Multiple sequence alignment - TraesCS5B01G118000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G118000 chr5B 100.000 7734 0 0 732 8465 208519927 208527660 0.000000e+00 14283.0
1 TraesCS5B01G118000 chr5B 100.000 537 0 0 1 537 208519196 208519732 0.000000e+00 992.0
2 TraesCS5B01G118000 chr5B 85.185 432 51 9 15 443 50534041 50534462 1.690000e-116 431.0
3 TraesCS5B01G118000 chr5B 85.023 434 50 10 13 443 51058965 51058544 2.180000e-115 427.0
4 TraesCS5B01G118000 chr5B 91.329 173 14 1 5313 5485 490757577 490757406 1.420000e-57 235.0
5 TraesCS5B01G118000 chr5B 91.617 167 12 1 4098 4262 299602383 299602217 6.610000e-56 230.0
6 TraesCS5B01G118000 chr5D 97.533 5919 102 17 820 6716 204319946 204325842 0.000000e+00 10081.0
7 TraesCS5B01G118000 chr5D 94.299 1263 33 10 6744 7985 204325842 204327086 0.000000e+00 1897.0
8 TraesCS5B01G118000 chr5D 92.936 453 28 4 1 453 204319361 204319809 0.000000e+00 656.0
9 TraesCS5B01G118000 chr5D 92.547 161 10 1 4103 4261 285256710 285256870 6.610000e-56 230.0
10 TraesCS5B01G118000 chr5D 92.248 129 9 1 5525 5652 204324622 204324750 1.880000e-41 182.0
11 TraesCS5B01G118000 chr5D 88.660 97 10 1 5557 5652 204324622 204324718 5.370000e-22 117.0
12 TraesCS5B01G118000 chr5D 94.340 53 3 0 2908 2960 204321978 204322030 1.960000e-11 82.4
13 TraesCS5B01G118000 chr5A 95.437 3638 115 18 4125 7735 239529935 239533548 0.000000e+00 5751.0
14 TraesCS5B01G118000 chr5A 95.995 3346 79 14 797 4126 239526536 239529842 0.000000e+00 5385.0
15 TraesCS5B01G118000 chr5A 93.931 379 21 2 1 379 239523943 239524319 9.530000e-159 571.0
16 TraesCS5B01G118000 chr5A 95.294 170 7 1 366 535 239525264 239525432 1.400000e-67 268.0
17 TraesCS5B01G118000 chr5A 91.617 167 14 0 5315 5481 320214241 320214407 1.840000e-56 231.0
18 TraesCS5B01G118000 chr5A 90.722 97 8 1 5557 5652 239531300 239531396 2.480000e-25 128.0
19 TraesCS5B01G118000 chr1D 89.485 485 43 6 7984 8464 137069110 137069590 2.610000e-169 606.0
20 TraesCS5B01G118000 chr1D 94.268 157 5 3 4106 4259 7349855 7349700 3.950000e-58 237.0
21 TraesCS5B01G118000 chr1D 90.000 90 8 1 7874 7963 14306671 14306583 1.930000e-21 115.0
22 TraesCS5B01G118000 chr6D 88.844 493 45 7 7976 8465 322848648 322848163 1.570000e-166 597.0
23 TraesCS5B01G118000 chr2D 89.099 477 46 5 7981 8453 189277012 189277486 9.470000e-164 588.0
24 TraesCS5B01G118000 chr2D 89.385 179 18 1 5302 5479 134632350 134632172 3.070000e-54 224.0
25 TraesCS5B01G118000 chr2D 83.721 129 19 2 7649 7776 514951390 514951263 4.150000e-23 121.0
26 TraesCS5B01G118000 chr7D 88.571 490 43 9 7982 8464 454842403 454842886 4.400000e-162 582.0
27 TraesCS5B01G118000 chr7D 88.090 487 51 5 7980 8464 45431165 45430684 9.530000e-159 571.0
28 TraesCS5B01G118000 chr7D 84.101 434 56 13 13 441 503843929 503844354 2.840000e-109 407.0
29 TraesCS5B01G118000 chr3D 88.129 497 50 7 7973 8465 609169959 609170450 4.400000e-162 582.0
30 TraesCS5B01G118000 chr3D 87.976 499 43 11 7981 8465 25211798 25212293 2.650000e-159 573.0
31 TraesCS5B01G118000 chr3D 81.595 326 54 6 1 324 403329187 403328866 1.810000e-66 265.0
32 TraesCS5B01G118000 chr3D 89.595 173 14 3 4094 4262 322435280 322435452 5.150000e-52 217.0
33 TraesCS5B01G118000 chr2A 88.589 482 51 4 7981 8459 203089799 203090279 4.400000e-162 582.0
34 TraesCS5B01G118000 chr2A 89.444 180 15 3 4106 4282 79316005 79316183 3.070000e-54 224.0
35 TraesCS5B01G118000 chr2A 86.992 123 14 2 7657 7778 658974368 658974247 4.120000e-28 137.0
36 TraesCS5B01G118000 chr7A 87.327 505 49 10 7968 8465 208803038 208802542 1.600000e-156 564.0
37 TraesCS5B01G118000 chr7A 91.667 168 14 0 5318 5485 689378281 689378114 5.110000e-57 233.0
38 TraesCS5B01G118000 chr7A 92.405 158 9 3 4102 4256 579808370 579808527 1.110000e-53 222.0
39 TraesCS5B01G118000 chr7A 82.270 141 19 5 7641 7778 317755318 317755181 5.370000e-22 117.0
40 TraesCS5B01G118000 chr4A 79.343 731 125 20 4280 4987 500354878 500354151 2.750000e-134 490.0
41 TraesCS5B01G118000 chr4A 90.643 171 14 2 5313 5482 97530159 97529990 8.550000e-55 226.0
42 TraesCS5B01G118000 chr4B 79.048 735 121 24 4280 4987 124023167 124022439 2.770000e-129 473.0
43 TraesCS5B01G118000 chr4D 78.776 735 125 22 4280 4987 87719479 87718749 1.660000e-126 464.0
44 TraesCS5B01G118000 chr6B 85.132 417 48 10 5768 6178 131888209 131888617 1.700000e-111 414.0
45 TraesCS5B01G118000 chr6B 82.536 418 53 9 5766 6181 131889911 131890310 4.860000e-92 350.0
46 TraesCS5B01G118000 chr6B 81.006 179 26 7 7796 7968 497204224 497204400 1.480000e-27 135.0
47 TraesCS5B01G118000 chr3B 81.231 325 49 9 1 321 529724398 529724082 1.410000e-62 252.0
48 TraesCS5B01G118000 chr2B 91.765 170 12 2 5318 5487 258157885 258157718 1.420000e-57 235.0
49 TraesCS5B01G118000 chr1B 92.638 163 12 0 5317 5479 436689152 436688990 1.420000e-57 235.0
50 TraesCS5B01G118000 chr3A 90.588 170 11 4 4100 4265 383691090 383690922 3.980000e-53 220.0
51 TraesCS5B01G118000 chrUn 85.027 187 26 2 13 199 9993886 9994070 1.120000e-43 189.0
52 TraesCS5B01G118000 chr7B 90.909 55 4 1 5 59 532119046 532119099 1.180000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G118000 chr5B 208519196 208527660 8464 False 7637.500000 14283 100.0000 1 8465 2 chr5B.!!$F2 8464
1 TraesCS5B01G118000 chr5D 204319361 204327086 7725 False 2169.233333 10081 93.3360 1 7985 6 chr5D.!!$F2 7984
2 TraesCS5B01G118000 chr5A 239523943 239533548 9605 False 2420.600000 5751 94.2758 1 7735 5 chr5A.!!$F2 7734
3 TraesCS5B01G118000 chr4A 500354151 500354878 727 True 490.000000 490 79.3430 4280 4987 1 chr4A.!!$R2 707
4 TraesCS5B01G118000 chr4B 124022439 124023167 728 True 473.000000 473 79.0480 4280 4987 1 chr4B.!!$R1 707
5 TraesCS5B01G118000 chr4D 87718749 87719479 730 True 464.000000 464 78.7760 4280 4987 1 chr4D.!!$R1 707
6 TraesCS5B01G118000 chr6B 131888209 131890310 2101 False 382.000000 414 83.8340 5766 6181 2 chr6B.!!$F2 415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.881118 CGTTGGCCACTAACTTGCAT 59.119 50.000 3.88 0.00 0.00 3.96 F
1139 3167 1.563410 CTCCCTTCCAGAAGCTTCCAT 59.437 52.381 22.81 2.23 37.11 3.41 F
1332 3366 1.058057 CATCGCATTGCATCGCATCG 61.058 55.000 9.69 0.00 38.76 3.84 F
1681 3719 1.273887 GCTACTATGCAAGTGCGCG 59.726 57.895 0.00 0.00 45.83 6.86 F
2495 4534 2.094545 GCACTGCAGGTAATCCCTTTTG 60.095 50.000 19.93 3.35 42.73 2.44 F
3338 5379 3.030291 TGGTTCCTCTGCACAAACATTT 58.970 40.909 0.00 0.00 0.00 2.32 F
3659 5708 1.512694 GCAATTGCTAGCACACCCC 59.487 57.895 23.21 1.19 38.21 4.95 F
5273 7497 0.610232 GCATTTGAGCTGGACCCAGT 60.610 55.000 16.61 4.67 45.24 4.00 F
5828 8052 0.322816 TGATTGACTGGGCTGAAGGC 60.323 55.000 0.00 0.00 40.90 4.35 F
6046 8271 3.895232 ATTGATCTAACACACGCCTCT 57.105 42.857 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1162 3191 0.319297 GCGTACCTTCTGGACGTTGT 60.319 55.000 0.00 0.00 38.33 3.32 R
2449 4488 2.052779 CCACTCAGCCTGTGTCTCA 58.947 57.895 0.00 0.00 33.92 3.27 R
2707 4746 3.779738 AGCTAGAGAGGAAAAGATGCCTT 59.220 43.478 0.00 0.00 33.84 4.35 R
2918 4957 4.744237 ACATTGGGCTAGCCATTGATAAT 58.256 39.130 34.09 19.31 37.98 1.28 R
3368 5409 6.227522 TCGAAATTGAGTACAATGACCAGAA 58.772 36.000 0.00 0.00 44.67 3.02 R
4733 6945 3.010027 TGCATCCACCTAAAACCATCTCA 59.990 43.478 0.00 0.00 0.00 3.27 R
5276 7500 5.357878 AGAACAGCTTTGATGTCAAAAGTCA 59.642 36.000 9.24 0.00 44.24 3.41 R
6436 8661 1.071605 GCACTTCTACAACAGCCTCG 58.928 55.000 0.00 0.00 0.00 4.63 R
7066 9298 1.606480 CCTCTTGAGTTTGAGCGCAGA 60.606 52.381 11.47 0.00 0.00 4.26 R
7990 10242 0.111045 CGTTGCAACGCACGAACATA 60.111 50.000 35.89 0.00 46.06 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 8.850156 AGCTTGTTCAACTAATTTATGTTCTGT 58.150 29.630 0.00 0.00 0.00 3.41
152 153 0.881118 CGTTGGCCACTAACTTGCAT 59.119 50.000 3.88 0.00 0.00 3.96
331 332 2.565391 TCTTCGATGTAGTCCCTTGCAA 59.435 45.455 0.00 0.00 0.00 4.08
332 333 2.672961 TCGATGTAGTCCCTTGCAAG 57.327 50.000 19.93 19.93 0.00 4.01
400 1357 4.219143 ACGAATGCATGCTCAACATATG 57.781 40.909 20.33 0.00 36.64 1.78
504 1469 3.376347 TTTTTACATCGCAGCGTGC 57.624 47.368 15.93 0.00 40.69 5.34
775 1740 8.565896 TTTTGAGAATTGACATATGTGCTAGT 57.434 30.769 14.43 1.56 0.00 2.57
776 1741 9.665719 TTTTGAGAATTGACATATGTGCTAGTA 57.334 29.630 14.43 0.00 0.00 1.82
777 1742 9.836864 TTTGAGAATTGACATATGTGCTAGTAT 57.163 29.630 14.43 0.00 0.00 2.12
778 1743 9.836864 TTGAGAATTGACATATGTGCTAGTATT 57.163 29.630 14.43 3.63 0.00 1.89
779 1744 9.836864 TGAGAATTGACATATGTGCTAGTATTT 57.163 29.630 14.43 0.00 0.00 1.40
815 2841 8.360390 AGAATCGACATATGTGCTAGTATTTCA 58.640 33.333 14.43 0.00 0.00 2.69
926 2952 1.753848 TTGGGCCATTCCAGCATCG 60.754 57.895 7.26 0.00 38.17 3.84
1139 3167 1.563410 CTCCCTTCCAGAAGCTTCCAT 59.437 52.381 22.81 2.23 37.11 3.41
1253 3287 5.763204 AGAGAATCCGAGCAAACTTTTGTTA 59.237 36.000 3.74 0.00 37.51 2.41
1331 3365 1.334992 GCATCGCATTGCATCGCATC 61.335 55.000 9.69 0.00 42.31 3.91
1332 3366 1.058057 CATCGCATTGCATCGCATCG 61.058 55.000 9.69 0.00 38.76 3.84
1333 3367 2.775359 ATCGCATTGCATCGCATCGC 62.775 55.000 9.69 0.00 38.76 4.58
1334 3368 2.025013 GCATTGCATCGCATCGCA 59.975 55.556 3.15 0.00 38.76 5.10
1335 3369 1.371267 GCATTGCATCGCATCGCAT 60.371 52.632 3.15 0.00 38.76 4.73
1390 3424 6.504398 TCGCCTTGAAGACACATAATACTAG 58.496 40.000 0.00 0.00 0.00 2.57
1614 3652 7.325660 TGCTTATTGATTAGCAGAAGGAAAG 57.674 36.000 0.91 0.00 42.12 2.62
1623 3661 2.015587 GCAGAAGGAAAGAGGAGCATG 58.984 52.381 0.00 0.00 0.00 4.06
1681 3719 1.273887 GCTACTATGCAAGTGCGCG 59.726 57.895 0.00 0.00 45.83 6.86
1689 3727 3.041351 CAAGTGCGCGTACCAGCA 61.041 61.111 23.95 0.00 41.55 4.41
1904 3943 7.545362 AGAATCTGCATTATATACAATCCGC 57.455 36.000 0.00 0.00 0.00 5.54
2495 4534 2.094545 GCACTGCAGGTAATCCCTTTTG 60.095 50.000 19.93 3.35 42.73 2.44
2610 4649 5.497474 GTGGTCACTGGTCCACTTTATATT 58.503 41.667 13.46 0.00 45.94 1.28
2820 4859 7.721399 GGATATCCTGTCACCATATGTTCTTTT 59.279 37.037 14.97 0.00 0.00 2.27
2826 4865 8.143835 CCTGTCACCATATGTTCTTTTCTTTTT 58.856 33.333 1.24 0.00 0.00 1.94
3338 5379 3.030291 TGGTTCCTCTGCACAAACATTT 58.970 40.909 0.00 0.00 0.00 2.32
3368 5409 8.978874 TGGTAGCTATTCATTGTATGTTGAAT 57.021 30.769 0.00 3.89 43.22 2.57
3659 5708 1.512694 GCAATTGCTAGCACACCCC 59.487 57.895 23.21 1.19 38.21 4.95
4033 6082 7.815840 TGACTTTGGTTGTTCATTATTCTGA 57.184 32.000 0.00 0.00 0.00 3.27
4064 6113 6.426328 TGTTTTTGTTTGCATGACTCAAAAGT 59.574 30.769 0.00 0.00 38.55 2.66
4733 6945 2.900546 ACTGACTGCTAGCCTTTACACT 59.099 45.455 13.29 0.00 0.00 3.55
5011 7223 7.334858 TGTAACCATCATTCATGCTGTTACTA 58.665 34.615 17.47 8.81 37.05 1.82
5184 7408 9.538508 TTTTCTGAGTATGATGATACATCTGTG 57.461 33.333 5.09 0.00 37.50 3.66
5273 7497 0.610232 GCATTTGAGCTGGACCCAGT 60.610 55.000 16.61 4.67 45.24 4.00
5274 7498 1.915141 CATTTGAGCTGGACCCAGTT 58.085 50.000 16.61 11.31 45.24 3.16
5275 7499 2.242043 CATTTGAGCTGGACCCAGTTT 58.758 47.619 16.61 6.44 45.24 2.66
5276 7500 2.452600 TTTGAGCTGGACCCAGTTTT 57.547 45.000 16.61 4.14 45.24 2.43
5277 7501 1.691196 TTGAGCTGGACCCAGTTTTG 58.309 50.000 16.61 0.00 45.24 2.44
5278 7502 0.843309 TGAGCTGGACCCAGTTTTGA 59.157 50.000 16.61 0.00 45.24 2.69
5279 7503 1.239347 GAGCTGGACCCAGTTTTGAC 58.761 55.000 16.61 0.17 45.24 3.18
5338 7562 2.599677 ACTCCCTCCGCTCCTAAATAG 58.400 52.381 0.00 0.00 0.00 1.73
5390 7614 3.935203 ACATACGGAGCAAAATGAGTGAG 59.065 43.478 0.00 0.00 0.00 3.51
5392 7616 2.851195 ACGGAGCAAAATGAGTGAGTT 58.149 42.857 0.00 0.00 0.00 3.01
5661 7885 9.112725 TGACAAGTCCAATGTATTGAAGATATG 57.887 33.333 6.18 3.11 40.14 1.78
5828 8052 0.322816 TGATTGACTGGGCTGAAGGC 60.323 55.000 0.00 0.00 40.90 4.35
5900 8125 4.018688 GGAGGTCCCAATGTAACTAAAGGT 60.019 45.833 0.00 0.00 34.14 3.50
5986 8211 5.620206 TCTGTTCACACACCAAATCATACT 58.380 37.500 0.00 0.00 0.00 2.12
5993 8218 6.885918 TCACACACCAAATCATACTTCATCAT 59.114 34.615 0.00 0.00 0.00 2.45
6046 8271 3.895232 ATTGATCTAACACACGCCTCT 57.105 42.857 0.00 0.00 0.00 3.69
6051 8276 6.459670 TGATCTAACACACGCCTCTTATAA 57.540 37.500 0.00 0.00 0.00 0.98
6189 8414 6.504398 TCAACATGGTGAATACGTATCTCTC 58.496 40.000 12.03 3.66 0.00 3.20
6232 8457 5.489792 TGCTCTGGTGAGATAAGTTTCTT 57.510 39.130 0.00 0.00 42.73 2.52
6601 8826 8.742777 GCAATCATACATATTTACCATCCATGT 58.257 33.333 0.00 0.00 34.40 3.21
6722 8947 4.179926 TGTGCAGTTTGCTTTGTTACAA 57.820 36.364 0.00 0.00 45.31 2.41
6727 8952 5.293079 TGCAGTTTGCTTTGTTACAATTTCC 59.707 36.000 0.00 0.00 45.31 3.13
6728 8953 5.277297 GCAGTTTGCTTTGTTACAATTTCCC 60.277 40.000 0.00 0.00 40.96 3.97
6729 8954 5.814705 CAGTTTGCTTTGTTACAATTTCCCA 59.185 36.000 0.00 0.00 0.00 4.37
6730 8955 6.314896 CAGTTTGCTTTGTTACAATTTCCCAA 59.685 34.615 0.00 0.00 0.00 4.12
6731 8956 7.012232 CAGTTTGCTTTGTTACAATTTCCCAAT 59.988 33.333 0.00 0.00 0.00 3.16
6734 8959 8.964476 TTGCTTTGTTACAATTTCCCAATAAA 57.036 26.923 0.00 0.00 0.00 1.40
6735 8960 8.600449 TGCTTTGTTACAATTTCCCAATAAAG 57.400 30.769 0.00 0.00 34.27 1.85
6736 8961 7.172361 TGCTTTGTTACAATTTCCCAATAAAGC 59.828 33.333 15.85 15.85 46.51 3.51
6772 9004 4.023707 AGCATGTGTTTCAGAAGCACTTAC 60.024 41.667 25.29 16.37 34.52 2.34
7131 9363 0.175760 ACGATCTGGCGCAGTTGTAT 59.824 50.000 10.83 0.00 32.61 2.29
7332 9565 7.262772 TGTACACTTACTACCAATGCATCTAC 58.737 38.462 0.00 0.00 0.00 2.59
7401 9634 7.624360 AGATAGCGGTTATCATCTTCTAGAG 57.376 40.000 13.32 0.00 40.60 2.43
7406 9639 3.056465 GGTTATCATCTTCTAGAGCCGGG 60.056 52.174 2.18 0.00 0.00 5.73
7488 9721 6.809196 CCTGTCTGTCTATTCTTGAAGTACAC 59.191 42.308 0.00 0.00 0.00 2.90
7558 9807 6.268825 AGTTCTTATGTTCTCAGCGACTTA 57.731 37.500 0.00 0.00 0.00 2.24
7642 9891 6.479972 ACTCTTTGATCACCATACCGATTA 57.520 37.500 0.00 0.00 0.00 1.75
7644 9893 8.190326 ACTCTTTGATCACCATACCGATTATA 57.810 34.615 0.00 0.00 0.00 0.98
7755 10004 0.542805 GTAATACCGAGTGGGCCCAA 59.457 55.000 30.64 10.83 40.62 4.12
7807 10059 7.748691 TCTCAATCTTGAATGTGATGTTTGA 57.251 32.000 0.00 0.00 36.64 2.69
7822 10074 4.993029 TGTTTGACAACCCCAAAGTAAG 57.007 40.909 0.00 0.00 34.59 2.34
7826 10078 1.611977 GACAACCCCAAAGTAAGCACC 59.388 52.381 0.00 0.00 0.00 5.01
7828 10080 0.857675 AACCCCAAAGTAAGCACCCT 59.142 50.000 0.00 0.00 0.00 4.34
7830 10082 0.112412 CCCCAAAGTAAGCACCCTGT 59.888 55.000 0.00 0.00 0.00 4.00
7911 10163 4.316446 CGACAACGTGATAACGATGTGATC 60.316 45.833 21.89 7.96 46.28 2.92
7926 10178 8.809159 ACGATGTGATCTCTTAGTAATTCATG 57.191 34.615 0.00 0.00 0.00 3.07
7954 10206 8.837099 TTGGGTTTATCCAACATCATTATTCT 57.163 30.769 0.00 0.00 41.44 2.40
7987 10239 9.836864 AATGTGTTCTCATTATTGATACTAGCA 57.163 29.630 0.00 0.00 36.44 3.49
7988 10240 8.648557 TGTGTTCTCATTATTGATACTAGCAC 57.351 34.615 0.00 0.00 0.00 4.40
7989 10241 8.257306 TGTGTTCTCATTATTGATACTAGCACA 58.743 33.333 0.00 0.00 0.00 4.57
7990 10242 9.265901 GTGTTCTCATTATTGATACTAGCACAT 57.734 33.333 0.00 0.00 0.00 3.21
7998 10250 9.929180 ATTATTGATACTAGCACATATGTTCGT 57.071 29.630 5.37 3.74 0.00 3.85
7999 10251 7.643528 ATTGATACTAGCACATATGTTCGTG 57.356 36.000 5.37 2.65 36.18 4.35
8005 10257 1.523501 CACATATGTTCGTGCGTTGC 58.476 50.000 5.37 0.00 0.00 4.17
8006 10258 1.136113 CACATATGTTCGTGCGTTGCA 60.136 47.619 5.37 0.00 35.60 4.08
8007 10259 1.533299 ACATATGTTCGTGCGTTGCAA 59.467 42.857 1.41 0.00 41.47 4.08
8008 10260 1.904412 CATATGTTCGTGCGTTGCAAC 59.096 47.619 19.89 19.89 41.47 4.17
8030 10282 6.861065 ACGGGAGTTAAAATAGTATGCATG 57.139 37.500 10.16 0.00 43.33 4.06
8031 10283 6.354130 ACGGGAGTTAAAATAGTATGCATGT 58.646 36.000 10.16 0.00 43.33 3.21
8032 10284 7.502696 ACGGGAGTTAAAATAGTATGCATGTA 58.497 34.615 10.16 0.86 43.33 2.29
8033 10285 7.988599 ACGGGAGTTAAAATAGTATGCATGTAA 59.011 33.333 10.16 0.00 43.33 2.41
8034 10286 8.832521 CGGGAGTTAAAATAGTATGCATGTAAA 58.167 33.333 10.16 0.00 0.00 2.01
8042 10294 9.448438 AAAATAGTATGCATGTAAAGTCAGTGA 57.552 29.630 10.16 0.00 0.00 3.41
8043 10295 8.654230 AATAGTATGCATGTAAAGTCAGTGAG 57.346 34.615 10.16 0.00 0.00 3.51
8044 10296 6.286240 AGTATGCATGTAAAGTCAGTGAGA 57.714 37.500 10.16 0.00 0.00 3.27
8045 10297 6.701340 AGTATGCATGTAAAGTCAGTGAGAA 58.299 36.000 10.16 0.00 0.00 2.87
8046 10298 7.334090 AGTATGCATGTAAAGTCAGTGAGAAT 58.666 34.615 10.16 0.00 0.00 2.40
8047 10299 7.826252 AGTATGCATGTAAAGTCAGTGAGAATT 59.174 33.333 10.16 0.00 35.79 2.17
8048 10300 9.098355 GTATGCATGTAAAGTCAGTGAGAATTA 57.902 33.333 10.16 0.00 32.53 1.40
8049 10301 8.743085 ATGCATGTAAAGTCAGTGAGAATTAT 57.257 30.769 0.00 0.00 32.53 1.28
8050 10302 9.836864 ATGCATGTAAAGTCAGTGAGAATTATA 57.163 29.630 0.00 0.00 32.53 0.98
8051 10303 9.836864 TGCATGTAAAGTCAGTGAGAATTATAT 57.163 29.630 0.00 0.00 32.53 0.86
8055 10307 9.098355 TGTAAAGTCAGTGAGAATTATATGTGC 57.902 33.333 0.00 0.00 32.53 4.57
8056 10308 9.098355 GTAAAGTCAGTGAGAATTATATGTGCA 57.902 33.333 0.00 0.00 32.53 4.57
8057 10309 8.565896 AAAGTCAGTGAGAATTATATGTGCAA 57.434 30.769 0.00 0.00 32.53 4.08
8058 10310 7.783090 AGTCAGTGAGAATTATATGTGCAAG 57.217 36.000 0.00 0.00 0.00 4.01
8059 10311 6.259608 AGTCAGTGAGAATTATATGTGCAAGC 59.740 38.462 0.00 0.00 0.00 4.01
8060 10312 6.037500 GTCAGTGAGAATTATATGTGCAAGCA 59.962 38.462 0.00 0.00 0.00 3.91
8061 10313 6.598850 TCAGTGAGAATTATATGTGCAAGCAA 59.401 34.615 0.00 0.00 0.00 3.91
8062 10314 7.121020 TCAGTGAGAATTATATGTGCAAGCAAA 59.879 33.333 0.00 0.00 0.00 3.68
8063 10315 7.756272 CAGTGAGAATTATATGTGCAAGCAAAA 59.244 33.333 0.00 0.00 0.00 2.44
8064 10316 7.756722 AGTGAGAATTATATGTGCAAGCAAAAC 59.243 33.333 0.00 0.00 0.00 2.43
8065 10317 7.541783 GTGAGAATTATATGTGCAAGCAAAACA 59.458 33.333 0.00 0.00 0.00 2.83
8066 10318 7.541783 TGAGAATTATATGTGCAAGCAAAACAC 59.458 33.333 0.00 0.00 34.86 3.32
8067 10319 7.605449 AGAATTATATGTGCAAGCAAAACACT 58.395 30.769 0.00 0.00 35.33 3.55
8068 10320 7.543172 AGAATTATATGTGCAAGCAAAACACTG 59.457 33.333 0.00 0.00 35.33 3.66
8069 10321 2.965572 ATGTGCAAGCAAAACACTGT 57.034 40.000 0.00 0.00 35.33 3.55
8070 10322 1.993542 TGTGCAAGCAAAACACTGTG 58.006 45.000 6.19 6.19 35.33 3.66
8071 10323 0.646895 GTGCAAGCAAAACACTGTGC 59.353 50.000 7.90 0.00 41.22 4.57
8072 10324 0.245813 TGCAAGCAAAACACTGTGCA 59.754 45.000 7.90 0.00 43.42 4.57
8073 10325 1.134759 TGCAAGCAAAACACTGTGCAT 60.135 42.857 7.90 0.00 43.42 3.96
8074 10326 2.100418 TGCAAGCAAAACACTGTGCATA 59.900 40.909 7.90 0.00 43.42 3.14
8075 10327 2.472488 GCAAGCAAAACACTGTGCATAC 59.528 45.455 7.90 0.00 43.42 2.39
8076 10328 3.052036 CAAGCAAAACACTGTGCATACC 58.948 45.455 7.90 0.00 43.42 2.73
8077 10329 2.305928 AGCAAAACACTGTGCATACCA 58.694 42.857 7.90 0.00 43.42 3.25
8078 10330 2.692557 AGCAAAACACTGTGCATACCAA 59.307 40.909 7.90 0.00 43.42 3.67
8079 10331 3.131933 AGCAAAACACTGTGCATACCAAA 59.868 39.130 7.90 0.00 43.42 3.28
8080 10332 3.868077 GCAAAACACTGTGCATACCAAAA 59.132 39.130 7.90 0.00 40.58 2.44
8081 10333 4.331168 GCAAAACACTGTGCATACCAAAAA 59.669 37.500 7.90 0.00 40.58 1.94
8104 10356 9.696917 AAAAATGAACATTTAGCTTCTCGATTT 57.303 25.926 12.20 0.00 39.88 2.17
8105 10357 8.902040 AAATGAACATTTAGCTTCTCGATTTC 57.098 30.769 10.48 0.00 39.08 2.17
8106 10358 6.094739 TGAACATTTAGCTTCTCGATTTCG 57.905 37.500 0.00 0.00 41.45 3.46
8107 10359 4.522297 ACATTTAGCTTCTCGATTTCGC 57.478 40.909 0.00 0.00 39.60 4.70
8108 10360 3.309954 ACATTTAGCTTCTCGATTTCGCC 59.690 43.478 0.00 0.00 39.60 5.54
8109 10361 1.556564 TTAGCTTCTCGATTTCGCCG 58.443 50.000 0.00 0.00 39.60 6.46
8110 10362 0.454600 TAGCTTCTCGATTTCGCCGT 59.545 50.000 0.00 0.00 39.60 5.68
8111 10363 1.078759 AGCTTCTCGATTTCGCCGTG 61.079 55.000 0.00 0.00 39.60 4.94
8112 10364 1.352156 GCTTCTCGATTTCGCCGTGT 61.352 55.000 0.00 0.00 39.60 4.49
8113 10365 0.366871 CTTCTCGATTTCGCCGTGTG 59.633 55.000 0.00 0.00 39.60 3.82
8114 10366 0.319211 TTCTCGATTTCGCCGTGTGT 60.319 50.000 0.00 0.00 39.60 3.72
8115 10367 1.006825 TCTCGATTTCGCCGTGTGTG 61.007 55.000 0.00 0.00 39.60 3.82
8116 10368 1.006825 CTCGATTTCGCCGTGTGTGA 61.007 55.000 0.00 0.00 39.60 3.58
8117 10369 0.597898 TCGATTTCGCCGTGTGTGAA 60.598 50.000 0.00 0.00 41.59 3.18
8118 10370 0.179250 CGATTTCGCCGTGTGTGAAG 60.179 55.000 0.00 0.00 43.90 3.02
8119 10371 0.165944 GATTTCGCCGTGTGTGAAGG 59.834 55.000 0.00 0.00 43.90 3.46
8120 10372 0.250124 ATTTCGCCGTGTGTGAAGGA 60.250 50.000 0.00 0.00 43.90 3.36
8121 10373 0.462225 TTTCGCCGTGTGTGAAGGAA 60.462 50.000 0.00 0.00 43.90 3.36
8122 10374 0.250124 TTCGCCGTGTGTGAAGGAAT 60.250 50.000 0.00 0.00 38.52 3.01
8123 10375 0.948623 TCGCCGTGTGTGAAGGAATG 60.949 55.000 0.00 0.00 0.00 2.67
8124 10376 0.948623 CGCCGTGTGTGAAGGAATGA 60.949 55.000 0.00 0.00 0.00 2.57
8125 10377 1.234821 GCCGTGTGTGAAGGAATGAA 58.765 50.000 0.00 0.00 0.00 2.57
8126 10378 1.812571 GCCGTGTGTGAAGGAATGAAT 59.187 47.619 0.00 0.00 0.00 2.57
8127 10379 2.159517 GCCGTGTGTGAAGGAATGAATC 60.160 50.000 0.00 0.00 0.00 2.52
8142 10394 7.538303 GGAATGAATCCGCAATTTTTACATT 57.462 32.000 0.00 0.00 38.79 2.71
8143 10395 7.621102 GGAATGAATCCGCAATTTTTACATTC 58.379 34.615 0.00 0.00 38.79 2.67
8144 10396 7.277539 GGAATGAATCCGCAATTTTTACATTCA 59.722 33.333 2.87 0.00 36.99 2.57
8145 10397 8.721019 AATGAATCCGCAATTTTTACATTCAT 57.279 26.923 0.00 0.00 39.87 2.57
8146 10398 8.721019 ATGAATCCGCAATTTTTACATTCATT 57.279 26.923 0.00 0.00 36.53 2.57
8147 10399 7.961855 TGAATCCGCAATTTTTACATTCATTG 58.038 30.769 0.00 0.00 0.00 2.82
8148 10400 7.816513 TGAATCCGCAATTTTTACATTCATTGA 59.183 29.630 0.00 0.00 0.00 2.57
8149 10401 8.721019 AATCCGCAATTTTTACATTCATTGAT 57.279 26.923 0.00 0.00 0.00 2.57
8150 10402 7.754069 TCCGCAATTTTTACATTCATTGATC 57.246 32.000 0.00 0.00 0.00 2.92
8151 10403 6.471841 TCCGCAATTTTTACATTCATTGATCG 59.528 34.615 0.00 0.00 0.00 3.69
8152 10404 6.471841 CCGCAATTTTTACATTCATTGATCGA 59.528 34.615 0.00 0.00 0.00 3.59
8153 10405 7.305590 CCGCAATTTTTACATTCATTGATCGAG 60.306 37.037 0.00 0.00 0.00 4.04
8154 10406 7.305590 CGCAATTTTTACATTCATTGATCGAGG 60.306 37.037 0.00 0.00 0.00 4.63
8155 10407 7.515684 GCAATTTTTACATTCATTGATCGAGGC 60.516 37.037 0.00 0.00 0.00 4.70
8156 10408 5.499139 TTTTACATTCATTGATCGAGGCC 57.501 39.130 0.00 0.00 0.00 5.19
8157 10409 2.715749 ACATTCATTGATCGAGGCCA 57.284 45.000 5.01 0.00 0.00 5.36
8158 10410 3.219176 ACATTCATTGATCGAGGCCAT 57.781 42.857 5.01 0.00 0.00 4.40
8159 10411 3.559069 ACATTCATTGATCGAGGCCATT 58.441 40.909 5.01 0.00 0.00 3.16
8160 10412 3.956199 ACATTCATTGATCGAGGCCATTT 59.044 39.130 5.01 0.00 0.00 2.32
8161 10413 5.132502 ACATTCATTGATCGAGGCCATTTA 58.867 37.500 5.01 0.00 0.00 1.40
8162 10414 5.593909 ACATTCATTGATCGAGGCCATTTAA 59.406 36.000 5.01 0.00 0.00 1.52
8163 10415 6.096705 ACATTCATTGATCGAGGCCATTTAAA 59.903 34.615 5.01 0.00 0.00 1.52
8164 10416 6.522625 TTCATTGATCGAGGCCATTTAAAA 57.477 33.333 5.01 0.00 0.00 1.52
8165 10417 6.135290 TCATTGATCGAGGCCATTTAAAAG 57.865 37.500 5.01 0.00 0.00 2.27
8166 10418 5.652014 TCATTGATCGAGGCCATTTAAAAGT 59.348 36.000 5.01 0.00 0.00 2.66
8167 10419 5.975693 TTGATCGAGGCCATTTAAAAGTT 57.024 34.783 5.01 0.00 0.00 2.66
8168 10420 5.975693 TGATCGAGGCCATTTAAAAGTTT 57.024 34.783 5.01 0.00 0.00 2.66
8169 10421 6.339587 TGATCGAGGCCATTTAAAAGTTTT 57.660 33.333 5.01 6.06 0.00 2.43
8170 10422 6.155827 TGATCGAGGCCATTTAAAAGTTTTG 58.844 36.000 5.01 0.00 0.00 2.44
8171 10423 5.523438 TCGAGGCCATTTAAAAGTTTTGT 57.477 34.783 5.01 0.00 0.00 2.83
8172 10424 5.908341 TCGAGGCCATTTAAAAGTTTTGTT 58.092 33.333 5.01 0.00 0.00 2.83
8173 10425 7.040473 TCGAGGCCATTTAAAAGTTTTGTTA 57.960 32.000 5.01 0.00 0.00 2.41
8174 10426 6.919115 TCGAGGCCATTTAAAAGTTTTGTTAC 59.081 34.615 5.01 0.00 0.00 2.50
8175 10427 6.129300 CGAGGCCATTTAAAAGTTTTGTTACG 60.129 38.462 5.01 0.00 0.00 3.18
8176 10428 6.575267 AGGCCATTTAAAAGTTTTGTTACGT 58.425 32.000 5.01 0.00 0.00 3.57
8177 10429 6.698329 AGGCCATTTAAAAGTTTTGTTACGTC 59.302 34.615 5.01 0.00 0.00 4.34
8178 10430 6.476053 GGCCATTTAAAAGTTTTGTTACGTCA 59.524 34.615 11.18 0.00 0.00 4.35
8179 10431 7.170151 GGCCATTTAAAAGTTTTGTTACGTCAT 59.830 33.333 11.18 0.00 0.00 3.06
8180 10432 8.211838 GCCATTTAAAAGTTTTGTTACGTCATC 58.788 33.333 11.18 0.00 0.00 2.92
8181 10433 8.414173 CCATTTAAAAGTTTTGTTACGTCATCG 58.586 33.333 11.18 0.00 43.34 3.84
8197 10449 2.381109 TCGTACGCGAGAGAGAAGG 58.619 57.895 15.93 0.00 42.81 3.46
8198 10450 1.297745 CGTACGCGAGAGAGAAGGC 60.298 63.158 15.93 0.00 41.33 4.35
8199 10451 1.064458 GTACGCGAGAGAGAAGGCC 59.936 63.158 15.93 0.00 33.96 5.19
8200 10452 2.119655 TACGCGAGAGAGAAGGCCC 61.120 63.158 15.93 0.00 33.96 5.80
8201 10453 2.831894 TACGCGAGAGAGAAGGCCCA 62.832 60.000 15.93 0.00 33.96 5.36
8202 10454 2.185608 GCGAGAGAGAAGGCCCAC 59.814 66.667 0.00 0.00 0.00 4.61
8203 10455 2.492090 CGAGAGAGAAGGCCCACG 59.508 66.667 0.00 0.00 0.00 4.94
8204 10456 2.046864 CGAGAGAGAAGGCCCACGA 61.047 63.158 0.00 0.00 0.00 4.35
8205 10457 1.813192 GAGAGAGAAGGCCCACGAG 59.187 63.158 0.00 0.00 0.00 4.18
8206 10458 0.968393 GAGAGAGAAGGCCCACGAGT 60.968 60.000 0.00 0.00 0.00 4.18
8207 10459 0.543174 AGAGAGAAGGCCCACGAGTT 60.543 55.000 0.00 0.00 0.00 3.01
8208 10460 1.183549 GAGAGAAGGCCCACGAGTTA 58.816 55.000 0.00 0.00 0.00 2.24
8209 10461 1.757699 GAGAGAAGGCCCACGAGTTAT 59.242 52.381 0.00 0.00 0.00 1.89
8210 10462 2.168728 GAGAGAAGGCCCACGAGTTATT 59.831 50.000 0.00 0.00 0.00 1.40
8211 10463 2.168728 AGAGAAGGCCCACGAGTTATTC 59.831 50.000 0.00 0.00 0.00 1.75
8212 10464 1.906574 AGAAGGCCCACGAGTTATTCA 59.093 47.619 0.00 0.00 0.00 2.57
8213 10465 2.304761 AGAAGGCCCACGAGTTATTCAA 59.695 45.455 0.00 0.00 0.00 2.69
8214 10466 3.054361 AGAAGGCCCACGAGTTATTCAAT 60.054 43.478 0.00 0.00 0.00 2.57
8215 10467 2.919228 AGGCCCACGAGTTATTCAATC 58.081 47.619 0.00 0.00 0.00 2.67
8216 10468 2.505819 AGGCCCACGAGTTATTCAATCT 59.494 45.455 0.00 0.00 0.00 2.40
8217 10469 3.709653 AGGCCCACGAGTTATTCAATCTA 59.290 43.478 0.00 0.00 0.00 1.98
8218 10470 3.808174 GGCCCACGAGTTATTCAATCTAC 59.192 47.826 0.00 0.00 0.00 2.59
8219 10471 4.443034 GGCCCACGAGTTATTCAATCTACT 60.443 45.833 0.00 0.00 0.00 2.57
8220 10472 5.116882 GCCCACGAGTTATTCAATCTACTT 58.883 41.667 0.00 0.00 0.00 2.24
8221 10473 5.585047 GCCCACGAGTTATTCAATCTACTTT 59.415 40.000 0.00 0.00 0.00 2.66
8222 10474 6.093633 GCCCACGAGTTATTCAATCTACTTTT 59.906 38.462 0.00 0.00 0.00 2.27
8223 10475 7.676572 GCCCACGAGTTATTCAATCTACTTTTC 60.677 40.741 0.00 0.00 0.00 2.29
8224 10476 7.201617 CCCACGAGTTATTCAATCTACTTTTCC 60.202 40.741 0.00 0.00 0.00 3.13
8225 10477 7.549488 CCACGAGTTATTCAATCTACTTTTCCT 59.451 37.037 0.00 0.00 0.00 3.36
8226 10478 8.936864 CACGAGTTATTCAATCTACTTTTCCTT 58.063 33.333 0.00 0.00 0.00 3.36
8227 10479 9.503399 ACGAGTTATTCAATCTACTTTTCCTTT 57.497 29.630 0.00 0.00 0.00 3.11
8228 10480 9.974750 CGAGTTATTCAATCTACTTTTCCTTTC 57.025 33.333 0.00 0.00 0.00 2.62
8234 10486 8.940397 TTCAATCTACTTTTCCTTTCAATCCT 57.060 30.769 0.00 0.00 0.00 3.24
8235 10487 8.940397 TCAATCTACTTTTCCTTTCAATCCTT 57.060 30.769 0.00 0.00 0.00 3.36
8236 10488 9.367160 TCAATCTACTTTTCCTTTCAATCCTTT 57.633 29.630 0.00 0.00 0.00 3.11
8237 10489 9.631452 CAATCTACTTTTCCTTTCAATCCTTTC 57.369 33.333 0.00 0.00 0.00 2.62
8238 10490 8.940397 ATCTACTTTTCCTTTCAATCCTTTCA 57.060 30.769 0.00 0.00 0.00 2.69
8239 10491 8.760980 TCTACTTTTCCTTTCAATCCTTTCAA 57.239 30.769 0.00 0.00 0.00 2.69
8240 10492 9.367160 TCTACTTTTCCTTTCAATCCTTTCAAT 57.633 29.630 0.00 0.00 0.00 2.57
8241 10493 9.631452 CTACTTTTCCTTTCAATCCTTTCAATC 57.369 33.333 0.00 0.00 0.00 2.67
8242 10494 7.147976 ACTTTTCCTTTCAATCCTTTCAATCG 58.852 34.615 0.00 0.00 0.00 3.34
8243 10495 6.892658 TTTCCTTTCAATCCTTTCAATCGA 57.107 33.333 0.00 0.00 0.00 3.59
8244 10496 6.500684 TTCCTTTCAATCCTTTCAATCGAG 57.499 37.500 0.00 0.00 0.00 4.04
8245 10497 4.943705 TCCTTTCAATCCTTTCAATCGAGG 59.056 41.667 0.00 0.00 0.00 4.63
8246 10498 4.096984 CCTTTCAATCCTTTCAATCGAGGG 59.903 45.833 0.00 0.00 33.73 4.30
8247 10499 3.281727 TCAATCCTTTCAATCGAGGGG 57.718 47.619 0.00 0.00 33.73 4.79
8248 10500 2.843730 TCAATCCTTTCAATCGAGGGGA 59.156 45.455 0.00 0.00 33.73 4.81
8249 10501 3.459598 TCAATCCTTTCAATCGAGGGGAT 59.540 43.478 0.00 0.00 36.51 3.85
8250 10502 4.079787 TCAATCCTTTCAATCGAGGGGATT 60.080 41.667 0.00 0.00 46.29 3.01
8251 10503 4.526438 ATCCTTTCAATCGAGGGGATTT 57.474 40.909 0.00 0.00 42.77 2.17
8252 10504 4.316025 TCCTTTCAATCGAGGGGATTTT 57.684 40.909 0.00 0.00 42.77 1.82
8253 10505 5.444744 TCCTTTCAATCGAGGGGATTTTA 57.555 39.130 0.00 0.00 42.77 1.52
8254 10506 5.822204 TCCTTTCAATCGAGGGGATTTTAA 58.178 37.500 0.00 0.00 42.77 1.52
8255 10507 5.885912 TCCTTTCAATCGAGGGGATTTTAAG 59.114 40.000 0.00 0.00 42.77 1.85
8256 10508 5.067805 CCTTTCAATCGAGGGGATTTTAAGG 59.932 44.000 0.00 9.87 42.77 2.69
8257 10509 4.855298 TCAATCGAGGGGATTTTAAGGT 57.145 40.909 0.00 0.00 42.77 3.50
8258 10510 5.961398 TCAATCGAGGGGATTTTAAGGTA 57.039 39.130 0.00 0.00 42.77 3.08
8259 10511 6.509523 TCAATCGAGGGGATTTTAAGGTAT 57.490 37.500 0.00 0.00 42.77 2.73
8260 10512 6.296026 TCAATCGAGGGGATTTTAAGGTATG 58.704 40.000 0.00 0.00 42.77 2.39
8261 10513 6.100569 TCAATCGAGGGGATTTTAAGGTATGA 59.899 38.462 0.00 0.00 42.77 2.15
8262 10514 5.961398 TCGAGGGGATTTTAAGGTATGAA 57.039 39.130 0.00 0.00 0.00 2.57
8263 10515 5.925509 TCGAGGGGATTTTAAGGTATGAAG 58.074 41.667 0.00 0.00 0.00 3.02
8264 10516 5.427481 TCGAGGGGATTTTAAGGTATGAAGT 59.573 40.000 0.00 0.00 0.00 3.01
8265 10517 6.069847 TCGAGGGGATTTTAAGGTATGAAGTT 60.070 38.462 0.00 0.00 0.00 2.66
8266 10518 6.602009 CGAGGGGATTTTAAGGTATGAAGTTT 59.398 38.462 0.00 0.00 0.00 2.66
8267 10519 7.201705 CGAGGGGATTTTAAGGTATGAAGTTTC 60.202 40.741 0.00 0.00 0.00 2.78
8268 10520 7.709601 AGGGGATTTTAAGGTATGAAGTTTCT 58.290 34.615 0.00 0.00 0.00 2.52
8269 10521 7.615757 AGGGGATTTTAAGGTATGAAGTTTCTG 59.384 37.037 0.00 0.00 0.00 3.02
8270 10522 7.614192 GGGGATTTTAAGGTATGAAGTTTCTGA 59.386 37.037 0.00 0.00 0.00 3.27
8271 10523 9.020731 GGGATTTTAAGGTATGAAGTTTCTGAA 57.979 33.333 0.00 0.00 0.00 3.02
8291 10543 9.958180 TTCTGAATATTCTAGGAAACATGAACA 57.042 29.630 16.24 0.00 0.00 3.18
8292 10544 9.958180 TCTGAATATTCTAGGAAACATGAACAA 57.042 29.630 16.24 0.00 0.00 2.83
8349 10601 9.575783 TTATGTACACTTTTGAAAAACAGGAAC 57.424 29.630 0.00 0.00 0.00 3.62
8350 10602 6.982852 TGTACACTTTTGAAAAACAGGAACA 58.017 32.000 0.00 0.00 0.00 3.18
8351 10603 7.434492 TGTACACTTTTGAAAAACAGGAACAA 58.566 30.769 0.00 0.00 0.00 2.83
8352 10604 7.926555 TGTACACTTTTGAAAAACAGGAACAAA 59.073 29.630 0.00 0.00 0.00 2.83
8353 10605 7.793927 ACACTTTTGAAAAACAGGAACAAAA 57.206 28.000 0.00 0.00 37.85 2.44
8354 10606 8.389779 ACACTTTTGAAAAACAGGAACAAAAT 57.610 26.923 0.00 0.00 38.88 1.82
8355 10607 9.495572 ACACTTTTGAAAAACAGGAACAAAATA 57.504 25.926 0.00 0.00 38.88 1.40
8362 10614 9.323985 TGAAAAACAGGAACAAAATATGAAAGG 57.676 29.630 0.00 0.00 0.00 3.11
8363 10615 8.675705 AAAAACAGGAACAAAATATGAAAGGG 57.324 30.769 0.00 0.00 0.00 3.95
8364 10616 7.610580 AAACAGGAACAAAATATGAAAGGGA 57.389 32.000 0.00 0.00 0.00 4.20
8365 10617 7.797121 AACAGGAACAAAATATGAAAGGGAT 57.203 32.000 0.00 0.00 0.00 3.85
8366 10618 7.797121 ACAGGAACAAAATATGAAAGGGATT 57.203 32.000 0.00 0.00 0.00 3.01
8367 10619 8.893563 ACAGGAACAAAATATGAAAGGGATTA 57.106 30.769 0.00 0.00 0.00 1.75
8368 10620 9.492730 ACAGGAACAAAATATGAAAGGGATTAT 57.507 29.630 0.00 0.00 0.00 1.28
8369 10621 9.971922 CAGGAACAAAATATGAAAGGGATTATC 57.028 33.333 0.00 0.00 0.00 1.75
8370 10622 9.942526 AGGAACAAAATATGAAAGGGATTATCT 57.057 29.630 0.00 0.00 0.00 1.98
8402 10654 7.820044 TTCACAAACATTTTCTGTAAACACC 57.180 32.000 0.00 0.00 36.98 4.16
8403 10655 6.925211 TCACAAACATTTTCTGTAAACACCA 58.075 32.000 0.00 0.00 36.98 4.17
8404 10656 7.378966 TCACAAACATTTTCTGTAAACACCAA 58.621 30.769 0.00 0.00 36.98 3.67
8405 10657 7.329717 TCACAAACATTTTCTGTAAACACCAAC 59.670 33.333 0.00 0.00 36.98 3.77
8406 10658 7.330700 CACAAACATTTTCTGTAAACACCAACT 59.669 33.333 0.00 0.00 36.98 3.16
8407 10659 7.875554 ACAAACATTTTCTGTAAACACCAACTT 59.124 29.630 0.00 0.00 36.98 2.66
8408 10660 8.716909 CAAACATTTTCTGTAAACACCAACTTT 58.283 29.630 0.00 0.00 36.98 2.66
8409 10661 8.840833 AACATTTTCTGTAAACACCAACTTTT 57.159 26.923 0.00 0.00 36.98 2.27
8410 10662 8.840833 ACATTTTCTGTAAACACCAACTTTTT 57.159 26.923 0.00 0.00 35.91 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 0.887933 GGCGATGGAAAAGAAGGCAA 59.112 50.000 0.00 0.00 0.00 4.52
115 116 1.809869 GGGCGATGGAAAAGAAGGC 59.190 57.895 0.00 0.00 0.00 4.35
145 146 6.151648 ACATGCTCATTAGTTAACATGCAAGT 59.848 34.615 8.61 8.48 38.72 3.16
177 178 1.497161 AGAGGCGCTAGGGTACAATT 58.503 50.000 7.64 0.00 0.00 2.32
244 245 6.859112 AATAATCTCACGGATGGTAGCTAT 57.141 37.500 0.00 0.00 34.45 2.97
291 292 7.592938 TCGAAGAGCATGACAATTACATTTTT 58.407 30.769 0.00 0.00 0.00 1.94
785 1750 6.573434 ACTAGCACATATGTCGATTCTCAAA 58.427 36.000 5.07 0.00 0.00 2.69
786 1751 6.149129 ACTAGCACATATGTCGATTCTCAA 57.851 37.500 5.07 0.00 0.00 3.02
787 1752 5.774498 ACTAGCACATATGTCGATTCTCA 57.226 39.130 5.07 0.00 0.00 3.27
788 1753 8.749841 AAATACTAGCACATATGTCGATTCTC 57.250 34.615 5.07 0.00 0.00 2.87
791 1756 8.887036 TTGAAATACTAGCACATATGTCGATT 57.113 30.769 5.07 0.00 0.00 3.34
792 1757 8.887036 TTTGAAATACTAGCACATATGTCGAT 57.113 30.769 5.07 3.48 0.00 3.59
793 1758 8.194769 TCTTTGAAATACTAGCACATATGTCGA 58.805 33.333 5.07 0.00 0.00 4.20
794 1759 8.352752 TCTTTGAAATACTAGCACATATGTCG 57.647 34.615 5.07 3.26 0.00 4.35
926 2952 3.069778 GGCCCCATCGGTCTATCC 58.930 66.667 0.00 0.00 31.28 2.59
1090 3118 3.681835 GTGACGTCAGGCGGAGGT 61.682 66.667 20.73 12.62 46.68 3.85
1161 3190 1.415374 CGTACCTTCTGGACGTTGTG 58.585 55.000 0.00 0.00 34.53 3.33
1162 3191 0.319297 GCGTACCTTCTGGACGTTGT 60.319 55.000 0.00 0.00 38.33 3.32
1164 3193 0.319297 GTGCGTACCTTCTGGACGTT 60.319 55.000 0.00 0.00 38.33 3.99
1165 3194 1.288127 GTGCGTACCTTCTGGACGT 59.712 57.895 0.00 0.00 38.33 4.34
1167 3196 1.079336 GGGTGCGTACCTTCTGGAC 60.079 63.158 22.50 0.00 46.66 4.02
1253 3287 3.751698 GGCACTGAAACCTACGAAATCTT 59.248 43.478 0.00 0.00 0.00 2.40
1331 3365 1.853510 TGTATACGGCGTAACAATGCG 59.146 47.619 24.81 0.00 37.74 4.73
1332 3366 2.348218 GCTGTATACGGCGTAACAATGC 60.348 50.000 24.81 21.35 38.61 3.56
1333 3367 3.499072 GCTGTATACGGCGTAACAATG 57.501 47.619 24.81 16.86 38.61 2.82
1596 3634 5.738909 CTCCTCTTTCCTTCTGCTAATCAA 58.261 41.667 0.00 0.00 0.00 2.57
1681 3719 5.390991 GCATGTTCTCTAAAAGTGCTGGTAC 60.391 44.000 0.00 0.00 0.00 3.34
1904 3943 8.472683 TGTAAACAAAAACTGAAAATCCAGTG 57.527 30.769 0.00 0.00 45.82 3.66
2449 4488 2.052779 CCACTCAGCCTGTGTCTCA 58.947 57.895 0.00 0.00 33.92 3.27
2495 4534 7.088589 TCTATCTATTGCTTGCAGGAAAAAC 57.911 36.000 0.00 0.00 0.00 2.43
2707 4746 3.779738 AGCTAGAGAGGAAAAGATGCCTT 59.220 43.478 0.00 0.00 33.84 4.35
2820 4859 8.786898 CCTCACTTTACATGAGAATGAAAAAGA 58.213 33.333 17.20 4.33 45.46 2.52
2826 4865 5.624509 CGGTCCTCACTTTACATGAGAATGA 60.625 44.000 0.00 0.00 45.46 2.57
2918 4957 4.744237 ACATTGGGCTAGCCATTGATAAT 58.256 39.130 34.09 19.31 37.98 1.28
3368 5409 6.227522 TCGAAATTGAGTACAATGACCAGAA 58.772 36.000 0.00 0.00 44.67 3.02
3659 5708 8.971321 GTTAATTACATGCAGCAATAATCTTGG 58.029 33.333 13.20 0.00 0.00 3.61
4033 6082 9.107177 TGAGTCATGCAAACAAAAACATATTTT 57.893 25.926 0.00 0.00 39.81 1.82
4733 6945 3.010027 TGCATCCACCTAAAACCATCTCA 59.990 43.478 0.00 0.00 0.00 3.27
5011 7223 6.511017 AACTAGGGTAGTTGGAAAGTTTCT 57.489 37.500 15.05 0.00 46.58 2.52
5273 7497 6.397272 ACAGCTTTGATGTCAAAAGTCAAAA 58.603 32.000 9.24 0.00 44.24 2.44
5274 7498 5.964758 ACAGCTTTGATGTCAAAAGTCAAA 58.035 33.333 9.24 0.00 44.24 2.69
5275 7499 5.581126 ACAGCTTTGATGTCAAAAGTCAA 57.419 34.783 9.24 0.00 44.24 3.18
5276 7500 5.357878 AGAACAGCTTTGATGTCAAAAGTCA 59.642 36.000 9.24 0.00 44.24 3.41
5277 7501 5.825507 AGAACAGCTTTGATGTCAAAAGTC 58.174 37.500 9.24 2.89 44.24 3.01
5278 7502 5.841957 AGAACAGCTTTGATGTCAAAAGT 57.158 34.783 9.24 6.03 44.24 2.66
5279 7503 5.689068 GGAAGAACAGCTTTGATGTCAAAAG 59.311 40.000 9.24 5.51 44.24 2.27
5593 7817 6.211184 ACATTGGCCTTGTCAGATATCAAAAA 59.789 34.615 3.32 0.00 0.00 1.94
5828 8052 4.269363 GGTGAATCCGTTGTTAAGTATCCG 59.731 45.833 0.00 0.00 0.00 4.18
6051 8276 5.249393 ACCTCTTTCATCATCCTACACAAGT 59.751 40.000 0.00 0.00 0.00 3.16
6436 8661 1.071605 GCACTTCTACAACAGCCTCG 58.928 55.000 0.00 0.00 0.00 4.63
6635 8860 9.847706 GTTTCTCTTCTTTTCTTTCAAAGACTT 57.152 29.630 0.00 0.00 41.52 3.01
6722 8947 7.309377 CGATGATGTATGGCTTTATTGGGAAAT 60.309 37.037 0.00 0.00 0.00 2.17
6727 8952 5.391310 GCTCGATGATGTATGGCTTTATTGG 60.391 44.000 0.00 0.00 0.00 3.16
6728 8953 5.179929 TGCTCGATGATGTATGGCTTTATTG 59.820 40.000 0.00 0.00 0.00 1.90
6729 8954 5.308014 TGCTCGATGATGTATGGCTTTATT 58.692 37.500 0.00 0.00 0.00 1.40
6730 8955 4.898320 TGCTCGATGATGTATGGCTTTAT 58.102 39.130 0.00 0.00 0.00 1.40
6731 8956 4.335400 TGCTCGATGATGTATGGCTTTA 57.665 40.909 0.00 0.00 0.00 1.85
6734 8959 2.038164 ACATGCTCGATGATGTATGGCT 59.962 45.455 7.49 0.00 35.80 4.75
6735 8960 2.159037 CACATGCTCGATGATGTATGGC 59.841 50.000 8.65 0.00 35.80 4.40
6736 8961 3.396560 ACACATGCTCGATGATGTATGG 58.603 45.455 8.65 1.75 35.80 2.74
6934 9166 4.246458 GGATGTCAGTACTGGAAACTGTC 58.754 47.826 22.48 14.12 43.88 3.51
7066 9298 1.606480 CCTCTTGAGTTTGAGCGCAGA 60.606 52.381 11.47 0.00 0.00 4.26
7131 9363 2.235650 CAGAGAAGAGAACCATCAGGCA 59.764 50.000 0.00 0.00 39.06 4.75
7332 9565 6.707711 CAATCAAAATTCGGTGCAATTATGG 58.292 36.000 0.00 0.00 0.00 2.74
7384 9617 3.056465 CCCGGCTCTAGAAGATGATAACC 60.056 52.174 0.00 0.00 0.00 2.85
7401 9634 4.039852 AGAAGAGATAGAAAAGATCCCGGC 59.960 45.833 0.00 0.00 0.00 6.13
7558 9807 3.402628 AATGTGTAGTTGACGCCTCTT 57.597 42.857 0.00 0.00 37.81 2.85
7632 9881 8.882415 AACCAGTAACAAGTATAATCGGTATG 57.118 34.615 0.00 0.00 0.00 2.39
7636 9885 8.036273 ACAAAACCAGTAACAAGTATAATCGG 57.964 34.615 0.00 0.00 0.00 4.18
7637 9886 9.537848 GAACAAAACCAGTAACAAGTATAATCG 57.462 33.333 0.00 0.00 0.00 3.34
7642 9891 8.747538 AAGAGAACAAAACCAGTAACAAGTAT 57.252 30.769 0.00 0.00 0.00 2.12
7644 9893 7.462571 AAAGAGAACAAAACCAGTAACAAGT 57.537 32.000 0.00 0.00 0.00 3.16
7807 10059 1.699730 GGTGCTTACTTTGGGGTTGT 58.300 50.000 0.00 0.00 0.00 3.32
7877 10129 7.253717 CGTTATCACGTTGTCGGTATTTTCATA 60.254 37.037 0.00 0.00 41.84 2.15
7911 10163 8.567285 AAACCCAACTCATGAATTACTAAGAG 57.433 34.615 0.00 0.00 0.00 2.85
7986 10238 1.136113 TGCAACGCACGAACATATGTG 60.136 47.619 9.63 0.00 39.10 3.21
7987 10239 1.152510 TGCAACGCACGAACATATGT 58.847 45.000 1.41 1.41 31.71 2.29
7988 10240 1.904412 GTTGCAACGCACGAACATATG 59.096 47.619 14.90 0.00 38.71 1.78
7989 10241 1.463363 CGTTGCAACGCACGAACATAT 60.463 47.619 35.89 0.00 46.06 1.78
7990 10242 0.111045 CGTTGCAACGCACGAACATA 60.111 50.000 35.89 0.00 46.06 2.29
7991 10243 1.368731 CGTTGCAACGCACGAACAT 60.369 52.632 35.89 0.00 46.06 2.71
7992 10244 2.022069 CGTTGCAACGCACGAACA 59.978 55.556 35.89 0.00 46.06 3.18
8001 10253 5.366829 ACTATTTTAACTCCCGTTGCAAC 57.633 39.130 19.89 19.89 34.59 4.17
8002 10254 6.403855 GCATACTATTTTAACTCCCGTTGCAA 60.404 38.462 0.00 0.00 34.59 4.08
8003 10255 5.065474 GCATACTATTTTAACTCCCGTTGCA 59.935 40.000 0.00 0.00 34.59 4.08
8004 10256 5.065474 TGCATACTATTTTAACTCCCGTTGC 59.935 40.000 0.00 0.00 34.59 4.17
8005 10257 6.671614 TGCATACTATTTTAACTCCCGTTG 57.328 37.500 0.00 0.00 34.59 4.10
8006 10258 6.826741 ACATGCATACTATTTTAACTCCCGTT 59.173 34.615 0.00 0.00 37.15 4.44
8007 10259 6.354130 ACATGCATACTATTTTAACTCCCGT 58.646 36.000 0.00 0.00 0.00 5.28
8008 10260 6.861065 ACATGCATACTATTTTAACTCCCG 57.139 37.500 0.00 0.00 0.00 5.14
8016 10268 9.448438 TCACTGACTTTACATGCATACTATTTT 57.552 29.630 0.00 0.00 0.00 1.82
8017 10269 9.102757 CTCACTGACTTTACATGCATACTATTT 57.897 33.333 0.00 0.00 0.00 1.40
8018 10270 8.478066 TCTCACTGACTTTACATGCATACTATT 58.522 33.333 0.00 0.00 0.00 1.73
8019 10271 8.011844 TCTCACTGACTTTACATGCATACTAT 57.988 34.615 0.00 0.00 0.00 2.12
8020 10272 7.404671 TCTCACTGACTTTACATGCATACTA 57.595 36.000 0.00 0.00 0.00 1.82
8021 10273 6.286240 TCTCACTGACTTTACATGCATACT 57.714 37.500 0.00 0.00 0.00 2.12
8022 10274 6.968131 TTCTCACTGACTTTACATGCATAC 57.032 37.500 0.00 0.00 0.00 2.39
8023 10275 9.836864 ATAATTCTCACTGACTTTACATGCATA 57.163 29.630 0.00 0.00 0.00 3.14
8024 10276 8.743085 ATAATTCTCACTGACTTTACATGCAT 57.257 30.769 0.00 0.00 0.00 3.96
8025 10277 9.836864 ATATAATTCTCACTGACTTTACATGCA 57.163 29.630 0.00 0.00 0.00 3.96
8029 10281 9.098355 GCACATATAATTCTCACTGACTTTACA 57.902 33.333 0.00 0.00 0.00 2.41
8030 10282 9.098355 TGCACATATAATTCTCACTGACTTTAC 57.902 33.333 0.00 0.00 0.00 2.01
8031 10283 9.665719 TTGCACATATAATTCTCACTGACTTTA 57.334 29.630 0.00 0.00 0.00 1.85
8032 10284 8.565896 TTGCACATATAATTCTCACTGACTTT 57.434 30.769 0.00 0.00 0.00 2.66
8033 10285 7.201679 GCTTGCACATATAATTCTCACTGACTT 60.202 37.037 0.00 0.00 0.00 3.01
8034 10286 6.259608 GCTTGCACATATAATTCTCACTGACT 59.740 38.462 0.00 0.00 0.00 3.41
8035 10287 6.037500 TGCTTGCACATATAATTCTCACTGAC 59.962 38.462 0.00 0.00 0.00 3.51
8036 10288 6.114767 TGCTTGCACATATAATTCTCACTGA 58.885 36.000 0.00 0.00 0.00 3.41
8037 10289 6.367686 TGCTTGCACATATAATTCTCACTG 57.632 37.500 0.00 0.00 0.00 3.66
8038 10290 7.395190 TTTGCTTGCACATATAATTCTCACT 57.605 32.000 0.00 0.00 0.00 3.41
8039 10291 7.541783 TGTTTTGCTTGCACATATAATTCTCAC 59.458 33.333 0.00 0.00 0.00 3.51
8040 10292 7.541783 GTGTTTTGCTTGCACATATAATTCTCA 59.458 33.333 0.00 0.00 33.70 3.27
8041 10293 7.756722 AGTGTTTTGCTTGCACATATAATTCTC 59.243 33.333 0.00 0.00 35.75 2.87
8042 10294 7.543172 CAGTGTTTTGCTTGCACATATAATTCT 59.457 33.333 0.00 0.00 35.75 2.40
8043 10295 7.329226 ACAGTGTTTTGCTTGCACATATAATTC 59.671 33.333 0.00 0.00 35.75 2.17
8044 10296 7.116662 CACAGTGTTTTGCTTGCACATATAATT 59.883 33.333 0.00 0.00 35.75 1.40
8045 10297 6.587226 CACAGTGTTTTGCTTGCACATATAAT 59.413 34.615 0.00 0.00 35.75 1.28
8046 10298 5.919707 CACAGTGTTTTGCTTGCACATATAA 59.080 36.000 0.00 0.00 35.75 0.98
8047 10299 5.459768 CACAGTGTTTTGCTTGCACATATA 58.540 37.500 0.00 0.00 35.75 0.86
8048 10300 4.300803 CACAGTGTTTTGCTTGCACATAT 58.699 39.130 0.00 0.00 35.75 1.78
8049 10301 3.704512 CACAGTGTTTTGCTTGCACATA 58.295 40.909 0.00 0.00 35.75 2.29
8050 10302 2.542597 CACAGTGTTTTGCTTGCACAT 58.457 42.857 0.00 0.00 35.75 3.21
8051 10303 1.993542 CACAGTGTTTTGCTTGCACA 58.006 45.000 0.00 0.00 35.75 4.57
8052 10304 0.646895 GCACAGTGTTTTGCTTGCAC 59.353 50.000 1.61 0.00 35.74 4.57
8053 10305 0.245813 TGCACAGTGTTTTGCTTGCA 59.754 45.000 1.61 0.00 39.62 4.08
8054 10306 1.574134 ATGCACAGTGTTTTGCTTGC 58.426 45.000 1.61 0.00 39.62 4.01
8055 10307 3.052036 GGTATGCACAGTGTTTTGCTTG 58.948 45.455 1.61 0.00 39.62 4.01
8056 10308 2.692557 TGGTATGCACAGTGTTTTGCTT 59.307 40.909 1.61 0.00 39.62 3.91
8057 10309 2.305928 TGGTATGCACAGTGTTTTGCT 58.694 42.857 1.61 0.00 39.62 3.91
8058 10310 2.791383 TGGTATGCACAGTGTTTTGC 57.209 45.000 1.61 0.00 39.33 3.68
8078 10330 9.696917 AAATCGAGAAGCTAAATGTTCATTTTT 57.303 25.926 14.54 5.11 0.00 1.94
8079 10331 9.346725 GAAATCGAGAAGCTAAATGTTCATTTT 57.653 29.630 14.54 0.00 0.00 1.82
8080 10332 7.693951 CGAAATCGAGAAGCTAAATGTTCATTT 59.306 33.333 13.93 13.93 43.02 2.32
8081 10333 7.182761 CGAAATCGAGAAGCTAAATGTTCATT 58.817 34.615 0.00 0.00 43.02 2.57
8082 10334 6.709643 CGAAATCGAGAAGCTAAATGTTCAT 58.290 36.000 0.00 0.00 43.02 2.57
8083 10335 5.445939 GCGAAATCGAGAAGCTAAATGTTCA 60.446 40.000 7.06 0.00 43.02 3.18
8084 10336 4.958563 GCGAAATCGAGAAGCTAAATGTTC 59.041 41.667 7.06 0.00 43.02 3.18
8085 10337 4.201822 GGCGAAATCGAGAAGCTAAATGTT 60.202 41.667 7.06 0.00 43.02 2.71
8086 10338 3.309954 GGCGAAATCGAGAAGCTAAATGT 59.690 43.478 7.06 0.00 43.02 2.71
8087 10339 3.602491 CGGCGAAATCGAGAAGCTAAATG 60.602 47.826 0.00 0.00 43.02 2.32
8088 10340 2.540101 CGGCGAAATCGAGAAGCTAAAT 59.460 45.455 0.00 0.00 43.02 1.40
8089 10341 1.924524 CGGCGAAATCGAGAAGCTAAA 59.075 47.619 0.00 0.00 43.02 1.85
8090 10342 1.135199 ACGGCGAAATCGAGAAGCTAA 60.135 47.619 16.62 0.00 43.02 3.09
8091 10343 0.454600 ACGGCGAAATCGAGAAGCTA 59.545 50.000 16.62 0.00 43.02 3.32
8092 10344 1.078759 CACGGCGAAATCGAGAAGCT 61.079 55.000 16.62 0.00 43.02 3.74
8093 10345 1.345176 CACGGCGAAATCGAGAAGC 59.655 57.895 16.62 0.00 43.02 3.86
8094 10346 0.366871 CACACGGCGAAATCGAGAAG 59.633 55.000 16.62 1.79 43.02 2.85
8095 10347 0.319211 ACACACGGCGAAATCGAGAA 60.319 50.000 16.62 0.00 43.02 2.87
8096 10348 1.006825 CACACACGGCGAAATCGAGA 61.007 55.000 16.62 0.00 43.02 4.04
8097 10349 1.006825 TCACACACGGCGAAATCGAG 61.007 55.000 16.62 2.25 43.02 4.04
8098 10350 0.597898 TTCACACACGGCGAAATCGA 60.598 50.000 16.62 0.85 43.02 3.59
8099 10351 0.179250 CTTCACACACGGCGAAATCG 60.179 55.000 16.62 0.00 43.27 3.34
8100 10352 0.165944 CCTTCACACACGGCGAAATC 59.834 55.000 16.62 0.00 0.00 2.17
8101 10353 0.250124 TCCTTCACACACGGCGAAAT 60.250 50.000 16.62 0.00 0.00 2.17
8102 10354 0.462225 TTCCTTCACACACGGCGAAA 60.462 50.000 16.62 0.00 0.00 3.46
8103 10355 0.250124 ATTCCTTCACACACGGCGAA 60.250 50.000 16.62 0.00 0.00 4.70
8104 10356 0.948623 CATTCCTTCACACACGGCGA 60.949 55.000 16.62 0.00 0.00 5.54
8105 10357 0.948623 TCATTCCTTCACACACGGCG 60.949 55.000 4.80 4.80 0.00 6.46
8106 10358 1.234821 TTCATTCCTTCACACACGGC 58.765 50.000 0.00 0.00 0.00 5.68
8107 10359 2.420022 GGATTCATTCCTTCACACACGG 59.580 50.000 0.00 0.00 41.78 4.94
8108 10360 2.094258 CGGATTCATTCCTTCACACACG 59.906 50.000 0.00 0.00 42.99 4.49
8109 10361 2.159517 GCGGATTCATTCCTTCACACAC 60.160 50.000 0.00 0.00 42.99 3.82
8110 10362 2.083774 GCGGATTCATTCCTTCACACA 58.916 47.619 0.00 0.00 42.99 3.72
8111 10363 2.083774 TGCGGATTCATTCCTTCACAC 58.916 47.619 0.00 0.00 42.99 3.82
8112 10364 2.488204 TGCGGATTCATTCCTTCACA 57.512 45.000 0.00 0.00 42.99 3.58
8113 10365 4.376340 AATTGCGGATTCATTCCTTCAC 57.624 40.909 0.00 0.00 42.99 3.18
8114 10366 5.404466 AAAATTGCGGATTCATTCCTTCA 57.596 34.783 0.00 0.00 42.99 3.02
8115 10367 6.811170 TGTAAAAATTGCGGATTCATTCCTTC 59.189 34.615 0.00 0.00 42.99 3.46
8116 10368 6.696411 TGTAAAAATTGCGGATTCATTCCTT 58.304 32.000 0.00 0.00 42.99 3.36
8117 10369 6.279513 TGTAAAAATTGCGGATTCATTCCT 57.720 33.333 0.00 0.00 42.99 3.36
8118 10370 7.277539 TGAATGTAAAAATTGCGGATTCATTCC 59.722 33.333 14.89 0.00 35.96 3.01
8119 10371 8.183830 TGAATGTAAAAATTGCGGATTCATTC 57.816 30.769 0.00 0.00 36.61 2.67
8120 10372 8.721019 ATGAATGTAAAAATTGCGGATTCATT 57.279 26.923 0.00 0.00 36.23 2.57
8121 10373 8.605746 CAATGAATGTAAAAATTGCGGATTCAT 58.394 29.630 0.00 0.00 39.55 2.57
8122 10374 7.816513 TCAATGAATGTAAAAATTGCGGATTCA 59.183 29.630 0.00 0.00 33.99 2.57
8123 10375 8.183830 TCAATGAATGTAAAAATTGCGGATTC 57.816 30.769 0.00 0.00 31.50 2.52
8124 10376 8.721019 ATCAATGAATGTAAAAATTGCGGATT 57.279 26.923 0.00 0.00 31.50 3.01
8125 10377 7.167968 CGATCAATGAATGTAAAAATTGCGGAT 59.832 33.333 0.00 0.00 31.50 4.18
8126 10378 6.471841 CGATCAATGAATGTAAAAATTGCGGA 59.528 34.615 0.00 0.00 31.50 5.54
8127 10379 6.471841 TCGATCAATGAATGTAAAAATTGCGG 59.528 34.615 0.00 0.00 31.50 5.69
8128 10380 7.305590 CCTCGATCAATGAATGTAAAAATTGCG 60.306 37.037 0.00 0.00 31.50 4.85
8129 10381 7.515684 GCCTCGATCAATGAATGTAAAAATTGC 60.516 37.037 0.00 0.00 31.50 3.56
8130 10382 7.043192 GGCCTCGATCAATGAATGTAAAAATTG 60.043 37.037 0.00 0.00 0.00 2.32
8131 10383 6.980397 GGCCTCGATCAATGAATGTAAAAATT 59.020 34.615 0.00 0.00 0.00 1.82
8132 10384 6.096705 TGGCCTCGATCAATGAATGTAAAAAT 59.903 34.615 3.32 0.00 0.00 1.82
8133 10385 5.417266 TGGCCTCGATCAATGAATGTAAAAA 59.583 36.000 3.32 0.00 0.00 1.94
8134 10386 4.946772 TGGCCTCGATCAATGAATGTAAAA 59.053 37.500 3.32 0.00 0.00 1.52
8135 10387 4.522114 TGGCCTCGATCAATGAATGTAAA 58.478 39.130 3.32 0.00 0.00 2.01
8136 10388 4.149511 TGGCCTCGATCAATGAATGTAA 57.850 40.909 3.32 0.00 0.00 2.41
8137 10389 3.836365 TGGCCTCGATCAATGAATGTA 57.164 42.857 3.32 0.00 0.00 2.29
8138 10390 2.715749 TGGCCTCGATCAATGAATGT 57.284 45.000 3.32 0.00 0.00 2.71
8139 10391 4.579454 AAATGGCCTCGATCAATGAATG 57.421 40.909 3.32 0.00 0.00 2.67
8140 10392 6.713762 TTTAAATGGCCTCGATCAATGAAT 57.286 33.333 3.32 0.00 0.00 2.57
8141 10393 6.152661 ACTTTTAAATGGCCTCGATCAATGAA 59.847 34.615 3.32 0.00 0.00 2.57
8142 10394 5.652014 ACTTTTAAATGGCCTCGATCAATGA 59.348 36.000 3.32 0.00 0.00 2.57
8143 10395 5.894807 ACTTTTAAATGGCCTCGATCAATG 58.105 37.500 3.32 0.00 0.00 2.82
8144 10396 6.530019 AACTTTTAAATGGCCTCGATCAAT 57.470 33.333 3.32 0.00 0.00 2.57
8145 10397 5.975693 AACTTTTAAATGGCCTCGATCAA 57.024 34.783 3.32 0.00 0.00 2.57
8146 10398 5.975693 AAACTTTTAAATGGCCTCGATCA 57.024 34.783 3.32 0.00 0.00 2.92
8147 10399 6.156519 ACAAAACTTTTAAATGGCCTCGATC 58.843 36.000 3.32 0.00 0.00 3.69
8148 10400 6.096673 ACAAAACTTTTAAATGGCCTCGAT 57.903 33.333 3.32 0.00 0.00 3.59
8149 10401 5.523438 ACAAAACTTTTAAATGGCCTCGA 57.477 34.783 3.32 0.00 0.00 4.04
8150 10402 6.129300 CGTAACAAAACTTTTAAATGGCCTCG 60.129 38.462 3.32 0.00 0.00 4.63
8151 10403 6.698329 ACGTAACAAAACTTTTAAATGGCCTC 59.302 34.615 3.32 0.00 0.00 4.70
8152 10404 6.575267 ACGTAACAAAACTTTTAAATGGCCT 58.425 32.000 3.32 0.00 0.00 5.19
8153 10405 6.476053 TGACGTAACAAAACTTTTAAATGGCC 59.524 34.615 0.00 0.00 0.00 5.36
8154 10406 7.452630 TGACGTAACAAAACTTTTAAATGGC 57.547 32.000 6.11 0.00 0.00 4.40
8155 10407 8.414173 CGATGACGTAACAAAACTTTTAAATGG 58.586 33.333 6.11 0.00 34.56 3.16
8180 10432 1.297745 GCCTTCTCTCTCGCGTACG 60.298 63.158 11.84 11.84 42.01 3.67
8181 10433 1.064458 GGCCTTCTCTCTCGCGTAC 59.936 63.158 5.77 0.00 0.00 3.67
8182 10434 2.119655 GGGCCTTCTCTCTCGCGTA 61.120 63.158 5.77 0.00 0.00 4.42
8183 10435 3.453679 GGGCCTTCTCTCTCGCGT 61.454 66.667 5.77 0.00 0.00 6.01
8184 10436 3.452786 TGGGCCTTCTCTCTCGCG 61.453 66.667 4.53 0.00 0.00 5.87
8185 10437 2.185608 GTGGGCCTTCTCTCTCGC 59.814 66.667 4.53 0.00 0.00 5.03
8186 10438 1.999071 CTCGTGGGCCTTCTCTCTCG 61.999 65.000 4.53 0.00 0.00 4.04
8187 10439 0.968393 ACTCGTGGGCCTTCTCTCTC 60.968 60.000 4.53 0.00 0.00 3.20
8188 10440 0.543174 AACTCGTGGGCCTTCTCTCT 60.543 55.000 4.53 0.00 0.00 3.10
8189 10441 1.183549 TAACTCGTGGGCCTTCTCTC 58.816 55.000 4.53 0.00 0.00 3.20
8190 10442 1.867363 ATAACTCGTGGGCCTTCTCT 58.133 50.000 4.53 0.00 0.00 3.10
8191 10443 2.093658 TGAATAACTCGTGGGCCTTCTC 60.094 50.000 4.53 0.00 0.00 2.87
8192 10444 1.906574 TGAATAACTCGTGGGCCTTCT 59.093 47.619 4.53 0.00 0.00 2.85
8193 10445 2.396590 TGAATAACTCGTGGGCCTTC 57.603 50.000 4.53 0.00 0.00 3.46
8194 10446 2.871096 TTGAATAACTCGTGGGCCTT 57.129 45.000 4.53 0.00 0.00 4.35
8195 10447 2.505819 AGATTGAATAACTCGTGGGCCT 59.494 45.455 4.53 0.00 0.00 5.19
8196 10448 2.919228 AGATTGAATAACTCGTGGGCC 58.081 47.619 0.00 0.00 0.00 5.80
8197 10449 4.694339 AGTAGATTGAATAACTCGTGGGC 58.306 43.478 0.00 0.00 0.00 5.36
8198 10450 7.201617 GGAAAAGTAGATTGAATAACTCGTGGG 60.202 40.741 0.00 0.00 0.00 4.61
8199 10451 7.549488 AGGAAAAGTAGATTGAATAACTCGTGG 59.451 37.037 0.00 0.00 0.00 4.94
8200 10452 8.480643 AGGAAAAGTAGATTGAATAACTCGTG 57.519 34.615 0.00 0.00 0.00 4.35
8201 10453 9.503399 AAAGGAAAAGTAGATTGAATAACTCGT 57.497 29.630 0.00 0.00 0.00 4.18
8202 10454 9.974750 GAAAGGAAAAGTAGATTGAATAACTCG 57.025 33.333 0.00 0.00 0.00 4.18
8208 10460 9.539194 AGGATTGAAAGGAAAAGTAGATTGAAT 57.461 29.630 0.00 0.00 0.00 2.57
8209 10461 8.940397 AGGATTGAAAGGAAAAGTAGATTGAA 57.060 30.769 0.00 0.00 0.00 2.69
8210 10462 8.940397 AAGGATTGAAAGGAAAAGTAGATTGA 57.060 30.769 0.00 0.00 0.00 2.57
8211 10463 9.631452 GAAAGGATTGAAAGGAAAAGTAGATTG 57.369 33.333 0.00 0.00 0.00 2.67
8212 10464 9.367160 TGAAAGGATTGAAAGGAAAAGTAGATT 57.633 29.630 0.00 0.00 0.00 2.40
8213 10465 8.940397 TGAAAGGATTGAAAGGAAAAGTAGAT 57.060 30.769 0.00 0.00 0.00 1.98
8214 10466 8.760980 TTGAAAGGATTGAAAGGAAAAGTAGA 57.239 30.769 0.00 0.00 0.00 2.59
8215 10467 9.631452 GATTGAAAGGATTGAAAGGAAAAGTAG 57.369 33.333 0.00 0.00 0.00 2.57
8216 10468 8.296713 CGATTGAAAGGATTGAAAGGAAAAGTA 58.703 33.333 0.00 0.00 0.00 2.24
8217 10469 7.014230 TCGATTGAAAGGATTGAAAGGAAAAGT 59.986 33.333 0.00 0.00 0.00 2.66
8218 10470 7.370383 TCGATTGAAAGGATTGAAAGGAAAAG 58.630 34.615 0.00 0.00 0.00 2.27
8219 10471 7.283625 TCGATTGAAAGGATTGAAAGGAAAA 57.716 32.000 0.00 0.00 0.00 2.29
8220 10472 6.071952 CCTCGATTGAAAGGATTGAAAGGAAA 60.072 38.462 0.00 0.00 34.35 3.13
8221 10473 5.415701 CCTCGATTGAAAGGATTGAAAGGAA 59.584 40.000 0.00 0.00 34.35 3.36
8222 10474 4.943705 CCTCGATTGAAAGGATTGAAAGGA 59.056 41.667 0.00 0.00 34.35 3.36
8223 10475 4.096984 CCCTCGATTGAAAGGATTGAAAGG 59.903 45.833 0.00 0.00 34.35 3.11
8224 10476 4.096984 CCCCTCGATTGAAAGGATTGAAAG 59.903 45.833 0.89 0.00 34.35 2.62
8225 10477 4.016444 CCCCTCGATTGAAAGGATTGAAA 58.984 43.478 0.89 0.00 34.35 2.69
8226 10478 3.265737 TCCCCTCGATTGAAAGGATTGAA 59.734 43.478 0.89 0.00 34.35 2.69
8227 10479 2.843730 TCCCCTCGATTGAAAGGATTGA 59.156 45.455 0.89 0.00 34.35 2.57
8228 10480 3.281727 TCCCCTCGATTGAAAGGATTG 57.718 47.619 0.89 0.00 34.35 2.67
8229 10481 4.526438 AATCCCCTCGATTGAAAGGATT 57.474 40.909 15.88 15.88 39.84 3.01
8230 10482 4.526438 AAATCCCCTCGATTGAAAGGAT 57.474 40.909 7.38 7.38 40.47 3.24
8231 10483 4.316025 AAAATCCCCTCGATTGAAAGGA 57.684 40.909 3.60 3.60 40.47 3.36
8232 10484 5.067805 CCTTAAAATCCCCTCGATTGAAAGG 59.932 44.000 9.76 9.76 42.02 3.11
8233 10485 5.652452 ACCTTAAAATCCCCTCGATTGAAAG 59.348 40.000 0.00 0.00 40.47 2.62
8234 10486 5.576128 ACCTTAAAATCCCCTCGATTGAAA 58.424 37.500 0.00 0.00 40.47 2.69
8235 10487 5.187621 ACCTTAAAATCCCCTCGATTGAA 57.812 39.130 0.00 0.00 40.47 2.69
8236 10488 4.855298 ACCTTAAAATCCCCTCGATTGA 57.145 40.909 0.00 0.00 40.47 2.57
8237 10489 6.296026 TCATACCTTAAAATCCCCTCGATTG 58.704 40.000 0.00 0.00 40.47 2.67
8238 10490 6.509523 TCATACCTTAAAATCCCCTCGATT 57.490 37.500 0.00 0.00 43.34 3.34
8239 10491 6.101296 ACTTCATACCTTAAAATCCCCTCGAT 59.899 38.462 0.00 0.00 0.00 3.59
8240 10492 5.427481 ACTTCATACCTTAAAATCCCCTCGA 59.573 40.000 0.00 0.00 0.00 4.04
8241 10493 5.681639 ACTTCATACCTTAAAATCCCCTCG 58.318 41.667 0.00 0.00 0.00 4.63
8242 10494 7.834681 AGAAACTTCATACCTTAAAATCCCCTC 59.165 37.037 0.00 0.00 0.00 4.30
8243 10495 7.615757 CAGAAACTTCATACCTTAAAATCCCCT 59.384 37.037 0.00 0.00 0.00 4.79
8244 10496 7.614192 TCAGAAACTTCATACCTTAAAATCCCC 59.386 37.037 0.00 0.00 0.00 4.81
8245 10497 8.575649 TCAGAAACTTCATACCTTAAAATCCC 57.424 34.615 0.00 0.00 0.00 3.85
8265 10517 9.958180 TGTTCATGTTTCCTAGAATATTCAGAA 57.042 29.630 17.56 13.24 0.00 3.02
8266 10518 9.958180 TTGTTCATGTTTCCTAGAATATTCAGA 57.042 29.630 17.56 8.25 0.00 3.27
8323 10575 9.575783 GTTCCTGTTTTTCAAAAGTGTACATAA 57.424 29.630 0.00 0.00 0.00 1.90
8324 10576 8.740906 TGTTCCTGTTTTTCAAAAGTGTACATA 58.259 29.630 0.00 0.00 0.00 2.29
8325 10577 7.607250 TGTTCCTGTTTTTCAAAAGTGTACAT 58.393 30.769 0.00 0.00 0.00 2.29
8326 10578 6.982852 TGTTCCTGTTTTTCAAAAGTGTACA 58.017 32.000 0.00 0.00 0.00 2.90
8327 10579 7.876896 TTGTTCCTGTTTTTCAAAAGTGTAC 57.123 32.000 0.00 0.00 0.00 2.90
8328 10580 8.888579 TTTTGTTCCTGTTTTTCAAAAGTGTA 57.111 26.923 0.00 0.00 34.54 2.90
8329 10581 7.793927 TTTTGTTCCTGTTTTTCAAAAGTGT 57.206 28.000 0.00 0.00 34.54 3.55
8336 10588 9.323985 CCTTTCATATTTTGTTCCTGTTTTTCA 57.676 29.630 0.00 0.00 0.00 2.69
8337 10589 8.773645 CCCTTTCATATTTTGTTCCTGTTTTTC 58.226 33.333 0.00 0.00 0.00 2.29
8338 10590 8.490311 TCCCTTTCATATTTTGTTCCTGTTTTT 58.510 29.630 0.00 0.00 0.00 1.94
8339 10591 8.028652 TCCCTTTCATATTTTGTTCCTGTTTT 57.971 30.769 0.00 0.00 0.00 2.43
8340 10592 7.610580 TCCCTTTCATATTTTGTTCCTGTTT 57.389 32.000 0.00 0.00 0.00 2.83
8341 10593 7.797121 ATCCCTTTCATATTTTGTTCCTGTT 57.203 32.000 0.00 0.00 0.00 3.16
8342 10594 7.797121 AATCCCTTTCATATTTTGTTCCTGT 57.203 32.000 0.00 0.00 0.00 4.00
8343 10595 9.971922 GATAATCCCTTTCATATTTTGTTCCTG 57.028 33.333 0.00 0.00 0.00 3.86
8344 10596 9.942526 AGATAATCCCTTTCATATTTTGTTCCT 57.057 29.630 0.00 0.00 0.00 3.36
8376 10628 8.878769 GGTGTTTACAGAAAATGTTTGTGAATT 58.121 29.630 5.02 0.00 39.96 2.17
8377 10629 8.037758 TGGTGTTTACAGAAAATGTTTGTGAAT 58.962 29.630 5.02 0.00 39.96 2.57
8378 10630 7.378966 TGGTGTTTACAGAAAATGTTTGTGAA 58.621 30.769 5.02 0.00 39.96 3.18
8379 10631 6.925211 TGGTGTTTACAGAAAATGTTTGTGA 58.075 32.000 5.02 0.00 39.96 3.58
8380 10632 7.330700 AGTTGGTGTTTACAGAAAATGTTTGTG 59.669 33.333 0.00 0.00 39.96 3.33
8381 10633 7.382898 AGTTGGTGTTTACAGAAAATGTTTGT 58.617 30.769 0.00 0.00 39.96 2.83
8382 10634 7.826260 AGTTGGTGTTTACAGAAAATGTTTG 57.174 32.000 0.00 0.00 39.96 2.93
8383 10635 8.840833 AAAGTTGGTGTTTACAGAAAATGTTT 57.159 26.923 0.00 0.00 39.96 2.83
8384 10636 8.840833 AAAAGTTGGTGTTTACAGAAAATGTT 57.159 26.923 0.00 0.00 39.96 2.71
8385 10637 8.840833 AAAAAGTTGGTGTTTACAGAAAATGT 57.159 26.923 0.00 0.00 46.45 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.