AutoCloner

Multiple sequence alignment - TraesCS5B01G117400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G117400	chr5B	100.000	4461	0	0	4618	9078	206795461	206799921	0.000000e+00	8239.0
1	TraesCS5B01G117400	chr5B	100.000	4268	0	0	1	4268	206790844	206795111	0.000000e+00	7882.0
2	TraesCS5B01G117400	chr5B	87.421	1105	96	17	3170	4268	232634696	232633629	0.000000e+00	1230.0
3	TraesCS5B01G117400	chr5B	89.144	783	74	8	1	777	354230884	354230107	0.000000e+00	965.0
4	TraesCS5B01G117400	chr5B	98.925	186	2	0	2661	2846	508164973	508165158	5.250000e-87	333.0
5	TraesCS5B01G117400	chr5B	88.073	109	12	1	8928	9036	17008352	17008459	2.660000e-25	128.0
6	TraesCS5B01G117400	chr5B	87.156	109	13	1	8928	9036	17320670	17320777	1.240000e-23	122.0
7	TraesCS5B01G117400	chr5D	96.937	3950	96	7	4994	8940	205571832	205567905	0.000000e+00	6601.0
8	TraesCS5B01G117400	chr5D	95.279	1885	51	12	792	2660	205575643	205573781	0.000000e+00	2953.0
9	TraesCS5B01G117400	chr5D	91.524	1168	73	6	3107	4266	205573478	205572329	0.000000e+00	1585.0
10	TraesCS5B01G117400	chr5D	95.911	269	10	1	2846	3114	205573788	205573521	1.400000e-117	435.0
11	TraesCS5B01G117400	chr5D	93.827	243	12	3	4750	4992	538773713	538773474	6.700000e-96	363.0
12	TraesCS5B01G117400	chr5D	97.129	209	5	1	4750	4958	268716513	268716720	1.450000e-92	351.0
13	TraesCS5B01G117400	chr5D	98.387	186	3	0	2661	2846	236022782	236022597	2.440000e-85	327.0
14	TraesCS5B01G117400	chr5D	98.684	76	1	0	4674	4749	205571905	205571830	1.590000e-27	135.0
15	TraesCS5B01G117400	chr5A	96.505	3948	115	10	5002	8940	245441557	245437624	0.000000e+00	6505.0
16	TraesCS5B01G117400	chr5A	91.746	1890	105	25	778	2660	245445825	245443980	0.000000e+00	2579.0
17	TraesCS5B01G117400	chr5A	91.379	696	27	10	778	1473	245458380	245457718	0.000000e+00	922.0
18	TraesCS5B01G117400	chr5A	95.720	257	9	2	2846	3102	245443987	245443733	6.560000e-111	412.0
19	TraesCS5B01G117400	chr5A	98.936	188	2	0	2660	2847	55382476	55382289	4.060000e-88	337.0
20	TraesCS5B01G117400	chr7D	88.556	1101	113	6	3177	4267	555056458	555055361	0.000000e+00	1323.0
21	TraesCS5B01G117400	chr7D	86.504	1104	116	13	3171	4268	57336641	57335565	0.000000e+00	1182.0
22	TraesCS5B01G117400	chr7D	88.571	805	56	13	1	773	45126976	45127776	0.000000e+00	944.0
23	TraesCS5B01G117400	chr2B	88.645	1092	115	5	3181	4266	45698149	45699237	0.000000e+00	1321.0
24	TraesCS5B01G117400	chr2B	88.054	1105	99	14	3170	4268	606043024	606041947	0.000000e+00	1279.0
25	TraesCS5B01G117400	chr2B	98.925	186	2	0	2661	2846	129038439	129038624	5.250000e-87	333.0
26	TraesCS5B01G117400	chr4A	88.054	1105	99	14	3170	4268	703282999	703281922	0.000000e+00	1279.0
27	TraesCS5B01G117400	chr4A	74.893	701	127	38	6014	6681	500115855	500116539	3.230000e-69	274.0
28	TraesCS5B01G117400	chr4A	91.781	146	12	0	8933	9078	170467409	170467264	4.300000e-48	204.0
29	TraesCS5B01G117400	chr4A	92.806	139	10	0	8934	9072	246429477	246429615	1.550000e-47	202.0
30	TraesCS5B01G117400	chr6B	88.080	1099	99	13	3170	4262	495809863	495810935	0.000000e+00	1275.0
31	TraesCS5B01G117400	chr6B	87.950	805	56	17	1	773	695268509	695269304	0.000000e+00	911.0
32	TraesCS5B01G117400	chr6B	98.387	186	3	0	2661	2846	147849424	147849239	2.440000e-85	327.0
33	TraesCS5B01G117400	chr6B	93.617	141	9	0	8938	9078	430527164	430527024	2.570000e-50	211.0
34	TraesCS5B01G117400	chr6B	88.696	115	12	1	8928	9042	712257852	712257965	1.230000e-28	139.0
35	TraesCS5B01G117400	chr1A	87.659	1102	101	15	3173	4268	568841640	568842712	0.000000e+00	1249.0
36	TraesCS5B01G117400	chr1A	97.608	209	4	1	4750	4958	69507246	69507453	3.120000e-94	357.0
37	TraesCS5B01G117400	chr1A	95.215	209	9	1	4750	4958	303388386	303388593	6.800000e-86	329.0
38	TraesCS5B01G117400	chr1A	86.806	144	18	1	8936	9078	178176749	178176892	9.430000e-35	159.0
39	TraesCS5B01G117400	chr1A	85.315	143	21	0	8936	9078	64845693	64845835	2.040000e-31	148.0
40	TraesCS5B01G117400	chr7B	86.606	1105	102	18	3171	4268	486673235	486674300	0.000000e+00	1179.0
41	TraesCS5B01G117400	chr7B	90.494	789	62	9	4	785	111968796	111968014	0.000000e+00	1029.0
42	TraesCS5B01G117400	chr7B	98.925	186	2	0	2661	2846	33055468	33055283	5.250000e-87	333.0
43	TraesCS5B01G117400	chr7B	98.396	187	3	0	2660	2846	168758195	168758381	6.800000e-86	329.0
44	TraesCS5B01G117400	chr7B	79.448	326	35	17	1	299	238669207	238669527	1.550000e-47	202.0
45	TraesCS5B01G117400	chr7B	83.482	224	14	3	1	201	592992418	592992641	4.330000e-43	187.0
46	TraesCS5B01G117400	chr7B	86.822	129	15	2	1	128	736094862	736094989	9.500000e-30	143.0
47	TraesCS5B01G117400	chr6A	90.121	911	82	4	3173	4077	116958972	116958064	0.000000e+00	1177.0
48	TraesCS5B01G117400	chr6A	96.651	209	6	1	4750	4958	432727526	432727733	6.750000e-91	346.0
49	TraesCS5B01G117400	chr6A	92.174	115	8	1	8928	9042	613347422	613347535	2.620000e-35	161.0
50	TraesCS5B01G117400	chr2D	87.851	996	110	7	3279	4267	400513902	400514893	0.000000e+00	1158.0
51	TraesCS5B01G117400	chr2D	98.086	209	3	1	4750	4958	364808171	364808378	6.700000e-96	363.0
52	TraesCS5B01G117400	chr2D	97.608	209	4	1	4750	4958	298122472	298122679	3.120000e-94	357.0
53	TraesCS5B01G117400	chr2D	97.608	209	4	1	4750	4958	397799005	397798798	3.120000e-94	357.0
54	TraesCS5B01G117400	chr2D	98.387	186	3	0	2661	2846	641497909	641498094	2.440000e-85	327.0
55	TraesCS5B01G117400	chr2D	86.260	131	17	1	8940	9069	375258170	375258300	3.420000e-29	141.0
56	TraesCS5B01G117400	chrUn	89.527	783	70	7	1	775	39248708	39247930	0.000000e+00	981.0
57	TraesCS5B01G117400	chrUn	90.041	241	8	3	4752	4992	20447775	20447999	1.920000e-76	298.0
58	TraesCS5B01G117400	chrUn	90.041	241	8	4	4752	4992	101869700	101869476	1.920000e-76	298.0
59	TraesCS5B01G117400	chrUn	89.212	241	10	3	4752	4992	27861675	27861451	4.150000e-73	287.0
60	TraesCS5B01G117400	chrUn	88.934	244	11	12	4751	4994	52651495	52651268	4.150000e-73	287.0
61	TraesCS5B01G117400	chrUn	89.212	241	10	3	4752	4992	159612698	159612474	4.150000e-73	287.0
62	TraesCS5B01G117400	chrUn	90.431	209	4	2	4750	4958	53914124	53913932	2.510000e-65	261.0
63	TraesCS5B01G117400	chrUn	90.431	209	4	2	4750	4958	88357488	88357296	2.510000e-65	261.0
64	TraesCS5B01G117400	chrUn	89.524	210	6	5	4783	4992	105154824	105154631	1.510000e-62	252.0
65	TraesCS5B01G117400	chrUn	92.045	176	11	3	4817	4992	246239537	246239365	2.530000e-60	244.0
66	TraesCS5B01G117400	chrUn	92.045	176	11	3	4817	4992	295633617	295633445	2.530000e-60	244.0
67	TraesCS5B01G117400	chrUn	100.000	36	0	0	4752	4787	246239574	246239539	5.880000e-07	67.6
68	TraesCS5B01G117400	chrUn	100.000	36	0	0	4752	4787	295633654	295633619	5.880000e-07	67.6
69	TraesCS5B01G117400	chr1B	88.557	804	59	17	1	774	90269079	90268279	0.000000e+00	944.0
70	TraesCS5B01G117400	chr1B	87.623	816	64	15	1	785	456431773	456430964	0.000000e+00	913.0
71	TraesCS5B01G117400	chr1B	87.781	802	68	12	1	775	629943303	629944101	0.000000e+00	911.0
72	TraesCS5B01G117400	chr1B	97.596	208	4	1	4750	4957	311486124	311485918	1.120000e-93	355.0
73	TraesCS5B01G117400	chr1B	93.431	137	9	0	8936	9072	66939807	66939943	4.300000e-48	204.0
74	TraesCS5B01G117400	chr3B	87.485	807	68	16	1	778	739227982	739228784	0.000000e+00	900.0
75	TraesCS5B01G117400	chr2A	85.613	563	55	10	3706	4267	17530349	17530886	1.320000e-157	568.0
76	TraesCS5B01G117400	chr2A	89.062	128	13	1	1	127	541199369	541199496	3.390000e-34	158.0
77	TraesCS5B01G117400	chr2A	88.976	127	13	1	1	126	448579360	448579234	1.220000e-33	156.0
78	TraesCS5B01G117400	chr6D	79.843	764	95	31	1	732	451075766	451076502	3.780000e-138	503.0
79	TraesCS5B01G117400	chr6D	97.129	209	5	1	4750	4958	273567458	273567665	1.450000e-92	351.0
80	TraesCS5B01G117400	chr6D	90.625	256	8	3	4752	4992	216087457	216087711	8.790000e-85	326.0
81	TraesCS5B01G117400	chr6D	91.286	241	5	3	4752	4992	20982495	20982719	1.900000e-81	315.0
82	TraesCS5B01G117400	chr6D	91.388	209	2	3	4750	4958	140997904	140998096	1.160000e-68	272.0
83	TraesCS5B01G117400	chr6D	90.909	209	3	4	4750	4958	422745632	422745440	5.400000e-67	267.0
84	TraesCS5B01G117400	chr6D	90.291	206	4	11	4753	4958	362597427	362597238	1.170000e-63	255.0
85	TraesCS5B01G117400	chr3D	97.608	209	4	1	4750	4958	65655100	65655307	3.120000e-94	357.0
86	TraesCS5B01G117400	chr3D	79.443	287	27	10	3981	4267	434954595	434954341	3.370000e-39	174.0
87	TraesCS5B01G117400	chr3A	97.608	209	4	1	4750	4958	161292932	161293139	3.120000e-94	357.0
88	TraesCS5B01G117400	chr1D	97.129	209	5	1	4750	4958	335505275	335505068	1.450000e-92	351.0
89	TraesCS5B01G117400	chr1D	96.651	209	6	1	4750	4958	231116185	231116392	6.750000e-91	346.0
90	TraesCS5B01G117400	chr1D	91.213	239	5	2	4755	4993	334957162	334957384	2.460000e-80	311.0
91	TraesCS5B01G117400	chr1D	92.090	177	11	3	4817	4993	95481555	95481382	7.040000e-61	246.0
92	TraesCS5B01G117400	chr4B	96.651	209	6	1	4750	4958	72096363	72096156	6.750000e-91	346.0
93	TraesCS5B01G117400	chr4B	98.925	186	2	0	2661	2846	546466280	546466095	5.250000e-87	333.0
94	TraesCS5B01G117400	chr4B	90.400	250	7	6	4745	4994	392656344	392656576	6.840000e-81	313.0
95	TraesCS5B01G117400	chr4B	89.723	253	8	5	4746	4997	86120347	86120582	3.180000e-79	307.0
96	TraesCS5B01G117400	chr4B	72.153	1282	261	75	6006	7226	123451870	123453116	1.480000e-77	302.0
97	TraesCS5B01G117400	chr4B	96.471	170	5	1	4789	4958	631344358	631344526	6.940000e-71	279.0
98	TraesCS5B01G117400	chr4B	90.431	209	4	11	4750	4958	544978548	544978356	2.510000e-65	261.0
99	TraesCS5B01G117400	chr4B	90.431	209	4	11	4750	4958	563351545	563351353	2.510000e-65	261.0
100	TraesCS5B01G117400	chr4D	90.871	241	6	3	4752	4992	104990149	104989925	8.850000e-80	309.0
101	TraesCS5B01G117400	chr4D	90.871	241	6	3	4752	4992	116469216	116469440	8.850000e-80	309.0
102	TraesCS5B01G117400	chr4D	90.871	241	6	3	4752	4992	175961263	175961039	8.850000e-80	309.0
103	TraesCS5B01G117400	chr4D	72.122	1277	267	69	6006	7226	85880059	85881302	4.120000e-78	303.0
104	TraesCS5B01G117400	chr4D	90.456	241	7	3	4752	4992	194520083	194519859	4.120000e-78	303.0
105	TraesCS5B01G117400	chr4D	91.379	232	4	11	4750	4981	324030988	324030773	4.120000e-78	303.0
106	TraesCS5B01G117400	chr4D	90.456	241	7	3	4752	4992	329261681	329261457	4.120000e-78	303.0
107	TraesCS5B01G117400	chr4D	90.456	241	7	3	4752	4992	404039784	404039560	4.120000e-78	303.0
108	TraesCS5B01G117400	chr4D	90.456	241	7	3	4752	4992	442595960	442596184	4.120000e-78	303.0
109	TraesCS5B01G117400	chr4D	90.000	240	8	3	4752	4991	129718846	129718623	6.890000e-76	296.0
110	TraesCS5B01G117400	chr4D	89.958	239	8	3	4755	4993	430716190	430716412	2.480000e-75	294.0
111	TraesCS5B01G117400	chr4D	90.909	209	3	11	4750	4958	470555941	470556133	5.400000e-67	267.0
112	TraesCS5B01G117400	chr4D	89.671	213	5	12	4747	4958	358268407	358268211	1.170000e-63	255.0
113	TraesCS5B01G117400	chr4D	89.474	209	6	11	4750	4958	1061048	1061240	5.440000e-62	250.0
114	TraesCS5B01G117400	chr4D	91.304	184	13	3	4817	5000	387302812	387302632	1.960000e-61	248.0
115	TraesCS5B01G117400	chr4D	91.209	182	12	4	4817	4997	332473640	332473462	2.530000e-60	244.0
116	TraesCS5B01G117400	chr4D	86.735	196	10	9	4752	4947	177892416	177892237	4.300000e-48	204.0
117	TraesCS5B01G117400	chr4D	97.727	88	1	1	4750	4837	314314372	314314286	5.680000e-32	150.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G117400	chr5B	206790844	206799921	9077	False	8060.500000	8239	100.000	1	9078	2	chr5B.!!$F4	9077
1	TraesCS5B01G117400	chr5B	232633629	232634696	1067	True	1230.000000	1230	87.421	3170	4268	1	chr5B.!!$R1	1098
2	TraesCS5B01G117400	chr5B	354230107	354230884	777	True	965.000000	965	89.144	1	777	1	chr5B.!!$R2	776
3	TraesCS5B01G117400	chr5D	205567905	205575643	7738	True	2341.800000	6601	95.667	792	8940	5	chr5D.!!$R3	8148
4	TraesCS5B01G117400	chr5A	245437624	245445825	8201	True	3165.333333	6505	94.657	778	8940	3	chr5A.!!$R3	8162
5	TraesCS5B01G117400	chr5A	245457718	245458380	662	True	922.000000	922	91.379	778	1473	1	chr5A.!!$R2	695
6	TraesCS5B01G117400	chr7D	555055361	555056458	1097	True	1323.000000	1323	88.556	3177	4267	1	chr7D.!!$R2	1090
7	TraesCS5B01G117400	chr7D	57335565	57336641	1076	True	1182.000000	1182	86.504	3171	4268	1	chr7D.!!$R1	1097
8	TraesCS5B01G117400	chr7D	45126976	45127776	800	False	944.000000	944	88.571	1	773	1	chr7D.!!$F1	772
9	TraesCS5B01G117400	chr2B	45698149	45699237	1088	False	1321.000000	1321	88.645	3181	4266	1	chr2B.!!$F1	1085
10	TraesCS5B01G117400	chr2B	606041947	606043024	1077	True	1279.000000	1279	88.054	3170	4268	1	chr2B.!!$R1	1098
11	TraesCS5B01G117400	chr4A	703281922	703282999	1077	True	1279.000000	1279	88.054	3170	4268	1	chr4A.!!$R2	1098
12	TraesCS5B01G117400	chr4A	500115855	500116539	684	False	274.000000	274	74.893	6014	6681	1	chr4A.!!$F2	667
13	TraesCS5B01G117400	chr6B	495809863	495810935	1072	False	1275.000000	1275	88.080	3170	4262	1	chr6B.!!$F1	1092
14	TraesCS5B01G117400	chr6B	695268509	695269304	795	False	911.000000	911	87.950	1	773	1	chr6B.!!$F2	772
15	TraesCS5B01G117400	chr1A	568841640	568842712	1072	False	1249.000000	1249	87.659	3173	4268	1	chr1A.!!$F5	1095
16	TraesCS5B01G117400	chr7B	486673235	486674300	1065	False	1179.000000	1179	86.606	3171	4268	1	chr7B.!!$F3	1097
17	TraesCS5B01G117400	chr7B	111968014	111968796	782	True	1029.000000	1029	90.494	4	785	1	chr7B.!!$R2	781
18	TraesCS5B01G117400	chr6A	116958064	116958972	908	True	1177.000000	1177	90.121	3173	4077	1	chr6A.!!$R1	904
19	TraesCS5B01G117400	chr2D	400513902	400514893	991	False	1158.000000	1158	87.851	3279	4267	1	chr2D.!!$F4	988
20	TraesCS5B01G117400	chrUn	39247930	39248708	778	True	981.000000	981	89.527	1	775	1	chrUn.!!$R2	774
21	TraesCS5B01G117400	chr1B	90268279	90269079	800	True	944.000000	944	88.557	1	774	1	chr1B.!!$R1	773
22	TraesCS5B01G117400	chr1B	456430964	456431773	809	True	913.000000	913	87.623	1	785	1	chr1B.!!$R3	784
23	TraesCS5B01G117400	chr1B	629943303	629944101	798	False	911.000000	911	87.781	1	775	1	chr1B.!!$F2	774
24	TraesCS5B01G117400	chr3B	739227982	739228784	802	False	900.000000	900	87.485	1	778	1	chr3B.!!$F1	777
25	TraesCS5B01G117400	chr2A	17530349	17530886	537	False	568.000000	568	85.613	3706	4267	1	chr2A.!!$F1	561
26	TraesCS5B01G117400	chr6D	451075766	451076502	736	False	503.000000	503	79.843	1	732	1	chr6D.!!$F5	731
27	TraesCS5B01G117400	chr4B	123451870	123453116	1246	False	302.000000	302	72.153	6006	7226	1	chr4B.!!$F2	1220
28	TraesCS5B01G117400	chr4D	85880059	85881302	1243	False	303.000000	303	72.122	6006	7226	1	chr4D.!!$F2	1220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
658	831	0.112995	ATGAATGCCCACACACCAGT	59.887	50.0	0.00	0.00	0.00	4.00	F
679	852	0.949105	CAGTCTTACGTGGCACCACC	60.949	60.0	12.86	0.00	43.49	4.61	F
1773	1962	0.108138	CCTTCCAACTAGACAGCCCG	60.108	60.0	0.00	0.00	0.00	6.13	F
2725	2925	0.109735	GCTCTAGGCGTTGGCAAAAC	60.110	55.0	0.00	0.00	42.47	2.43	F
3314	3571	0.033796	CCAATGCCAGACACCTCCAT	60.034	55.0	0.00	0.00	0.00	3.41	F
4129	4402	0.037303	CATATCTGGGCGCCCTCATT	59.963	55.0	43.34	27.32	36.94	2.57	F
4954	7101	0.036294	GGTCGGGAAGGGAACTCTTG	60.036	60.0	0.00	0.00	42.68	3.02	F
4959	7106	0.034960	GGAAGGGAACTCTTGGGCTC	60.035	60.0	0.00	0.00	42.68	4.70	F
4975	7122	0.175760	GCTCATGCACCCTTCGTAGA	59.824	55.0	0.00	0.00	39.41	2.59	F
4981	7128	0.459078	GCACCCTTCGTAGACCCTAC	59.541	60.0	0.00	0.00	34.32	3.18	F
6763	9014	0.604511	GCCAAATTGCTGCTTGCCTT	60.605	50.0	0.00	0.00	42.00	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1704	1889	3.067180	CCTTTTCCCCATCGATCAACATG	59.933	47.826	0.00	0.00	0.00	3.21	R
1901	2090	4.215613	GGGACATCAGTTTCCACTTTACAC	59.784	45.833	0.00	0.00	33.01	2.90	R
2783	2983	0.107831	ACCGCCTTGCACTTTACTGA	59.892	50.000	0.00	0.00	0.00	3.41	R
4112	4385	0.108585	GAAATGAGGGCGCCCAGATA	59.891	55.000	45.13	28.01	38.92	1.98	R
4935	5224	0.036294	CAAGAGTTCCCTTCCCGACC	60.036	60.000	0.00	0.00	0.00	4.79	R
4956	7103	0.175760	TCTACGAAGGGTGCATGAGC	59.824	55.000	0.00	0.00	42.57	4.26	R
6735	8958	1.067354	CAGCAATTTGGCCCTCTGTTC	60.067	52.381	0.00	0.00	0.00	3.18	R
6804	9055	1.636769	GGGCTGGAAGGAGTAAGGGG	61.637	65.000	0.00	0.00	0.00	4.79	R
6833	9084	3.054065	AGGATAGGAAACTTTGGCAGAGG	60.054	47.826	10.06	0.00	43.67	3.69	R
6874	9139	4.775253	TGCCCCCTTCAACCTAAAAATAAG	59.225	41.667	0.00	0.00	0.00	1.73	R
8651	10925	0.453390	GCAGCCAGCAACCATAACTC	59.547	55.000	0.00	0.00	44.79	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	74	5.945784	CCCTCTTCCATGTTCATTTAACTGA	59.054	40.000	0.00	0.00	38.99	3.41
84	152	5.771469	TCATTTAACTGAAGTTGCCATGTG	58.229	37.500	5.95	0.00	38.90	3.21
197	315	2.235402	GCCACCTACTAACACTAGGCAA	59.765	50.000	0.00	0.00	40.50	4.52
280	434	1.603802	GCCATATGCTTACATGCACGT	59.396	47.619	0.00	0.00	46.33	4.49
306	462	4.654091	GCAGTTGCCATGTACCATAAAT	57.346	40.909	0.00	0.00	34.31	1.40
384	540	2.039818	TGTCGTGTACCCTGCAAAAA	57.960	45.000	0.00	0.00	0.00	1.94
491	658	4.847255	GCAACTAGCAGTTTGGCG	57.153	55.556	0.00	0.00	44.79	5.69
492	659	1.442688	GCAACTAGCAGTTTGGCGC	60.443	57.895	0.00	0.00	44.79	6.53
543	711	0.749649	GACAAATGCCCACACACCAA	59.250	50.000	0.00	0.00	0.00	3.67
608	781	3.314331	CCACACACCGGCTCCTCT	61.314	66.667	0.00	0.00	0.00	3.69
622	795	1.538512	CTCCTCTGTACGGTGAAACGA	59.461	52.381	5.32	0.00	38.12	3.85
658	831	0.112995	ATGAATGCCCACACACCAGT	59.887	50.000	0.00	0.00	0.00	4.00
665	838	1.410850	CCCACACACCAGTCCAGTCT	61.411	60.000	0.00	0.00	0.00	3.24
679	852	0.949105	CAGTCTTACGTGGCACCACC	60.949	60.000	12.86	0.00	43.49	4.61
752	926	1.805428	AAGATGCAAACGCCCACACC	61.805	55.000	0.00	0.00	0.00	4.16
784	958	9.934190	GTGTTAGTGTTTCCGAAAAACTTAATA	57.066	29.630	19.59	9.23	0.00	0.98
789	963	9.511144	AGTGTTTCCGAAAAACTTAATAAAGTG	57.489	29.630	10.47	0.00	45.37	3.16
868	1042	4.499183	AGAAGGACTGAAGCAGAAATACG	58.501	43.478	0.82	0.00	35.18	3.06
1095	1280	3.551407	GATGACCCCTCCTCCGCC	61.551	72.222	0.00	0.00	0.00	6.13
1201	1386	1.990327	ACCCCTTTTCGTATTGGGACT	59.010	47.619	0.00	0.00	42.11	3.85
1206	1391	2.684001	TTTCGTATTGGGACTGCGAT	57.316	45.000	0.00	0.00	0.00	4.58
1502	1687	6.486056	TGAAGCTACGAGGAATCTAGGATAT	58.514	40.000	0.00	0.00	0.00	1.63
1631	1816	1.235724	GCTACCCGAAGTTTGCTTGT	58.764	50.000	0.00	0.00	34.61	3.16
1632	1817	1.197036	GCTACCCGAAGTTTGCTTGTC	59.803	52.381	0.00	0.00	34.61	3.18
1672	1857	6.198966	GTGAGACAATTTTTGTGACCATTGAC	59.801	38.462	0.00	0.00	45.52	3.18
1773	1962	0.108138	CCTTCCAACTAGACAGCCCG	60.108	60.000	0.00	0.00	0.00	6.13
1849	2038	2.806608	AGTCGCTCGTTGGAAGTTTA	57.193	45.000	0.00	0.00	0.00	2.01
1901	2090	8.424133	CCCTTTCTTATCCCTTTTTCATTATGG	58.576	37.037	0.00	0.00	0.00	2.74
2241	2432	1.567357	TGTCCAAGATCATGACCCGA	58.433	50.000	0.00	0.00	0.00	5.14
2274	2465	0.755079	TCACTGCTGACTCACTTGCT	59.245	50.000	0.00	0.00	0.00	3.91
2411	2606	9.802039	AAACTCCTATACTTGTAATTTTCACCA	57.198	29.630	0.00	0.00	0.00	4.17
2483	2679	4.933505	TTCACCATCATTTTGTGCAAGA	57.066	36.364	0.00	0.00	0.00	3.02
2484	2680	5.471556	TTCACCATCATTTTGTGCAAGAT	57.528	34.783	0.00	0.00	0.00	2.40
2522	2718	3.054875	TCACCATCATGACTCTTTCCTGG	60.055	47.826	0.00	1.34	0.00	4.45
2525	2721	3.455910	CCATCATGACTCTTTCCTGGGTA	59.544	47.826	0.00	0.00	0.00	3.69
2526	2722	4.103785	CCATCATGACTCTTTCCTGGGTAT	59.896	45.833	0.00	0.00	0.00	2.73
2527	2723	5.303971	CATCATGACTCTTTCCTGGGTATC	58.696	45.833	0.00	0.00	0.00	2.24
2605	2803	2.653726	ACTGTGAAAACTGCCATGTGA	58.346	42.857	0.00	0.00	0.00	3.58
2606	2804	3.023119	ACTGTGAAAACTGCCATGTGAA	58.977	40.909	0.00	0.00	0.00	3.18
2660	2860	7.061094	GCAAGATACTTAATTGCAACAACTGAC	59.939	37.037	0.00	0.00	46.64	3.51
2661	2861	7.744087	AGATACTTAATTGCAACAACTGACA	57.256	32.000	0.00	0.00	0.00	3.58
2662	2862	8.340618	AGATACTTAATTGCAACAACTGACAT	57.659	30.769	0.00	0.00	0.00	3.06
2663	2863	9.448438	AGATACTTAATTGCAACAACTGACATA	57.552	29.630	0.00	0.00	0.00	2.29
2664	2864	9.708222	GATACTTAATTGCAACAACTGACATAG	57.292	33.333	0.00	0.00	0.00	2.23
2665	2865	7.510549	ACTTAATTGCAACAACTGACATAGT	57.489	32.000	0.00	0.00	42.89	2.12
2707	2907	3.640992	GCTTAAGCGCGCCTAGGC	61.641	66.667	30.33	27.28	37.85	3.93
2708	2908	2.107141	CTTAAGCGCGCCTAGGCT	59.893	61.111	30.55	14.71	42.33	4.58
2709	2909	1.951631	CTTAAGCGCGCCTAGGCTC	60.952	63.158	30.55	22.76	38.88	4.70
2710	2910	2.356818	CTTAAGCGCGCCTAGGCTCT	62.357	60.000	30.55	20.68	38.88	4.09
2711	2911	1.105167	TTAAGCGCGCCTAGGCTCTA	61.105	55.000	30.55	9.53	38.88	2.43
2712	2912	1.516365	TAAGCGCGCCTAGGCTCTAG	61.516	60.000	30.55	18.84	38.88	2.43
2713	2913	4.350441	GCGCGCCTAGGCTCTAGG	62.350	72.222	30.55	16.12	39.32	3.02
2719	2919	1.742768	CCTAGGCTCTAGGCGTTGG	59.257	63.158	13.35	10.22	46.23	3.77
2720	2920	1.068250	CTAGGCTCTAGGCGTTGGC	59.932	63.158	0.00	0.00	46.23	4.52
2721	2921	1.676678	CTAGGCTCTAGGCGTTGGCA	61.677	60.000	0.00	0.00	46.23	4.92
2722	2922	1.261938	TAGGCTCTAGGCGTTGGCAA	61.262	55.000	0.00	0.00	46.23	4.52
2723	2923	1.674322	GGCTCTAGGCGTTGGCAAA	60.674	57.895	0.00	0.00	42.47	3.68
2724	2924	1.241315	GGCTCTAGGCGTTGGCAAAA	61.241	55.000	0.00	0.00	42.47	2.44
2725	2925	0.109735	GCTCTAGGCGTTGGCAAAAC	60.110	55.000	0.00	0.00	42.47	2.43
2726	2926	0.165944	CTCTAGGCGTTGGCAAAACG	59.834	55.000	16.88	16.88	45.56	3.60
2753	2953	4.041240	CGCATAACTACGCTTAATCTGC	57.959	45.455	0.00	0.00	0.00	4.26
2762	2962	2.896289	CGCTTAATCTGCGCATAACTG	58.104	47.619	12.24	0.00	46.72	3.16
2763	2963	2.644078	GCTTAATCTGCGCATAACTGC	58.356	47.619	12.24	8.13	45.31	4.40
2773	2973	2.693797	GCATAACTGCGCATAAGCAT	57.306	45.000	12.24	0.00	46.97	3.79
2774	2974	2.313234	GCATAACTGCGCATAAGCATG	58.687	47.619	12.24	11.51	46.97	4.06
2787	2987	2.956987	GCATGCGCTTTGGTCAGT	59.043	55.556	9.73	0.00	34.30	3.41
2788	2988	2.170738	GCATGCGCTTTGGTCAGTA	58.829	52.632	9.73	0.00	34.30	2.74
2789	2989	0.521291	GCATGCGCTTTGGTCAGTAA	59.479	50.000	9.73	0.00	34.30	2.24
2790	2990	1.068610	GCATGCGCTTTGGTCAGTAAA	60.069	47.619	9.73	0.00	34.30	2.01
2791	2991	2.855180	CATGCGCTTTGGTCAGTAAAG	58.145	47.619	9.73	0.00	38.00	1.85
2792	2992	1.961793	TGCGCTTTGGTCAGTAAAGT	58.038	45.000	9.73	0.00	37.44	2.66
2793	2993	1.601903	TGCGCTTTGGTCAGTAAAGTG	59.398	47.619	9.73	0.00	44.38	3.16
2794	2994	2.316119	CGCTTTGGTCAGTAAAGTGC	57.684	50.000	0.00	0.00	38.37	4.40
2795	2995	1.601903	CGCTTTGGTCAGTAAAGTGCA	59.398	47.619	0.00	0.00	38.37	4.57
2796	2996	2.032799	CGCTTTGGTCAGTAAAGTGCAA	59.967	45.455	0.00	0.00	38.37	4.08
2797	2997	3.632189	GCTTTGGTCAGTAAAGTGCAAG	58.368	45.455	0.00	0.00	37.44	4.01
2798	2998	3.550842	GCTTTGGTCAGTAAAGTGCAAGG	60.551	47.826	0.00	0.00	37.44	3.61
2799	2999	1.604604	TGGTCAGTAAAGTGCAAGGC	58.395	50.000	0.00	0.00	0.00	4.35
2800	3000	0.517316	GGTCAGTAAAGTGCAAGGCG	59.483	55.000	0.00	0.00	0.00	5.52
2801	3001	0.517316	GTCAGTAAAGTGCAAGGCGG	59.483	55.000	0.00	0.00	0.00	6.13
2802	3002	0.107831	TCAGTAAAGTGCAAGGCGGT	59.892	50.000	0.00	0.00	0.00	5.68
2803	3003	0.238289	CAGTAAAGTGCAAGGCGGTG	59.762	55.000	0.00	0.00	0.00	4.94
2804	3004	0.889186	AGTAAAGTGCAAGGCGGTGG	60.889	55.000	0.00	0.00	0.00	4.61
2805	3005	2.265182	TAAAGTGCAAGGCGGTGGC	61.265	57.895	0.00	0.00	38.90	5.01
2806	3006	2.967507	TAAAGTGCAAGGCGGTGGCA	62.968	55.000	0.00	0.00	42.47	4.92
2807	3007	4.892965	AGTGCAAGGCGGTGGCAA	62.893	61.111	0.00	0.00	42.47	4.52
2808	3008	3.910490	GTGCAAGGCGGTGGCAAA	61.910	61.111	0.00	0.00	42.47	3.68
2809	3009	3.150335	TGCAAGGCGGTGGCAAAA	61.150	55.556	0.00	0.00	42.47	2.44
2810	3010	2.661537	GCAAGGCGGTGGCAAAAC	60.662	61.111	0.00	0.00	42.47	2.43
2811	3011	2.354539	CAAGGCGGTGGCAAAACG	60.355	61.111	0.00	0.00	42.47	3.60
2816	3016	2.103143	CGGTGGCAAAACGCACAA	59.897	55.556	0.00	0.00	45.17	3.33
2817	3017	1.299773	CGGTGGCAAAACGCACAAT	60.300	52.632	0.00	0.00	45.17	2.71
2818	3018	0.873743	CGGTGGCAAAACGCACAATT	60.874	50.000	0.00	0.00	45.17	2.32
2819	3019	1.600663	CGGTGGCAAAACGCACAATTA	60.601	47.619	0.00	0.00	45.17	1.40
2820	3020	2.474816	GGTGGCAAAACGCACAATTAA	58.525	42.857	0.00	0.00	45.17	1.40
2821	3021	2.219903	GGTGGCAAAACGCACAATTAAC	59.780	45.455	0.00	0.00	45.17	2.01
2822	3022	2.097637	GTGGCAAAACGCACAATTAACG	60.098	45.455	0.00	0.00	45.17	3.18
2823	3023	1.136748	GGCAAAACGCACAATTAACGC	60.137	47.619	0.00	0.00	45.17	4.84
2824	3024	1.136748	GCAAAACGCACAATTAACGCC	60.137	47.619	0.00	0.00	41.79	5.68
2825	3025	2.389998	CAAAACGCACAATTAACGCCT	58.610	42.857	0.00	0.00	0.00	5.52
2826	3026	3.556513	CAAAACGCACAATTAACGCCTA	58.443	40.909	0.00	0.00	0.00	3.93
2827	3027	3.465122	AAACGCACAATTAACGCCTAG	57.535	42.857	0.00	0.00	0.00	3.02
2828	3028	0.725117	ACGCACAATTAACGCCTAGC	59.275	50.000	0.00	0.00	0.00	3.42
2904	3104	8.347004	TGAAGAAAATCCACTTATGTGCAATA	57.653	30.769	3.24	0.00	42.54	1.90
3031	3231	4.639135	ACTTCTTCAACTTTGACCAAGC	57.361	40.909	8.22	0.00	36.83	4.01
3105	3305	9.793252	GATACACCATGATTATATTTTCATGCC	57.207	33.333	16.51	4.07	45.05	4.40
3157	3409	1.508632	TTCGAGAAAACGCAAGAGGG	58.491	50.000	0.00	0.00	43.62	4.30
3158	3410	0.320421	TCGAGAAAACGCAAGAGGGG	60.320	55.000	0.00	0.00	43.62	4.79
3159	3411	1.876664	GAGAAAACGCAAGAGGGGC	59.123	57.895	0.00	0.00	43.62	5.80
3207	3463	2.367567	ACACACATACAAGTCCGTCCTT	59.632	45.455	0.00	0.00	0.00	3.36
3254	3511	1.279271	GGTGCCCTCAACTACAGACAT	59.721	52.381	0.00	0.00	0.00	3.06
3293	3550	1.522355	CCAGCAGGGTAGCATCACG	60.522	63.158	0.00	0.00	36.85	4.35
3298	3555	2.270850	GGGTAGCATCACGGCCAA	59.729	61.111	2.24	0.00	0.00	4.52
3314	3571	0.033796	CCAATGCCAGACACCTCCAT	60.034	55.000	0.00	0.00	0.00	3.41
3316	3573	0.994247	AATGCCAGACACCTCCATGA	59.006	50.000	0.00	0.00	0.00	3.07
3377	3634	1.556911	CACCCATGTGCCTAGAGAGTT	59.443	52.381	0.00	0.00	35.31	3.01
3495	3757	0.461516	CAGAGCGATGCATCACCAGT	60.462	55.000	25.70	5.31	0.00	4.00
3559	3821	0.401738	CCTTCAAGAGGGGAACAGCA	59.598	55.000	0.00	0.00	42.26	4.41
3567	3829	1.003580	GAGGGGAACAGCATTGAGACA	59.996	52.381	0.00	0.00	0.00	3.41
3807	4069	2.044650	CAGCACACATGGAGGGGG	60.045	66.667	0.00	0.00	0.00	5.40
3953	4226	2.750350	CTTCCGCCACCAGGAACT	59.250	61.111	0.00	0.00	42.33	3.01
4082	4355	1.657751	GGTCGGGGCAGAAAGATTGC	61.658	60.000	0.00	0.00	40.80	3.56
4129	4402	0.037303	CATATCTGGGCGCCCTCATT	59.963	55.000	43.34	27.32	36.94	2.57
4139	4412	2.048603	GCCCTCATTTCTGCCGCTT	61.049	57.895	0.00	0.00	0.00	4.68
4152	4425	2.420568	CCGCTTGCATCAATGGCCT	61.421	57.895	3.32	0.00	0.00	5.19
4640	4913	5.799213	CTCTCATTTTCCTGTAGACTTGGT	58.201	41.667	0.00	0.00	0.00	3.67
4641	4914	5.794894	TCTCATTTTCCTGTAGACTTGGTC	58.205	41.667	0.00	0.00	0.00	4.02
4642	4915	5.306937	TCTCATTTTCCTGTAGACTTGGTCA	59.693	40.000	0.52	0.00	34.60	4.02
4643	4916	5.935945	TCATTTTCCTGTAGACTTGGTCAA	58.064	37.500	0.52	0.00	34.60	3.18
4644	4917	6.361433	TCATTTTCCTGTAGACTTGGTCAAA	58.639	36.000	0.52	0.00	34.60	2.69
4645	4918	6.262273	TCATTTTCCTGTAGACTTGGTCAAAC	59.738	38.462	0.52	0.00	34.60	2.93
4646	4919	5.367945	TTTCCTGTAGACTTGGTCAAACT	57.632	39.130	0.52	0.00	34.60	2.66
4647	4920	5.367945	TTCCTGTAGACTTGGTCAAACTT	57.632	39.130	0.52	0.00	34.60	2.66
4648	4921	6.488769	TTCCTGTAGACTTGGTCAAACTTA	57.511	37.500	0.52	0.00	34.60	2.24
4649	4922	6.488769	TCCTGTAGACTTGGTCAAACTTAA	57.511	37.500	0.52	0.00	34.60	1.85
4650	4923	6.891388	TCCTGTAGACTTGGTCAAACTTAAA	58.109	36.000	0.52	0.00	34.60	1.52
4651	4924	6.990349	TCCTGTAGACTTGGTCAAACTTAAAG	59.010	38.462	0.52	0.00	34.60	1.85
4652	4925	6.990349	CCTGTAGACTTGGTCAAACTTAAAGA	59.010	38.462	0.52	0.00	34.60	2.52
4653	4926	7.497909	CCTGTAGACTTGGTCAAACTTAAAGAA	59.502	37.037	0.52	0.00	34.60	2.52
4654	4927	8.433421	TGTAGACTTGGTCAAACTTAAAGAAG	57.567	34.615	0.52	0.00	35.39	2.85
4655	4928	8.044908	TGTAGACTTGGTCAAACTTAAAGAAGT	58.955	33.333	0.52	0.00	40.30	3.01
4750	5039	9.720769	TTTTCAGAACTACTACAATCTTTAGGG	57.279	33.333	0.00	0.00	0.00	3.53
4752	5041	6.958192	TCAGAACTACTACAATCTTTAGGGGT	59.042	38.462	0.00	0.00	0.00	4.95
4753	5042	7.042335	CAGAACTACTACAATCTTTAGGGGTG	58.958	42.308	0.00	0.00	0.00	4.61
4754	5043	6.729569	AGAACTACTACAATCTTTAGGGGTGT	59.270	38.462	0.00	0.00	0.00	4.16
4755	5044	6.295719	ACTACTACAATCTTTAGGGGTGTG	57.704	41.667	0.00	0.00	0.00	3.82
4757	5046	5.578157	ACTACAATCTTTAGGGGTGTGTT	57.422	39.130	0.00	0.00	0.00	3.32
4758	5047	5.948842	ACTACAATCTTTAGGGGTGTGTTT	58.051	37.500	0.00	0.00	0.00	2.83
4759	5048	5.768164	ACTACAATCTTTAGGGGTGTGTTTG	59.232	40.000	0.00	0.00	0.00	2.93
4760	5049	3.895041	ACAATCTTTAGGGGTGTGTTTGG	59.105	43.478	0.00	0.00	0.00	3.28
4761	5050	3.895041	CAATCTTTAGGGGTGTGTTTGGT	59.105	43.478	0.00	0.00	0.00	3.67
4762	5051	3.673543	TCTTTAGGGGTGTGTTTGGTT	57.326	42.857	0.00	0.00	0.00	3.67
4763	5052	3.292460	TCTTTAGGGGTGTGTTTGGTTG	58.708	45.455	0.00	0.00	0.00	3.77
4764	5053	1.404843	TTAGGGGTGTGTTTGGTTGC	58.595	50.000	0.00	0.00	0.00	4.17
4766	5055	2.419739	GGGGTGTGTTTGGTTGCGT	61.420	57.895	0.00	0.00	0.00	5.24
4767	5056	1.513622	GGGTGTGTTTGGTTGCGTT	59.486	52.632	0.00	0.00	0.00	4.84
4769	5058	0.454196	GGTGTGTTTGGTTGCGTTCT	59.546	50.000	0.00	0.00	0.00	3.01
4770	5059	1.533129	GGTGTGTTTGGTTGCGTTCTC	60.533	52.381	0.00	0.00	0.00	2.87
4771	5060	1.131504	GTGTGTTTGGTTGCGTTCTCA	59.868	47.619	0.00	0.00	0.00	3.27
4772	5061	2.020720	TGTGTTTGGTTGCGTTCTCAT	58.979	42.857	0.00	0.00	0.00	2.90
4773	5062	2.032799	TGTGTTTGGTTGCGTTCTCATC	59.967	45.455	0.00	0.00	0.00	2.92
4774	5063	2.290641	GTGTTTGGTTGCGTTCTCATCT	59.709	45.455	0.00	0.00	0.00	2.90
4776	5065	2.542020	TTGGTTGCGTTCTCATCTCA	57.458	45.000	0.00	0.00	0.00	3.27
4777	5066	2.084610	TGGTTGCGTTCTCATCTCAG	57.915	50.000	0.00	0.00	0.00	3.35
4778	5067	0.723981	GGTTGCGTTCTCATCTCAGC	59.276	55.000	0.00	0.00	0.00	4.26
4781	5070	3.190079	GTTGCGTTCTCATCTCAGCATA	58.810	45.455	0.00	0.00	34.44	3.14
4783	5072	2.428530	TGCGTTCTCATCTCAGCATAGT	59.571	45.455	0.00	0.00	0.00	2.12
4784	5073	3.118992	TGCGTTCTCATCTCAGCATAGTT	60.119	43.478	0.00	0.00	0.00	2.24
4785	5074	3.244814	GCGTTCTCATCTCAGCATAGTTG	59.755	47.826	0.00	0.00	0.00	3.16
4786	5075	4.428209	CGTTCTCATCTCAGCATAGTTGT	58.572	43.478	0.00	0.00	0.00	3.32
4787	5076	4.867047	CGTTCTCATCTCAGCATAGTTGTT	59.133	41.667	0.00	0.00	0.00	2.83
4789	5078	5.016051	TCTCATCTCAGCATAGTTGTTCC	57.984	43.478	0.00	0.00	0.00	3.62
4790	5079	4.125703	CTCATCTCAGCATAGTTGTTCCC	58.874	47.826	0.00	0.00	0.00	3.97
4791	5080	3.776969	TCATCTCAGCATAGTTGTTCCCT	59.223	43.478	0.00	0.00	0.00	4.20
4792	5081	3.895232	TCTCAGCATAGTTGTTCCCTC	57.105	47.619	0.00	0.00	0.00	4.30
4793	5082	3.445008	TCTCAGCATAGTTGTTCCCTCT	58.555	45.455	0.00	0.00	0.00	3.69
4794	5083	3.840666	TCTCAGCATAGTTGTTCCCTCTT	59.159	43.478	0.00	0.00	0.00	2.85
4795	5084	4.081420	TCTCAGCATAGTTGTTCCCTCTTC	60.081	45.833	0.00	0.00	0.00	2.87
4796	5085	3.582647	TCAGCATAGTTGTTCCCTCTTCA	59.417	43.478	0.00	0.00	0.00	3.02
4797	5086	4.225942	TCAGCATAGTTGTTCCCTCTTCAT	59.774	41.667	0.00	0.00	0.00	2.57
4799	5088	3.065925	GCATAGTTGTTCCCTCTTCATGC	59.934	47.826	0.00	0.00	0.00	4.06
4800	5089	2.957402	AGTTGTTCCCTCTTCATGCA	57.043	45.000	0.00	0.00	0.00	3.96
4801	5090	3.446442	AGTTGTTCCCTCTTCATGCAT	57.554	42.857	0.00	0.00	0.00	3.96
4802	5091	3.087031	AGTTGTTCCCTCTTCATGCATG	58.913	45.455	21.07	21.07	0.00	4.06
4803	5092	1.466856	TGTTCCCTCTTCATGCATGC	58.533	50.000	22.25	11.82	0.00	4.06
4804	5093	1.005097	TGTTCCCTCTTCATGCATGCT	59.995	47.619	22.25	1.07	0.00	3.79
4805	5094	1.674962	GTTCCCTCTTCATGCATGCTC	59.325	52.381	22.25	0.88	0.00	4.26
4807	5096	1.282738	TCCCTCTTCATGCATGCTCAA	59.717	47.619	22.25	10.27	0.00	3.02
4809	5098	2.366533	CCTCTTCATGCATGCTCAACT	58.633	47.619	22.25	0.00	0.00	3.16
4810	5099	2.355132	CCTCTTCATGCATGCTCAACTC	59.645	50.000	22.25	0.00	0.00	3.01
4811	5100	3.007635	CTCTTCATGCATGCTCAACTCA	58.992	45.455	22.25	0.00	0.00	3.41
4812	5101	3.414269	TCTTCATGCATGCTCAACTCAA	58.586	40.909	22.25	7.37	0.00	3.02
4813	5102	3.189910	TCTTCATGCATGCTCAACTCAAC	59.810	43.478	22.25	0.00	0.00	3.18
4815	5104	2.227149	TCATGCATGCTCAACTCAACAC	59.773	45.455	22.25	0.00	0.00	3.32
4817	5106	0.242017	GCATGCTCAACTCAACACCC	59.758	55.000	11.37	0.00	0.00	4.61
4819	5108	0.773644	ATGCTCAACTCAACACCCCT	59.226	50.000	0.00	0.00	0.00	4.79
4820	5109	0.108585	TGCTCAACTCAACACCCCTC	59.891	55.000	0.00	0.00	0.00	4.30
4823	5112	2.772287	CTCAACTCAACACCCCTCTTC	58.228	52.381	0.00	0.00	0.00	2.87
4824	5113	2.104792	CTCAACTCAACACCCCTCTTCA	59.895	50.000	0.00	0.00	0.00	3.02
4826	5115	2.816087	CAACTCAACACCCCTCTTCATG	59.184	50.000	0.00	0.00	0.00	3.07
4827	5116	1.271597	ACTCAACACCCCTCTTCATGC	60.272	52.381	0.00	0.00	0.00	4.06
4828	5117	0.770499	TCAACACCCCTCTTCATGCA	59.230	50.000	0.00	0.00	0.00	3.96
4830	5119	1.475280	CAACACCCCTCTTCATGCATG	59.525	52.381	21.07	21.07	0.00	4.06
4831	5120	0.682209	ACACCCCTCTTCATGCATGC	60.682	55.000	22.25	11.82	0.00	4.06
4832	5121	0.395311	CACCCCTCTTCATGCATGCT	60.395	55.000	22.25	1.07	0.00	3.79
4833	5122	0.106819	ACCCCTCTTCATGCATGCTC	60.107	55.000	22.25	0.00	0.00	4.26
4834	5123	0.183014	CCCCTCTTCATGCATGCTCT	59.817	55.000	22.25	3.10	0.00	4.09
4835	5124	1.595466	CCCTCTTCATGCATGCTCTC	58.405	55.000	22.25	0.00	0.00	3.20
4836	5125	1.141254	CCCTCTTCATGCATGCTCTCT	59.859	52.381	22.25	0.00	0.00	3.10
4839	5128	3.532542	CTCTTCATGCATGCTCTCTTCA	58.467	45.455	22.25	0.00	0.00	3.02
4840	5129	4.130857	CTCTTCATGCATGCTCTCTTCAT	58.869	43.478	22.25	0.00	0.00	2.57
4841	5130	3.877508	TCTTCATGCATGCTCTCTTCATG	59.122	43.478	22.25	12.10	43.02	3.07
4850	5139	1.868498	GCTCTCTTCATGCATGCTCTC	59.132	52.381	22.25	3.43	0.00	3.20
4851	5140	2.484065	GCTCTCTTCATGCATGCTCTCT	60.484	50.000	22.25	0.00	0.00	3.10
4853	5142	3.794717	TCTCTTCATGCATGCTCTCTTC	58.205	45.455	22.25	0.00	0.00	2.87
4855	5144	4.130857	CTCTTCATGCATGCTCTCTTCAT	58.869	43.478	22.25	0.00	0.00	2.57
4862	5151	2.350057	ATGCTCTCTTCATGCATGCT	57.650	45.000	22.25	1.07	44.48	3.79
4863	5152	2.124277	TGCTCTCTTCATGCATGCTT	57.876	45.000	22.25	10.16	0.00	3.91
4864	5153	2.014857	TGCTCTCTTCATGCATGCTTC	58.985	47.619	22.25	6.85	0.00	3.86
4865	5154	2.290464	GCTCTCTTCATGCATGCTTCT	58.710	47.619	22.25	0.25	0.00	2.85
4867	5156	3.495377	GCTCTCTTCATGCATGCTTCTAG	59.505	47.826	22.25	15.80	0.00	2.43
4868	5157	4.695396	CTCTCTTCATGCATGCTTCTAGT	58.305	43.478	22.25	0.00	0.00	2.57
4869	5158	4.439968	TCTCTTCATGCATGCTTCTAGTG	58.560	43.478	22.25	12.96	0.00	2.74
4870	5159	4.081254	TCTCTTCATGCATGCTTCTAGTGT	60.081	41.667	22.25	0.00	0.00	3.55
4872	5161	5.922053	TCTTCATGCATGCTTCTAGTGTAT	58.078	37.500	22.25	0.00	0.00	2.29
4874	5163	6.825213	TCTTCATGCATGCTTCTAGTGTATTT	59.175	34.615	22.25	0.00	0.00	1.40
4875	5164	6.367686	TCATGCATGCTTCTAGTGTATTTG	57.632	37.500	22.25	0.00	0.00	2.32
4877	5166	5.550232	TGCATGCTTCTAGTGTATTTGTG	57.450	39.130	20.33	0.00	0.00	3.33
4878	5167	4.142622	TGCATGCTTCTAGTGTATTTGTGC	60.143	41.667	20.33	0.00	0.00	4.57
4881	5170	6.183360	GCATGCTTCTAGTGTATTTGTGCTTA	60.183	38.462	11.37	0.00	0.00	3.09
4882	5171	7.626240	GCATGCTTCTAGTGTATTTGTGCTTAA	60.626	37.037	11.37	0.00	0.00	1.85
4883	5172	7.364522	TGCTTCTAGTGTATTTGTGCTTAAG	57.635	36.000	0.00	0.00	0.00	1.85
4884	5173	6.128282	TGCTTCTAGTGTATTTGTGCTTAAGC	60.128	38.462	20.84	20.84	42.50	3.09
4886	5175	7.277981	GCTTCTAGTGTATTTGTGCTTAAGCTA	59.722	37.037	26.90	14.06	42.66	3.32
4887	5176	8.703604	TTCTAGTGTATTTGTGCTTAAGCTAG	57.296	34.615	26.90	15.65	42.66	3.42
4889	5178	6.727824	AGTGTATTTGTGCTTAAGCTAGTG	57.272	37.500	26.90	0.00	42.66	2.74
4890	5179	6.231211	AGTGTATTTGTGCTTAAGCTAGTGT	58.769	36.000	26.90	13.28	42.66	3.55
4891	5180	6.147821	AGTGTATTTGTGCTTAAGCTAGTGTG	59.852	38.462	26.90	0.00	42.66	3.82
4892	5181	5.411361	TGTATTTGTGCTTAAGCTAGTGTGG	59.589	40.000	26.90	0.00	42.66	4.17
4894	5183	3.040147	TGTGCTTAAGCTAGTGTGGAC	57.960	47.619	26.90	14.83	42.66	4.02
4895	5184	2.632996	TGTGCTTAAGCTAGTGTGGACT	59.367	45.455	26.90	0.00	42.66	3.85
4896	5185	3.254892	GTGCTTAAGCTAGTGTGGACTC	58.745	50.000	26.90	0.00	42.66	3.36
4897	5186	2.897326	TGCTTAAGCTAGTGTGGACTCA	59.103	45.455	26.90	0.02	42.66	3.41
4899	5188	3.868077	GCTTAAGCTAGTGTGGACTCATG	59.132	47.826	20.38	0.00	38.21	3.07
4900	5189	2.393271	AAGCTAGTGTGGACTCATGC	57.607	50.000	0.00	0.00	33.21	4.06
4901	5190	1.269958	AGCTAGTGTGGACTCATGCA	58.730	50.000	0.00	0.00	33.21	3.96
4902	5191	1.066573	AGCTAGTGTGGACTCATGCAC	60.067	52.381	0.00	0.00	46.81	4.57
4903	5192	2.009042	GCTAGTGTGGACTCATGCACC	61.009	57.143	0.00	0.00	46.11	5.01
4904	5193	0.613260	TAGTGTGGACTCATGCACCC	59.387	55.000	0.00	0.00	46.11	4.61
4905	5194	1.130054	AGTGTGGACTCATGCACCCT	61.130	55.000	0.00	0.00	46.11	4.34
4906	5195	0.674895	GTGTGGACTCATGCACCCTC	60.675	60.000	0.00	0.00	46.11	4.30
4907	5196	1.078143	GTGGACTCATGCACCCTCC	60.078	63.158	0.00	0.00	41.12	4.30
4908	5197	1.538629	TGGACTCATGCACCCTCCA	60.539	57.895	0.00	0.00	0.00	3.86
4910	5199	1.131638	GGACTCATGCACCCTCCATA	58.868	55.000	0.00	0.00	0.00	2.74
4911	5200	1.202698	GGACTCATGCACCCTCCATAC	60.203	57.143	0.00	0.00	0.00	2.39
4914	5203	1.487976	CTCATGCACCCTCCATACACT	59.512	52.381	0.00	0.00	0.00	3.55
4915	5204	1.486310	TCATGCACCCTCCATACACTC	59.514	52.381	0.00	0.00	0.00	3.51
4916	5205	1.487976	CATGCACCCTCCATACACTCT	59.512	52.381	0.00	0.00	0.00	3.24
4917	5206	2.543037	TGCACCCTCCATACACTCTA	57.457	50.000	0.00	0.00	0.00	2.43
4919	5208	1.413077	GCACCCTCCATACACTCTACC	59.587	57.143	0.00	0.00	0.00	3.18
4920	5209	2.747177	CACCCTCCATACACTCTACCA	58.253	52.381	0.00	0.00	0.00	3.25
4921	5210	3.104512	CACCCTCCATACACTCTACCAA	58.895	50.000	0.00	0.00	0.00	3.67
4922	5211	3.517901	CACCCTCCATACACTCTACCAAA	59.482	47.826	0.00	0.00	0.00	3.28
4923	5212	3.518303	ACCCTCCATACACTCTACCAAAC	59.482	47.826	0.00	0.00	0.00	2.93
4924	5213	3.517901	CCCTCCATACACTCTACCAAACA	59.482	47.826	0.00	0.00	0.00	2.83
4926	5215	4.504858	CTCCATACACTCTACCAAACACC	58.495	47.826	0.00	0.00	0.00	4.16
4927	5216	3.262405	TCCATACACTCTACCAAACACCC	59.738	47.826	0.00	0.00	0.00	4.61
4928	5217	3.008594	CCATACACTCTACCAAACACCCA	59.991	47.826	0.00	0.00	0.00	4.51
4929	5218	4.505918	CCATACACTCTACCAAACACCCAA	60.506	45.833	0.00	0.00	0.00	4.12
4930	5219	3.655615	ACACTCTACCAAACACCCAAA	57.344	42.857	0.00	0.00	0.00	3.28
4931	5220	3.970842	ACACTCTACCAAACACCCAAAA	58.029	40.909	0.00	0.00	0.00	2.44
4933	5222	3.951680	CACTCTACCAAACACCCAAAAGT	59.048	43.478	0.00	0.00	0.00	2.66
4934	5223	3.951680	ACTCTACCAAACACCCAAAAGTG	59.048	43.478	0.00	0.00	43.65	3.16
4935	5224	3.292460	TCTACCAAACACCCAAAAGTGG	58.708	45.455	0.00	0.00	45.53	4.00
4949	7096	1.775934	AAGTGGGTCGGGAAGGGAAC	61.776	60.000	0.00	0.00	0.00	3.62
4951	7098	1.916777	TGGGTCGGGAAGGGAACTC	60.917	63.158	0.00	0.00	42.68	3.01
4953	7100	1.199425	GGGTCGGGAAGGGAACTCTT	61.199	60.000	0.00	0.00	42.68	2.85
4954	7101	0.036294	GGTCGGGAAGGGAACTCTTG	60.036	60.000	0.00	0.00	42.68	3.02
4955	7102	0.036294	GTCGGGAAGGGAACTCTTGG	60.036	60.000	0.00	0.00	42.68	3.61
4956	7103	1.198759	TCGGGAAGGGAACTCTTGGG	61.199	60.000	0.00	0.00	42.68	4.12
4957	7104	1.000771	GGGAAGGGAACTCTTGGGC	60.001	63.158	0.00	0.00	42.68	5.36
4959	7106	0.034960	GGAAGGGAACTCTTGGGCTC	60.035	60.000	0.00	0.00	42.68	4.70
4962	7109	0.622665	AGGGAACTCTTGGGCTCATG	59.377	55.000	0.00	0.00	32.90	3.07
4963	7110	1.034292	GGGAACTCTTGGGCTCATGC	61.034	60.000	0.00	0.00	38.76	4.06
4964	7111	0.322816	GGAACTCTTGGGCTCATGCA	60.323	55.000	0.00	0.00	41.91	3.96
4965	7112	0.807496	GAACTCTTGGGCTCATGCAC	59.193	55.000	0.00	0.00	44.33	4.57
4966	7113	0.610232	AACTCTTGGGCTCATGCACC	60.610	55.000	0.00	0.00	43.18	5.01
4967	7114	1.751927	CTCTTGGGCTCATGCACCC	60.752	63.158	14.31	14.31	43.18	4.61
4971	7118	2.825836	GGGCTCATGCACCCTTCG	60.826	66.667	14.00	0.00	43.36	3.79
4973	7120	1.220749	GGCTCATGCACCCTTCGTA	59.779	57.895	0.00	0.00	41.91	3.43
4975	7122	0.175760	GCTCATGCACCCTTCGTAGA	59.824	55.000	0.00	0.00	39.41	2.59
4979	7126	0.617820	ATGCACCCTTCGTAGACCCT	60.618	55.000	0.00	0.00	34.32	4.34
4981	7128	0.459078	GCACCCTTCGTAGACCCTAC	59.541	60.000	0.00	0.00	34.32	3.18
4982	7129	1.109609	CACCCTTCGTAGACCCTACC	58.890	60.000	0.00	0.00	34.32	3.18
4983	7130	0.706433	ACCCTTCGTAGACCCTACCA	59.294	55.000	0.00	0.00	34.32	3.25
4984	7131	1.077663	ACCCTTCGTAGACCCTACCAA	59.922	52.381	0.00	0.00	34.32	3.67
4985	7132	2.181975	CCCTTCGTAGACCCTACCAAA	58.818	52.381	0.00	0.00	34.32	3.28
4986	7133	2.093816	CCCTTCGTAGACCCTACCAAAC	60.094	54.545	0.00	0.00	34.32	2.93
4987	7134	2.564062	CCTTCGTAGACCCTACCAAACA	59.436	50.000	0.00	0.00	34.32	2.83
4988	7135	3.582780	CTTCGTAGACCCTACCAAACAC	58.417	50.000	0.00	0.00	34.32	3.32
4990	7137	2.297033	TCGTAGACCCTACCAAACACAC	59.703	50.000	0.00	0.00	0.00	3.82
4991	7138	2.611224	CGTAGACCCTACCAAACACACC	60.611	54.545	0.00	0.00	0.00	4.16
4992	7139	0.769247	AGACCCTACCAAACACACCC	59.231	55.000	0.00	0.00	0.00	4.61
4993	7140	0.769247	GACCCTACCAAACACACCCT	59.231	55.000	0.00	0.00	0.00	4.34
4994	7141	1.980036	GACCCTACCAAACACACCCTA	59.020	52.381	0.00	0.00	0.00	3.53
4996	7143	2.262637	CCCTACCAAACACACCCTAGA	58.737	52.381	0.00	0.00	0.00	2.43
4997	7144	2.844348	CCCTACCAAACACACCCTAGAT	59.156	50.000	0.00	0.00	0.00	1.98
4998	7145	3.370527	CCCTACCAAACACACCCTAGATG	60.371	52.174	0.00	0.00	0.00	2.90
5000	7147	4.019681	CCTACCAAACACACCCTAGATGAA	60.020	45.833	0.00	0.00	0.00	2.57
5006	7199	6.039717	CCAAACACACCCTAGATGAAATATGG	59.960	42.308	0.00	0.00	0.00	2.74
5042	7235	2.169144	TCACGTGATCATTGATGAGCCT	59.831	45.455	15.76	0.00	42.22	4.58
5045	7238	3.058450	CGTGATCATTGATGAGCCTCTC	58.942	50.000	3.32	0.00	42.22	3.20
5080	7273	2.648059	AGTTGCCCTTATCTGCATGTC	58.352	47.619	0.00	0.00	37.33	3.06
5215	7408	6.112058	GCAGAGAGACCTTGTTTAGATTGAT	58.888	40.000	0.00	0.00	0.00	2.57
5420	7613	1.201429	AGAGGGGGTTGAGCGTCAAT	61.201	55.000	4.21	0.00	38.79	2.57
5488	7681	5.972327	ATTCACTCTCTTTGATCCCTGAT	57.028	39.130	0.00	0.00	0.00	2.90
5677	7870	1.948834	CTTGTTGTCACACCTGCATCA	59.051	47.619	0.00	0.00	30.32	3.07
5713	7906	1.761174	GACTTCAAGTGGCCTGGGA	59.239	57.895	3.32	0.00	0.00	4.37
5813	8006	1.379916	CAGGGCATGGGAGTTGACA	59.620	57.895	0.00	0.00	0.00	3.58
5870	8063	1.163554	CACCTTCTTCCTCTGCAAGC	58.836	55.000	0.00	0.00	0.00	4.01
5930	8123	0.837272	GATTCCCTCCGATTGGGTCA	59.163	55.000	0.00	0.00	44.84	4.02
6763	9014	0.604511	GCCAAATTGCTGCTTGCCTT	60.605	50.000	0.00	0.00	42.00	4.35
6804	9055	1.273048	TGCAGCCATTCAATTGGTGAC	59.727	47.619	5.42	0.00	39.11	3.67
6833	9084	2.572104	TCCTTCCAGCCCTTCTCTTAAC	59.428	50.000	0.00	0.00	0.00	2.01
6874	9139	9.408069	CCTATCCTAATTTCGTCAATGTACTAC	57.592	37.037	0.00	0.00	0.00	2.73
7016	9281	2.979813	GTTCGTCCATGTTCATTTGTGC	59.020	45.455	0.00	0.00	0.00	4.57
7096	9361	3.733337	CGAAGCATCCTTACTTATGGCT	58.267	45.455	0.00	0.00	0.00	4.75
7253	9518	5.726980	ATATGTTGAACCTTGTTGCATGT	57.273	34.783	0.00	0.00	0.00	3.21
7372	9638	4.532126	TCCTCTGTAAGGCAAAGATTGAGA	59.468	41.667	0.00	0.00	45.78	3.27
7375	9641	6.038050	CCTCTGTAAGGCAAAGATTGAGAATC	59.962	42.308	0.00	0.00	38.67	2.52
7490	9756	8.740906	CAGATTAGGTGTCTGAGTCTAGTAAAA	58.259	37.037	0.00	0.00	44.57	1.52
7644	9910	5.879223	AGTCTTCTGTCATCATTCATCAACC	59.121	40.000	0.00	0.00	0.00	3.77
7989	10263	1.376424	CTCGCAGCAGGAATGGTGT	60.376	57.895	8.97	0.00	39.28	4.16
8023	10297	4.437587	GGGCTCATGGCTGGTGCT	62.438	66.667	6.20	0.00	41.46	4.40
8081	10355	4.080582	TGAAACGATCCAGGGTGTGATTAT	60.081	41.667	0.00	0.00	0.00	1.28
8111	10385	3.613030	TCAATACTTTCCTAAACCCGCC	58.387	45.455	0.00	0.00	0.00	6.13
8314	10588	5.124457	ACATCAGTGATTTCATGGCTACAAC	59.876	40.000	1.86	0.00	0.00	3.32
8504	10778	7.042335	ACATACTACTCAGGCTGACAAATAAC	58.958	38.462	14.43	0.00	0.00	1.89
8647	10921	3.204467	ATCGGGTTGGTGTGTGGGG	62.204	63.158	0.00	0.00	0.00	4.96
8648	10922	4.966787	CGGGTTGGTGTGTGGGGG	62.967	72.222	0.00	0.00	0.00	5.40
8649	10923	3.828023	GGGTTGGTGTGTGGGGGT	61.828	66.667	0.00	0.00	0.00	4.95
8650	10924	2.203437	GGTTGGTGTGTGGGGGTC	60.203	66.667	0.00	0.00	0.00	4.46
8651	10925	2.593436	GTTGGTGTGTGGGGGTCG	60.593	66.667	0.00	0.00	0.00	4.79
8831	11105	6.095440	ACACTGTTTGGATTAGGCAATGATAC	59.905	38.462	0.00	0.00	0.00	2.24
8845	11119	5.420739	GGCAATGATACCCAACCTTTAAGAA	59.579	40.000	0.00	0.00	0.00	2.52
8889	11163	6.782082	TGTGTATATCTGTCTGCTCTTCTT	57.218	37.500	0.00	0.00	0.00	2.52
8941	11215	6.749036	ATCAACTGGGGTTAGATACTAAGG	57.251	41.667	0.00	0.00	33.88	2.69
8942	11216	4.966805	TCAACTGGGGTTAGATACTAAGGG	59.033	45.833	0.00	0.00	33.88	3.95
8943	11217	3.315596	ACTGGGGTTAGATACTAAGGGC	58.684	50.000	0.00	0.00	0.00	5.19
8944	11218	2.638363	CTGGGGTTAGATACTAAGGGCC	59.362	54.545	0.00	0.00	0.00	5.80
8945	11219	1.983691	GGGGTTAGATACTAAGGGCCC	59.016	57.143	16.46	16.46	0.00	5.80
8946	11220	1.622312	GGGTTAGATACTAAGGGCCCG	59.378	57.143	18.44	4.53	0.00	6.13
8947	11221	2.323599	GGTTAGATACTAAGGGCCCGT	58.676	52.381	18.44	17.51	0.00	5.28
8948	11222	2.702478	GGTTAGATACTAAGGGCCCGTT	59.298	50.000	17.88	13.55	0.00	4.44
8949	11223	3.244009	GGTTAGATACTAAGGGCCCGTTC	60.244	52.174	17.88	7.35	0.00	3.95
8950	11224	1.038280	AGATACTAAGGGCCCGTTCG	58.962	55.000	17.88	10.40	0.00	3.95
8951	11225	0.033090	GATACTAAGGGCCCGTTCGG	59.967	60.000	17.88	9.42	0.00	4.30
8952	11226	0.397535	ATACTAAGGGCCCGTTCGGA	60.398	55.000	17.88	4.61	0.00	4.55
8953	11227	0.614415	TACTAAGGGCCCGTTCGGAA	60.614	55.000	17.88	0.00	0.00	4.30
8954	11228	1.297364	CTAAGGGCCCGTTCGGAAA	59.703	57.895	17.88	0.00	0.00	3.13
8955	11229	1.003476	TAAGGGCCCGTTCGGAAAC	60.003	57.895	17.88	1.97	0.00	2.78
8956	11230	1.766625	TAAGGGCCCGTTCGGAAACA	61.767	55.000	17.88	0.00	34.93	2.83
8957	11231	3.359523	GGGCCCGTTCGGAAACAC	61.360	66.667	5.69	0.00	34.93	3.32
8958	11232	2.281276	GGCCCGTTCGGAAACACT	60.281	61.111	13.08	0.00	34.93	3.55
8959	11233	2.322830	GGCCCGTTCGGAAACACTC	61.323	63.158	13.08	0.00	34.93	3.51
8960	11234	2.322830	GCCCGTTCGGAAACACTCC	61.323	63.158	13.08	0.00	41.40	3.85
8967	11241	2.046217	GGAAACACTCCGGCTCCC	60.046	66.667	0.00	0.00	33.37	4.30
8968	11242	2.747686	GAAACACTCCGGCTCCCA	59.252	61.111	0.00	0.00	0.00	4.37
8969	11243	1.376037	GAAACACTCCGGCTCCCAG	60.376	63.158	0.00	0.00	0.00	4.45
8970	11244	3.553095	AAACACTCCGGCTCCCAGC	62.553	63.158	0.00	0.00	41.46	4.85
8972	11246	4.154347	CACTCCGGCTCCCAGCTC	62.154	72.222	0.00	0.00	41.99	4.09
8992	11266	3.059982	CGGAGCTGAAGTGGTGGA	58.940	61.111	0.00	0.00	0.00	4.02
8993	11267	1.079543	CGGAGCTGAAGTGGTGGAG	60.080	63.158	0.00	0.00	0.00	3.86
8994	11268	1.376553	GGAGCTGAAGTGGTGGAGC	60.377	63.158	0.00	0.00	0.00	4.70
8995	11269	1.739562	GAGCTGAAGTGGTGGAGCG	60.740	63.158	0.00	0.00	36.52	5.03
8996	11270	2.743928	GCTGAAGTGGTGGAGCGG	60.744	66.667	0.00	0.00	0.00	5.52
8997	11271	3.059982	CTGAAGTGGTGGAGCGGA	58.940	61.111	0.00	0.00	0.00	5.54
8998	11272	1.079543	CTGAAGTGGTGGAGCGGAG	60.080	63.158	0.00	0.00	0.00	4.63
9018	11292	2.652662	CGGAGCGCAGTTCATATTTC	57.347	50.000	11.47	0.00	40.41	2.17
9019	11293	1.261619	CGGAGCGCAGTTCATATTTCC	59.738	52.381	11.47	2.03	40.41	3.13
9020	11294	1.261619	GGAGCGCAGTTCATATTTCCG	59.738	52.381	11.47	0.00	40.41	4.30
9021	11295	1.261619	GAGCGCAGTTCATATTTCCGG	59.738	52.381	11.47	0.00	37.80	5.14
9022	11296	1.134521	AGCGCAGTTCATATTTCCGGA	60.135	47.619	11.47	0.00	0.00	5.14
9023	11297	1.261619	GCGCAGTTCATATTTCCGGAG	59.738	52.381	3.34	0.00	0.00	4.63
9024	11298	1.261619	CGCAGTTCATATTTCCGGAGC	59.738	52.381	3.34	0.00	0.00	4.70
9025	11299	2.565841	GCAGTTCATATTTCCGGAGCT	58.434	47.619	3.34	0.00	0.00	4.09
9026	11300	2.289002	GCAGTTCATATTTCCGGAGCTG	59.711	50.000	3.34	0.00	41.17	4.24
9027	11301	2.289002	CAGTTCATATTTCCGGAGCTGC	59.711	50.000	3.34	0.00	34.06	5.25
9028	11302	2.171448	AGTTCATATTTCCGGAGCTGCT	59.829	45.455	3.34	0.00	0.00	4.24
9029	11303	3.388024	AGTTCATATTTCCGGAGCTGCTA	59.612	43.478	3.34	0.00	0.00	3.49
9030	11304	4.040952	AGTTCATATTTCCGGAGCTGCTAT	59.959	41.667	3.34	0.00	0.00	2.97
9031	11305	4.623932	TCATATTTCCGGAGCTGCTATT	57.376	40.909	3.34	0.00	0.00	1.73
9032	11306	4.569943	TCATATTTCCGGAGCTGCTATTC	58.430	43.478	3.34	0.00	0.00	1.75
9033	11307	4.284490	TCATATTTCCGGAGCTGCTATTCT	59.716	41.667	3.34	0.00	0.00	2.40
9034	11308	2.315925	TTTCCGGAGCTGCTATTCTG	57.684	50.000	3.34	0.00	0.00	3.02
9035	11309	1.195115	TTCCGGAGCTGCTATTCTGT	58.805	50.000	3.34	0.00	0.00	3.41
9036	11310	1.195115	TCCGGAGCTGCTATTCTGTT	58.805	50.000	0.00	0.00	0.00	3.16
9037	11311	1.134699	TCCGGAGCTGCTATTCTGTTG	60.135	52.381	0.00	0.00	0.00	3.33
9038	11312	0.654683	CGGAGCTGCTATTCTGTTGC	59.345	55.000	0.15	0.00	0.00	4.17
9039	11313	1.741732	CGGAGCTGCTATTCTGTTGCT	60.742	52.381	0.15	0.00	0.00	3.91
9040	11314	1.939255	GGAGCTGCTATTCTGTTGCTC	59.061	52.381	0.15	0.00	44.08	4.26
9041	11315	1.939255	GAGCTGCTATTCTGTTGCTCC	59.061	52.381	0.15	0.00	40.44	4.70
9042	11316	0.654683	GCTGCTATTCTGTTGCTCCG	59.345	55.000	0.00	0.00	0.00	4.63
9043	11317	0.654683	CTGCTATTCTGTTGCTCCGC	59.345	55.000	0.00	0.00	0.00	5.54
9044	11318	0.036483	TGCTATTCTGTTGCTCCGCA	60.036	50.000	0.00	0.00	36.47	5.69
9045	11319	1.303309	GCTATTCTGTTGCTCCGCAT	58.697	50.000	0.00	0.00	38.76	4.73
9046	11320	1.672881	GCTATTCTGTTGCTCCGCATT	59.327	47.619	0.00	0.00	38.76	3.56
9047	11321	2.286654	GCTATTCTGTTGCTCCGCATTC	60.287	50.000	0.00	0.00	38.76	2.67
9048	11322	1.098050	ATTCTGTTGCTCCGCATTCC	58.902	50.000	0.00	0.00	38.76	3.01
9049	11323	0.250684	TTCTGTTGCTCCGCATTCCA	60.251	50.000	0.00	0.00	38.76	3.53
9050	11324	0.674581	TCTGTTGCTCCGCATTCCAG	60.675	55.000	0.00	0.00	38.76	3.86
9051	11325	2.262471	CTGTTGCTCCGCATTCCAGC	62.262	60.000	0.00	0.00	38.76	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
84	152	3.447229	ACCATGGCAATTGTAGTTTAGCC	59.553	43.478	13.04	0.00	42.32	3.93
88	156	3.324556	AGCAACCATGGCAATTGTAGTTT	59.675	39.130	13.04	0.00	0.00	2.66
197	315	2.089980	GCACATGGCAACTCTCTCAAT	58.910	47.619	0.00	0.00	43.97	2.57
306	462	1.268066	TACCCGAGTTGCCATGTGTA	58.732	50.000	0.00	0.00	0.00	2.90
343	499	3.917400	ACTGCCTAGTGTGCACGTAAGT	61.917	50.000	13.13	5.90	44.77	2.24
490	657	4.180946	CGTCTCCTCTCCCACGCG	62.181	72.222	3.53	3.53	0.00	6.01
491	658	3.827898	CCGTCTCCTCTCCCACGC	61.828	72.222	0.00	0.00	0.00	5.34
492	659	3.141488	CCCGTCTCCTCTCCCACG	61.141	72.222	0.00	0.00	0.00	4.94
512	680	1.616620	CATTTGTCATTTCGCCCACG	58.383	50.000	0.00	0.00	42.01	4.94
521	689	1.344114	GGTGTGTGGGCATTTGTCATT	59.656	47.619	0.00	0.00	0.00	2.57
525	693	0.463620	GTTGGTGTGTGGGCATTTGT	59.536	50.000	0.00	0.00	0.00	2.83
543	711	0.107410	TTTCACTCACGCACAAGGGT	60.107	50.000	0.00	0.00	42.26	4.34
603	775	1.608055	TCGTTTCACCGTACAGAGGA	58.392	50.000	0.00	0.00	0.00	3.71
608	781	1.198767	CACGTTCGTTTCACCGTACA	58.801	50.000	0.00	0.00	31.42	2.90
658	831	1.116536	TGGTGCCACGTAAGACTGGA	61.117	55.000	0.00	0.00	43.62	3.86
679	852	1.068402	TGCACGAATCTTGGCATGTTG	60.068	47.619	0.00	0.00	0.00	3.33
724	897	1.472082	CGTTTGCATCTTGCCCATACA	59.528	47.619	0.00	0.00	44.23	2.29
752	926	3.713288	TCGGAAACACTAACACTCACAG	58.287	45.455	0.00	0.00	0.00	3.66
757	931	6.505044	AAGTTTTTCGGAAACACTAACACT	57.495	33.333	19.35	4.40	32.81	3.55
868	1042	0.459585	TTCCCTTCGATAGCGTGTGC	60.460	55.000	0.00	0.00	43.24	4.57
1077	1262	3.917760	GCGGAGGAGGGGTCATCG	61.918	72.222	0.00	0.00	0.00	3.84
1095	1280	3.943034	TTGGCGTTGGCGTTGACG	61.943	61.111	0.00	0.00	41.24	4.35
1096	1281	2.353030	GTTGGCGTTGGCGTTGAC	60.353	61.111	0.00	0.00	41.24	3.18
1097	1282	3.943034	CGTTGGCGTTGGCGTTGA	61.943	61.111	0.00	0.00	41.24	3.18
1098	1283	4.973360	CCGTTGGCGTTGGCGTTG	62.973	66.667	0.00	0.00	41.24	4.10
1143	1328	2.770164	ACGGAAGATGTTTGGGAGAG	57.230	50.000	0.00	0.00	0.00	3.20
1201	1386	4.586421	AGTCAGAGAATCCAATCTATCGCA	59.414	41.667	0.00	0.00	33.66	5.10
1502	1687	7.235606	TCTCAAAAGAGAAGTGGGAAGAGATAA	59.764	37.037	0.00	0.00	0.00	1.75
1672	1857	9.906660	ACACAACATACCAATATTTGTACAAAG	57.093	29.630	24.22	13.66	33.32	2.77
1704	1889	3.067180	CCTTTTCCCCATCGATCAACATG	59.933	47.826	0.00	0.00	0.00	3.21
1901	2090	4.215613	GGGACATCAGTTTCCACTTTACAC	59.784	45.833	0.00	0.00	33.01	2.90
2238	2429	4.508124	GCAGTGACATAAGTAGGATTTCGG	59.492	45.833	0.00	0.00	0.00	4.30
2241	2432	6.299805	TCAGCAGTGACATAAGTAGGATTT	57.700	37.500	0.00	0.00	0.00	2.17
2274	2465	4.467082	ACCATCTTTTGCAATGCCTCAATA	59.533	37.500	1.53	0.00	0.00	1.90
2458	2653	6.766944	TCTTGCACAAAATGATGGTGAAAAAT	59.233	30.769	0.00	0.00	34.52	1.82
2560	2756	5.690865	AGGTGTTCTCAATTAGTTCAACCA	58.309	37.500	0.00	0.00	0.00	3.67
2690	2890	3.640992	GCCTAGGCGCGCTTAAGC	61.641	66.667	32.29	28.27	37.78	3.09
2691	2891	2.356818	AGAGCCTAGGCGCGCTTAAG	62.357	60.000	32.29	22.56	45.41	1.85
2692	2892	1.105167	TAGAGCCTAGGCGCGCTTAA	61.105	55.000	32.29	15.41	45.41	1.85
2693	2893	1.516365	CTAGAGCCTAGGCGCGCTTA	61.516	60.000	32.29	27.04	45.41	3.09
2694	2894	2.833582	TAGAGCCTAGGCGCGCTT	60.834	61.111	32.29	27.46	45.41	4.68
2695	2895	3.291383	CTAGAGCCTAGGCGCGCT	61.291	66.667	32.29	25.96	45.41	5.92
2696	2896	4.350441	CCTAGAGCCTAGGCGCGC	62.350	72.222	28.76	25.94	45.41	6.86
2701	2901	1.742768	CCAACGCCTAGAGCCTAGG	59.257	63.158	18.85	18.85	38.78	3.02
2702	2902	1.068250	GCCAACGCCTAGAGCCTAG	59.932	63.158	0.00	3.06	38.78	3.02
2703	2903	1.261938	TTGCCAACGCCTAGAGCCTA	61.262	55.000	0.00	0.00	38.78	3.93
2704	2904	2.124507	TTTGCCAACGCCTAGAGCCT	62.125	55.000	0.00	0.00	38.78	4.58
2705	2905	1.241315	TTTTGCCAACGCCTAGAGCC	61.241	55.000	0.00	0.00	38.78	4.70
2706	2906	0.109735	GTTTTGCCAACGCCTAGAGC	60.110	55.000	0.00	0.00	38.52	4.09
2707	2907	0.165944	CGTTTTGCCAACGCCTAGAG	59.834	55.000	5.44	0.00	36.82	2.43
2708	2908	2.240230	CGTTTTGCCAACGCCTAGA	58.760	52.632	5.44	0.00	36.82	2.43
2709	2909	4.838959	CGTTTTGCCAACGCCTAG	57.161	55.556	5.44	0.00	36.82	3.02
2714	2914	1.201332	GCAATGCGTTTTGCCAACG	59.799	52.632	12.66	12.66	44.94	4.10
2732	2932	4.041240	GCAGATTAAGCGTAGTTATGCG	57.959	45.455	0.00	0.00	42.84	4.73
2743	2943	2.644078	GCAGTTATGCGCAGATTAAGC	58.356	47.619	18.32	11.91	43.87	3.09
2755	2955	2.313234	GCATGCTTATGCGCAGTTATG	58.687	47.619	18.32	15.92	44.10	1.90
2756	2956	2.693797	GCATGCTTATGCGCAGTTAT	57.306	45.000	18.32	0.10	44.10	1.89
2770	2970	0.521291	TTACTGACCAAAGCGCATGC	59.479	50.000	11.47	7.91	43.24	4.06
2771	2971	2.226437	ACTTTACTGACCAAAGCGCATG	59.774	45.455	11.47	8.38	36.63	4.06
2772	2972	2.226437	CACTTTACTGACCAAAGCGCAT	59.774	45.455	11.47	0.00	36.63	4.73
2773	2973	1.601903	CACTTTACTGACCAAAGCGCA	59.398	47.619	11.47	0.00	36.63	6.09
2774	2974	1.663161	GCACTTTACTGACCAAAGCGC	60.663	52.381	0.00	0.00	36.63	5.92
2775	2975	1.601903	TGCACTTTACTGACCAAAGCG	59.398	47.619	0.00	0.00	36.63	4.68
2776	2976	3.550842	CCTTGCACTTTACTGACCAAAGC	60.551	47.826	0.00	0.00	36.63	3.51
2777	2977	3.550842	GCCTTGCACTTTACTGACCAAAG	60.551	47.826	0.00	0.00	38.65	2.77
2778	2978	2.360801	GCCTTGCACTTTACTGACCAAA	59.639	45.455	0.00	0.00	0.00	3.28
2779	2979	1.953686	GCCTTGCACTTTACTGACCAA	59.046	47.619	0.00	0.00	0.00	3.67
2780	2980	1.604604	GCCTTGCACTTTACTGACCA	58.395	50.000	0.00	0.00	0.00	4.02
2781	2981	0.517316	CGCCTTGCACTTTACTGACC	59.483	55.000	0.00	0.00	0.00	4.02
2782	2982	0.517316	CCGCCTTGCACTTTACTGAC	59.483	55.000	0.00	0.00	0.00	3.51
2783	2983	0.107831	ACCGCCTTGCACTTTACTGA	59.892	50.000	0.00	0.00	0.00	3.41
2784	2984	0.238289	CACCGCCTTGCACTTTACTG	59.762	55.000	0.00	0.00	0.00	2.74
2785	2985	0.889186	CCACCGCCTTGCACTTTACT	60.889	55.000	0.00	0.00	0.00	2.24
2786	2986	1.579429	CCACCGCCTTGCACTTTAC	59.421	57.895	0.00	0.00	0.00	2.01
2787	2987	2.265182	GCCACCGCCTTGCACTTTA	61.265	57.895	0.00	0.00	0.00	1.85
2788	2988	3.605664	GCCACCGCCTTGCACTTT	61.606	61.111	0.00	0.00	0.00	2.66
2789	2989	4.892965	TGCCACCGCCTTGCACTT	62.893	61.111	0.00	0.00	0.00	3.16
2790	2990	4.892965	TTGCCACCGCCTTGCACT	62.893	61.111	0.00	0.00	34.16	4.40
2791	2991	3.438017	TTTTGCCACCGCCTTGCAC	62.438	57.895	0.00	0.00	34.16	4.57
2792	2992	3.150335	TTTTGCCACCGCCTTGCA	61.150	55.556	0.00	0.00	0.00	4.08
2793	2993	2.661537	GTTTTGCCACCGCCTTGC	60.662	61.111	0.00	0.00	0.00	4.01
2794	2994	2.354539	CGTTTTGCCACCGCCTTG	60.355	61.111	0.00	0.00	0.00	3.61
2795	2995	4.279043	GCGTTTTGCCACCGCCTT	62.279	61.111	0.00	0.00	41.50	4.35
2798	2998	4.560856	TGTGCGTTTTGCCACCGC	62.561	61.111	0.00	0.00	45.60	5.68
2799	2999	0.873743	AATTGTGCGTTTTGCCACCG	60.874	50.000	0.00	0.00	45.60	4.94
2800	3000	2.141535	TAATTGTGCGTTTTGCCACC	57.858	45.000	0.00	0.00	45.60	4.61
2801	3001	2.097637	CGTTAATTGTGCGTTTTGCCAC	60.098	45.455	0.00	0.00	45.60	5.01
2802	3002	2.120232	CGTTAATTGTGCGTTTTGCCA	58.880	42.857	0.00	0.00	45.60	4.92
2803	3003	1.136748	GCGTTAATTGTGCGTTTTGCC	60.137	47.619	0.00	0.00	45.60	4.52
2804	3004	1.136748	GGCGTTAATTGTGCGTTTTGC	60.137	47.619	0.00	0.00	46.70	3.68
2805	3005	2.389998	AGGCGTTAATTGTGCGTTTTG	58.610	42.857	0.00	0.00	0.00	2.44
2806	3006	2.785713	AGGCGTTAATTGTGCGTTTT	57.214	40.000	0.00	0.00	0.00	2.43
2807	3007	2.413634	GCTAGGCGTTAATTGTGCGTTT	60.414	45.455	0.00	0.00	0.00	3.60
2808	3008	1.129811	GCTAGGCGTTAATTGTGCGTT	59.870	47.619	0.00	0.00	0.00	4.84
2809	3009	0.725117	GCTAGGCGTTAATTGTGCGT	59.275	50.000	0.00	0.00	0.00	5.24
2810	3010	3.509266	GCTAGGCGTTAATTGTGCG	57.491	52.632	0.00	0.00	0.00	5.34
2836	3036	9.462606	TCTCTACTTATCAGTTGTCATAGTTCA	57.537	33.333	0.00	0.00	34.06	3.18
2837	3037	9.944663	CTCTCTACTTATCAGTTGTCATAGTTC	57.055	37.037	0.00	0.00	34.06	3.01
2838	3038	9.469097	ACTCTCTACTTATCAGTTGTCATAGTT	57.531	33.333	0.00	0.00	34.06	2.24
2842	3042	9.469097	AAGTACTCTCTACTTATCAGTTGTCAT	57.531	33.333	0.00	0.00	36.14	3.06
2843	3043	8.865420	AAGTACTCTCTACTTATCAGTTGTCA	57.135	34.615	0.00	0.00	36.14	3.58
2845	3045	9.962809	AGTAAGTACTCTCTACTTATCAGTTGT	57.037	33.333	0.00	0.00	40.70	3.32
2847	3047	9.398538	CCAGTAAGTACTCTCTACTTATCAGTT	57.601	37.037	0.00	0.00	40.70	3.16
2848	3048	8.770322	TCCAGTAAGTACTCTCTACTTATCAGT	58.230	37.037	0.00	0.00	40.70	3.41
2849	3049	9.616156	TTCCAGTAAGTACTCTCTACTTATCAG	57.384	37.037	0.00	0.00	40.70	2.90
2850	3050	9.393512	GTTCCAGTAAGTACTCTCTACTTATCA	57.606	37.037	0.00	0.00	40.70	2.15
2851	3051	9.393512	TGTTCCAGTAAGTACTCTCTACTTATC	57.606	37.037	0.00	0.00	40.70	1.75
2852	3052	9.924010	ATGTTCCAGTAAGTACTCTCTACTTAT	57.076	33.333	0.00	0.00	40.70	1.73
2870	3070	6.336842	AGTGGATTTTCTTCAATGTTCCAG	57.663	37.500	0.00	0.00	32.74	3.86
2953	3153	8.491958	GGGGGAGAAGTCAATTAATAGTTAAGA	58.508	37.037	0.00	0.00	0.00	2.10
3165	3417	3.858989	TGTGTGTGTGTGTGCGCG	61.859	61.111	0.00	0.00	0.00	6.86
3166	3418	2.277247	GTGTGTGTGTGTGTGCGC	60.277	61.111	0.00	0.00	0.00	6.09
3167	3419	1.225991	GTGTGTGTGTGTGTGTGCG	60.226	57.895	0.00	0.00	0.00	5.34
3168	3420	0.454285	GTGTGTGTGTGTGTGTGTGC	60.454	55.000	0.00	0.00	0.00	4.57
3207	3463	3.424703	ACCTAGTTGTAGTCGCTTGGTA	58.575	45.455	0.00	0.00	36.79	3.25
3254	3511	0.739462	CGAGGCCTAATGTCGTTGCA	60.739	55.000	4.42	0.00	0.00	4.08
3284	3541	3.826221	GCATTGGCCGTGATGCTA	58.174	55.556	23.60	0.00	43.98	3.49
3298	3555	0.994247	TTCATGGAGGTGTCTGGCAT	59.006	50.000	0.00	0.00	0.00	4.40
3314	3571	0.674581	CCTGGAGCTGCAATCGTTCA	60.675	55.000	9.92	0.00	0.00	3.18
3316	3573	0.674895	GTCCTGGAGCTGCAATCGTT	60.675	55.000	9.92	0.00	0.00	3.85
3407	3669	1.680338	GCTTCCCCAACGAATGCTAT	58.320	50.000	0.00	0.00	0.00	2.97
3495	3757	0.179065	CTTGATGCGGCAGATGGAGA	60.179	55.000	9.25	0.00	0.00	3.71
3559	3821	2.434884	CAGCGGCGGTGTCTCAAT	60.435	61.111	29.14	0.00	0.00	2.57
3728	3990	2.105006	TCTGAGGTCTTTGCTCATGC	57.895	50.000	0.00	0.00	40.20	4.06
3762	4024	0.663568	CGACGTTCTTCGCCAAGTCT	60.664	55.000	0.00	0.00	44.19	3.24
3807	4069	0.248949	GACGACGACATTCCTAGGCC	60.249	60.000	2.96	0.00	0.00	5.19
3820	4082	4.436998	GCCCCTCCTGTGACGACG	62.437	72.222	0.00	0.00	0.00	5.12
3966	4239	3.630312	GGTCCTTGACAGTTGTTGCTTTA	59.370	43.478	0.00	0.00	33.68	1.85
4046	4319	2.616458	CCCACCCTTCCCCCTTCAG	61.616	68.421	0.00	0.00	0.00	3.02
4047	4320	2.534272	CCCACCCTTCCCCCTTCA	60.534	66.667	0.00	0.00	0.00	3.02
4049	4322	2.534533	GACCCACCCTTCCCCCTT	60.535	66.667	0.00	0.00	0.00	3.95
4101	4374	1.829456	CCCAGATATGGGTCGTGCA	59.171	57.895	17.89	0.00	44.08	4.57
4112	4385	0.108585	GAAATGAGGGCGCCCAGATA	59.891	55.000	45.13	28.01	38.92	1.98
4139	4412	3.142162	CGGCAGGCCATTGATGCA	61.142	61.111	15.08	0.00	41.78	3.96
4617	4890	5.799213	ACCAAGTCTACAGGAAAATGAGAG	58.201	41.667	0.00	0.00	0.00	3.20
4618	4891	5.306937	TGACCAAGTCTACAGGAAAATGAGA	59.693	40.000	0.00	0.00	33.15	3.27
4619	4892	5.551233	TGACCAAGTCTACAGGAAAATGAG	58.449	41.667	0.00	0.00	33.15	2.90
4620	4893	5.560722	TGACCAAGTCTACAGGAAAATGA	57.439	39.130	0.00	0.00	33.15	2.57
4621	4894	6.263168	AGTTTGACCAAGTCTACAGGAAAATG	59.737	38.462	0.00	0.00	33.15	2.32
4622	4895	6.365520	AGTTTGACCAAGTCTACAGGAAAAT	58.634	36.000	0.00	0.00	33.15	1.82
4623	4896	5.751586	AGTTTGACCAAGTCTACAGGAAAA	58.248	37.500	0.00	0.00	33.15	2.29
4624	4897	5.367945	AGTTTGACCAAGTCTACAGGAAA	57.632	39.130	0.00	0.00	33.15	3.13
4625	4898	5.367945	AAGTTTGACCAAGTCTACAGGAA	57.632	39.130	0.00	0.00	33.15	3.36
4626	4899	6.488769	TTAAGTTTGACCAAGTCTACAGGA	57.511	37.500	0.00	0.00	33.15	3.86
4627	4900	6.990349	TCTTTAAGTTTGACCAAGTCTACAGG	59.010	38.462	0.00	0.00	33.15	4.00
4628	4901	8.433421	TTCTTTAAGTTTGACCAAGTCTACAG	57.567	34.615	0.00	0.00	33.15	2.74
4629	4902	8.044908	ACTTCTTTAAGTTTGACCAAGTCTACA	58.955	33.333	0.00	0.00	43.60	2.74
4630	4903	8.434733	ACTTCTTTAAGTTTGACCAAGTCTAC	57.565	34.615	0.00	0.00	43.60	2.59
4648	4921	9.841295	TCCAAATGTGTACTAAGTAACTTCTTT	57.159	29.630	0.00	0.00	0.00	2.52
4649	4922	9.841295	TTCCAAATGTGTACTAAGTAACTTCTT	57.159	29.630	0.00	0.00	0.00	2.52
4656	4929	8.701895	CCCTCTATTCCAAATGTGTACTAAGTA	58.298	37.037	0.00	0.00	0.00	2.24
4657	4930	7.402071	TCCCTCTATTCCAAATGTGTACTAAGT	59.598	37.037	0.00	0.00	0.00	2.24
4658	4931	7.792032	TCCCTCTATTCCAAATGTGTACTAAG	58.208	38.462	0.00	0.00	0.00	2.18
4659	4932	7.402071	ACTCCCTCTATTCCAAATGTGTACTAA	59.598	37.037	0.00	0.00	0.00	2.24
4660	4933	6.901300	ACTCCCTCTATTCCAAATGTGTACTA	59.099	38.462	0.00	0.00	0.00	1.82
4661	4934	5.726793	ACTCCCTCTATTCCAAATGTGTACT	59.273	40.000	0.00	0.00	0.00	2.73
4662	4935	5.990668	ACTCCCTCTATTCCAAATGTGTAC	58.009	41.667	0.00	0.00	0.00	2.90
4663	4936	6.670464	TGTACTCCCTCTATTCCAAATGTGTA	59.330	38.462	0.00	0.00	0.00	2.90
4664	4937	5.487488	TGTACTCCCTCTATTCCAAATGTGT	59.513	40.000	0.00	0.00	0.00	3.72
4665	4938	5.989477	TGTACTCCCTCTATTCCAAATGTG	58.011	41.667	0.00	0.00	0.00	3.21
4666	4939	6.183361	GGATGTACTCCCTCTATTCCAAATGT	60.183	42.308	0.00	0.00	38.19	2.71
4667	4940	6.043706	AGGATGTACTCCCTCTATTCCAAATG	59.956	42.308	7.50	0.00	46.27	2.32
4668	4941	6.043706	CAGGATGTACTCCCTCTATTCCAAAT	59.956	42.308	7.50	0.00	46.27	2.32
4669	4942	5.366768	CAGGATGTACTCCCTCTATTCCAAA	59.633	44.000	7.50	0.00	46.27	3.28
4670	4943	4.901849	CAGGATGTACTCCCTCTATTCCAA	59.098	45.833	7.50	0.00	46.27	3.53
4671	4944	4.170053	TCAGGATGTACTCCCTCTATTCCA	59.830	45.833	7.50	0.00	46.27	3.53
4672	4945	4.742012	TCAGGATGTACTCCCTCTATTCC	58.258	47.826	7.50	0.00	46.27	3.01
4736	5025	5.183140	CCAAACACACCCCTAAAGATTGTAG	59.817	44.000	0.00	0.00	0.00	2.74
4749	5038	0.526739	GAACGCAACCAAACACACCC	60.527	55.000	0.00	0.00	0.00	4.61
4750	5039	0.454196	AGAACGCAACCAAACACACC	59.546	50.000	0.00	0.00	0.00	4.16
4752	5041	1.454201	TGAGAACGCAACCAAACACA	58.546	45.000	0.00	0.00	0.00	3.72
4753	5042	2.290641	AGATGAGAACGCAACCAAACAC	59.709	45.455	0.00	0.00	0.00	3.32
4754	5043	2.548057	GAGATGAGAACGCAACCAAACA	59.452	45.455	0.00	0.00	0.00	2.83
4755	5044	2.548057	TGAGATGAGAACGCAACCAAAC	59.452	45.455	0.00	0.00	0.00	2.93
4757	5046	2.416747	CTGAGATGAGAACGCAACCAA	58.583	47.619	0.00	0.00	0.00	3.67
4758	5047	1.941209	GCTGAGATGAGAACGCAACCA	60.941	52.381	0.00	0.00	0.00	3.67
4759	5048	0.723981	GCTGAGATGAGAACGCAACC	59.276	55.000	0.00	0.00	0.00	3.77
4760	5049	1.432514	TGCTGAGATGAGAACGCAAC	58.567	50.000	0.00	0.00	0.00	4.17
4761	5050	2.391616	ATGCTGAGATGAGAACGCAA	57.608	45.000	0.00	0.00	0.00	4.85
4762	5051	2.428530	ACTATGCTGAGATGAGAACGCA	59.571	45.455	0.00	0.00	0.00	5.24
4763	5052	3.090952	ACTATGCTGAGATGAGAACGC	57.909	47.619	0.00	0.00	0.00	4.84
4764	5053	4.428209	ACAACTATGCTGAGATGAGAACG	58.572	43.478	3.36	0.00	0.00	3.95
4766	5055	5.423015	GGAACAACTATGCTGAGATGAGAA	58.577	41.667	3.36	0.00	0.00	2.87
4767	5056	4.141846	GGGAACAACTATGCTGAGATGAGA	60.142	45.833	3.36	0.00	0.00	3.27
4769	5058	3.776969	AGGGAACAACTATGCTGAGATGA	59.223	43.478	3.36	0.00	0.00	2.92
4770	5059	4.125703	GAGGGAACAACTATGCTGAGATG	58.874	47.826	0.00	0.00	0.00	2.90
4771	5060	4.036518	AGAGGGAACAACTATGCTGAGAT	58.963	43.478	0.00	0.00	0.00	2.75
4772	5061	3.445008	AGAGGGAACAACTATGCTGAGA	58.555	45.455	0.00	0.00	0.00	3.27
4773	5062	3.902881	AGAGGGAACAACTATGCTGAG	57.097	47.619	0.00	0.00	0.00	3.35
4774	5063	3.582647	TGAAGAGGGAACAACTATGCTGA	59.417	43.478	0.00	0.00	0.00	4.26
4776	5065	4.521146	CATGAAGAGGGAACAACTATGCT	58.479	43.478	0.00	0.00	0.00	3.79
4777	5066	3.065925	GCATGAAGAGGGAACAACTATGC	59.934	47.826	0.00	0.00	32.78	3.14
4778	5067	4.264253	TGCATGAAGAGGGAACAACTATG	58.736	43.478	0.00	0.00	0.00	2.23
4781	5070	2.957402	TGCATGAAGAGGGAACAACT	57.043	45.000	0.00	0.00	0.00	3.16
4783	5072	1.820519	GCATGCATGAAGAGGGAACAA	59.179	47.619	30.64	0.00	0.00	2.83
4784	5073	1.005097	AGCATGCATGAAGAGGGAACA	59.995	47.619	30.64	0.00	0.00	3.18
4785	5074	1.674962	GAGCATGCATGAAGAGGGAAC	59.325	52.381	30.64	8.88	0.00	3.62
4786	5075	1.282738	TGAGCATGCATGAAGAGGGAA	59.717	47.619	30.64	3.24	0.00	3.97
4787	5076	0.913924	TGAGCATGCATGAAGAGGGA	59.086	50.000	30.64	3.05	0.00	4.20
4789	5078	2.355132	GAGTTGAGCATGCATGAAGAGG	59.645	50.000	30.64	2.65	0.00	3.69
4790	5079	3.007635	TGAGTTGAGCATGCATGAAGAG	58.992	45.455	30.64	3.47	0.00	2.85
4791	5080	3.062122	TGAGTTGAGCATGCATGAAGA	57.938	42.857	30.64	9.30	0.00	2.87
4792	5081	3.057806	TGTTGAGTTGAGCATGCATGAAG	60.058	43.478	30.64	4.30	0.00	3.02
4793	5082	2.885894	TGTTGAGTTGAGCATGCATGAA	59.114	40.909	30.64	12.93	0.00	2.57
4794	5083	2.227149	GTGTTGAGTTGAGCATGCATGA	59.773	45.455	30.64	6.68	0.00	3.07
4795	5084	2.592194	GTGTTGAGTTGAGCATGCATG	58.408	47.619	22.70	22.70	0.00	4.06
4796	5085	1.542915	GGTGTTGAGTTGAGCATGCAT	59.457	47.619	21.98	4.75	0.00	3.96
4797	5086	0.953727	GGTGTTGAGTTGAGCATGCA	59.046	50.000	21.98	0.00	0.00	3.96
4799	5088	0.883833	GGGGTGTTGAGTTGAGCATG	59.116	55.000	0.00	0.00	0.00	4.06
4800	5089	0.773644	AGGGGTGTTGAGTTGAGCAT	59.226	50.000	0.00	0.00	0.00	3.79
4801	5090	0.108585	GAGGGGTGTTGAGTTGAGCA	59.891	55.000	0.00	0.00	0.00	4.26
4802	5091	0.398318	AGAGGGGTGTTGAGTTGAGC	59.602	55.000	0.00	0.00	0.00	4.26
4803	5092	2.104792	TGAAGAGGGGTGTTGAGTTGAG	59.895	50.000	0.00	0.00	0.00	3.02
4804	5093	2.123589	TGAAGAGGGGTGTTGAGTTGA	58.876	47.619	0.00	0.00	0.00	3.18
4805	5094	2.638480	TGAAGAGGGGTGTTGAGTTG	57.362	50.000	0.00	0.00	0.00	3.16
4807	5096	1.271597	GCATGAAGAGGGGTGTTGAGT	60.272	52.381	0.00	0.00	0.00	3.41
4809	5098	0.770499	TGCATGAAGAGGGGTGTTGA	59.230	50.000	0.00	0.00	0.00	3.18
4810	5099	1.475280	CATGCATGAAGAGGGGTGTTG	59.525	52.381	22.59	0.00	0.00	3.33
4811	5100	1.843368	CATGCATGAAGAGGGGTGTT	58.157	50.000	22.59	0.00	0.00	3.32
4812	5101	0.682209	GCATGCATGAAGAGGGGTGT	60.682	55.000	30.64	0.00	0.00	4.16
4813	5102	0.395311	AGCATGCATGAAGAGGGGTG	60.395	55.000	30.64	1.04	0.00	4.61
4815	5104	0.183014	AGAGCATGCATGAAGAGGGG	59.817	55.000	30.64	1.01	0.00	4.79
4817	5106	2.623878	AGAGAGCATGCATGAAGAGG	57.376	50.000	30.64	2.65	0.00	3.69
4819	5108	3.622166	TGAAGAGAGCATGCATGAAGA	57.378	42.857	30.64	1.46	0.00	2.87
4820	5109	4.216366	CATGAAGAGAGCATGCATGAAG	57.784	45.455	30.64	4.30	38.82	3.02
4830	5119	1.868498	GAGAGCATGCATGAAGAGAGC	59.132	52.381	30.64	12.80	0.00	4.09
4831	5120	3.462483	AGAGAGCATGCATGAAGAGAG	57.538	47.619	30.64	1.83	0.00	3.20
4832	5121	3.197116	TGAAGAGAGCATGCATGAAGAGA	59.803	43.478	30.64	2.61	0.00	3.10
4833	5122	3.532542	TGAAGAGAGCATGCATGAAGAG	58.467	45.455	30.64	3.47	0.00	2.85
4834	5123	3.622166	TGAAGAGAGCATGCATGAAGA	57.378	42.857	30.64	1.46	0.00	2.87
4835	5124	4.216366	CATGAAGAGAGCATGCATGAAG	57.784	45.455	30.64	4.30	38.82	3.02
4844	5133	2.014857	GAAGCATGCATGAAGAGAGCA	58.985	47.619	30.64	0.00	43.14	4.26
4846	5135	4.508492	CACTAGAAGCATGCATGAAGAGAG	59.492	45.833	30.64	20.56	0.00	3.20
4850	5139	6.615264	AATACACTAGAAGCATGCATGAAG	57.385	37.500	30.64	18.42	0.00	3.02
4851	5140	6.375174	ACAAATACACTAGAAGCATGCATGAA	59.625	34.615	30.64	8.23	0.00	2.57
4853	5142	5.969435	CACAAATACACTAGAAGCATGCATG	59.031	40.000	22.70	22.70	0.00	4.06
4855	5144	4.142622	GCACAAATACACTAGAAGCATGCA	60.143	41.667	21.98	0.00	0.00	3.96
4857	5146	5.808042	AGCACAAATACACTAGAAGCATG	57.192	39.130	0.00	0.00	0.00	4.06
4858	5147	7.414540	GCTTAAGCACAAATACACTAGAAGCAT	60.415	37.037	22.59	0.00	41.59	3.79
4859	5148	6.128282	GCTTAAGCACAAATACACTAGAAGCA	60.128	38.462	22.59	0.00	41.59	3.91
4860	5149	6.092807	AGCTTAAGCACAAATACACTAGAAGC	59.907	38.462	28.39	0.00	45.16	3.86
4861	5150	7.602517	AGCTTAAGCACAAATACACTAGAAG	57.397	36.000	28.39	0.00	45.16	2.85
4862	5151	8.311836	ACTAGCTTAAGCACAAATACACTAGAA	58.688	33.333	28.39	0.00	45.16	2.10
4863	5152	7.759886	CACTAGCTTAAGCACAAATACACTAGA	59.240	37.037	28.39	0.00	45.16	2.43
4864	5153	7.545965	ACACTAGCTTAAGCACAAATACACTAG	59.454	37.037	28.39	17.91	45.16	2.57
4865	5154	7.330946	CACACTAGCTTAAGCACAAATACACTA	59.669	37.037	28.39	7.76	45.16	2.74
4867	5156	6.307155	CACACTAGCTTAAGCACAAATACAC	58.693	40.000	28.39	0.00	45.16	2.90
4868	5157	5.411361	CCACACTAGCTTAAGCACAAATACA	59.589	40.000	28.39	3.13	45.16	2.29
4869	5158	5.642063	TCCACACTAGCTTAAGCACAAATAC	59.358	40.000	28.39	0.00	45.16	1.89
4870	5159	5.642063	GTCCACACTAGCTTAAGCACAAATA	59.358	40.000	28.39	11.21	45.16	1.40
4872	5161	3.813166	GTCCACACTAGCTTAAGCACAAA	59.187	43.478	28.39	10.41	45.16	2.83
4874	5163	2.632996	AGTCCACACTAGCTTAAGCACA	59.367	45.455	28.39	14.93	45.16	4.57
4875	5164	3.254892	GAGTCCACACTAGCTTAAGCAC	58.745	50.000	28.39	15.04	36.81	4.40
4877	5166	3.594603	TGAGTCCACACTAGCTTAAGC	57.405	47.619	20.09	20.09	35.26	3.09
4878	5167	3.868077	GCATGAGTCCACACTAGCTTAAG	59.132	47.826	0.00	0.00	30.63	1.85
4881	5170	1.625315	TGCATGAGTCCACACTAGCTT	59.375	47.619	0.00	0.00	30.63	3.74
4882	5171	1.066573	GTGCATGAGTCCACACTAGCT	60.067	52.381	0.00	0.00	30.63	3.32
4883	5172	1.363744	GTGCATGAGTCCACACTAGC	58.636	55.000	0.00	0.00	30.63	3.42
4884	5173	1.406069	GGGTGCATGAGTCCACACTAG	60.406	57.143	0.00	0.00	32.72	2.57
4886	5175	1.130054	AGGGTGCATGAGTCCACACT	61.130	55.000	0.00	0.00	40.69	3.55
4887	5176	0.674895	GAGGGTGCATGAGTCCACAC	60.675	60.000	0.00	0.00	35.63	3.82
4889	5178	1.078143	GGAGGGTGCATGAGTCCAC	60.078	63.158	0.00	0.00	0.00	4.02
4890	5179	0.915872	ATGGAGGGTGCATGAGTCCA	60.916	55.000	11.18	11.18	41.50	4.02
4891	5180	1.131638	TATGGAGGGTGCATGAGTCC	58.868	55.000	0.00	0.00	29.08	3.85
4892	5181	1.486310	TGTATGGAGGGTGCATGAGTC	59.514	52.381	0.00	0.00	29.08	3.36
4894	5183	1.487976	AGTGTATGGAGGGTGCATGAG	59.512	52.381	0.00	0.00	29.08	2.90
4895	5184	1.486310	GAGTGTATGGAGGGTGCATGA	59.514	52.381	0.00	0.00	29.08	3.07
4896	5185	1.487976	AGAGTGTATGGAGGGTGCATG	59.512	52.381	0.00	0.00	29.08	4.06
4897	5186	1.885049	AGAGTGTATGGAGGGTGCAT	58.115	50.000	0.00	0.00	31.80	3.96
4899	5188	1.413077	GGTAGAGTGTATGGAGGGTGC	59.587	57.143	0.00	0.00	0.00	5.01
4900	5189	2.747177	TGGTAGAGTGTATGGAGGGTG	58.253	52.381	0.00	0.00	0.00	4.61
4901	5190	3.484953	TTGGTAGAGTGTATGGAGGGT	57.515	47.619	0.00	0.00	0.00	4.34
4902	5191	3.517901	TGTTTGGTAGAGTGTATGGAGGG	59.482	47.826	0.00	0.00	0.00	4.30
4903	5192	4.504858	GTGTTTGGTAGAGTGTATGGAGG	58.495	47.826	0.00	0.00	0.00	4.30
4904	5193	4.504858	GGTGTTTGGTAGAGTGTATGGAG	58.495	47.826	0.00	0.00	0.00	3.86
4905	5194	3.262405	GGGTGTTTGGTAGAGTGTATGGA	59.738	47.826	0.00	0.00	0.00	3.41
4906	5195	3.008594	TGGGTGTTTGGTAGAGTGTATGG	59.991	47.826	0.00	0.00	0.00	2.74
4907	5196	4.280436	TGGGTGTTTGGTAGAGTGTATG	57.720	45.455	0.00	0.00	0.00	2.39
4908	5197	4.986054	TTGGGTGTTTGGTAGAGTGTAT	57.014	40.909	0.00	0.00	0.00	2.29
4910	5199	3.655615	TTTGGGTGTTTGGTAGAGTGT	57.344	42.857	0.00	0.00	0.00	3.55
4911	5200	3.951680	ACTTTTGGGTGTTTGGTAGAGTG	59.048	43.478	0.00	0.00	0.00	3.51
4914	5203	3.292460	CCACTTTTGGGTGTTTGGTAGA	58.708	45.455	0.00	0.00	39.57	2.59
4915	5204	3.726291	CCACTTTTGGGTGTTTGGTAG	57.274	47.619	0.00	0.00	39.57	3.18
4926	5215	0.893727	CCTTCCCGACCCACTTTTGG	60.894	60.000	0.00	0.00	43.50	3.28
4927	5216	0.893727	CCCTTCCCGACCCACTTTTG	60.894	60.000	0.00	0.00	0.00	2.44
4928	5217	1.063654	TCCCTTCCCGACCCACTTTT	61.064	55.000	0.00	0.00	0.00	2.27
4929	5218	1.063654	TTCCCTTCCCGACCCACTTT	61.064	55.000	0.00	0.00	0.00	2.66
4930	5219	1.462627	TTCCCTTCCCGACCCACTT	60.463	57.895	0.00	0.00	0.00	3.16
4931	5220	2.206036	TTCCCTTCCCGACCCACT	59.794	61.111	0.00	0.00	0.00	4.00
4933	5222	1.916777	GAGTTCCCTTCCCGACCCA	60.917	63.158	0.00	0.00	0.00	4.51
4934	5223	1.199425	AAGAGTTCCCTTCCCGACCC	61.199	60.000	0.00	0.00	0.00	4.46
4935	5224	0.036294	CAAGAGTTCCCTTCCCGACC	60.036	60.000	0.00	0.00	0.00	4.79
4949	7096	1.751927	GGGTGCATGAGCCCAAGAG	60.752	63.158	17.12	0.00	44.23	2.85
4950	7097	2.356278	GGGTGCATGAGCCCAAGA	59.644	61.111	17.12	0.00	44.23	3.02
4954	7101	2.252072	TACGAAGGGTGCATGAGCCC	62.252	60.000	14.97	14.97	44.14	5.19
4955	7102	0.811616	CTACGAAGGGTGCATGAGCC	60.812	60.000	0.00	0.68	43.30	4.70
4956	7103	0.175760	TCTACGAAGGGTGCATGAGC	59.824	55.000	0.00	0.00	42.57	4.26
4957	7104	1.471676	GGTCTACGAAGGGTGCATGAG	60.472	57.143	0.00	0.00	0.00	2.90
4959	7106	0.462047	GGGTCTACGAAGGGTGCATG	60.462	60.000	0.00	0.00	0.00	4.06
4962	7109	0.459078	GTAGGGTCTACGAAGGGTGC	59.541	60.000	0.00	0.00	0.00	5.01
4963	7110	1.109609	GGTAGGGTCTACGAAGGGTG	58.890	60.000	0.00	0.00	0.00	4.61
4964	7111	0.706433	TGGTAGGGTCTACGAAGGGT	59.294	55.000	0.00	0.00	0.00	4.34
4965	7112	1.856629	TTGGTAGGGTCTACGAAGGG	58.143	55.000	0.00	0.00	0.00	3.95
4966	7113	2.564062	TGTTTGGTAGGGTCTACGAAGG	59.436	50.000	0.00	0.00	0.00	3.46
4967	7114	3.006110	TGTGTTTGGTAGGGTCTACGAAG	59.994	47.826	0.00	0.00	0.00	3.79
4968	7115	2.964464	TGTGTTTGGTAGGGTCTACGAA	59.036	45.455	0.00	0.00	0.00	3.85
4970	7117	2.611224	GGTGTGTTTGGTAGGGTCTACG	60.611	54.545	0.00	0.00	0.00	3.51
4971	7118	2.289882	GGGTGTGTTTGGTAGGGTCTAC	60.290	54.545	0.00	0.00	0.00	2.59
4973	7120	0.769247	GGGTGTGTTTGGTAGGGTCT	59.231	55.000	0.00	0.00	0.00	3.85
4975	7122	1.982958	CTAGGGTGTGTTTGGTAGGGT	59.017	52.381	0.00	0.00	0.00	4.34
4979	7126	5.570205	TTTCATCTAGGGTGTGTTTGGTA	57.430	39.130	0.00	0.00	0.00	3.25
4981	7128	6.039717	CCATATTTCATCTAGGGTGTGTTTGG	59.960	42.308	0.00	0.00	0.00	3.28
4982	7129	6.603201	ACCATATTTCATCTAGGGTGTGTTTG	59.397	38.462	0.00	0.00	32.33	2.93
4983	7130	6.603201	CACCATATTTCATCTAGGGTGTGTTT	59.397	38.462	6.10	0.00	42.97	2.83
4984	7131	6.122277	CACCATATTTCATCTAGGGTGTGTT	58.878	40.000	6.10	0.00	42.97	3.32
4985	7132	5.684704	CACCATATTTCATCTAGGGTGTGT	58.315	41.667	6.10	0.00	42.97	3.72
4990	7137	8.469309	AATCAAACACCATATTTCATCTAGGG	57.531	34.615	0.00	0.00	0.00	3.53
4991	7138	9.956720	GAAATCAAACACCATATTTCATCTAGG	57.043	33.333	0.00	0.00	37.94	3.02
5000	7147	8.902806	ACGTGATATGAAATCAAACACCATATT	58.097	29.630	0.00	0.00	32.46	1.28
5006	7199	7.463544	TGATCACGTGATATGAAATCAAACAC	58.536	34.615	30.04	13.14	34.37	3.32
5420	7613	1.497286	ACCTGTAAAGTTGCCTCCCAA	59.503	47.619	0.00	0.00	0.00	4.12
5458	7651	7.121759	GGGATCAAAGAGAGTGAATTCAATGAA	59.878	37.037	14.00	0.00	0.00	2.57
5481	7674	3.993658	ATCAGGGTACTACATCAGGGA	57.006	47.619	0.00	0.00	0.00	4.20
5488	7681	7.643569	TCATTTTACGTATCAGGGTACTACA	57.356	36.000	0.00	0.00	0.00	2.74
5713	7906	0.535553	AACCCAAACGCATACACGGT	60.536	50.000	0.00	0.00	37.37	4.83
5813	8006	4.080863	GGTGGTGAGATTCAGAATACCAGT	60.081	45.833	14.33	0.00	38.73	4.00
5870	8063	6.183360	GGAGTAGGTGAGGAAAAGGAAGATAG	60.183	46.154	0.00	0.00	0.00	2.08
5930	8123	6.828785	AGTTCTTAAGGACAAACAAGTGTGAT	59.171	34.615	16.38	0.00	0.00	3.06
6128	8321	4.520492	ACATCTTACTTGCAGTTGAAAGGG	59.480	41.667	4.92	0.00	34.93	3.95
6735	8958	1.067354	CAGCAATTTGGCCCTCTGTTC	60.067	52.381	0.00	0.00	0.00	3.18
6763	9014	1.702401	TGGGTAAGTTGCAGGACATCA	59.298	47.619	0.00	0.00	0.00	3.07
6804	9055	1.636769	GGGCTGGAAGGAGTAAGGGG	61.637	65.000	0.00	0.00	0.00	4.79
6833	9084	3.054065	AGGATAGGAAACTTTGGCAGAGG	60.054	47.826	10.06	0.00	43.67	3.69
6874	9139	4.775253	TGCCCCCTTCAACCTAAAAATAAG	59.225	41.667	0.00	0.00	0.00	1.73
7057	9322	3.525268	TCGCTGAGCAATGTATGAGAA	57.475	42.857	4.88	0.00	0.00	2.87
7096	9361	2.001803	CCCATCCCCAGCTTCTGAA	58.998	57.895	0.00	0.00	32.44	3.02
7105	9370	1.951923	TACTACTCCGCCCATCCCCA	61.952	60.000	0.00	0.00	0.00	4.96
7433	9699	5.517770	GCATGCCTACTGAAACATTTGAATC	59.482	40.000	6.36	0.00	0.00	2.52
7490	9756	0.037447	GGCAGAGGGAAAGCTTGACT	59.963	55.000	0.00	0.00	0.00	3.41
7574	9840	2.564062	CAATGAGGAACAGCCAATGGTT	59.436	45.455	0.00	0.00	40.02	3.67
7644	9910	7.233348	AGGCAAATATTTTACTATCATGTGGGG	59.767	37.037	0.00	0.00	0.00	4.96
7738	10004	3.386078	AGATCAGTATCCGTTGTCAGCAT	59.614	43.478	0.00	0.00	31.98	3.79
7844	10118	8.635765	AAATCAAACAGCTAATAGTTGAGGAA	57.364	30.769	11.07	0.00	30.50	3.36
7989	10263	5.136828	TGAGCCCAATTTTAACAGAAGACA	58.863	37.500	0.00	0.00	0.00	3.41
8023	10297	2.666190	GCGCCACTGAGAGCAACA	60.666	61.111	0.00	0.00	0.00	3.33
8081	10355	9.396022	GGTTTAGGAAAGTATTGATTCATCTGA	57.604	33.333	0.00	0.00	0.00	3.27
8111	10385	2.756840	TGGATGTCAGCTGTTGAGAG	57.243	50.000	14.67	0.00	36.21	3.20
8314	10588	8.961295	ATAAACGCTTATGTTTATACGTTTCG	57.039	30.769	13.69	0.00	46.99	3.46
8504	10778	5.702865	CACAGGATCAAATAATAATGGGCG	58.297	41.667	0.00	0.00	0.00	6.13
8631	10905	4.966787	CCCCCACACACCAACCCG	62.967	72.222	0.00	0.00	0.00	5.28
8647	10921	1.369625	CCAGCAACCATAACTCGACC	58.630	55.000	0.00	0.00	0.00	4.79
8648	10922	0.727398	GCCAGCAACCATAACTCGAC	59.273	55.000	0.00	0.00	0.00	4.20
8649	10923	0.613260	AGCCAGCAACCATAACTCGA	59.387	50.000	0.00	0.00	0.00	4.04
8650	10924	0.729116	CAGCCAGCAACCATAACTCG	59.271	55.000	0.00	0.00	0.00	4.18
8651	10925	0.453390	GCAGCCAGCAACCATAACTC	59.547	55.000	0.00	0.00	44.79	3.01
8809	11083	5.010012	GGGTATCATTGCCTAATCCAAACAG	59.990	44.000	0.00	0.00	0.00	3.16
8831	11105	6.715264	AGTTGTATCTGTTCTTAAAGGTTGGG	59.285	38.462	0.00	0.00	0.00	4.12
8845	11119	5.412594	CACATGGCTGTAAAGTTGTATCTGT	59.587	40.000	0.00	0.00	33.14	3.41
8916	11190	7.291651	CCCTTAGTATCTAACCCCAGTTGATAA	59.708	40.741	0.00	0.00	36.68	1.75
8940	11214	3.359523	GTGTTTCCGAACGGGCCC	61.360	66.667	13.57	13.57	38.65	5.80
8941	11215	2.281276	AGTGTTTCCGAACGGGCC	60.281	61.111	13.29	0.00	38.65	5.80
8942	11216	2.322830	GGAGTGTTTCCGAACGGGC	61.323	63.158	13.29	5.18	38.65	6.13
8943	11217	3.961729	GGAGTGTTTCCGAACGGG	58.038	61.111	13.29	0.00	38.65	5.28
8950	11224	2.046217	GGGAGCCGGAGTGTTTCC	60.046	66.667	5.05	1.02	43.04	3.13
8951	11225	1.376037	CTGGGAGCCGGAGTGTTTC	60.376	63.158	5.05	0.00	29.82	2.78
8952	11226	2.750350	CTGGGAGCCGGAGTGTTT	59.250	61.111	5.05	0.00	29.82	2.83
8953	11227	4.021925	GCTGGGAGCCGGAGTGTT	62.022	66.667	5.05	0.00	34.48	3.32
8955	11229	4.154347	GAGCTGGGAGCCGGAGTG	62.154	72.222	5.05	0.00	43.77	3.51
8970	11244	2.507992	CACTTCAGCTCCGCGGAG	60.508	66.667	43.74	43.74	44.56	4.63
8971	11245	4.069232	CCACTTCAGCTCCGCGGA	62.069	66.667	29.03	29.03	0.00	5.54
8972	11246	4.379243	ACCACTTCAGCTCCGCGG	62.379	66.667	22.12	22.12	0.00	6.46
8973	11247	3.114616	CACCACTTCAGCTCCGCG	61.115	66.667	0.00	0.00	0.00	6.46
8974	11248	2.743928	CCACCACTTCAGCTCCGC	60.744	66.667	0.00	0.00	0.00	5.54
8975	11249	1.079543	CTCCACCACTTCAGCTCCG	60.080	63.158	0.00	0.00	0.00	4.63
8976	11250	1.376553	GCTCCACCACTTCAGCTCC	60.377	63.158	0.00	0.00	0.00	4.70
8977	11251	1.739562	CGCTCCACCACTTCAGCTC	60.740	63.158	0.00	0.00	0.00	4.09
8978	11252	2.345244	CGCTCCACCACTTCAGCT	59.655	61.111	0.00	0.00	0.00	4.24
8979	11253	2.743928	CCGCTCCACCACTTCAGC	60.744	66.667	0.00	0.00	0.00	4.26
8980	11254	1.079543	CTCCGCTCCACCACTTCAG	60.080	63.158	0.00	0.00	0.00	3.02
8981	11255	3.059982	CTCCGCTCCACCACTTCA	58.940	61.111	0.00	0.00	0.00	3.02
8982	11256	2.435059	GCTCCGCTCCACCACTTC	60.435	66.667	0.00	0.00	0.00	3.01
8983	11257	4.379243	CGCTCCGCTCCACCACTT	62.379	66.667	0.00	0.00	0.00	3.16
8999	11273	1.261619	GGAAATATGAACTGCGCTCCG	59.738	52.381	9.73	0.00	0.00	4.63
9000	11274	1.261619	CGGAAATATGAACTGCGCTCC	59.738	52.381	9.73	1.40	0.00	4.70
9001	11275	1.261619	CCGGAAATATGAACTGCGCTC	59.738	52.381	9.73	0.00	0.00	5.03
9002	11276	1.134521	TCCGGAAATATGAACTGCGCT	60.135	47.619	9.73	0.00	0.00	5.92
9003	11277	1.261619	CTCCGGAAATATGAACTGCGC	59.738	52.381	5.23	0.00	0.00	6.09
9004	11278	1.261619	GCTCCGGAAATATGAACTGCG	59.738	52.381	5.23	0.00	0.00	5.18
9005	11279	2.289002	CAGCTCCGGAAATATGAACTGC	59.711	50.000	5.23	0.48	0.00	4.40
9006	11280	2.289002	GCAGCTCCGGAAATATGAACTG	59.711	50.000	5.23	4.51	0.00	3.16
9007	11281	2.171448	AGCAGCTCCGGAAATATGAACT	59.829	45.455	5.23	0.00	0.00	3.01
9008	11282	2.565841	AGCAGCTCCGGAAATATGAAC	58.434	47.619	5.23	0.00	0.00	3.18
9009	11283	4.623932	ATAGCAGCTCCGGAAATATGAA	57.376	40.909	5.23	0.00	0.00	2.57
9010	11284	4.284490	AGAATAGCAGCTCCGGAAATATGA	59.716	41.667	5.23	0.00	0.00	2.15
9011	11285	4.391216	CAGAATAGCAGCTCCGGAAATATG	59.609	45.833	5.23	2.93	0.00	1.78
9012	11286	4.040952	ACAGAATAGCAGCTCCGGAAATAT	59.959	41.667	5.23	0.00	0.00	1.28
9013	11287	3.388024	ACAGAATAGCAGCTCCGGAAATA	59.612	43.478	5.23	0.00	0.00	1.40
9014	11288	2.171448	ACAGAATAGCAGCTCCGGAAAT	59.829	45.455	5.23	0.00	0.00	2.17
9015	11289	1.555075	ACAGAATAGCAGCTCCGGAAA	59.445	47.619	5.23	0.00	0.00	3.13
9016	11290	1.195115	ACAGAATAGCAGCTCCGGAA	58.805	50.000	5.23	0.00	0.00	4.30
9017	11291	1.134699	CAACAGAATAGCAGCTCCGGA	60.135	52.381	2.93	2.93	0.00	5.14
9018	11292	1.293924	CAACAGAATAGCAGCTCCGG	58.706	55.000	0.00	0.00	0.00	5.14
9019	11293	0.654683	GCAACAGAATAGCAGCTCCG	59.345	55.000	0.00	0.00	0.00	4.63
9020	11294	1.939255	GAGCAACAGAATAGCAGCTCC	59.061	52.381	0.00	0.00	41.83	4.70
9021	11295	1.939255	GGAGCAACAGAATAGCAGCTC	59.061	52.381	0.00	0.00	45.65	4.09
9022	11296	1.741732	CGGAGCAACAGAATAGCAGCT	60.742	52.381	0.00	0.00	34.61	4.24
9023	11297	0.654683	CGGAGCAACAGAATAGCAGC	59.345	55.000	0.00	0.00	0.00	5.25
9042	11316	2.099062	CGCTCAACGCTGGAATGC	59.901	61.111	0.00	0.00	36.13	3.56
9043	11317	1.699656	CTCCGCTCAACGCTGGAATG	61.700	60.000	0.00	0.00	39.56	2.67
9044	11318	1.448540	CTCCGCTCAACGCTGGAAT	60.449	57.895	0.00	0.00	39.56	3.01
9045	11319	2.048222	CTCCGCTCAACGCTGGAA	60.048	61.111	0.00	0.00	39.56	3.53
9046	11320	4.742201	GCTCCGCTCAACGCTGGA	62.742	66.667	0.00	0.00	41.76	3.86
9051	11325	2.921538	CTACTCCGCTCCGCTCAACG	62.922	65.000	0.00	0.00	43.15	4.10
9052	11326	1.226717	CTACTCCGCTCCGCTCAAC	60.227	63.158	0.00	0.00	0.00	3.18
9053	11327	3.064987	GCTACTCCGCTCCGCTCAA	62.065	63.158	0.00	0.00	0.00	3.02
9054	11328	3.518998	GCTACTCCGCTCCGCTCA	61.519	66.667	0.00	0.00	0.00	4.26
9055	11329	3.213402	AGCTACTCCGCTCCGCTC	61.213	66.667	0.00	0.00	34.57	5.03
9056	11330	3.522731	CAGCTACTCCGCTCCGCT	61.523	66.667	0.00	0.00	38.41	5.52
9057	11331	4.577246	CCAGCTACTCCGCTCCGC	62.577	72.222	0.00	0.00	38.41	5.54
9058	11332	2.829003	TCCAGCTACTCCGCTCCG	60.829	66.667	0.00	0.00	38.41	4.63
9059	11333	3.124686	CTCCAGCTACTCCGCTCC	58.875	66.667	0.00	0.00	38.41	4.70
9060	11334	2.415426	GCTCCAGCTACTCCGCTC	59.585	66.667	0.00	0.00	38.41	5.03

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.