 TraesCS5B01G118200 chr5A 94.533 439 21 2 1966 2402 219695758 219695321 0.000000e+00 675
15 TraesCS5B01G118200 chr5A 84.687 431 20 19 1511 1930 219696146 219695751 4.510000e-104 388
16 TraesCS5B01G118200 chr6A 96.246 586 21 1 3142 3726 576398650 576398065 0.000000e+00 959
17 TraesCS5B01G118200 chr6A 95.911 538 20 2 3190 3726 576224465 576223929 0.000000e+00 870
18 TraesCS5B01G118200 chr6A 96.739 184 6 0 2916 3099 576227259 576227076 1.300000e-79 307
19 TraesCS5B01G118200 chr6A 95.652 184 6 2 2916 3099 576399230 576399049 1.010000e-75 294
20 TraesCS5B01G118200 chr2D 96.082 587 18 2 3142 3726 553250192 553250775 0.000000e+00 952
21 TraesCS5B01G118200 chr2D 97.030 202 6 0 2912 3113 553249591 553249792 1.280000e-89 340
22 TraesCS5B01G118200 chr2D 81.006 358 56 6 6 351 323621843 323622200 1.320000e-69 274
23 TraesCS5B01G118200 chr2D 81.268 347 53 7 17 353 54021904 54022248 1.710000e-68 270
24 TraesCS5B01G118200 chr3A 89.831 590 50 8 3142 3726 680763856 680763272 0.000000e+00 749
25 TraesCS5B01G118200 chr3A 91.667 228 19 0 2916 3143 680764242 680764015 2.160000e-82 316
26 TraesCS5B01G118200 chr3A 89.944 179 16 2 2154 2331 629228104 629227927 2.900000e-56 230
27 TraesCS5B01G118200 chr7A 90.119 587 41 11 3144 3726 148176523 148175950 0.000000e+00 747
28 TraesCS5B01G118200 chr7A 81.016 374 50 6 1 353 736084840 736085213 1.020000e-70 278
29 TraesCS5B01G118200 chrUn 88.702 593 51 11 3142 3726 927416 928000 0.000000e+00 710
30 TraesCS5B01G118200 chrUn 88.702 593 51 11 3142 3726 952291 951707 0.000000e+00 710
31 TraesCS5B01G118200 chr1A 88.702 593 51 11 3142 3726 514590636 514591220 0.000000e+00 710
32 TraesCS5B01G118200 chr1A 80.311 386 49 12 1 361 16476296 16475913 2.210000e-67 267
33 TraesCS5B01G118200 chr1A 89.385 179 17 2 2154 2331 465496867 465497044 1.350000e-54 224
34 TraesCS5B01G118200 chr3D 82.038 373 44 12 1 362 477914817 477915177 2.810000e-76 296
35 TraesCS5B01G118200 chr3D 79.328 387 51 12 1 361 569513274 569512891 1.030000e-60 244
36 TraesCS5B01G118200 chr3D 89.418 189 18 2 2144 2331 486050787 486050600 1.730000e-58 237
37 TraesCS5B01G118200 chr3D 86.239 218 29 1 2916 3133 573720304 573720088 6.220000e-58 235
38 TraesCS5B01G118200 chr3D 78.836 378 47 20 1 355 13717453 13717086 1.350000e-54 224
39 TraesCS5B01G118200 chr7D 81.765 340 50 6 6 335 469897966 469897629 1.320000e-69 274
40 TraesCS5B01G118200 chr7D 79.784 371 53 17 8 361 32988328 32987963 2.220000e-62 250
41 TraesCS5B01G118200 chr4D 86.818 220 25 4 2916 3133 423884628 423884411 3.720000e-60 243
42 TraesCS5B01G118200 chr6B 85.903 227 28 4 2915 3140 142737330 142737107 4.810000e-59 239
43 TraesCS5B01G118200 chr6D 86.574 216 28 1 2919 3133 445410972 445410757 1.730000e-58 237
44 TraesCS5B01G118200 chr3B 89.944 179 16 2 2154 2331 648747020 648746843 2.900000e-56 230
45 TraesCS5B01G118200 chr3B 79.856 278 36 12 1 258 139735650 139735927 6.360000e-43 185
46 TraesCS5B01G118200 chr3B 84.324 185 24 4 173 353 711350495 711350312 3.830000e-40 176
47 TraesCS5B01G118200 chr1D 89.385 179 17 2 2154 2331 366475669 366475492 1.350000e-54 224
48 TraesCS5B01G118200 chr1D 83.654 208 30 4 143 347 483314614 483314820 3.800000e-45 193
49 TraesCS5B01G118200 chr1B 88.827 179 18 2 2154 2331 491232546 491232723 6.270000e-53 219
50 TraesCS5B01G118200 chr2B 80.656 305 35 9 6 287 483685977 483686280 8.110000e-52 215
51 TraesCS5B01G118200 chr7B 86.667 195 18 6 185 374 327460877 327460686 3.770000e-50 209
52 TraesCS5B01G118200 chr7B 86.628 172 20 3 185 353 528922977 528922806 1.770000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G118200 chr5B 208700502 208704228 3726 False 2360.333333 6883 96.774000 1 3727 3 chr5B.!!$F2 3726
1 TraesCS5B01G118200 chr5B 474050327 474050912 585 False 915.000000 915 94.898000 3142 3726 1 chr5B.!!$F1 584
2 TraesCS5B01G118200 chr5D 203057890 203060399 2509 True 1308.333333 2338 95.317667 353 2915 3 chr5D.!!$R1 2562
3 TraesCS5B01G118200 chr5A 219694844 219697423 2579 True 862.000000 1550 91.740500 352 2913 4 chr5A.!!$R1 2561
4 TraesCS5B01G118200 chr6A 576398065 576399230 1165 True 626.500000 959 95.949000 2916 3726 2 chr6A.!!$R2 810
5 TraesCS5B01G118200 chr6A 576223929 576227259 3330 True 588.500000 870 96.325000 2916 3726 2 chr6A.!!$R1 810
6 TraesCS5B01G118200 chr2D 553249591 553250775 1184 False 646.000000 952 96.556000 2912 3726 2 chr2D.!!$F3 814
7 TraesCS5B01G118200 chr3A 680763272 680764242 970 True 532.500000 749 90.749000 2916 3726 2 chr3A.!!$R2 810
8 TraesCS5B01G118200 chr7A 148175950 148176523 573 True 747.000000 747 90.119000 3144 3726 1 chr7A.!!$R1 582
9 TraesCS5B01G118200 chrUn 927416 928000 584 False 710.000000 710 88.702000 3142 3726 1 chrUn.!!$F1 584
10 TraesCS5B01G118200 chrUn 951707 952291 584 True 710.000000 710 88.702000 3142 3726 1 chrUn.!!$R1 584
11 TraesCS5B01G118200 chr1A 514590636 514591220 584 False 710.000000 710 88.702000 3142 3726 1 chr1A.!!$F2 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.098025 GACAGAGGAGACGAGCTTCG 59.902 60.0 0.00 0.0 46.93 3.79 F
172 173 0.741221 GTGAGTTCCCGACATCAGCC 60.741 60.0 0.00 0.0 0.00 4.85 F
1164 1199 0.398522 AGGAGATGTCGGCCATGGTA 60.399 55.0 14.67 0.0 32.56 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1112 1147 0.462375 CCCCCACATCGTCGTATTGA 59.538 55.000 0.0 0.0 0.0 2.57 R
1324 1359 0.611618 TACGTACCGGCAAGGAAGGA 60.612 55.000 0.0 0.0 45.0 3.36 R
2746 2896 1.205064 CGGCTTCGCTTTGACTGTG 59.795 57.895 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.110493 GACGAGCGGAGGGAAATG 57.890 61.111 0.00 0.00 0.00 2.32
18 19 1.218316 GACGAGCGGAGGGAAATGT 59.782 57.895 0.00 0.00 0.00 2.71
19 20 1.079127 ACGAGCGGAGGGAAATGTG 60.079 57.895 0.00 0.00 0.00 3.21
20 21 1.815421 CGAGCGGAGGGAAATGTGG 60.815 63.158 0.00 0.00 0.00 4.17
21 22 1.602237 GAGCGGAGGGAAATGTGGA 59.398 57.895 0.00 0.00 0.00 4.02
22 23 0.462759 GAGCGGAGGGAAATGTGGAG 60.463 60.000 0.00 0.00 0.00 3.86
23 24 1.452108 GCGGAGGGAAATGTGGAGG 60.452 63.158 0.00 0.00 0.00 4.30
24 25 1.224592 CGGAGGGAAATGTGGAGGG 59.775 63.158 0.00 0.00 0.00 4.30
25 26 1.615262 GGAGGGAAATGTGGAGGGG 59.385 63.158 0.00 0.00 0.00 4.79
26 27 1.214992 GGAGGGAAATGTGGAGGGGT 61.215 60.000 0.00 0.00 0.00 4.95
27 28 1.591768 GAGGGAAATGTGGAGGGGTA 58.408 55.000 0.00 0.00 0.00 3.69
28 29 1.490910 GAGGGAAATGTGGAGGGGTAG 59.509 57.143 0.00 0.00 0.00 3.18
29 30 0.551396 GGGAAATGTGGAGGGGTAGG 59.449 60.000 0.00 0.00 0.00 3.18
30 31 0.551396 GGAAATGTGGAGGGGTAGGG 59.449 60.000 0.00 0.00 0.00 3.53
31 32 1.296002 GAAATGTGGAGGGGTAGGGT 58.704 55.000 0.00 0.00 0.00 4.34
32 33 1.639108 GAAATGTGGAGGGGTAGGGTT 59.361 52.381 0.00 0.00 0.00 4.11
33 34 1.768265 AATGTGGAGGGGTAGGGTTT 58.232 50.000 0.00 0.00 0.00 3.27
34 35 1.296002 ATGTGGAGGGGTAGGGTTTC 58.704 55.000 0.00 0.00 0.00 2.78
35 36 1.196104 TGTGGAGGGGTAGGGTTTCG 61.196 60.000 0.00 0.00 0.00 3.46
36 37 1.614226 TGGAGGGGTAGGGTTTCGG 60.614 63.158 0.00 0.00 0.00 4.30
37 38 1.614525 GGAGGGGTAGGGTTTCGGT 60.615 63.158 0.00 0.00 0.00 4.69
38 39 1.600638 GAGGGGTAGGGTTTCGGTG 59.399 63.158 0.00 0.00 0.00 4.94
39 40 2.045634 GGGGTAGGGTTTCGGTGC 60.046 66.667 0.00 0.00 0.00 5.01
40 41 2.045634 GGGTAGGGTTTCGGTGCC 60.046 66.667 0.00 0.00 0.00 5.01
41 42 2.435410 GGTAGGGTTTCGGTGCCG 60.435 66.667 3.94 3.94 41.35 5.69
42 43 2.435410 GTAGGGTTTCGGTGCCGG 60.435 66.667 10.94 0.00 40.25 6.13
43 44 2.924101 TAGGGTTTCGGTGCCGGT 60.924 61.111 10.94 0.00 40.25 5.28
44 45 3.242897 TAGGGTTTCGGTGCCGGTG 62.243 63.158 10.94 0.00 40.25 4.94
56 57 4.337013 CCGGTGGCTGGCTTAAAT 57.663 55.556 2.00 0.00 0.00 1.40
57 58 3.487576 CCGGTGGCTGGCTTAAATA 57.512 52.632 2.00 0.00 0.00 1.40
58 59 1.308998 CCGGTGGCTGGCTTAAATAG 58.691 55.000 2.00 0.00 0.00 1.73
59 60 1.408266 CCGGTGGCTGGCTTAAATAGT 60.408 52.381 2.00 0.00 0.00 2.12
60 61 1.940613 CGGTGGCTGGCTTAAATAGTC 59.059 52.381 2.00 0.00 0.00 2.59
61 62 2.679639 CGGTGGCTGGCTTAAATAGTCA 60.680 50.000 2.00 0.00 35.72 3.41
68 69 4.689612 TGGCTTAAATAGTCAGGCTAGG 57.310 45.455 0.00 0.00 32.31 3.02
69 70 3.181454 TGGCTTAAATAGTCAGGCTAGGC 60.181 47.826 8.55 8.55 32.31 3.93
70 71 3.181454 GGCTTAAATAGTCAGGCTAGGCA 60.181 47.826 19.70 0.00 32.45 4.75
71 72 3.810386 GCTTAAATAGTCAGGCTAGGCAC 59.190 47.826 19.70 8.88 32.45 5.01
72 73 4.443598 GCTTAAATAGTCAGGCTAGGCACT 60.444 45.833 19.70 15.89 46.37 4.40
73 74 5.221461 GCTTAAATAGTCAGGCTAGGCACTA 60.221 44.000 19.70 17.51 41.75 2.74
74 75 4.674281 AAATAGTCAGGCTAGGCACTAC 57.326 45.455 19.70 12.64 41.75 2.73
75 76 2.820728 TAGTCAGGCTAGGCACTACA 57.179 50.000 19.70 0.00 41.75 2.74
76 77 1.187087 AGTCAGGCTAGGCACTACAC 58.813 55.000 19.70 6.99 41.75 2.90
77 78 0.179134 GTCAGGCTAGGCACTACACG 60.179 60.000 19.70 0.00 41.75 4.49
78 79 1.141881 CAGGCTAGGCACTACACGG 59.858 63.158 19.70 0.00 41.75 4.94
79 80 2.202892 GGCTAGGCACTACACGGC 60.203 66.667 12.16 0.00 41.75 5.68
115 116 4.492160 GCGGCGACATCGGTCTGA 62.492 66.667 12.98 0.00 42.05 3.27
116 117 2.579787 CGGCGACATCGGTCTGAC 60.580 66.667 0.00 0.00 42.05 3.51
117 118 2.571757 GGCGACATCGGTCTGACA 59.428 61.111 10.38 0.00 42.05 3.58
118 119 1.517257 GGCGACATCGGTCTGACAG 60.517 63.158 10.38 5.82 42.05 3.51
119 120 1.506718 GCGACATCGGTCTGACAGA 59.493 57.895 12.85 12.85 42.05 3.41
120 121 0.524392 GCGACATCGGTCTGACAGAG 60.524 60.000 15.45 10.20 42.05 3.35
121 122 0.099613 CGACATCGGTCTGACAGAGG 59.900 60.000 18.42 18.42 42.05 3.69
122 123 1.464734 GACATCGGTCTGACAGAGGA 58.535 55.000 24.91 7.00 40.99 3.71
123 124 1.403679 GACATCGGTCTGACAGAGGAG 59.596 57.143 24.91 15.02 40.99 3.69
124 125 1.004862 ACATCGGTCTGACAGAGGAGA 59.995 52.381 24.91 6.18 29.26 3.71
125 126 1.403679 CATCGGTCTGACAGAGGAGAC 59.596 57.143 15.74 0.00 38.32 3.36
126 127 0.673956 TCGGTCTGACAGAGGAGACG 60.674 60.000 5.10 6.29 39.69 4.18
127 128 0.673956 CGGTCTGACAGAGGAGACGA 60.674 60.000 5.10 0.00 39.69 4.20
128 129 1.091537 GGTCTGACAGAGGAGACGAG 58.908 60.000 5.10 0.00 39.69 4.18
129 130 0.450184 GTCTGACAGAGGAGACGAGC 59.550 60.000 5.10 0.00 29.86 5.03
130 131 0.326595 TCTGACAGAGGAGACGAGCT 59.673 55.000 0.00 0.00 0.00 4.09
131 132 1.173043 CTGACAGAGGAGACGAGCTT 58.827 55.000 0.00 0.00 0.00 3.74
132 133 1.132262 CTGACAGAGGAGACGAGCTTC 59.868 57.143 0.00 0.00 0.00 3.86
133 134 0.098025 GACAGAGGAGACGAGCTTCG 59.902 60.000 0.00 0.00 46.93 3.79
134 135 1.309499 ACAGAGGAGACGAGCTTCGG 61.309 60.000 9.75 0.00 45.59 4.30
135 136 1.027255 CAGAGGAGACGAGCTTCGGA 61.027 60.000 9.75 0.00 45.59 4.55
136 137 1.027792 AGAGGAGACGAGCTTCGGAC 61.028 60.000 9.75 4.49 45.59 4.79
137 138 1.995646 GAGGAGACGAGCTTCGGACC 61.996 65.000 9.75 9.05 45.59 4.46
138 139 2.100603 GAGACGAGCTTCGGACCG 59.899 66.667 7.84 7.84 45.59 4.79
139 140 4.117661 AGACGAGCTTCGGACCGC 62.118 66.667 9.66 0.00 45.59 5.68
161 162 3.384927 CGATTCCGCGTGAGTTCC 58.615 61.111 4.92 0.00 0.00 3.62
162 163 2.165301 CGATTCCGCGTGAGTTCCC 61.165 63.158 4.92 0.00 0.00 3.97
163 164 2.125673 ATTCCGCGTGAGTTCCCG 60.126 61.111 4.92 0.00 0.00 5.14
164 165 2.552585 GATTCCGCGTGAGTTCCCGA 62.553 60.000 4.92 0.00 0.00 5.14
165 166 2.830704 ATTCCGCGTGAGTTCCCGAC 62.831 60.000 4.92 0.00 0.00 4.79
166 167 4.351938 CCGCGTGAGTTCCCGACA 62.352 66.667 4.92 0.00 0.00 4.35
167 168 2.126071 CGCGTGAGTTCCCGACAT 60.126 61.111 0.00 0.00 0.00 3.06
168 169 2.158959 CGCGTGAGTTCCCGACATC 61.159 63.158 0.00 0.00 0.00 3.06
169 170 1.080093 GCGTGAGTTCCCGACATCA 60.080 57.895 0.00 0.00 0.00 3.07
170 171 1.078759 GCGTGAGTTCCCGACATCAG 61.079 60.000 0.00 0.00 0.00 2.90
171 172 1.078759 CGTGAGTTCCCGACATCAGC 61.079 60.000 0.00 0.00 0.00 4.26
172 173 0.741221 GTGAGTTCCCGACATCAGCC 60.741 60.000 0.00 0.00 0.00 4.85
173 174 1.153349 GAGTTCCCGACATCAGCCC 60.153 63.158 0.00 0.00 0.00 5.19
174 175 2.511600 GTTCCCGACATCAGCCCG 60.512 66.667 0.00 0.00 0.00 6.13
175 176 2.682136 TTCCCGACATCAGCCCGA 60.682 61.111 0.00 0.00 0.00 5.14
176 177 3.014085 TTCCCGACATCAGCCCGAC 62.014 63.158 0.00 0.00 0.00 4.79
177 178 3.770040 CCCGACATCAGCCCGACA 61.770 66.667 0.00 0.00 0.00 4.35
178 179 2.501128 CCGACATCAGCCCGACAT 59.499 61.111 0.00 0.00 0.00 3.06
179 180 1.884464 CCGACATCAGCCCGACATG 60.884 63.158 0.00 0.00 0.00 3.21
180 181 1.141665 CGACATCAGCCCGACATGA 59.858 57.895 0.00 0.00 0.00 3.07
181 182 1.148157 CGACATCAGCCCGACATGAC 61.148 60.000 0.00 0.00 0.00 3.06
182 183 1.148157 GACATCAGCCCGACATGACG 61.148 60.000 10.68 10.68 0.00 4.35
183 184 1.141665 CATCAGCCCGACATGACGA 59.858 57.895 19.00 0.00 35.09 4.20
184 185 0.873312 CATCAGCCCGACATGACGAG 60.873 60.000 19.00 6.96 35.09 4.18
185 186 2.635229 ATCAGCCCGACATGACGAGC 62.635 60.000 19.00 17.18 37.28 5.03
186 187 4.498520 AGCCCGACATGACGAGCG 62.499 66.667 19.00 6.98 41.53 5.03
209 210 4.660938 GGGCGCCCCATATCCACC 62.661 72.222 36.64 5.01 44.65 4.61
210 211 4.660938 GGCGCCCCATATCCACCC 62.661 72.222 18.11 0.00 0.00 4.61
211 212 3.570212 GCGCCCCATATCCACCCT 61.570 66.667 0.00 0.00 0.00 4.34
212 213 2.221299 GCGCCCCATATCCACCCTA 61.221 63.158 0.00 0.00 0.00 3.53
213 214 1.562672 GCGCCCCATATCCACCCTAT 61.563 60.000 0.00 0.00 0.00 2.57
214 215 0.991920 CGCCCCATATCCACCCTATT 59.008 55.000 0.00 0.00 0.00 1.73
215 216 1.354368 CGCCCCATATCCACCCTATTT 59.646 52.381 0.00 0.00 0.00 1.40
216 217 2.574369 CGCCCCATATCCACCCTATTTA 59.426 50.000 0.00 0.00 0.00 1.40
217 218 3.370527 CGCCCCATATCCACCCTATTTAG 60.371 52.174 0.00 0.00 0.00 1.85
218 219 3.053619 GCCCCATATCCACCCTATTTAGG 60.054 52.174 0.00 0.00 43.25 2.69
219 220 3.053619 CCCCATATCCACCCTATTTAGGC 60.054 52.174 0.00 0.00 42.26 3.93
220 221 3.852578 CCCATATCCACCCTATTTAGGCT 59.147 47.826 0.00 0.00 42.26 4.58
221 222 4.324563 CCCATATCCACCCTATTTAGGCTG 60.325 50.000 0.00 0.00 42.26 4.85
222 223 4.324563 CCATATCCACCCTATTTAGGCTGG 60.325 50.000 10.60 10.60 46.31 4.85
228 229 5.762179 CACCCTATTTAGGCTGGATATGA 57.238 43.478 0.00 0.00 42.26 2.15
229 230 5.738909 CACCCTATTTAGGCTGGATATGAG 58.261 45.833 0.00 0.00 42.26 2.90
230 231 4.785376 ACCCTATTTAGGCTGGATATGAGG 59.215 45.833 0.00 0.29 42.26 3.86
231 232 4.164988 CCCTATTTAGGCTGGATATGAGGG 59.835 50.000 0.00 0.85 42.26 4.30
232 233 4.164988 CCTATTTAGGCTGGATATGAGGGG 59.835 50.000 0.00 0.00 36.53 4.79
233 234 2.815357 TTAGGCTGGATATGAGGGGT 57.185 50.000 0.00 0.00 0.00 4.95
234 235 2.030027 TAGGCTGGATATGAGGGGTG 57.970 55.000 0.00 0.00 0.00 4.61
235 236 1.073897 GGCTGGATATGAGGGGTGC 59.926 63.158 0.00 0.00 0.00 5.01
236 237 1.073897 GCTGGATATGAGGGGTGCC 59.926 63.158 0.00 0.00 0.00 5.01
237 238 1.372683 CTGGATATGAGGGGTGCCG 59.627 63.158 0.00 0.00 0.00 5.69
238 239 2.116983 CTGGATATGAGGGGTGCCGG 62.117 65.000 0.00 0.00 0.00 6.13
239 240 2.147387 GGATATGAGGGGTGCCGGT 61.147 63.158 1.90 0.00 0.00 5.28
240 241 1.371558 GATATGAGGGGTGCCGGTC 59.628 63.158 1.90 0.00 0.00 4.79
241 242 1.383943 ATATGAGGGGTGCCGGTCA 60.384 57.895 1.90 0.00 0.00 4.02
242 243 1.410850 ATATGAGGGGTGCCGGTCAG 61.411 60.000 1.90 0.00 0.00 3.51
278 279 3.996614 CCGGCTGGGTCGAAATTT 58.003 55.556 2.57 0.00 29.41 1.82
279 280 1.506262 CCGGCTGGGTCGAAATTTG 59.494 57.895 2.57 0.00 29.41 2.32
280 281 0.958382 CCGGCTGGGTCGAAATTTGA 60.958 55.000 2.57 0.00 29.41 2.69
281 282 1.094785 CGGCTGGGTCGAAATTTGAT 58.905 50.000 0.00 0.00 29.41 2.57
282 283 1.202177 CGGCTGGGTCGAAATTTGATG 60.202 52.381 0.00 0.00 29.41 3.07
283 284 2.091541 GGCTGGGTCGAAATTTGATGA 58.908 47.619 0.00 0.00 0.00 2.92
284 285 2.159379 GGCTGGGTCGAAATTTGATGAC 60.159 50.000 0.00 0.83 0.00 3.06
287 288 2.825086 GGTCGAAATTTGATGACCGG 57.175 50.000 14.60 0.00 41.26 5.28
288 289 2.081462 GGTCGAAATTTGATGACCGGT 58.919 47.619 6.92 6.92 41.26 5.28
289 290 2.486592 GGTCGAAATTTGATGACCGGTT 59.513 45.455 9.42 0.00 41.26 4.44
290 291 3.685756 GGTCGAAATTTGATGACCGGTTA 59.314 43.478 9.42 4.40 41.26 2.85
291 292 4.201783 GGTCGAAATTTGATGACCGGTTAG 60.202 45.833 9.42 0.00 41.26 2.34
292 293 4.390909 GTCGAAATTTGATGACCGGTTAGT 59.609 41.667 9.42 0.00 0.00 2.24
293 294 4.390603 TCGAAATTTGATGACCGGTTAGTG 59.609 41.667 9.42 0.00 0.00 2.74
294 295 4.390603 CGAAATTTGATGACCGGTTAGTGA 59.609 41.667 9.42 0.00 0.00 3.41
295 296 5.622770 AAATTTGATGACCGGTTAGTGAC 57.377 39.130 9.42 0.00 0.00 3.67
296 297 2.754946 TTGATGACCGGTTAGTGACC 57.245 50.000 9.42 0.00 45.55 4.02
304 305 2.436115 GTTAGTGACCAGGCGGCC 60.436 66.667 12.11 12.11 34.57 6.13
305 306 3.712907 TTAGTGACCAGGCGGCCC 61.713 66.667 17.02 0.00 34.57 5.80
324 325 4.778143 CCCGGGCGTTTGAGGAGG 62.778 72.222 8.08 0.00 0.00 4.30
325 326 4.778143 CCGGGCGTTTGAGGAGGG 62.778 72.222 0.00 0.00 0.00 4.30
326 327 4.016706 CGGGCGTTTGAGGAGGGT 62.017 66.667 0.00 0.00 0.00 4.34
327 328 2.434774 GGGCGTTTGAGGAGGGTT 59.565 61.111 0.00 0.00 0.00 4.11
328 329 1.228459 GGGCGTTTGAGGAGGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
329 330 1.524008 GGGCGTTTGAGGAGGGTTTG 61.524 60.000 0.00 0.00 0.00 2.93
330 331 1.524008 GGCGTTTGAGGAGGGTTTGG 61.524 60.000 0.00 0.00 0.00 3.28
331 332 1.956802 CGTTTGAGGAGGGTTTGGC 59.043 57.895 0.00 0.00 0.00 4.52
332 333 1.852067 CGTTTGAGGAGGGTTTGGCG 61.852 60.000 0.00 0.00 0.00 5.69
333 334 0.822121 GTTTGAGGAGGGTTTGGCGT 60.822 55.000 0.00 0.00 0.00 5.68
334 335 0.821711 TTTGAGGAGGGTTTGGCGTG 60.822 55.000 0.00 0.00 0.00 5.34
335 336 3.056328 GAGGAGGGTTTGGCGTGC 61.056 66.667 0.00 0.00 0.00 5.34
336 337 4.660938 AGGAGGGTTTGGCGTGCC 62.661 66.667 3.30 3.30 0.00 5.01
410 412 6.231211 ACTTTGGACACTAGTTCAACCTATG 58.769 40.000 0.00 0.00 42.86 2.23
455 459 7.509546 TCAAGGGGCTATCTTTAAACTATGAG 58.490 38.462 0.00 0.00 0.00 2.90
506 510 4.018597 AGAGAGATTGTCCCTGAAGCAAAT 60.019 41.667 0.00 0.00 0.00 2.32
625 629 3.407698 ACAGAATTTGCACACGTCCATA 58.592 40.909 0.00 0.00 0.00 2.74
684 696 8.263640 AGTAGATCTAGATGAAACAAGCAATGT 58.736 33.333 10.74 0.00 46.82 2.71
725 737 1.410004 TGTGGGATCGTGGGTAGATC 58.590 55.000 0.00 0.00 42.68 2.75
752 768 5.061179 TCGATGTAGATCACTGTTCCGATA 58.939 41.667 0.29 0.00 0.00 2.92
866 896 1.808411 CCAGCACGTACACCTGAATT 58.192 50.000 6.11 0.00 0.00 2.17
877 907 3.701664 ACACCTGAATTTCTTCCCATCC 58.298 45.455 0.00 0.00 0.00 3.51
879 909 2.023984 ACCTGAATTTCTTCCCATCCCC 60.024 50.000 0.00 0.00 0.00 4.81
1102 1137 1.451028 GAGGAGCATGCACTGTCCC 60.451 63.158 21.98 10.39 0.00 4.46
1129 1164 2.543861 CCTCTCAATACGACGATGTGGG 60.544 54.545 0.00 0.00 0.00 4.61
1164 1199 0.398522 AGGAGATGTCGGCCATGGTA 60.399 55.000 14.67 0.00 32.56 3.25
1412 1448 5.954434 ACACGCATAAAACGATACGTAAT 57.046 34.783 0.00 0.00 39.99 1.89
1414 1450 6.855996 ACACGCATAAAACGATACGTAATAC 58.144 36.000 0.00 0.00 39.99 1.89
1415 1451 6.692681 ACACGCATAAAACGATACGTAATACT 59.307 34.615 0.00 0.00 39.99 2.12
1533 1667 5.823570 CGTACATCTTAGAGGGAGAGAGAAA 59.176 44.000 0.00 0.00 0.00 2.52
1588 1724 2.022764 TGATTGGGTAGATGTGCGTG 57.977 50.000 0.00 0.00 0.00 5.34
1624 1760 0.663568 GTCAGACACGTGTTCCTCGG 60.664 60.000 24.26 10.67 0.00 4.63
1646 1782 1.244019 CCTACAACAGGGCACAAGGC 61.244 60.000 0.00 0.00 41.26 4.35
1684 1820 4.759183 GCATGTTGGTCTTCTTCTTCTTCT 59.241 41.667 0.00 0.00 0.00 2.85
1685 1821 5.240403 GCATGTTGGTCTTCTTCTTCTTCTT 59.760 40.000 0.00 0.00 0.00 2.52
1686 1822 6.666417 CATGTTGGTCTTCTTCTTCTTCTTG 58.334 40.000 0.00 0.00 0.00 3.02
1762 1903 4.576463 ACAGTATGAAAGGAAATCCGCATC 59.424 41.667 8.19 3.15 39.69 3.91
1820 1968 2.674796 ACCTAGGCTGATTCGTGTTC 57.325 50.000 9.30 0.00 0.00 3.18
1915 2063 2.097142 GCAGGAAAGCAGAGCAACATAG 59.903 50.000 0.00 0.00 0.00 2.23
1917 2065 4.005650 CAGGAAAGCAGAGCAACATAGAA 58.994 43.478 0.00 0.00 0.00 2.10
1918 2066 4.456911 CAGGAAAGCAGAGCAACATAGAAA 59.543 41.667 0.00 0.00 0.00 2.52
1919 2067 4.699257 AGGAAAGCAGAGCAACATAGAAAG 59.301 41.667 0.00 0.00 0.00 2.62
1920 2068 4.697352 GGAAAGCAGAGCAACATAGAAAGA 59.303 41.667 0.00 0.00 0.00 2.52
1923 2071 6.639632 AAGCAGAGCAACATAGAAAGAAAA 57.360 33.333 0.00 0.00 0.00 2.29
1924 2072 6.639632 AGCAGAGCAACATAGAAAGAAAAA 57.360 33.333 0.00 0.00 0.00 1.94
1925 2073 7.224522 AGCAGAGCAACATAGAAAGAAAAAT 57.775 32.000 0.00 0.00 0.00 1.82
1926 2074 8.340618 AGCAGAGCAACATAGAAAGAAAAATA 57.659 30.769 0.00 0.00 0.00 1.40
1927 2075 8.239998 AGCAGAGCAACATAGAAAGAAAAATAC 58.760 33.333 0.00 0.00 0.00 1.89
1928 2076 8.023128 GCAGAGCAACATAGAAAGAAAAATACA 58.977 33.333 0.00 0.00 0.00 2.29
1929 2077 9.552114 CAGAGCAACATAGAAAGAAAAATACAG 57.448 33.333 0.00 0.00 0.00 2.74
1930 2078 9.289782 AGAGCAACATAGAAAGAAAAATACAGT 57.710 29.630 0.00 0.00 0.00 3.55
1931 2079 9.334693 GAGCAACATAGAAAGAAAAATACAGTG 57.665 33.333 0.00 0.00 0.00 3.66
1932 2080 8.299570 AGCAACATAGAAAGAAAAATACAGTGG 58.700 33.333 0.00 0.00 0.00 4.00
1933 2081 7.542130 GCAACATAGAAAGAAAAATACAGTGGG 59.458 37.037 0.00 0.00 0.00 4.61
1934 2082 8.576442 CAACATAGAAAGAAAAATACAGTGGGT 58.424 33.333 0.00 0.00 0.00 4.51
1935 2083 9.802039 AACATAGAAAGAAAAATACAGTGGGTA 57.198 29.630 0.00 0.00 36.16 3.69
1936 2084 9.449719 ACATAGAAAGAAAAATACAGTGGGTAG 57.550 33.333 0.00 0.00 34.92 3.18
1937 2085 8.893727 CATAGAAAGAAAAATACAGTGGGTAGG 58.106 37.037 0.00 0.00 34.92 3.18
1938 2086 7.086685 AGAAAGAAAAATACAGTGGGTAGGA 57.913 36.000 0.00 0.00 34.92 2.94
1939 2087 6.940867 AGAAAGAAAAATACAGTGGGTAGGAC 59.059 38.462 0.00 0.00 34.92 3.85
1940 2088 6.449830 AAGAAAAATACAGTGGGTAGGACT 57.550 37.500 0.00 0.00 34.92 3.85
1941 2089 6.051179 AGAAAAATACAGTGGGTAGGACTC 57.949 41.667 0.00 0.00 34.92 3.36
1942 2090 4.467198 AAAATACAGTGGGTAGGACTCG 57.533 45.455 0.00 0.00 34.92 4.18
1943 2091 2.822707 ATACAGTGGGTAGGACTCGT 57.177 50.000 0.00 0.00 34.92 4.18
1944 2092 2.592102 TACAGTGGGTAGGACTCGTT 57.408 50.000 0.00 0.00 0.00 3.85
1945 2093 0.966920 ACAGTGGGTAGGACTCGTTG 59.033 55.000 0.00 0.00 0.00 4.10
1946 2094 0.966920 CAGTGGGTAGGACTCGTTGT 59.033 55.000 0.00 0.00 0.00 3.32
1947 2095 0.966920 AGTGGGTAGGACTCGTTGTG 59.033 55.000 0.00 0.00 0.00 3.33
1948 2096 0.677842 GTGGGTAGGACTCGTTGTGT 59.322 55.000 0.00 0.00 0.00 3.72
1949 2097 0.963962 TGGGTAGGACTCGTTGTGTC 59.036 55.000 0.00 0.00 0.00 3.67
1956 2104 2.528041 GACTCGTTGTGTCCTTTCCT 57.472 50.000 0.00 0.00 0.00 3.36
1957 2105 2.135933 GACTCGTTGTGTCCTTTCCTG 58.864 52.381 0.00 0.00 0.00 3.86
1958 2106 1.202651 ACTCGTTGTGTCCTTTCCTGG 60.203 52.381 0.00 0.00 0.00 4.45
1959 2107 0.834612 TCGTTGTGTCCTTTCCTGGT 59.165 50.000 0.00 0.00 0.00 4.00
1960 2108 1.202604 TCGTTGTGTCCTTTCCTGGTC 60.203 52.381 0.00 0.00 0.00 4.02
1961 2109 1.474320 CGTTGTGTCCTTTCCTGGTCA 60.474 52.381 0.00 0.00 0.00 4.02
1962 2110 2.810400 CGTTGTGTCCTTTCCTGGTCAT 60.810 50.000 0.00 0.00 0.00 3.06
1963 2111 2.554032 GTTGTGTCCTTTCCTGGTCATG 59.446 50.000 0.00 0.00 0.00 3.07
1964 2112 1.168714 GTGTCCTTTCCTGGTCATGC 58.831 55.000 0.00 0.00 0.00 4.06
1994 2144 8.103948 ACAGAAATTTCTTAGTCTTGTCATGG 57.896 34.615 18.16 4.64 34.74 3.66
2029 2179 7.497249 CCCTTATCTCCTCTGTTTATTTGACTG 59.503 40.741 0.00 0.00 0.00 3.51
2033 2183 2.159517 CCTCTGTTTATTTGACTGGCGC 60.160 50.000 0.00 0.00 0.00 6.53
2129 2279 4.361971 TCCTCCGCCGAGTCTGGT 62.362 66.667 1.35 0.00 33.93 4.00
2366 2516 4.172512 CCGCAGCAGCCTCCTCAT 62.173 66.667 0.00 0.00 37.52 2.90
2369 2519 2.271173 CAGCAGCCTCCTCATGCA 59.729 61.111 0.00 0.00 42.45 3.96
2370 2520 2.113433 CAGCAGCCTCCTCATGCAC 61.113 63.158 0.00 0.00 42.45 4.57
2371 2521 2.827642 GCAGCCTCCTCATGCACC 60.828 66.667 0.00 0.00 39.75 5.01
2372 2522 2.513204 CAGCCTCCTCATGCACCG 60.513 66.667 0.00 0.00 0.00 4.94
2373 2523 3.790437 AGCCTCCTCATGCACCGG 61.790 66.667 0.00 0.00 0.00 5.28
2384 2534 2.633657 GCACCGGCATTAGCGATG 59.366 61.111 0.00 0.00 43.41 3.84
2411 2561 2.271173 CAGCAGCCTCCTCATGCA 59.729 61.111 0.00 0.00 42.45 3.96
2486 2636 3.655211 CTGTTGGGAGGGCAGGCT 61.655 66.667 0.00 0.00 0.00 4.58
2512 2662 2.509336 CTACGCCAGGTTCCTGCG 60.509 66.667 23.12 23.12 38.50 5.18
2609 2759 3.705934 GAGCTACCCCTTGCAGCCC 62.706 68.421 0.00 0.00 35.88 5.19
2647 2797 2.813908 CAGTACAGAACGCCCGGC 60.814 66.667 0.00 0.00 0.00 6.13
2746 2896 1.154225 CCCAACGCAACATTCGCTC 60.154 57.895 0.00 0.00 0.00 5.03
2785 2939 1.831736 ACGGATACTGACAAGGAAGGG 59.168 52.381 0.00 0.00 0.00 3.95
3052 3211 5.861251 GCAAATCATGTTTGGATACGAAACA 59.139 36.000 16.99 12.60 45.11 2.83
3095 3254 2.046023 CATCGGCCCTGCTGTCAA 60.046 61.111 0.00 0.00 36.18 3.18
3118 3277 2.125350 GGAAGGCAGAGCGGAGTG 60.125 66.667 0.00 0.00 0.00 3.51
3146 3796 5.970612 GTGGCCTTTTTAATTTTGCAACAAG 59.029 36.000 3.32 0.00 0.00 3.16
3542 6257 9.100554 CATGTCCATAATTATGTGCACATTTTT 57.899 29.630 35.45 27.82 37.76 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.084370 CACATTTCCCTCCGCTCGTC 61.084 60.000 0.00 0.00 0.00 4.20
1 2 1.079127 CACATTTCCCTCCGCTCGT 60.079 57.895 0.00 0.00 0.00 4.18
2 3 1.815421 CCACATTTCCCTCCGCTCG 60.815 63.158 0.00 0.00 0.00 5.03
3 4 0.462759 CTCCACATTTCCCTCCGCTC 60.463 60.000 0.00 0.00 0.00 5.03
4 5 1.604378 CTCCACATTTCCCTCCGCT 59.396 57.895 0.00 0.00 0.00 5.52
5 6 1.452108 CCTCCACATTTCCCTCCGC 60.452 63.158 0.00 0.00 0.00 5.54
6 7 1.224592 CCCTCCACATTTCCCTCCG 59.775 63.158 0.00 0.00 0.00 4.63
7 8 1.214992 ACCCCTCCACATTTCCCTCC 61.215 60.000 0.00 0.00 0.00 4.30
8 9 1.490910 CTACCCCTCCACATTTCCCTC 59.509 57.143 0.00 0.00 0.00 4.30
9 10 1.596496 CTACCCCTCCACATTTCCCT 58.404 55.000 0.00 0.00 0.00 4.20
10 11 0.551396 CCTACCCCTCCACATTTCCC 59.449 60.000 0.00 0.00 0.00 3.97
11 12 0.551396 CCCTACCCCTCCACATTTCC 59.449 60.000 0.00 0.00 0.00 3.13
12 13 1.296002 ACCCTACCCCTCCACATTTC 58.704 55.000 0.00 0.00 0.00 2.17
13 14 1.768265 AACCCTACCCCTCCACATTT 58.232 50.000 0.00 0.00 0.00 2.32
14 15 1.639108 GAAACCCTACCCCTCCACATT 59.361 52.381 0.00 0.00 0.00 2.71
15 16 1.296002 GAAACCCTACCCCTCCACAT 58.704 55.000 0.00 0.00 0.00 3.21
16 17 1.196104 CGAAACCCTACCCCTCCACA 61.196 60.000 0.00 0.00 0.00 4.17
17 18 1.600638 CGAAACCCTACCCCTCCAC 59.399 63.158 0.00 0.00 0.00 4.02
18 19 1.614226 CCGAAACCCTACCCCTCCA 60.614 63.158 0.00 0.00 0.00 3.86
19 20 1.614525 ACCGAAACCCTACCCCTCC 60.615 63.158 0.00 0.00 0.00 4.30
20 21 1.600638 CACCGAAACCCTACCCCTC 59.399 63.158 0.00 0.00 0.00 4.30
21 22 2.599757 GCACCGAAACCCTACCCCT 61.600 63.158 0.00 0.00 0.00 4.79
22 23 2.045634 GCACCGAAACCCTACCCC 60.046 66.667 0.00 0.00 0.00 4.95
23 24 2.045634 GGCACCGAAACCCTACCC 60.046 66.667 0.00 0.00 0.00 3.69
24 25 2.435410 CGGCACCGAAACCCTACC 60.435 66.667 2.01 0.00 42.83 3.18
25 26 2.435410 CCGGCACCGAAACCCTAC 60.435 66.667 11.42 0.00 42.83 3.18
26 27 2.924101 ACCGGCACCGAAACCCTA 60.924 61.111 11.42 0.00 42.83 3.53
27 28 4.636435 CACCGGCACCGAAACCCT 62.636 66.667 11.42 0.00 42.83 4.34
39 40 1.308998 CTATTTAAGCCAGCCACCGG 58.691 55.000 0.00 0.00 0.00 5.28
40 41 1.940613 GACTATTTAAGCCAGCCACCG 59.059 52.381 0.00 0.00 0.00 4.94
41 42 2.945668 CTGACTATTTAAGCCAGCCACC 59.054 50.000 0.00 0.00 28.19 4.61
42 43 2.945668 CCTGACTATTTAAGCCAGCCAC 59.054 50.000 0.00 0.00 34.53 5.01
43 44 2.683742 GCCTGACTATTTAAGCCAGCCA 60.684 50.000 0.00 0.00 34.53 4.75
44 45 1.950216 GCCTGACTATTTAAGCCAGCC 59.050 52.381 0.00 0.00 34.53 4.85
45 46 2.924421 AGCCTGACTATTTAAGCCAGC 58.076 47.619 0.00 0.00 34.53 4.85
46 47 4.636249 CCTAGCCTGACTATTTAAGCCAG 58.364 47.826 0.00 0.00 35.57 4.85
47 48 3.181454 GCCTAGCCTGACTATTTAAGCCA 60.181 47.826 0.00 0.00 0.00 4.75
48 49 3.181454 TGCCTAGCCTGACTATTTAAGCC 60.181 47.826 0.00 0.00 0.00 4.35
49 50 3.810386 GTGCCTAGCCTGACTATTTAAGC 59.190 47.826 0.00 0.00 0.00 3.09
50 51 5.283457 AGTGCCTAGCCTGACTATTTAAG 57.717 43.478 0.00 0.00 0.00 1.85
51 52 5.659525 TGTAGTGCCTAGCCTGACTATTTAA 59.340 40.000 0.00 0.00 0.00 1.52
52 53 5.068723 GTGTAGTGCCTAGCCTGACTATTTA 59.931 44.000 0.00 0.00 0.00 1.40
53 54 4.030913 TGTAGTGCCTAGCCTGACTATTT 58.969 43.478 0.00 0.00 0.00 1.40
54 55 3.385111 GTGTAGTGCCTAGCCTGACTATT 59.615 47.826 0.00 0.00 0.00 1.73
55 56 2.959707 GTGTAGTGCCTAGCCTGACTAT 59.040 50.000 0.00 0.00 0.00 2.12
56 57 2.376109 GTGTAGTGCCTAGCCTGACTA 58.624 52.381 0.00 0.00 0.00 2.59
57 58 1.187087 GTGTAGTGCCTAGCCTGACT 58.813 55.000 0.00 0.00 0.00 3.41
58 59 0.179134 CGTGTAGTGCCTAGCCTGAC 60.179 60.000 0.00 0.00 0.00 3.51
59 60 1.320344 CCGTGTAGTGCCTAGCCTGA 61.320 60.000 0.00 0.00 0.00 3.86
60 61 1.141881 CCGTGTAGTGCCTAGCCTG 59.858 63.158 0.00 0.00 0.00 4.85
61 62 2.722201 GCCGTGTAGTGCCTAGCCT 61.722 63.158 0.00 0.00 0.00 4.58
62 63 2.202892 GCCGTGTAGTGCCTAGCC 60.203 66.667 0.00 0.00 0.00 3.93
63 64 2.202892 GGCCGTGTAGTGCCTAGC 60.203 66.667 0.00 0.00 44.46 3.42
98 99 4.492160 TCAGACCGATGTCGCCGC 62.492 66.667 0.00 0.00 46.51 6.53
99 100 2.579787 GTCAGACCGATGTCGCCG 60.580 66.667 0.00 0.00 46.51 6.46
100 101 1.517257 CTGTCAGACCGATGTCGCC 60.517 63.158 0.00 0.00 46.51 5.54
101 102 0.524392 CTCTGTCAGACCGATGTCGC 60.524 60.000 0.00 0.00 46.51 5.19
102 103 0.099613 CCTCTGTCAGACCGATGTCG 59.900 60.000 0.00 0.00 46.51 4.35
103 104 1.403679 CTCCTCTGTCAGACCGATGTC 59.596 57.143 0.00 0.00 42.09 3.06
104 105 1.004862 TCTCCTCTGTCAGACCGATGT 59.995 52.381 0.00 0.00 0.00 3.06
105 106 1.403679 GTCTCCTCTGTCAGACCGATG 59.596 57.143 0.00 0.00 34.09 3.84
106 107 1.757682 GTCTCCTCTGTCAGACCGAT 58.242 55.000 0.00 0.00 34.09 4.18
107 108 0.673956 CGTCTCCTCTGTCAGACCGA 60.674 60.000 0.00 0.00 36.44 4.69
108 109 0.673956 TCGTCTCCTCTGTCAGACCG 60.674 60.000 0.00 0.00 36.44 4.79
109 110 1.091537 CTCGTCTCCTCTGTCAGACC 58.908 60.000 0.00 0.00 36.44 3.85
110 111 0.450184 GCTCGTCTCCTCTGTCAGAC 59.550 60.000 0.00 0.00 36.45 3.51
111 112 0.326595 AGCTCGTCTCCTCTGTCAGA 59.673 55.000 1.78 1.78 0.00 3.27
112 113 1.132262 GAAGCTCGTCTCCTCTGTCAG 59.868 57.143 0.00 0.00 0.00 3.51
113 114 1.169577 GAAGCTCGTCTCCTCTGTCA 58.830 55.000 0.00 0.00 0.00 3.58
114 115 0.098025 CGAAGCTCGTCTCCTCTGTC 59.902 60.000 0.00 0.00 34.72 3.51
115 116 1.309499 CCGAAGCTCGTCTCCTCTGT 61.309 60.000 0.00 0.00 38.40 3.41
116 117 1.027255 TCCGAAGCTCGTCTCCTCTG 61.027 60.000 0.00 0.00 38.40 3.35
117 118 1.027792 GTCCGAAGCTCGTCTCCTCT 61.028 60.000 0.00 0.00 38.40 3.69
118 119 1.430228 GTCCGAAGCTCGTCTCCTC 59.570 63.158 0.00 0.00 38.40 3.71
119 120 2.047443 GGTCCGAAGCTCGTCTCCT 61.047 63.158 0.00 0.00 38.40 3.69
120 121 2.490685 GGTCCGAAGCTCGTCTCC 59.509 66.667 0.00 0.00 38.40 3.71
121 122 2.100603 CGGTCCGAAGCTCGTCTC 59.899 66.667 4.91 0.00 38.40 3.36
122 123 4.117661 GCGGTCCGAAGCTCGTCT 62.118 66.667 17.49 0.00 38.40 4.18
144 145 2.165301 GGGAACTCACGCGGAATCG 61.165 63.158 12.47 0.00 39.81 3.34
145 146 2.165301 CGGGAACTCACGCGGAATC 61.165 63.158 12.47 6.32 41.29 2.52
146 147 2.125673 CGGGAACTCACGCGGAAT 60.126 61.111 12.47 0.00 41.29 3.01
147 148 3.296836 TCGGGAACTCACGCGGAA 61.297 61.111 12.47 0.00 43.59 4.30
148 149 4.047059 GTCGGGAACTCACGCGGA 62.047 66.667 12.47 3.82 43.59 5.54
149 150 3.642778 ATGTCGGGAACTCACGCGG 62.643 63.158 12.47 0.00 43.59 6.46
150 151 2.126071 ATGTCGGGAACTCACGCG 60.126 61.111 3.53 3.53 43.59 6.01
151 152 1.078759 CTGATGTCGGGAACTCACGC 61.079 60.000 0.00 0.00 43.59 5.34
152 153 1.078759 GCTGATGTCGGGAACTCACG 61.079 60.000 0.00 0.00 45.65 4.35
153 154 0.741221 GGCTGATGTCGGGAACTCAC 60.741 60.000 0.00 0.00 0.00 3.51
154 155 1.596934 GGCTGATGTCGGGAACTCA 59.403 57.895 0.00 0.00 0.00 3.41
155 156 1.153349 GGGCTGATGTCGGGAACTC 60.153 63.158 0.00 0.00 0.00 3.01
156 157 2.990479 GGGCTGATGTCGGGAACT 59.010 61.111 0.00 0.00 0.00 3.01
157 158 2.511600 CGGGCTGATGTCGGGAAC 60.512 66.667 0.00 0.00 0.00 3.62
158 159 2.682136 TCGGGCTGATGTCGGGAA 60.682 61.111 0.00 0.00 0.00 3.97
159 160 3.458163 GTCGGGCTGATGTCGGGA 61.458 66.667 0.00 0.00 0.00 5.14
160 161 3.094062 ATGTCGGGCTGATGTCGGG 62.094 63.158 0.00 0.00 0.00 5.14
161 162 1.884464 CATGTCGGGCTGATGTCGG 60.884 63.158 0.00 0.00 0.00 4.79
162 163 1.141665 TCATGTCGGGCTGATGTCG 59.858 57.895 0.00 0.00 0.00 4.35
163 164 1.148157 CGTCATGTCGGGCTGATGTC 61.148 60.000 0.00 0.00 0.00 3.06
164 165 1.153568 CGTCATGTCGGGCTGATGT 60.154 57.895 0.00 0.00 0.00 3.06
165 166 0.873312 CTCGTCATGTCGGGCTGATG 60.873 60.000 12.31 0.00 0.00 3.07
166 167 1.439228 CTCGTCATGTCGGGCTGAT 59.561 57.895 12.31 0.00 0.00 2.90
167 168 2.885113 CTCGTCATGTCGGGCTGA 59.115 61.111 12.31 0.00 0.00 4.26
192 193 4.660938 GGTGGATATGGGGCGCCC 62.661 72.222 38.57 38.57 45.71 6.13
193 194 4.660938 GGGTGGATATGGGGCGCC 62.661 72.222 21.18 21.18 0.00 6.53
194 195 1.562672 ATAGGGTGGATATGGGGCGC 61.563 60.000 0.00 0.00 0.00 6.53
195 196 0.991920 AATAGGGTGGATATGGGGCG 59.008 55.000 0.00 0.00 0.00 6.13
196 197 3.053619 CCTAAATAGGGTGGATATGGGGC 60.054 52.174 0.00 0.00 39.86 5.80
197 198 3.053619 GCCTAAATAGGGTGGATATGGGG 60.054 52.174 8.52 0.00 43.82 4.96
198 199 4.236527 GCCTAAATAGGGTGGATATGGG 57.763 50.000 8.52 0.00 43.82 4.00
208 209 4.164988 CCCTCATATCCAGCCTAAATAGGG 59.835 50.000 8.52 0.00 43.82 3.53
209 210 4.164988 CCCCTCATATCCAGCCTAAATAGG 59.835 50.000 1.92 1.92 46.42 2.57
210 211 4.785376 ACCCCTCATATCCAGCCTAAATAG 59.215 45.833 0.00 0.00 0.00 1.73
211 212 4.536090 CACCCCTCATATCCAGCCTAAATA 59.464 45.833 0.00 0.00 0.00 1.40
212 213 3.331889 CACCCCTCATATCCAGCCTAAAT 59.668 47.826 0.00 0.00 0.00 1.40
213 214 2.711009 CACCCCTCATATCCAGCCTAAA 59.289 50.000 0.00 0.00 0.00 1.85
214 215 2.338809 CACCCCTCATATCCAGCCTAA 58.661 52.381 0.00 0.00 0.00 2.69
215 216 2.030027 CACCCCTCATATCCAGCCTA 57.970 55.000 0.00 0.00 0.00 3.93
216 217 1.422161 GCACCCCTCATATCCAGCCT 61.422 60.000 0.00 0.00 0.00 4.58
217 218 1.073897 GCACCCCTCATATCCAGCC 59.926 63.158 0.00 0.00 0.00 4.85
218 219 1.073897 GGCACCCCTCATATCCAGC 59.926 63.158 0.00 0.00 0.00 4.85
219 220 1.372683 CGGCACCCCTCATATCCAG 59.627 63.158 0.00 0.00 0.00 3.86
220 221 2.146724 CCGGCACCCCTCATATCCA 61.147 63.158 0.00 0.00 0.00 3.41
221 222 2.113243 GACCGGCACCCCTCATATCC 62.113 65.000 0.00 0.00 0.00 2.59
222 223 1.371558 GACCGGCACCCCTCATATC 59.628 63.158 0.00 0.00 0.00 1.63
223 224 1.383943 TGACCGGCACCCCTCATAT 60.384 57.895 0.00 0.00 0.00 1.78
224 225 2.039787 TGACCGGCACCCCTCATA 59.960 61.111 0.00 0.00 0.00 2.15
225 226 3.402681 CTGACCGGCACCCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
239 240 4.697756 CTCAAACGCCCGGGCTGA 62.698 66.667 41.01 34.10 39.32 4.26
261 262 0.958382 TCAAATTTCGACCCAGCCGG 60.958 55.000 0.00 0.00 37.81 6.13
262 263 1.094785 ATCAAATTTCGACCCAGCCG 58.905 50.000 0.00 0.00 0.00 5.52
263 264 2.091541 TCATCAAATTTCGACCCAGCC 58.908 47.619 0.00 0.00 0.00 4.85
264 265 2.159379 GGTCATCAAATTTCGACCCAGC 60.159 50.000 15.56 0.00 41.77 4.85
265 266 2.095853 CGGTCATCAAATTTCGACCCAG 59.904 50.000 18.62 7.80 44.20 4.45
266 267 2.080693 CGGTCATCAAATTTCGACCCA 58.919 47.619 18.62 0.00 44.20 4.51
267 268 1.400494 CCGGTCATCAAATTTCGACCC 59.600 52.381 18.62 8.14 44.20 4.46
268 269 2.081462 ACCGGTCATCAAATTTCGACC 58.919 47.619 0.00 16.13 43.73 4.79
269 270 3.824414 AACCGGTCATCAAATTTCGAC 57.176 42.857 8.04 0.00 0.00 4.20
270 271 4.390603 CACTAACCGGTCATCAAATTTCGA 59.609 41.667 8.04 0.00 0.00 3.71
271 272 4.390603 TCACTAACCGGTCATCAAATTTCG 59.609 41.667 8.04 0.00 0.00 3.46
272 273 5.391629 GGTCACTAACCGGTCATCAAATTTC 60.392 44.000 8.04 0.00 38.58 2.17
273 274 4.457949 GGTCACTAACCGGTCATCAAATTT 59.542 41.667 8.04 0.00 38.58 1.82
274 275 4.007659 GGTCACTAACCGGTCATCAAATT 58.992 43.478 8.04 0.00 38.58 1.82
275 276 3.606687 GGTCACTAACCGGTCATCAAAT 58.393 45.455 8.04 0.00 38.58 2.32
276 277 3.048337 GGTCACTAACCGGTCATCAAA 57.952 47.619 8.04 0.00 38.58 2.69
277 278 2.754946 GGTCACTAACCGGTCATCAA 57.245 50.000 8.04 0.00 38.58 2.57
287 288 2.436115 GGCCGCCTGGTCACTAAC 60.436 66.667 0.71 0.00 40.65 2.34
288 289 3.712907 GGGCCGCCTGGTCACTAA 61.713 66.667 9.86 0.00 43.76 2.24
307 308 4.778143 CCTCCTCAAACGCCCGGG 62.778 72.222 19.09 19.09 0.00 5.73
308 309 4.778143 CCCTCCTCAAACGCCCGG 62.778 72.222 0.00 0.00 0.00 5.73
309 310 3.546714 AACCCTCCTCAAACGCCCG 62.547 63.158 0.00 0.00 0.00 6.13
310 311 1.228459 AAACCCTCCTCAAACGCCC 60.228 57.895 0.00 0.00 0.00 6.13
311 312 1.524008 CCAAACCCTCCTCAAACGCC 61.524 60.000 0.00 0.00 0.00 5.68
312 313 1.956802 CCAAACCCTCCTCAAACGC 59.043 57.895 0.00 0.00 0.00 4.84
313 314 1.852067 CGCCAAACCCTCCTCAAACG 61.852 60.000 0.00 0.00 0.00 3.60
314 315 0.822121 ACGCCAAACCCTCCTCAAAC 60.822 55.000 0.00 0.00 0.00 2.93
315 316 0.821711 CACGCCAAACCCTCCTCAAA 60.822 55.000 0.00 0.00 0.00 2.69
316 317 1.228124 CACGCCAAACCCTCCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
317 318 2.429930 CACGCCAAACCCTCCTCA 59.570 61.111 0.00 0.00 0.00 3.86
318 319 3.056328 GCACGCCAAACCCTCCTC 61.056 66.667 0.00 0.00 0.00 3.71
319 320 4.660938 GGCACGCCAAACCCTCCT 62.661 66.667 2.36 0.00 35.81 3.69
345 346 6.845302 TGTGTTTGATCATGTTAAGAGCATC 58.155 36.000 0.00 0.00 30.75 3.91
346 347 6.822667 TGTGTTTGATCATGTTAAGAGCAT 57.177 33.333 0.00 0.00 30.75 3.79
347 348 6.822667 ATGTGTTTGATCATGTTAAGAGCA 57.177 33.333 0.00 0.00 0.00 4.26
348 349 9.793252 AATAATGTGTTTGATCATGTTAAGAGC 57.207 29.630 0.00 0.00 0.00 4.09
483 487 2.544721 TGCTTCAGGGACAATCTCTCT 58.455 47.619 0.00 0.00 0.00 3.10
484 488 3.340814 TTGCTTCAGGGACAATCTCTC 57.659 47.619 0.00 0.00 0.00 3.20
485 489 3.795688 TTTGCTTCAGGGACAATCTCT 57.204 42.857 0.00 0.00 0.00 3.10
486 490 5.166398 CAAATTTGCTTCAGGGACAATCTC 58.834 41.667 5.01 0.00 0.00 2.75
506 510 2.288825 ACTCGCTTCATCTCGGAACAAA 60.289 45.455 0.00 0.00 0.00 2.83
555 559 2.987413 TATTGTGTCGGCAGCTTTTG 57.013 45.000 0.00 0.00 0.00 2.44
625 629 1.100463 TCTGGCGCATGTGTGTGTTT 61.100 50.000 10.83 0.00 38.13 2.83
725 737 5.218885 GGAACAGTGATCTACATCGATCTG 58.781 45.833 0.00 0.00 40.32 2.90
752 768 5.475909 TCGTGGATATAGATTTAGTTCCGCT 59.524 40.000 0.00 0.00 32.82 5.52
785 801 2.605818 TGCGTGCGTTTAATTAGCTAGG 59.394 45.455 0.00 0.00 0.00 3.02
866 896 4.803572 ATATAGAGGGGGATGGGAAGAA 57.196 45.455 0.00 0.00 0.00 2.52
877 907 5.296283 CGACGGACAACTATATATAGAGGGG 59.704 48.000 23.70 12.71 34.50 4.79
879 909 5.585445 AGCGACGGACAACTATATATAGAGG 59.415 44.000 23.70 16.76 34.50 3.69
1102 1137 2.658593 CGTATTGAGAGGCGGCGG 60.659 66.667 9.78 0.00 0.00 6.13
1110 1145 1.407618 CCCCACATCGTCGTATTGAGA 59.592 52.381 0.00 0.00 0.00 3.27
1112 1147 0.462375 CCCCCACATCGTCGTATTGA 59.538 55.000 0.00 0.00 0.00 2.57
1164 1199 2.835431 ACCTGAGCTAGCGCCGAT 60.835 61.111 16.27 0.00 36.60 4.18
1324 1359 0.611618 TACGTACCGGCAAGGAAGGA 60.612 55.000 0.00 0.00 45.00 3.36
1428 1489 7.524294 TCGAGTCGTTTAACTTGTTTAAAGT 57.476 32.000 13.12 0.00 39.79 2.66
1430 1491 8.129161 TGATCGAGTCGTTTAACTTGTTTAAA 57.871 30.769 13.12 0.00 37.33 1.52
1466 1538 4.785453 GGGGTTGCTGAGCTCCCG 62.785 72.222 23.68 3.31 41.40 5.14
1624 1760 0.821711 TTGTGCCCTGTTGTAGGTGC 60.822 55.000 0.00 0.00 45.80 5.01
1641 1777 2.098770 GCTTATTGCTTCTCCTGCCTTG 59.901 50.000 0.00 0.00 38.95 3.61
1646 1782 4.439700 CCAACATGCTTATTGCTTCTCCTG 60.440 45.833 0.00 0.00 43.37 3.86
1684 1820 2.212652 GGACATATCGAGCACATGCAA 58.787 47.619 6.64 0.00 45.16 4.08
1685 1821 1.138661 TGGACATATCGAGCACATGCA 59.861 47.619 6.64 0.00 45.16 3.96
1686 1822 1.869774 TGGACATATCGAGCACATGC 58.130 50.000 0.00 0.00 42.49 4.06
1762 1903 2.226330 TGGAACAGTGGGAAAACGATG 58.774 47.619 0.00 0.00 0.00 3.84
1829 1977 6.389906 CCGAAATGAATCAGCCTAAGTTTTT 58.610 36.000 0.00 0.00 0.00 1.94
1830 1978 5.622233 GCCGAAATGAATCAGCCTAAGTTTT 60.622 40.000 0.00 0.00 0.00 2.43
1831 1979 4.142381 GCCGAAATGAATCAGCCTAAGTTT 60.142 41.667 0.00 0.00 0.00 2.66
1915 2063 6.940867 AGTCCTACCCACTGTATTTTTCTTTC 59.059 38.462 0.00 0.00 0.00 2.62
1917 2065 6.449830 AGTCCTACCCACTGTATTTTTCTT 57.550 37.500 0.00 0.00 0.00 2.52
1918 2066 5.337330 CGAGTCCTACCCACTGTATTTTTCT 60.337 44.000 0.00 0.00 0.00 2.52
1919 2067 4.868734 CGAGTCCTACCCACTGTATTTTTC 59.131 45.833 0.00 0.00 0.00 2.29
1920 2068 4.285260 ACGAGTCCTACCCACTGTATTTTT 59.715 41.667 0.00 0.00 0.00 1.94
1923 2071 3.097342 ACGAGTCCTACCCACTGTATT 57.903 47.619 0.00 0.00 0.00 1.89
1924 2072 2.758979 CAACGAGTCCTACCCACTGTAT 59.241 50.000 0.00 0.00 0.00 2.29
1925 2073 2.165167 CAACGAGTCCTACCCACTGTA 58.835 52.381 0.00 0.00 0.00 2.74
1926 2074 0.966920 CAACGAGTCCTACCCACTGT 59.033 55.000 0.00 0.00 0.00 3.55
1927 2075 0.966920 ACAACGAGTCCTACCCACTG 59.033 55.000 0.00 0.00 0.00 3.66
1928 2076 0.966920 CACAACGAGTCCTACCCACT 59.033 55.000 0.00 0.00 0.00 4.00
1929 2077 0.677842 ACACAACGAGTCCTACCCAC 59.322 55.000 0.00 0.00 0.00 4.61
1930 2078 0.963962 GACACAACGAGTCCTACCCA 59.036 55.000 0.00 0.00 0.00 4.51
1931 2079 3.808583 GACACAACGAGTCCTACCC 57.191 57.895 0.00 0.00 0.00 3.69
1937 2085 2.135933 CAGGAAAGGACACAACGAGTC 58.864 52.381 0.00 0.00 35.29 3.36
1938 2086 1.202651 CCAGGAAAGGACACAACGAGT 60.203 52.381 0.00 0.00 0.00 4.18
1939 2087 1.202651 ACCAGGAAAGGACACAACGAG 60.203 52.381 0.00 0.00 0.00 4.18
1940 2088 0.834612 ACCAGGAAAGGACACAACGA 59.165 50.000 0.00 0.00 0.00 3.85
1941 2089 1.226746 GACCAGGAAAGGACACAACG 58.773 55.000 0.00 0.00 0.00 4.10
1942 2090 2.341846 TGACCAGGAAAGGACACAAC 57.658 50.000 0.00 0.00 0.00 3.32
1943 2091 2.862541 CATGACCAGGAAAGGACACAA 58.137 47.619 0.00 0.00 36.22 3.33
1944 2092 1.545428 GCATGACCAGGAAAGGACACA 60.545 52.381 0.00 0.00 36.22 3.72
1945 2093 1.168714 GCATGACCAGGAAAGGACAC 58.831 55.000 0.00 0.00 36.22 3.67
1946 2094 0.770499 TGCATGACCAGGAAAGGACA 59.230 50.000 0.00 0.00 37.71 4.02
1947 2095 1.909700 TTGCATGACCAGGAAAGGAC 58.090 50.000 0.00 0.00 0.00 3.85
1948 2096 2.673775 TTTGCATGACCAGGAAAGGA 57.326 45.000 0.00 0.00 0.00 3.36
1949 2097 3.763360 TGTATTTGCATGACCAGGAAAGG 59.237 43.478 0.00 0.00 29.89 3.11
1950 2098 4.701651 TCTGTATTTGCATGACCAGGAAAG 59.298 41.667 0.00 0.00 29.89 2.62
1951 2099 4.661222 TCTGTATTTGCATGACCAGGAAA 58.339 39.130 0.00 0.00 0.00 3.13
1952 2100 4.299586 TCTGTATTTGCATGACCAGGAA 57.700 40.909 0.00 0.00 0.00 3.36
1953 2101 3.998913 TCTGTATTTGCATGACCAGGA 57.001 42.857 0.00 0.00 0.00 3.86
1954 2102 5.587388 ATTTCTGTATTTGCATGACCAGG 57.413 39.130 0.00 0.00 0.00 4.45
1955 2103 7.318141 AGAAATTTCTGTATTTGCATGACCAG 58.682 34.615 19.86 0.00 35.89 4.00
1956 2104 7.230849 AGAAATTTCTGTATTTGCATGACCA 57.769 32.000 19.86 0.00 35.89 4.02
1957 2105 9.294030 CTAAGAAATTTCTGTATTTGCATGACC 57.706 33.333 21.15 0.00 37.65 4.02
1958 2106 9.846248 ACTAAGAAATTTCTGTATTTGCATGAC 57.154 29.630 21.15 0.00 37.65 3.06
1962 2110 9.897744 CAAGACTAAGAAATTTCTGTATTTGCA 57.102 29.630 21.15 0.00 37.65 4.08
1963 2111 9.899226 ACAAGACTAAGAAATTTCTGTATTTGC 57.101 29.630 21.15 7.74 37.65 3.68
1994 2144 5.062528 CAGAGGAGATAAGGGAAAGAATGC 58.937 45.833 0.00 0.00 0.00 3.56
2029 2179 3.925238 CCGTGTAATCTGCGCGCC 61.925 66.667 30.77 12.65 38.37 6.53
2033 2183 2.703409 GCTGCCGTGTAATCTGCG 59.297 61.111 0.00 0.00 0.00 5.18
2350 2500 2.895865 CATGAGGAGGCTGCTGCG 60.896 66.667 15.18 0.00 40.82 5.18
2391 2541 4.172512 ATGAGGAGGCTGCTGCGG 62.173 66.667 15.18 3.55 40.82 5.69
2392 2542 2.895865 CATGAGGAGGCTGCTGCG 60.896 66.667 15.18 0.00 40.82 5.18
2393 2543 3.210528 GCATGAGGAGGCTGCTGC 61.211 66.667 15.18 8.26 38.76 5.25
2394 2544 2.113433 GTGCATGAGGAGGCTGCTG 61.113 63.158 15.18 0.50 36.84 4.41
2395 2545 2.271497 GTGCATGAGGAGGCTGCT 59.729 61.111 8.79 8.79 36.84 4.24
2396 2546 2.827642 GGTGCATGAGGAGGCTGC 60.828 66.667 0.00 0.00 36.45 5.25
2397 2547 2.513204 CGGTGCATGAGGAGGCTG 60.513 66.667 0.00 0.00 0.00 4.85
2398 2548 3.790437 CCGGTGCATGAGGAGGCT 61.790 66.667 0.00 0.00 0.00 4.58
2400 2550 4.100084 TGCCGGTGCATGAGGAGG 62.100 66.667 1.90 0.00 44.23 4.30
2486 2636 1.575419 ACCTGGCGTAGTGGGAATAA 58.425 50.000 0.00 0.00 0.00 1.40
2609 2759 4.504916 CCCTCACCTCTGCGCTCG 62.505 72.222 9.73 0.00 0.00 5.03
2613 2763 4.767255 GGCACCCTCACCTCTGCG 62.767 72.222 0.00 0.00 0.00 5.18
2746 2896 1.205064 CGGCTTCGCTTTGACTGTG 59.795 57.895 0.00 0.00 0.00 3.66
2816 2974 2.279851 TGAACACGCTGACCACGG 60.280 61.111 0.00 0.00 34.00 4.94
3095 3254 2.586792 GCTCTGCCTTCCCGTCAT 59.413 61.111 0.00 0.00 0.00 3.06
3118 3277 3.605922 GCAAAATTAAAAAGGCCACACGC 60.606 43.478 5.01 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.