Multiple sequence alignment - TraesCS5B01G116000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G116000 chr5B 100.000 2609 0 0 1 2609 196478405 196475797 0.000000e+00 4819.0
1 TraesCS5B01G116000 chr5B 92.063 126 7 3 1 125 215073575 215073452 9.600000e-40 174.0
2 TraesCS5B01G116000 chr4A 94.756 2155 105 5 461 2609 713528803 713526651 0.000000e+00 3347.0
3 TraesCS5B01G116000 chr4A 91.525 885 65 4 461 1335 634349924 634350808 0.000000e+00 1210.0
4 TraesCS5B01G116000 chr1B 90.884 2172 172 10 461 2609 143117411 143115243 0.000000e+00 2891.0
5 TraesCS5B01G116000 chr1B 84.770 1740 228 22 461 2190 279183083 279184795 0.000000e+00 1711.0
6 TraesCS5B01G116000 chr7D 91.646 2047 148 10 461 2486 2193711 2191667 0.000000e+00 2811.0
7 TraesCS5B01G116000 chr1A 90.983 2085 169 11 531 2609 549170307 549168236 0.000000e+00 2791.0
8 TraesCS5B01G116000 chrUn 85.794 2154 290 15 461 2608 77589858 77592001 0.000000e+00 2268.0
9 TraesCS5B01G116000 chr3B 85.690 1761 225 15 851 2608 61571099 61569363 0.000000e+00 1831.0
10 TraesCS5B01G116000 chr3B 95.621 845 31 3 460 1298 232664449 232663605 0.000000e+00 1351.0
11 TraesCS5B01G116000 chr3B 77.481 1945 371 52 696 2609 617993845 617991937 0.000000e+00 1103.0
12 TraesCS5B01G116000 chr2A 89.129 1205 105 11 1409 2609 607448296 607447114 0.000000e+00 1476.0
13 TraesCS5B01G116000 chr2A 88.491 921 99 6 1693 2609 291703372 291702455 0.000000e+00 1107.0
14 TraesCS5B01G116000 chr2A 87.468 391 43 5 460 847 291703773 291703386 1.840000e-121 446.0
15 TraesCS5B01G116000 chr6B 86.090 1064 137 10 460 1518 150778274 150779331 0.000000e+00 1134.0
16 TraesCS5B01G116000 chr6B 84.658 1095 164 2 1514 2608 150781061 150782151 0.000000e+00 1088.0
17 TraesCS5B01G116000 chr6B 92.063 126 7 3 1 125 265773645 265773768 9.600000e-40 174.0
18 TraesCS5B01G116000 chr5A 92.763 152 10 1 127 278 230078715 230078565 4.370000e-53 219.0
19 TraesCS5B01G116000 chr5A 89.157 166 7 5 310 465 230074401 230074237 2.050000e-46 196.0
20 TraesCS5B01G116000 chr5A 96.491 57 2 0 260 316 230075721 230075665 7.690000e-16 95.3
21 TraesCS5B01G116000 chr5D 92.857 126 3 6 1 125 192316706 192316586 7.420000e-41 178.0
22 TraesCS5B01G116000 chr5D 92.063 126 7 3 1 125 384624191 384624068 9.600000e-40 174.0
23 TraesCS5B01G116000 chr7A 92.063 126 7 3 1 125 258349593 258349716 9.600000e-40 174.0
24 TraesCS5B01G116000 chr6D 92.063 126 7 3 1 125 329479495 329479618 9.600000e-40 174.0
25 TraesCS5B01G116000 chr4D 92.063 126 7 3 1 125 307954890 307954767 9.600000e-40 174.0
26 TraesCS5B01G116000 chr4B 92.000 125 9 1 1 125 453783815 453783938 9.600000e-40 174.0
27 TraesCS5B01G116000 chr1D 92.000 125 8 2 1 125 438356195 438356073 9.600000e-40 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G116000 chr5B 196475797 196478405 2608 True 4819.0 4819 100.0000 1 2609 1 chr5B.!!$R1 2608
1 TraesCS5B01G116000 chr4A 713526651 713528803 2152 True 3347.0 3347 94.7560 461 2609 1 chr4A.!!$R1 2148
2 TraesCS5B01G116000 chr4A 634349924 634350808 884 False 1210.0 1210 91.5250 461 1335 1 chr4A.!!$F1 874
3 TraesCS5B01G116000 chr1B 143115243 143117411 2168 True 2891.0 2891 90.8840 461 2609 1 chr1B.!!$R1 2148
4 TraesCS5B01G116000 chr1B 279183083 279184795 1712 False 1711.0 1711 84.7700 461 2190 1 chr1B.!!$F1 1729
5 TraesCS5B01G116000 chr7D 2191667 2193711 2044 True 2811.0 2811 91.6460 461 2486 1 chr7D.!!$R1 2025
6 TraesCS5B01G116000 chr1A 549168236 549170307 2071 True 2791.0 2791 90.9830 531 2609 1 chr1A.!!$R1 2078
7 TraesCS5B01G116000 chrUn 77589858 77592001 2143 False 2268.0 2268 85.7940 461 2608 1 chrUn.!!$F1 2147
8 TraesCS5B01G116000 chr3B 61569363 61571099 1736 True 1831.0 1831 85.6900 851 2608 1 chr3B.!!$R1 1757
9 TraesCS5B01G116000 chr3B 232663605 232664449 844 True 1351.0 1351 95.6210 460 1298 1 chr3B.!!$R2 838
10 TraesCS5B01G116000 chr3B 617991937 617993845 1908 True 1103.0 1103 77.4810 696 2609 1 chr3B.!!$R3 1913
11 TraesCS5B01G116000 chr2A 607447114 607448296 1182 True 1476.0 1476 89.1290 1409 2609 1 chr2A.!!$R1 1200
12 TraesCS5B01G116000 chr2A 291702455 291703773 1318 True 776.5 1107 87.9795 460 2609 2 chr2A.!!$R2 2149
13 TraesCS5B01G116000 chr6B 150778274 150782151 3877 False 1111.0 1134 85.3740 460 2608 2 chr6B.!!$F2 2148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.033366 GCATGGCAACCCGAAAAGTT 59.967 50.0 0.0 0.0 0.00 2.66 F
1365 1388 0.321564 CCACGCAGTTCCTTCATGGA 60.322 55.0 0.0 0.0 41.61 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 3311 0.322726 CACCACCATGATCACCAGCA 60.323 55.0 0.0 0.0 0.0 4.41 R
2325 4138 0.178973 GGTGCCAACAAAGGGGTAGT 60.179 55.0 0.0 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.936372 TGGAACACGAAACACCAAAAA 57.064 38.095 0.00 0.00 0.00 1.94
80 81 4.457834 TGGAACACGAAACACCAAAAAT 57.542 36.364 0.00 0.00 0.00 1.82
81 82 5.578005 TGGAACACGAAACACCAAAAATA 57.422 34.783 0.00 0.00 0.00 1.40
82 83 6.150396 TGGAACACGAAACACCAAAAATAT 57.850 33.333 0.00 0.00 0.00 1.28
83 84 7.273320 TGGAACACGAAACACCAAAAATATA 57.727 32.000 0.00 0.00 0.00 0.86
84 85 7.887381 TGGAACACGAAACACCAAAAATATAT 58.113 30.769 0.00 0.00 0.00 0.86
85 86 8.361139 TGGAACACGAAACACCAAAAATATATT 58.639 29.630 0.00 0.00 0.00 1.28
86 87 9.843334 GGAACACGAAACACCAAAAATATATTA 57.157 29.630 0.00 0.00 0.00 0.98
107 108 6.599356 TTAGTTGTACTTGCTACTCATGGA 57.401 37.500 0.00 0.00 0.00 3.41
108 109 5.078411 AGTTGTACTTGCTACTCATGGAG 57.922 43.478 0.00 0.00 35.52 3.86
109 110 4.772624 AGTTGTACTTGCTACTCATGGAGA 59.227 41.667 0.00 0.00 33.32 3.71
110 111 5.423610 AGTTGTACTTGCTACTCATGGAGAT 59.576 40.000 0.00 0.00 33.32 2.75
111 112 5.268118 TGTACTTGCTACTCATGGAGATG 57.732 43.478 0.00 0.00 33.32 2.90
112 113 3.834489 ACTTGCTACTCATGGAGATGG 57.166 47.619 0.00 0.00 33.32 3.51
113 114 2.437281 ACTTGCTACTCATGGAGATGGG 59.563 50.000 0.00 0.00 35.97 4.00
114 115 1.427809 TGCTACTCATGGAGATGGGG 58.572 55.000 0.00 0.00 33.86 4.96
115 116 1.062198 TGCTACTCATGGAGATGGGGA 60.062 52.381 0.00 0.00 33.86 4.81
116 117 2.050144 GCTACTCATGGAGATGGGGAA 58.950 52.381 0.00 0.00 33.86 3.97
117 118 2.224402 GCTACTCATGGAGATGGGGAAC 60.224 54.545 0.00 0.00 33.86 3.62
118 119 1.216990 ACTCATGGAGATGGGGAACC 58.783 55.000 0.00 0.00 41.57 3.62
119 120 1.274650 ACTCATGGAGATGGGGAACCT 60.275 52.381 0.00 0.00 41.68 3.50
120 121 3.228805 ACTCATGGAGATGGGGAACCTC 61.229 54.545 0.00 0.00 41.68 3.85
133 134 3.823281 GGAACCTCCTAAGCTTCCTAC 57.177 52.381 0.00 0.00 32.53 3.18
134 135 3.105283 GGAACCTCCTAAGCTTCCTACA 58.895 50.000 0.00 0.00 32.53 2.74
135 136 3.133183 GGAACCTCCTAAGCTTCCTACAG 59.867 52.174 0.00 0.00 32.53 2.74
136 137 2.112190 ACCTCCTAAGCTTCCTACAGC 58.888 52.381 0.00 0.00 40.44 4.40
137 138 1.067821 CCTCCTAAGCTTCCTACAGCG 59.932 57.143 0.00 0.00 45.24 5.18
138 139 1.067821 CTCCTAAGCTTCCTACAGCGG 59.932 57.143 0.00 0.00 45.24 5.52
139 140 0.824759 CCTAAGCTTCCTACAGCGGT 59.175 55.000 0.00 0.00 45.24 5.68
140 141 1.471676 CCTAAGCTTCCTACAGCGGTG 60.472 57.143 14.13 14.13 45.24 4.94
141 142 0.535335 TAAGCTTCCTACAGCGGTGG 59.465 55.000 20.20 0.65 45.24 4.61
142 143 2.804828 AAGCTTCCTACAGCGGTGGC 62.805 60.000 20.20 11.21 45.24 5.01
152 153 4.692475 GCGGTGGCTACGGTGGTT 62.692 66.667 9.46 0.00 35.83 3.67
153 154 2.740826 CGGTGGCTACGGTGGTTG 60.741 66.667 0.00 0.00 0.00 3.77
154 155 2.359478 GGTGGCTACGGTGGTTGG 60.359 66.667 0.00 0.00 0.00 3.77
155 156 2.745037 GTGGCTACGGTGGTTGGA 59.255 61.111 0.00 0.00 0.00 3.53
156 157 1.375523 GTGGCTACGGTGGTTGGAG 60.376 63.158 0.00 0.00 0.00 3.86
157 158 1.534476 TGGCTACGGTGGTTGGAGA 60.534 57.895 0.00 0.00 0.00 3.71
158 159 1.218316 GGCTACGGTGGTTGGAGAG 59.782 63.158 0.00 0.00 0.00 3.20
159 160 1.542187 GGCTACGGTGGTTGGAGAGT 61.542 60.000 0.00 0.00 0.00 3.24
160 161 0.320697 GCTACGGTGGTTGGAGAGTT 59.679 55.000 0.00 0.00 0.00 3.01
161 162 1.939838 GCTACGGTGGTTGGAGAGTTG 60.940 57.143 0.00 0.00 0.00 3.16
162 163 1.616865 CTACGGTGGTTGGAGAGTTGA 59.383 52.381 0.00 0.00 0.00 3.18
163 164 1.056660 ACGGTGGTTGGAGAGTTGAT 58.943 50.000 0.00 0.00 0.00 2.57
164 165 1.420138 ACGGTGGTTGGAGAGTTGATT 59.580 47.619 0.00 0.00 0.00 2.57
165 166 1.806542 CGGTGGTTGGAGAGTTGATTG 59.193 52.381 0.00 0.00 0.00 2.67
166 167 2.549992 CGGTGGTTGGAGAGTTGATTGA 60.550 50.000 0.00 0.00 0.00 2.57
167 168 2.814336 GGTGGTTGGAGAGTTGATTGAC 59.186 50.000 0.00 0.00 0.00 3.18
168 169 2.814336 GTGGTTGGAGAGTTGATTGACC 59.186 50.000 0.00 0.00 0.00 4.02
169 170 2.441375 TGGTTGGAGAGTTGATTGACCA 59.559 45.455 0.00 0.00 33.84 4.02
170 171 3.074390 TGGTTGGAGAGTTGATTGACCAT 59.926 43.478 0.00 0.00 31.47 3.55
171 172 3.441572 GGTTGGAGAGTTGATTGACCATG 59.558 47.826 0.00 0.00 0.00 3.66
172 173 4.074970 GTTGGAGAGTTGATTGACCATGT 58.925 43.478 0.00 0.00 0.00 3.21
173 174 4.371624 TGGAGAGTTGATTGACCATGTT 57.628 40.909 0.00 0.00 0.00 2.71
174 175 5.497464 TGGAGAGTTGATTGACCATGTTA 57.503 39.130 0.00 0.00 0.00 2.41
175 176 5.875224 TGGAGAGTTGATTGACCATGTTAA 58.125 37.500 0.00 0.00 0.00 2.01
176 177 6.484288 TGGAGAGTTGATTGACCATGTTAAT 58.516 36.000 0.00 0.00 0.00 1.40
177 178 6.375174 TGGAGAGTTGATTGACCATGTTAATG 59.625 38.462 0.00 0.00 0.00 1.90
178 179 6.199937 AGAGTTGATTGACCATGTTAATGC 57.800 37.500 0.00 0.00 31.93 3.56
179 180 5.711506 AGAGTTGATTGACCATGTTAATGCA 59.288 36.000 0.00 0.00 31.93 3.96
180 181 5.957798 AGTTGATTGACCATGTTAATGCAG 58.042 37.500 0.00 0.00 31.93 4.41
181 182 5.711506 AGTTGATTGACCATGTTAATGCAGA 59.288 36.000 0.00 0.00 31.93 4.26
182 183 5.823209 TGATTGACCATGTTAATGCAGAG 57.177 39.130 0.00 0.00 31.93 3.35
183 184 5.255687 TGATTGACCATGTTAATGCAGAGT 58.744 37.500 0.00 0.00 31.93 3.24
184 185 5.124297 TGATTGACCATGTTAATGCAGAGTG 59.876 40.000 0.00 0.00 31.93 3.51
185 186 3.346315 TGACCATGTTAATGCAGAGTGG 58.654 45.455 0.00 0.00 31.93 4.00
186 187 2.684881 GACCATGTTAATGCAGAGTGGG 59.315 50.000 0.00 0.00 31.93 4.61
187 188 2.308570 ACCATGTTAATGCAGAGTGGGA 59.691 45.455 0.00 0.00 31.93 4.37
188 189 3.053395 ACCATGTTAATGCAGAGTGGGAT 60.053 43.478 0.00 0.00 31.93 3.85
189 190 4.165950 ACCATGTTAATGCAGAGTGGGATA 59.834 41.667 0.00 0.00 31.93 2.59
190 191 4.516698 CCATGTTAATGCAGAGTGGGATAC 59.483 45.833 0.00 0.00 31.93 2.24
191 192 4.835284 TGTTAATGCAGAGTGGGATACA 57.165 40.909 0.00 0.00 39.74 2.29
192 193 4.769688 TGTTAATGCAGAGTGGGATACAG 58.230 43.478 0.00 0.00 39.74 2.74
193 194 4.225042 TGTTAATGCAGAGTGGGATACAGT 59.775 41.667 0.00 0.00 39.74 3.55
194 195 2.996249 ATGCAGAGTGGGATACAGTG 57.004 50.000 0.00 0.00 39.74 3.66
195 196 0.904649 TGCAGAGTGGGATACAGTGG 59.095 55.000 0.00 0.00 39.74 4.00
196 197 0.462759 GCAGAGTGGGATACAGTGGC 60.463 60.000 0.00 0.00 39.74 5.01
197 198 0.904649 CAGAGTGGGATACAGTGGCA 59.095 55.000 0.00 0.00 39.74 4.92
198 199 0.905357 AGAGTGGGATACAGTGGCAC 59.095 55.000 10.29 10.29 39.74 5.01
199 200 0.905357 GAGTGGGATACAGTGGCACT 59.095 55.000 15.88 15.88 36.89 4.40
200 201 1.279271 GAGTGGGATACAGTGGCACTT 59.721 52.381 19.43 12.08 34.76 3.16
201 202 1.279271 AGTGGGATACAGTGGCACTTC 59.721 52.381 19.43 13.36 31.16 3.01
202 203 1.003118 GTGGGATACAGTGGCACTTCA 59.997 52.381 19.43 9.02 39.74 3.02
203 204 1.278985 TGGGATACAGTGGCACTTCAG 59.721 52.381 19.43 9.81 39.74 3.02
204 205 1.555075 GGGATACAGTGGCACTTCAGA 59.445 52.381 19.43 3.60 39.74 3.27
205 206 2.027192 GGGATACAGTGGCACTTCAGAA 60.027 50.000 19.43 1.91 39.74 3.02
206 207 3.003480 GGATACAGTGGCACTTCAGAAC 58.997 50.000 19.43 7.50 0.00 3.01
207 208 3.557054 GGATACAGTGGCACTTCAGAACA 60.557 47.826 19.43 0.00 0.00 3.18
208 209 2.418368 ACAGTGGCACTTCAGAACAA 57.582 45.000 19.43 0.00 0.00 2.83
209 210 2.936202 ACAGTGGCACTTCAGAACAAT 58.064 42.857 19.43 0.00 0.00 2.71
210 211 3.290710 ACAGTGGCACTTCAGAACAATT 58.709 40.909 19.43 0.00 0.00 2.32
211 212 3.701040 ACAGTGGCACTTCAGAACAATTT 59.299 39.130 19.43 0.00 0.00 1.82
212 213 4.160252 ACAGTGGCACTTCAGAACAATTTT 59.840 37.500 19.43 0.00 0.00 1.82
213 214 5.359576 ACAGTGGCACTTCAGAACAATTTTA 59.640 36.000 19.43 0.00 0.00 1.52
214 215 6.040842 ACAGTGGCACTTCAGAACAATTTTAT 59.959 34.615 19.43 0.00 0.00 1.40
215 216 6.583806 CAGTGGCACTTCAGAACAATTTTATC 59.416 38.462 19.43 0.00 0.00 1.75
216 217 6.265196 AGTGGCACTTCAGAACAATTTTATCA 59.735 34.615 15.88 0.00 0.00 2.15
217 218 6.363357 GTGGCACTTCAGAACAATTTTATCAC 59.637 38.462 11.13 0.00 0.00 3.06
218 219 5.569059 GGCACTTCAGAACAATTTTATCACG 59.431 40.000 0.00 0.00 0.00 4.35
219 220 6.370593 GCACTTCAGAACAATTTTATCACGA 58.629 36.000 0.00 0.00 0.00 4.35
220 221 6.303259 GCACTTCAGAACAATTTTATCACGAC 59.697 38.462 0.00 0.00 0.00 4.34
221 222 6.516355 CACTTCAGAACAATTTTATCACGACG 59.484 38.462 0.00 0.00 0.00 5.12
222 223 5.524511 TCAGAACAATTTTATCACGACGG 57.475 39.130 0.00 0.00 0.00 4.79
223 224 5.231702 TCAGAACAATTTTATCACGACGGA 58.768 37.500 0.00 0.00 0.00 4.69
224 225 5.119588 TCAGAACAATTTTATCACGACGGAC 59.880 40.000 0.00 0.00 0.00 4.79
234 235 2.872557 CGACGGACGTCCAAGCTA 59.127 61.111 32.80 0.00 41.76 3.32
235 236 1.432251 CGACGGACGTCCAAGCTAT 59.568 57.895 32.80 11.39 41.76 2.97
236 237 0.659427 CGACGGACGTCCAAGCTATA 59.341 55.000 32.80 0.00 41.76 1.31
237 238 1.596464 CGACGGACGTCCAAGCTATAC 60.596 57.143 32.80 13.22 41.76 1.47
238 239 1.402968 GACGGACGTCCAAGCTATACA 59.597 52.381 32.80 0.00 39.08 2.29
239 240 1.820519 ACGGACGTCCAAGCTATACAA 59.179 47.619 32.80 0.00 35.14 2.41
240 241 2.429610 ACGGACGTCCAAGCTATACAAT 59.570 45.455 32.80 1.54 35.14 2.71
241 242 2.794910 CGGACGTCCAAGCTATACAATG 59.205 50.000 32.80 9.04 35.14 2.82
242 243 3.131396 GGACGTCCAAGCTATACAATGG 58.869 50.000 29.75 0.00 35.64 3.16
243 244 3.181469 GGACGTCCAAGCTATACAATGGA 60.181 47.826 29.75 0.00 39.57 3.41
244 245 4.503296 GGACGTCCAAGCTATACAATGGAT 60.503 45.833 29.75 0.00 43.41 3.41
245 246 5.036117 ACGTCCAAGCTATACAATGGATT 57.964 39.130 5.87 0.00 43.41 3.01
246 247 5.057149 ACGTCCAAGCTATACAATGGATTC 58.943 41.667 5.87 0.00 43.41 2.52
247 248 4.452455 CGTCCAAGCTATACAATGGATTCC 59.548 45.833 5.87 0.00 43.41 3.01
248 249 5.376625 GTCCAAGCTATACAATGGATTCCA 58.623 41.667 8.08 8.08 43.41 3.53
249 250 5.827797 GTCCAAGCTATACAATGGATTCCAA 59.172 40.000 9.98 0.00 43.41 3.53
250 251 6.321181 GTCCAAGCTATACAATGGATTCCAAA 59.679 38.462 9.98 0.00 43.41 3.28
251 252 6.321181 TCCAAGCTATACAATGGATTCCAAAC 59.679 38.462 9.98 0.00 37.05 2.93
252 253 6.096705 CCAAGCTATACAATGGATTCCAAACA 59.903 38.462 9.98 0.00 36.95 2.83
253 254 7.363705 CCAAGCTATACAATGGATTCCAAACAA 60.364 37.037 9.98 0.00 36.95 2.83
254 255 7.902920 AGCTATACAATGGATTCCAAACAAT 57.097 32.000 9.98 4.58 36.95 2.71
255 256 8.995027 AGCTATACAATGGATTCCAAACAATA 57.005 30.769 9.98 5.46 36.95 1.90
256 257 9.071276 AGCTATACAATGGATTCCAAACAATAG 57.929 33.333 9.98 14.41 36.95 1.73
257 258 9.066892 GCTATACAATGGATTCCAAACAATAGA 57.933 33.333 21.14 6.43 36.95 1.98
260 261 9.699410 ATACAATGGATTCCAAACAATAGAGAA 57.301 29.630 9.98 0.00 36.95 2.87
261 262 8.421249 ACAATGGATTCCAAACAATAGAGAAA 57.579 30.769 9.98 0.00 36.95 2.52
262 263 9.039165 ACAATGGATTCCAAACAATAGAGAAAT 57.961 29.630 9.98 0.00 36.95 2.17
263 264 9.309516 CAATGGATTCCAAACAATAGAGAAATG 57.690 33.333 9.98 0.00 36.95 2.32
264 265 7.408756 TGGATTCCAAACAATAGAGAAATGG 57.591 36.000 1.94 0.00 0.00 3.16
265 266 7.181361 TGGATTCCAAACAATAGAGAAATGGA 58.819 34.615 1.94 0.00 33.88 3.41
266 267 7.673504 TGGATTCCAAACAATAGAGAAATGGAA 59.326 33.333 1.94 6.78 46.16 3.53
267 268 8.193438 GGATTCCAAACAATAGAGAAATGGAAG 58.807 37.037 9.81 0.00 45.54 3.46
268 269 8.884124 ATTCCAAACAATAGAGAAATGGAAGA 57.116 30.769 9.81 0.00 45.54 2.87
269 270 8.884124 TTCCAAACAATAGAGAAATGGAAGAT 57.116 30.769 0.00 0.00 39.75 2.40
270 271 8.284945 TCCAAACAATAGAGAAATGGAAGATG 57.715 34.615 0.00 0.00 32.84 2.90
271 272 7.890127 TCCAAACAATAGAGAAATGGAAGATGT 59.110 33.333 0.00 0.00 32.84 3.06
272 273 8.186821 CCAAACAATAGAGAAATGGAAGATGTC 58.813 37.037 0.00 0.00 0.00 3.06
273 274 8.954350 CAAACAATAGAGAAATGGAAGATGTCT 58.046 33.333 0.00 0.00 0.00 3.41
275 276 9.829507 AACAATAGAGAAATGGAAGATGTCTAG 57.170 33.333 0.00 0.00 0.00 2.43
276 277 8.428063 ACAATAGAGAAATGGAAGATGTCTAGG 58.572 37.037 0.00 0.00 0.00 3.02
277 278 5.289083 AGAGAAATGGAAGATGTCTAGGC 57.711 43.478 0.00 0.00 0.00 3.93
278 279 4.718774 AGAGAAATGGAAGATGTCTAGGCA 59.281 41.667 0.00 0.00 0.00 4.75
279 280 5.369110 AGAGAAATGGAAGATGTCTAGGCAT 59.631 40.000 10.24 10.24 0.00 4.40
280 281 5.374921 AGAAATGGAAGATGTCTAGGCATG 58.625 41.667 16.10 0.00 0.00 4.06
281 282 3.784511 ATGGAAGATGTCTAGGCATGG 57.215 47.619 16.10 0.00 0.00 3.66
282 283 1.141657 TGGAAGATGTCTAGGCATGGC 59.858 52.381 16.10 12.14 0.00 4.40
283 284 1.141657 GGAAGATGTCTAGGCATGGCA 59.858 52.381 22.64 6.63 0.00 4.92
284 285 2.421952 GGAAGATGTCTAGGCATGGCAA 60.422 50.000 22.64 3.33 0.00 4.52
285 286 2.338577 AGATGTCTAGGCATGGCAAC 57.661 50.000 22.64 15.95 0.00 4.17
286 287 1.133976 AGATGTCTAGGCATGGCAACC 60.134 52.381 22.64 0.00 0.00 3.77
287 288 0.106519 ATGTCTAGGCATGGCAACCC 60.107 55.000 22.64 7.03 0.00 4.11
288 289 1.819632 GTCTAGGCATGGCAACCCG 60.820 63.158 22.64 4.62 0.00 5.28
289 290 1.992834 TCTAGGCATGGCAACCCGA 60.993 57.895 22.64 6.93 0.00 5.14
290 291 1.077787 CTAGGCATGGCAACCCGAA 60.078 57.895 22.64 0.00 0.00 4.30
291 292 0.679640 CTAGGCATGGCAACCCGAAA 60.680 55.000 22.64 0.00 0.00 3.46
292 293 0.251386 TAGGCATGGCAACCCGAAAA 60.251 50.000 22.64 0.00 0.00 2.29
293 294 1.079888 GGCATGGCAACCCGAAAAG 60.080 57.895 15.47 0.00 0.00 2.27
294 295 1.665442 GCATGGCAACCCGAAAAGT 59.335 52.632 0.00 0.00 0.00 2.66
295 296 0.033366 GCATGGCAACCCGAAAAGTT 59.967 50.000 0.00 0.00 0.00 2.66
296 297 1.782044 CATGGCAACCCGAAAAGTTG 58.218 50.000 0.00 0.00 45.92 3.16
297 298 0.678950 ATGGCAACCCGAAAAGTTGG 59.321 50.000 5.85 0.00 43.86 3.77
303 304 3.036431 CCCGAAAAGTTGGGCTTCT 57.964 52.632 0.00 0.00 38.90 2.85
304 305 1.328279 CCCGAAAAGTTGGGCTTCTT 58.672 50.000 0.00 0.00 38.90 2.52
305 306 1.269723 CCCGAAAAGTTGGGCTTCTTC 59.730 52.381 0.00 0.00 38.90 2.87
306 307 2.230660 CCGAAAAGTTGGGCTTCTTCT 58.769 47.619 0.00 0.00 36.17 2.85
307 308 2.226674 CCGAAAAGTTGGGCTTCTTCTC 59.773 50.000 0.00 0.00 36.17 2.87
308 309 2.096218 CGAAAAGTTGGGCTTCTTCTCG 60.096 50.000 0.00 0.00 36.17 4.04
309 310 1.897560 AAAGTTGGGCTTCTTCTCGG 58.102 50.000 0.00 0.00 36.17 4.63
310 311 0.765510 AAGTTGGGCTTCTTCTCGGT 59.234 50.000 0.00 0.00 30.06 4.69
311 312 0.765510 AGTTGGGCTTCTTCTCGGTT 59.234 50.000 0.00 0.00 0.00 4.44
312 313 1.975680 AGTTGGGCTTCTTCTCGGTTA 59.024 47.619 0.00 0.00 0.00 2.85
313 314 2.028020 AGTTGGGCTTCTTCTCGGTTAG 60.028 50.000 0.00 0.00 0.00 2.34
314 315 0.902531 TGGGCTTCTTCTCGGTTAGG 59.097 55.000 0.00 0.00 0.00 2.69
315 316 0.903236 GGGCTTCTTCTCGGTTAGGT 59.097 55.000 0.00 0.00 0.00 3.08
316 317 1.405661 GGGCTTCTTCTCGGTTAGGTG 60.406 57.143 0.00 0.00 0.00 4.00
317 318 1.360820 GCTTCTTCTCGGTTAGGTGC 58.639 55.000 0.00 0.00 0.00 5.01
318 319 1.337823 GCTTCTTCTCGGTTAGGTGCA 60.338 52.381 0.00 0.00 0.00 4.57
319 320 2.678190 GCTTCTTCTCGGTTAGGTGCAT 60.678 50.000 0.00 0.00 0.00 3.96
320 321 2.961526 TCTTCTCGGTTAGGTGCATC 57.038 50.000 0.00 0.00 0.00 3.91
321 322 2.176045 TCTTCTCGGTTAGGTGCATCA 58.824 47.619 0.00 0.00 0.00 3.07
322 323 2.565391 TCTTCTCGGTTAGGTGCATCAA 59.435 45.455 0.00 0.00 0.00 2.57
323 324 2.380084 TCTCGGTTAGGTGCATCAAC 57.620 50.000 0.00 1.62 0.00 3.18
324 325 1.621317 TCTCGGTTAGGTGCATCAACA 59.379 47.619 0.00 0.00 0.00 3.33
325 326 2.236146 TCTCGGTTAGGTGCATCAACAT 59.764 45.455 0.00 0.00 0.00 2.71
326 327 2.609459 CTCGGTTAGGTGCATCAACATC 59.391 50.000 0.00 0.00 0.00 3.06
327 328 1.327460 CGGTTAGGTGCATCAACATCG 59.673 52.381 0.00 0.00 0.00 3.84
328 329 2.627945 GGTTAGGTGCATCAACATCGA 58.372 47.619 0.00 0.00 0.00 3.59
329 330 3.206150 GGTTAGGTGCATCAACATCGAT 58.794 45.455 0.00 0.00 0.00 3.59
330 331 3.248602 GGTTAGGTGCATCAACATCGATC 59.751 47.826 0.00 0.00 0.00 3.69
331 332 1.575244 AGGTGCATCAACATCGATCG 58.425 50.000 9.36 9.36 0.00 3.69
332 333 1.136891 AGGTGCATCAACATCGATCGA 59.863 47.619 21.86 21.86 0.00 3.59
333 334 1.258982 GGTGCATCAACATCGATCGAC 59.741 52.381 22.06 5.51 0.00 4.20
334 335 2.196749 GTGCATCAACATCGATCGACT 58.803 47.619 22.06 5.55 0.00 4.18
335 336 2.217393 GTGCATCAACATCGATCGACTC 59.783 50.000 22.06 2.22 0.00 3.36
336 337 2.159254 TGCATCAACATCGATCGACTCA 60.159 45.455 22.06 6.65 0.00 3.41
337 338 2.860136 GCATCAACATCGATCGACTCAA 59.140 45.455 22.06 5.73 0.00 3.02
338 339 3.302092 GCATCAACATCGATCGACTCAAC 60.302 47.826 22.06 1.74 0.00 3.18
339 340 3.569250 TCAACATCGATCGACTCAACA 57.431 42.857 22.06 0.00 0.00 3.33
340 341 3.908213 TCAACATCGATCGACTCAACAA 58.092 40.909 22.06 0.00 0.00 2.83
341 342 3.920412 TCAACATCGATCGACTCAACAAG 59.080 43.478 22.06 5.51 0.00 3.16
342 343 2.263077 ACATCGATCGACTCAACAAGC 58.737 47.619 22.06 0.00 0.00 4.01
343 344 2.094494 ACATCGATCGACTCAACAAGCT 60.094 45.455 22.06 0.00 0.00 3.74
344 345 2.724977 TCGATCGACTCAACAAGCTT 57.275 45.000 15.15 0.00 0.00 3.74
345 346 2.596452 TCGATCGACTCAACAAGCTTC 58.404 47.619 15.15 0.00 0.00 3.86
346 347 2.030274 TCGATCGACTCAACAAGCTTCA 60.030 45.455 15.15 0.00 0.00 3.02
347 348 2.926200 CGATCGACTCAACAAGCTTCAT 59.074 45.455 10.26 0.00 0.00 2.57
348 349 3.241900 CGATCGACTCAACAAGCTTCATG 60.242 47.826 10.26 0.00 0.00 3.07
349 350 3.111853 TCGACTCAACAAGCTTCATGT 57.888 42.857 0.00 0.00 0.00 3.21
350 351 3.466836 TCGACTCAACAAGCTTCATGTT 58.533 40.909 0.00 0.00 41.50 2.71
351 352 3.494626 TCGACTCAACAAGCTTCATGTTC 59.505 43.478 0.00 0.00 38.90 3.18
352 353 3.496130 CGACTCAACAAGCTTCATGTTCT 59.504 43.478 0.00 0.00 38.90 3.01
353 354 4.376819 CGACTCAACAAGCTTCATGTTCTC 60.377 45.833 0.00 0.00 38.90 2.87
354 355 4.454678 ACTCAACAAGCTTCATGTTCTCA 58.545 39.130 0.00 0.00 38.90 3.27
355 356 5.068636 ACTCAACAAGCTTCATGTTCTCAT 58.931 37.500 0.00 0.00 38.90 2.90
369 370 7.269435 CATGTTCTCATGGAAACGAAAAATC 57.731 36.000 0.00 0.00 45.30 2.17
370 371 6.633500 TGTTCTCATGGAAACGAAAAATCT 57.367 33.333 0.00 0.00 35.51 2.40
371 372 7.038154 TGTTCTCATGGAAACGAAAAATCTT 57.962 32.000 0.00 0.00 35.51 2.40
372 373 8.160521 TGTTCTCATGGAAACGAAAAATCTTA 57.839 30.769 0.00 0.00 35.51 2.10
373 374 8.625651 TGTTCTCATGGAAACGAAAAATCTTAA 58.374 29.630 0.00 0.00 35.51 1.85
374 375 9.626045 GTTCTCATGGAAACGAAAAATCTTAAT 57.374 29.630 0.00 0.00 35.51 1.40
375 376 9.624697 TTCTCATGGAAACGAAAAATCTTAATG 57.375 29.630 0.00 0.00 0.00 1.90
376 377 8.243426 TCTCATGGAAACGAAAAATCTTAATGG 58.757 33.333 0.00 0.00 0.00 3.16
377 378 8.116651 TCATGGAAACGAAAAATCTTAATGGA 57.883 30.769 0.00 0.00 0.00 3.41
378 379 8.580720 TCATGGAAACGAAAAATCTTAATGGAA 58.419 29.630 0.00 0.00 0.00 3.53
379 380 9.202273 CATGGAAACGAAAAATCTTAATGGAAA 57.798 29.630 0.00 0.00 0.00 3.13
380 381 9.771534 ATGGAAACGAAAAATCTTAATGGAAAA 57.228 25.926 0.00 0.00 0.00 2.29
381 382 9.601217 TGGAAACGAAAAATCTTAATGGAAAAA 57.399 25.926 0.00 0.00 0.00 1.94
406 407 1.574263 GGAAGCTTCCTGTACCTCCT 58.426 55.000 33.98 0.00 44.11 3.69
407 408 2.748388 GGAAGCTTCCTGTACCTCCTA 58.252 52.381 33.98 0.00 44.11 2.94
408 409 3.105283 GGAAGCTTCCTGTACCTCCTAA 58.895 50.000 33.98 0.00 44.11 2.69
409 410 3.518303 GGAAGCTTCCTGTACCTCCTAAA 59.482 47.826 33.98 0.00 44.11 1.85
410 411 4.383226 GGAAGCTTCCTGTACCTCCTAAAG 60.383 50.000 33.98 0.00 44.11 1.85
411 412 3.792515 AGCTTCCTGTACCTCCTAAAGT 58.207 45.455 0.00 0.00 0.00 2.66
412 413 3.770388 AGCTTCCTGTACCTCCTAAAGTC 59.230 47.826 0.00 0.00 0.00 3.01
413 414 3.118702 GCTTCCTGTACCTCCTAAAGTCC 60.119 52.174 0.00 0.00 0.00 3.85
414 415 2.731572 TCCTGTACCTCCTAAAGTCCG 58.268 52.381 0.00 0.00 0.00 4.79
415 416 1.136500 CCTGTACCTCCTAAAGTCCGC 59.864 57.143 0.00 0.00 0.00 5.54
416 417 1.822990 CTGTACCTCCTAAAGTCCGCA 59.177 52.381 0.00 0.00 0.00 5.69
417 418 2.232941 CTGTACCTCCTAAAGTCCGCAA 59.767 50.000 0.00 0.00 0.00 4.85
418 419 2.835764 TGTACCTCCTAAAGTCCGCAAT 59.164 45.455 0.00 0.00 0.00 3.56
419 420 3.262405 TGTACCTCCTAAAGTCCGCAATT 59.738 43.478 0.00 0.00 0.00 2.32
420 421 3.434940 ACCTCCTAAAGTCCGCAATTT 57.565 42.857 0.00 0.00 0.00 1.82
421 422 3.763057 ACCTCCTAAAGTCCGCAATTTT 58.237 40.909 0.00 0.00 0.00 1.82
422 423 4.149598 ACCTCCTAAAGTCCGCAATTTTT 58.850 39.130 0.00 0.00 0.00 1.94
423 424 4.022329 ACCTCCTAAAGTCCGCAATTTTTG 60.022 41.667 0.00 0.00 0.00 2.44
424 425 4.485163 CTCCTAAAGTCCGCAATTTTTGG 58.515 43.478 0.00 0.00 33.00 3.28
425 426 3.892588 TCCTAAAGTCCGCAATTTTTGGT 59.107 39.130 5.14 0.00 33.33 3.67
426 427 3.987220 CCTAAAGTCCGCAATTTTTGGTG 59.013 43.478 0.00 0.00 29.12 4.17
427 428 2.524569 AAGTCCGCAATTTTTGGTGG 57.475 45.000 0.00 0.00 36.00 4.61
428 429 1.698506 AGTCCGCAATTTTTGGTGGA 58.301 45.000 0.00 0.00 41.17 4.02
429 430 1.613437 AGTCCGCAATTTTTGGTGGAG 59.387 47.619 0.00 0.00 43.83 3.86
430 431 1.611491 GTCCGCAATTTTTGGTGGAGA 59.389 47.619 0.00 0.00 43.83 3.71
431 432 1.885887 TCCGCAATTTTTGGTGGAGAG 59.114 47.619 0.00 0.00 38.70 3.20
432 433 1.613437 CCGCAATTTTTGGTGGAGAGT 59.387 47.619 0.00 0.00 36.80 3.24
433 434 2.607771 CCGCAATTTTTGGTGGAGAGTG 60.608 50.000 0.00 0.00 36.80 3.51
434 435 2.293122 CGCAATTTTTGGTGGAGAGTGA 59.707 45.455 0.00 0.00 0.00 3.41
435 436 3.057315 CGCAATTTTTGGTGGAGAGTGAT 60.057 43.478 0.00 0.00 0.00 3.06
436 437 4.488879 GCAATTTTTGGTGGAGAGTGATC 58.511 43.478 0.00 0.00 0.00 2.92
437 438 4.022068 GCAATTTTTGGTGGAGAGTGATCA 60.022 41.667 0.00 0.00 0.00 2.92
438 439 5.509501 GCAATTTTTGGTGGAGAGTGATCAA 60.510 40.000 0.00 0.00 0.00 2.57
439 440 5.712152 ATTTTTGGTGGAGAGTGATCAAC 57.288 39.130 0.00 0.00 0.00 3.18
440 441 3.855255 TTTGGTGGAGAGTGATCAACA 57.145 42.857 0.00 0.00 0.00 3.33
441 442 3.855255 TTGGTGGAGAGTGATCAACAA 57.145 42.857 0.00 0.00 35.97 2.83
442 443 3.855255 TGGTGGAGAGTGATCAACAAA 57.145 42.857 0.00 0.00 0.00 2.83
443 444 4.371624 TGGTGGAGAGTGATCAACAAAT 57.628 40.909 0.00 0.00 0.00 2.32
444 445 4.728772 TGGTGGAGAGTGATCAACAAATT 58.271 39.130 0.00 0.00 0.00 1.82
445 446 4.761739 TGGTGGAGAGTGATCAACAAATTC 59.238 41.667 0.00 0.00 0.00 2.17
446 447 4.142816 GGTGGAGAGTGATCAACAAATTCG 60.143 45.833 0.00 0.00 0.00 3.34
447 448 4.452455 GTGGAGAGTGATCAACAAATTCGT 59.548 41.667 0.00 0.00 0.00 3.85
448 449 5.049405 GTGGAGAGTGATCAACAAATTCGTT 60.049 40.000 0.00 0.00 0.00 3.85
449 450 5.179368 TGGAGAGTGATCAACAAATTCGTTC 59.821 40.000 0.00 0.00 0.00 3.95
450 451 5.409826 GGAGAGTGATCAACAAATTCGTTCT 59.590 40.000 0.00 0.00 0.00 3.01
451 452 6.233430 AGAGTGATCAACAAATTCGTTCTG 57.767 37.500 0.00 0.00 0.00 3.02
452 453 5.991606 AGAGTGATCAACAAATTCGTTCTGA 59.008 36.000 0.00 0.00 0.00 3.27
453 454 5.990408 AGTGATCAACAAATTCGTTCTGAC 58.010 37.500 0.00 0.00 0.00 3.51
454 455 5.760253 AGTGATCAACAAATTCGTTCTGACT 59.240 36.000 0.00 0.00 0.00 3.41
455 456 6.929049 AGTGATCAACAAATTCGTTCTGACTA 59.071 34.615 0.00 0.00 0.00 2.59
456 457 7.604164 AGTGATCAACAAATTCGTTCTGACTAT 59.396 33.333 0.00 0.00 0.00 2.12
457 458 8.869897 GTGATCAACAAATTCGTTCTGACTATA 58.130 33.333 0.00 0.00 0.00 1.31
458 459 9.599866 TGATCAACAAATTCGTTCTGACTATAT 57.400 29.630 0.00 0.00 0.00 0.86
515 522 7.455008 CACCTGTGTATTCCCTAGATTATAGGT 59.545 40.741 3.76 0.00 32.88 3.08
520 527 9.310449 GTGTATTCCCTAGATTATAGGTTCTGA 57.690 37.037 3.76 0.00 32.88 3.27
728 746 1.152546 GCTCCCTCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
866 884 4.097863 GCCACTGTTTACCGCCGC 62.098 66.667 0.00 0.00 0.00 6.53
874 892 3.479127 TTTACCGCCGCCACCACTT 62.479 57.895 0.00 0.00 0.00 3.16
965 985 1.882623 GTTTCTTCTCAACCCAGCAGG 59.117 52.381 0.00 0.00 43.78 4.85
1014 1036 3.055819 TCTTTCTCATGGTTCTTCTCCGG 60.056 47.826 0.00 0.00 0.00 5.14
1109 1132 1.201647 CGTTGTCCTGTGGATCTACGT 59.798 52.381 4.63 0.00 32.73 3.57
1365 1388 0.321564 CCACGCAGTTCCTTCATGGA 60.322 55.000 0.00 0.00 41.61 3.41
2066 3875 5.336213 CCTTGACCAAATCCAGTTCTTCATG 60.336 44.000 0.00 0.00 0.00 3.07
2130 3939 2.891941 TTCCCATCACCGCATCTGGC 62.892 60.000 0.00 0.00 39.90 4.85
2186 3999 7.436673 CCTTACTGATATTCTTGTTTCTCCTCG 59.563 40.741 0.00 0.00 0.00 4.63
2223 4036 5.860182 CCTTATCTCAGTTCGTCGTTTTACA 59.140 40.000 0.00 0.00 0.00 2.41
2224 4037 6.033619 CCTTATCTCAGTTCGTCGTTTTACAG 59.966 42.308 0.00 0.00 0.00 2.74
2325 4138 2.256158 CGTTAGTCACGGCGACCA 59.744 61.111 16.62 0.00 46.69 4.02
2419 4232 3.461773 CGACTCGGCCATCCCAGT 61.462 66.667 2.24 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.950496 GTGTTCCATATCCATAACTGAAGATAT 57.050 33.333 0.00 0.00 33.27 1.63
41 42 8.088365 CGTGTTCCATATCCATAACTGAAGATA 58.912 37.037 0.00 0.00 0.00 1.98
42 43 6.931281 CGTGTTCCATATCCATAACTGAAGAT 59.069 38.462 0.00 0.00 0.00 2.40
43 44 6.097696 TCGTGTTCCATATCCATAACTGAAGA 59.902 38.462 0.00 0.00 0.00 2.87
44 45 6.280643 TCGTGTTCCATATCCATAACTGAAG 58.719 40.000 0.00 0.00 0.00 3.02
45 46 6.228616 TCGTGTTCCATATCCATAACTGAA 57.771 37.500 0.00 0.00 0.00 3.02
46 47 5.862678 TCGTGTTCCATATCCATAACTGA 57.137 39.130 0.00 0.00 0.00 3.41
47 48 6.315144 TGTTTCGTGTTCCATATCCATAACTG 59.685 38.462 0.00 0.00 0.00 3.16
48 49 6.315393 GTGTTTCGTGTTCCATATCCATAACT 59.685 38.462 0.00 0.00 0.00 2.24
49 50 6.457799 GGTGTTTCGTGTTCCATATCCATAAC 60.458 42.308 0.00 0.00 0.00 1.89
50 51 5.587043 GGTGTTTCGTGTTCCATATCCATAA 59.413 40.000 0.00 0.00 0.00 1.90
51 52 5.120399 GGTGTTTCGTGTTCCATATCCATA 58.880 41.667 0.00 0.00 0.00 2.74
52 53 3.945285 GGTGTTTCGTGTTCCATATCCAT 59.055 43.478 0.00 0.00 0.00 3.41
53 54 3.244596 TGGTGTTTCGTGTTCCATATCCA 60.245 43.478 0.00 0.00 0.00 3.41
54 55 3.340034 TGGTGTTTCGTGTTCCATATCC 58.660 45.455 0.00 0.00 0.00 2.59
55 56 5.365403 TTTGGTGTTTCGTGTTCCATATC 57.635 39.130 0.00 0.00 0.00 1.63
56 57 5.776173 TTTTGGTGTTTCGTGTTCCATAT 57.224 34.783 0.00 0.00 0.00 1.78
57 58 5.578005 TTTTTGGTGTTTCGTGTTCCATA 57.422 34.783 0.00 0.00 0.00 2.74
58 59 4.457834 TTTTTGGTGTTTCGTGTTCCAT 57.542 36.364 0.00 0.00 0.00 3.41
59 60 3.936372 TTTTTGGTGTTTCGTGTTCCA 57.064 38.095 0.00 0.00 0.00 3.53
60 61 8.751302 AATATATTTTTGGTGTTTCGTGTTCC 57.249 30.769 0.00 0.00 0.00 3.62
81 82 8.924303 TCCATGAGTAGCAAGTACAACTAATAT 58.076 33.333 0.00 0.00 33.55 1.28
82 83 8.301252 TCCATGAGTAGCAAGTACAACTAATA 57.699 34.615 0.00 0.00 33.55 0.98
83 84 7.124298 TCTCCATGAGTAGCAAGTACAACTAAT 59.876 37.037 0.00 0.00 33.55 1.73
84 85 6.436218 TCTCCATGAGTAGCAAGTACAACTAA 59.564 38.462 0.00 0.00 33.55 2.24
85 86 5.949952 TCTCCATGAGTAGCAAGTACAACTA 59.050 40.000 0.00 0.00 33.55 2.24
86 87 4.772624 TCTCCATGAGTAGCAAGTACAACT 59.227 41.667 0.00 0.00 33.55 3.16
87 88 5.073311 TCTCCATGAGTAGCAAGTACAAC 57.927 43.478 0.00 0.00 33.55 3.32
88 89 5.395657 CCATCTCCATGAGTAGCAAGTACAA 60.396 44.000 0.00 0.00 33.55 2.41
89 90 4.100035 CCATCTCCATGAGTAGCAAGTACA 59.900 45.833 0.00 0.00 33.55 2.90
90 91 4.502259 CCCATCTCCATGAGTAGCAAGTAC 60.502 50.000 0.00 0.00 30.57 2.73
91 92 3.643320 CCCATCTCCATGAGTAGCAAGTA 59.357 47.826 0.00 0.00 30.57 2.24
92 93 2.437281 CCCATCTCCATGAGTAGCAAGT 59.563 50.000 0.00 0.00 30.57 3.16
93 94 2.224475 CCCCATCTCCATGAGTAGCAAG 60.224 54.545 0.00 0.00 30.57 4.01
94 95 1.770658 CCCCATCTCCATGAGTAGCAA 59.229 52.381 0.00 0.00 30.57 3.91
95 96 1.062198 TCCCCATCTCCATGAGTAGCA 60.062 52.381 0.00 0.00 30.57 3.49
96 97 1.722034 TCCCCATCTCCATGAGTAGC 58.278 55.000 0.00 0.00 30.57 3.58
97 98 2.370189 GGTTCCCCATCTCCATGAGTAG 59.630 54.545 0.00 0.00 30.57 2.57
98 99 2.022035 AGGTTCCCCATCTCCATGAGTA 60.022 50.000 0.00 0.00 30.57 2.59
99 100 1.216990 GGTTCCCCATCTCCATGAGT 58.783 55.000 0.00 0.00 30.57 3.41
100 101 1.419387 GAGGTTCCCCATCTCCATGAG 59.581 57.143 0.00 0.00 30.57 2.90
101 102 1.511613 GAGGTTCCCCATCTCCATGA 58.488 55.000 0.00 0.00 30.57 3.07
102 103 0.475906 GGAGGTTCCCCATCTCCATG 59.524 60.000 0.00 0.00 44.72 3.66
103 104 2.951690 GGAGGTTCCCCATCTCCAT 58.048 57.895 0.00 0.00 44.72 3.41
104 105 4.500125 GGAGGTTCCCCATCTCCA 57.500 61.111 0.00 0.00 44.72 3.86
105 106 2.050918 CTTAGGAGGTTCCCCATCTCC 58.949 57.143 0.00 0.00 45.46 3.71
106 107 1.418264 GCTTAGGAGGTTCCCCATCTC 59.582 57.143 0.00 0.00 37.19 2.75
107 108 1.010170 AGCTTAGGAGGTTCCCCATCT 59.990 52.381 0.00 0.00 37.19 2.90
108 109 1.512735 AGCTTAGGAGGTTCCCCATC 58.487 55.000 0.00 0.00 37.19 3.51
109 110 1.987080 AAGCTTAGGAGGTTCCCCAT 58.013 50.000 0.00 0.00 39.27 4.00
110 111 3.513453 AAGCTTAGGAGGTTCCCCA 57.487 52.632 0.00 0.00 39.27 4.96
115 116 2.502130 GCTGTAGGAAGCTTAGGAGGTT 59.498 50.000 0.00 0.00 45.73 3.50
116 117 2.112190 GCTGTAGGAAGCTTAGGAGGT 58.888 52.381 0.00 0.00 40.20 3.85
117 118 1.067821 CGCTGTAGGAAGCTTAGGAGG 59.932 57.143 0.00 0.00 41.24 4.30
118 119 1.067821 CCGCTGTAGGAAGCTTAGGAG 59.932 57.143 0.00 0.00 41.24 3.69
119 120 1.112113 CCGCTGTAGGAAGCTTAGGA 58.888 55.000 0.00 0.00 41.24 2.94
120 121 0.824759 ACCGCTGTAGGAAGCTTAGG 59.175 55.000 0.00 0.00 41.24 2.69
121 122 1.471676 CCACCGCTGTAGGAAGCTTAG 60.472 57.143 0.00 0.00 41.24 2.18
122 123 0.535335 CCACCGCTGTAGGAAGCTTA 59.465 55.000 0.00 0.00 41.24 3.09
123 124 1.296715 CCACCGCTGTAGGAAGCTT 59.703 57.895 0.00 0.00 41.24 3.74
124 125 2.982130 CCACCGCTGTAGGAAGCT 59.018 61.111 0.00 0.00 41.24 3.74
125 126 2.820037 GCCACCGCTGTAGGAAGC 60.820 66.667 1.91 0.00 39.94 3.86
126 127 2.982130 AGCCACCGCTGTAGGAAG 59.018 61.111 1.91 0.00 46.19 3.46
135 136 4.692475 AACCACCGTAGCCACCGC 62.692 66.667 0.00 0.00 0.00 5.68
136 137 2.740826 CAACCACCGTAGCCACCG 60.741 66.667 0.00 0.00 0.00 4.94
137 138 2.359478 CCAACCACCGTAGCCACC 60.359 66.667 0.00 0.00 0.00 4.61
138 139 1.375523 CTCCAACCACCGTAGCCAC 60.376 63.158 0.00 0.00 0.00 5.01
139 140 1.534476 TCTCCAACCACCGTAGCCA 60.534 57.895 0.00 0.00 0.00 4.75
140 141 1.218316 CTCTCCAACCACCGTAGCC 59.782 63.158 0.00 0.00 0.00 3.93
141 142 0.320697 AACTCTCCAACCACCGTAGC 59.679 55.000 0.00 0.00 0.00 3.58
142 143 1.616865 TCAACTCTCCAACCACCGTAG 59.383 52.381 0.00 0.00 0.00 3.51
143 144 1.707106 TCAACTCTCCAACCACCGTA 58.293 50.000 0.00 0.00 0.00 4.02
144 145 1.056660 ATCAACTCTCCAACCACCGT 58.943 50.000 0.00 0.00 0.00 4.83
145 146 1.806542 CAATCAACTCTCCAACCACCG 59.193 52.381 0.00 0.00 0.00 4.94
146 147 2.814336 GTCAATCAACTCTCCAACCACC 59.186 50.000 0.00 0.00 0.00 4.61
147 148 2.814336 GGTCAATCAACTCTCCAACCAC 59.186 50.000 0.00 0.00 0.00 4.16
148 149 2.441375 TGGTCAATCAACTCTCCAACCA 59.559 45.455 0.00 0.00 33.35 3.67
149 150 3.140325 TGGTCAATCAACTCTCCAACC 57.860 47.619 0.00 0.00 0.00 3.77
150 151 4.074970 ACATGGTCAATCAACTCTCCAAC 58.925 43.478 0.00 0.00 0.00 3.77
151 152 4.371624 ACATGGTCAATCAACTCTCCAA 57.628 40.909 0.00 0.00 0.00 3.53
152 153 4.371624 AACATGGTCAATCAACTCTCCA 57.628 40.909 0.00 0.00 0.00 3.86
153 154 6.678900 GCATTAACATGGTCAATCAACTCTCC 60.679 42.308 0.00 0.00 0.00 3.71
154 155 6.127925 TGCATTAACATGGTCAATCAACTCTC 60.128 38.462 0.00 0.00 0.00 3.20
155 156 5.711506 TGCATTAACATGGTCAATCAACTCT 59.288 36.000 0.00 0.00 0.00 3.24
156 157 5.953183 TGCATTAACATGGTCAATCAACTC 58.047 37.500 0.00 0.00 0.00 3.01
157 158 5.711506 TCTGCATTAACATGGTCAATCAACT 59.288 36.000 0.00 0.00 0.00 3.16
158 159 5.953183 TCTGCATTAACATGGTCAATCAAC 58.047 37.500 0.00 0.00 0.00 3.18
159 160 5.711506 ACTCTGCATTAACATGGTCAATCAA 59.288 36.000 0.00 0.00 0.00 2.57
160 161 5.124297 CACTCTGCATTAACATGGTCAATCA 59.876 40.000 0.00 0.00 0.00 2.57
161 162 5.449588 CCACTCTGCATTAACATGGTCAATC 60.450 44.000 0.00 0.00 0.00 2.67
162 163 4.400251 CCACTCTGCATTAACATGGTCAAT 59.600 41.667 0.00 0.00 0.00 2.57
163 164 3.758023 CCACTCTGCATTAACATGGTCAA 59.242 43.478 0.00 0.00 0.00 3.18
164 165 3.346315 CCACTCTGCATTAACATGGTCA 58.654 45.455 0.00 0.00 0.00 4.02
165 166 2.684881 CCCACTCTGCATTAACATGGTC 59.315 50.000 0.00 0.00 0.00 4.02
166 167 2.308570 TCCCACTCTGCATTAACATGGT 59.691 45.455 0.00 0.00 0.00 3.55
167 168 3.003394 TCCCACTCTGCATTAACATGG 57.997 47.619 0.00 0.00 0.00 3.66
168 169 5.125356 TGTATCCCACTCTGCATTAACATG 58.875 41.667 0.00 0.00 0.00 3.21
169 170 5.104360 ACTGTATCCCACTCTGCATTAACAT 60.104 40.000 0.00 0.00 0.00 2.71
170 171 4.225042 ACTGTATCCCACTCTGCATTAACA 59.775 41.667 0.00 0.00 0.00 2.41
171 172 4.572389 CACTGTATCCCACTCTGCATTAAC 59.428 45.833 0.00 0.00 0.00 2.01
172 173 4.384098 CCACTGTATCCCACTCTGCATTAA 60.384 45.833 0.00 0.00 0.00 1.40
173 174 3.134623 CCACTGTATCCCACTCTGCATTA 59.865 47.826 0.00 0.00 0.00 1.90
174 175 2.092753 CCACTGTATCCCACTCTGCATT 60.093 50.000 0.00 0.00 0.00 3.56
175 176 1.487976 CCACTGTATCCCACTCTGCAT 59.512 52.381 0.00 0.00 0.00 3.96
176 177 0.904649 CCACTGTATCCCACTCTGCA 59.095 55.000 0.00 0.00 0.00 4.41
177 178 0.462759 GCCACTGTATCCCACTCTGC 60.463 60.000 0.00 0.00 0.00 4.26
178 179 0.904649 TGCCACTGTATCCCACTCTG 59.095 55.000 0.00 0.00 0.00 3.35
179 180 0.905357 GTGCCACTGTATCCCACTCT 59.095 55.000 0.00 0.00 0.00 3.24
180 181 0.905357 AGTGCCACTGTATCCCACTC 59.095 55.000 0.00 0.00 31.61 3.51
181 182 1.279271 GAAGTGCCACTGTATCCCACT 59.721 52.381 0.00 0.00 38.30 4.00
182 183 1.003118 TGAAGTGCCACTGTATCCCAC 59.997 52.381 0.00 0.00 0.00 4.61
183 184 1.278985 CTGAAGTGCCACTGTATCCCA 59.721 52.381 0.00 0.00 0.00 4.37
184 185 1.555075 TCTGAAGTGCCACTGTATCCC 59.445 52.381 0.00 0.00 0.00 3.85
185 186 3.003480 GTTCTGAAGTGCCACTGTATCC 58.997 50.000 0.00 0.00 0.00 2.59
186 187 3.664107 TGTTCTGAAGTGCCACTGTATC 58.336 45.455 0.00 0.00 0.00 2.24
187 188 3.769739 TGTTCTGAAGTGCCACTGTAT 57.230 42.857 0.00 0.00 0.00 2.29
188 189 3.552132 TTGTTCTGAAGTGCCACTGTA 57.448 42.857 0.00 0.00 0.00 2.74
189 190 2.418368 TTGTTCTGAAGTGCCACTGT 57.582 45.000 0.00 0.00 0.00 3.55
190 191 3.996150 AATTGTTCTGAAGTGCCACTG 57.004 42.857 0.00 0.00 0.00 3.66
191 192 6.265196 TGATAAAATTGTTCTGAAGTGCCACT 59.735 34.615 0.00 0.00 0.00 4.00
192 193 6.363357 GTGATAAAATTGTTCTGAAGTGCCAC 59.637 38.462 0.00 0.00 0.00 5.01
193 194 6.446318 GTGATAAAATTGTTCTGAAGTGCCA 58.554 36.000 0.00 0.00 0.00 4.92
194 195 5.569059 CGTGATAAAATTGTTCTGAAGTGCC 59.431 40.000 0.00 0.00 0.00 5.01
195 196 6.303259 GTCGTGATAAAATTGTTCTGAAGTGC 59.697 38.462 0.00 0.00 0.00 4.40
196 197 6.516355 CGTCGTGATAAAATTGTTCTGAAGTG 59.484 38.462 0.00 0.00 0.00 3.16
197 198 6.347402 CCGTCGTGATAAAATTGTTCTGAAGT 60.347 38.462 0.00 0.00 0.00 3.01
198 199 6.015504 CCGTCGTGATAAAATTGTTCTGAAG 58.984 40.000 0.00 0.00 0.00 3.02
199 200 5.697178 TCCGTCGTGATAAAATTGTTCTGAA 59.303 36.000 0.00 0.00 0.00 3.02
200 201 5.119588 GTCCGTCGTGATAAAATTGTTCTGA 59.880 40.000 0.00 0.00 0.00 3.27
201 202 5.313623 GTCCGTCGTGATAAAATTGTTCTG 58.686 41.667 0.00 0.00 0.00 3.02
202 203 4.090930 CGTCCGTCGTGATAAAATTGTTCT 59.909 41.667 0.00 0.00 34.52 3.01
203 204 4.320491 CGTCCGTCGTGATAAAATTGTTC 58.680 43.478 0.00 0.00 34.52 3.18
204 205 4.316375 CGTCCGTCGTGATAAAATTGTT 57.684 40.909 0.00 0.00 34.52 2.83
205 206 3.984018 CGTCCGTCGTGATAAAATTGT 57.016 42.857 0.00 0.00 34.52 2.71
217 218 0.659427 TATAGCTTGGACGTCCGTCG 59.341 55.000 28.70 19.53 45.41 5.12
218 219 1.402968 TGTATAGCTTGGACGTCCGTC 59.597 52.381 28.70 19.24 43.87 4.79
219 220 1.466856 TGTATAGCTTGGACGTCCGT 58.533 50.000 28.70 15.74 39.43 4.69
220 221 2.572191 TTGTATAGCTTGGACGTCCG 57.428 50.000 28.70 16.96 39.43 4.79
221 222 3.131396 CCATTGTATAGCTTGGACGTCC 58.869 50.000 28.17 28.17 0.00 4.79
222 223 4.054780 TCCATTGTATAGCTTGGACGTC 57.945 45.455 7.13 7.13 33.40 4.34
223 224 4.689612 ATCCATTGTATAGCTTGGACGT 57.310 40.909 4.69 0.00 40.87 4.34
224 225 4.452455 GGAATCCATTGTATAGCTTGGACG 59.548 45.833 4.69 0.00 40.87 4.79
225 226 5.376625 TGGAATCCATTGTATAGCTTGGAC 58.623 41.667 4.69 0.00 40.87 4.02
226 227 5.645056 TGGAATCCATTGTATAGCTTGGA 57.355 39.130 5.06 5.06 42.18 3.53
227 228 6.096705 TGTTTGGAATCCATTGTATAGCTTGG 59.903 38.462 1.39 0.00 31.53 3.61
228 229 7.099266 TGTTTGGAATCCATTGTATAGCTTG 57.901 36.000 1.39 0.00 31.53 4.01
229 230 7.716799 TTGTTTGGAATCCATTGTATAGCTT 57.283 32.000 1.39 0.00 31.53 3.74
230 231 7.902920 ATTGTTTGGAATCCATTGTATAGCT 57.097 32.000 1.39 0.00 31.53 3.32
231 232 9.066892 TCTATTGTTTGGAATCCATTGTATAGC 57.933 33.333 1.39 0.00 31.53 2.97
234 235 9.699410 TTCTCTATTGTTTGGAATCCATTGTAT 57.301 29.630 1.39 0.00 31.53 2.29
235 236 9.527157 TTTCTCTATTGTTTGGAATCCATTGTA 57.473 29.630 1.39 0.00 31.53 2.41
236 237 8.421249 TTTCTCTATTGTTTGGAATCCATTGT 57.579 30.769 1.39 0.00 31.53 2.71
237 238 9.309516 CATTTCTCTATTGTTTGGAATCCATTG 57.690 33.333 1.39 0.00 31.53 2.82
238 239 8.480501 CCATTTCTCTATTGTTTGGAATCCATT 58.519 33.333 1.39 0.00 31.53 3.16
239 240 7.840716 TCCATTTCTCTATTGTTTGGAATCCAT 59.159 33.333 1.39 0.00 31.53 3.41
240 241 7.181361 TCCATTTCTCTATTGTTTGGAATCCA 58.819 34.615 0.00 0.00 0.00 3.41
241 242 7.645058 TCCATTTCTCTATTGTTTGGAATCC 57.355 36.000 0.00 0.00 0.00 3.01
242 243 8.960591 TCTTCCATTTCTCTATTGTTTGGAATC 58.039 33.333 0.00 0.00 40.07 2.52
243 244 8.884124 TCTTCCATTTCTCTATTGTTTGGAAT 57.116 30.769 0.00 0.00 40.07 3.01
244 245 8.742777 CATCTTCCATTTCTCTATTGTTTGGAA 58.257 33.333 0.00 0.00 38.94 3.53
245 246 7.890127 ACATCTTCCATTTCTCTATTGTTTGGA 59.110 33.333 0.00 0.00 0.00 3.53
246 247 8.059798 ACATCTTCCATTTCTCTATTGTTTGG 57.940 34.615 0.00 0.00 0.00 3.28
247 248 8.954350 AGACATCTTCCATTTCTCTATTGTTTG 58.046 33.333 0.00 0.00 0.00 2.93
249 250 9.829507 CTAGACATCTTCCATTTCTCTATTGTT 57.170 33.333 0.00 0.00 0.00 2.83
250 251 8.428063 CCTAGACATCTTCCATTTCTCTATTGT 58.572 37.037 0.00 0.00 0.00 2.71
251 252 7.387397 GCCTAGACATCTTCCATTTCTCTATTG 59.613 40.741 0.00 0.00 0.00 1.90
252 253 7.071698 TGCCTAGACATCTTCCATTTCTCTATT 59.928 37.037 0.00 0.00 0.00 1.73
253 254 6.556495 TGCCTAGACATCTTCCATTTCTCTAT 59.444 38.462 0.00 0.00 0.00 1.98
254 255 5.899547 TGCCTAGACATCTTCCATTTCTCTA 59.100 40.000 0.00 0.00 0.00 2.43
255 256 4.718774 TGCCTAGACATCTTCCATTTCTCT 59.281 41.667 0.00 0.00 0.00 3.10
256 257 5.028549 TGCCTAGACATCTTCCATTTCTC 57.971 43.478 0.00 0.00 0.00 2.87
257 258 5.374921 CATGCCTAGACATCTTCCATTTCT 58.625 41.667 0.00 0.00 0.00 2.52
258 259 4.518211 CCATGCCTAGACATCTTCCATTTC 59.482 45.833 0.00 0.00 0.00 2.17
259 260 4.467769 CCATGCCTAGACATCTTCCATTT 58.532 43.478 0.00 0.00 0.00 2.32
260 261 3.749954 GCCATGCCTAGACATCTTCCATT 60.750 47.826 0.00 0.00 0.00 3.16
261 262 2.224719 GCCATGCCTAGACATCTTCCAT 60.225 50.000 0.00 0.00 0.00 3.41
262 263 1.141657 GCCATGCCTAGACATCTTCCA 59.858 52.381 0.00 0.00 0.00 3.53
263 264 1.141657 TGCCATGCCTAGACATCTTCC 59.858 52.381 0.00 0.00 0.00 3.46
264 265 2.615912 GTTGCCATGCCTAGACATCTTC 59.384 50.000 0.00 0.00 0.00 2.87
265 266 2.648059 GTTGCCATGCCTAGACATCTT 58.352 47.619 0.00 0.00 0.00 2.40
266 267 1.133976 GGTTGCCATGCCTAGACATCT 60.134 52.381 0.00 0.00 0.00 2.90
267 268 1.312815 GGTTGCCATGCCTAGACATC 58.687 55.000 0.00 0.00 0.00 3.06
268 269 0.106519 GGGTTGCCATGCCTAGACAT 60.107 55.000 0.00 0.00 0.00 3.06
269 270 1.302949 GGGTTGCCATGCCTAGACA 59.697 57.895 0.00 0.00 0.00 3.41
270 271 1.819632 CGGGTTGCCATGCCTAGAC 60.820 63.158 0.00 0.00 0.00 2.59
271 272 1.558167 TTCGGGTTGCCATGCCTAGA 61.558 55.000 0.00 0.00 0.00 2.43
272 273 0.679640 TTTCGGGTTGCCATGCCTAG 60.680 55.000 0.00 0.00 0.00 3.02
273 274 0.251386 TTTTCGGGTTGCCATGCCTA 60.251 50.000 0.00 0.00 0.00 3.93
274 275 1.532794 TTTTCGGGTTGCCATGCCT 60.533 52.632 0.00 0.00 0.00 4.75
275 276 1.079888 CTTTTCGGGTTGCCATGCC 60.080 57.895 0.00 0.00 0.00 4.40
276 277 0.033366 AACTTTTCGGGTTGCCATGC 59.967 50.000 0.00 0.00 0.00 4.06
277 278 1.605202 CCAACTTTTCGGGTTGCCATG 60.605 52.381 0.00 0.00 41.64 3.66
278 279 0.678950 CCAACTTTTCGGGTTGCCAT 59.321 50.000 0.00 0.00 41.64 4.40
279 280 1.395826 CCCAACTTTTCGGGTTGCCA 61.396 55.000 0.00 0.00 41.64 4.92
280 281 1.365999 CCCAACTTTTCGGGTTGCC 59.634 57.895 0.00 0.00 41.64 4.52
281 282 1.300620 GCCCAACTTTTCGGGTTGC 60.301 57.895 0.00 0.00 45.07 4.17
282 283 0.750249 AAGCCCAACTTTTCGGGTTG 59.250 50.000 0.00 0.00 45.07 3.77
283 284 1.037493 GAAGCCCAACTTTTCGGGTT 58.963 50.000 0.00 0.00 45.07 4.11
284 285 0.185175 AGAAGCCCAACTTTTCGGGT 59.815 50.000 0.00 0.00 45.07 5.28
285 286 1.269723 GAAGAAGCCCAACTTTTCGGG 59.730 52.381 0.00 0.00 46.15 5.14
286 287 2.226674 GAGAAGAAGCCCAACTTTTCGG 59.773 50.000 0.00 0.00 39.29 4.30
287 288 2.096218 CGAGAAGAAGCCCAACTTTTCG 60.096 50.000 0.00 0.00 41.50 3.46
288 289 2.226674 CCGAGAAGAAGCCCAACTTTTC 59.773 50.000 0.00 0.00 39.29 2.29
289 290 2.230660 CCGAGAAGAAGCCCAACTTTT 58.769 47.619 0.00 0.00 39.29 2.27
290 291 1.143073 ACCGAGAAGAAGCCCAACTTT 59.857 47.619 0.00 0.00 39.29 2.66
291 292 0.765510 ACCGAGAAGAAGCCCAACTT 59.234 50.000 0.00 0.00 42.98 2.66
292 293 0.765510 AACCGAGAAGAAGCCCAACT 59.234 50.000 0.00 0.00 0.00 3.16
293 294 2.347731 CTAACCGAGAAGAAGCCCAAC 58.652 52.381 0.00 0.00 0.00 3.77
294 295 1.278127 CCTAACCGAGAAGAAGCCCAA 59.722 52.381 0.00 0.00 0.00 4.12
295 296 0.902531 CCTAACCGAGAAGAAGCCCA 59.097 55.000 0.00 0.00 0.00 5.36
296 297 0.903236 ACCTAACCGAGAAGAAGCCC 59.097 55.000 0.00 0.00 0.00 5.19
297 298 2.007547 GCACCTAACCGAGAAGAAGCC 61.008 57.143 0.00 0.00 0.00 4.35
298 299 1.337823 TGCACCTAACCGAGAAGAAGC 60.338 52.381 0.00 0.00 0.00 3.86
299 300 2.743636 TGCACCTAACCGAGAAGAAG 57.256 50.000 0.00 0.00 0.00 2.85
300 301 2.565391 TGATGCACCTAACCGAGAAGAA 59.435 45.455 0.00 0.00 0.00 2.52
301 302 2.176045 TGATGCACCTAACCGAGAAGA 58.824 47.619 0.00 0.00 0.00 2.87
302 303 2.672961 TGATGCACCTAACCGAGAAG 57.327 50.000 0.00 0.00 0.00 2.85
303 304 2.037902 TGTTGATGCACCTAACCGAGAA 59.962 45.455 0.00 0.00 0.00 2.87
304 305 1.621317 TGTTGATGCACCTAACCGAGA 59.379 47.619 0.00 0.00 0.00 4.04
305 306 2.093306 TGTTGATGCACCTAACCGAG 57.907 50.000 0.00 0.00 0.00 4.63
306 307 2.627945 GATGTTGATGCACCTAACCGA 58.372 47.619 0.00 0.00 0.00 4.69
307 308 1.327460 CGATGTTGATGCACCTAACCG 59.673 52.381 0.00 0.00 0.00 4.44
308 309 2.627945 TCGATGTTGATGCACCTAACC 58.372 47.619 0.00 0.00 0.00 2.85
309 310 3.060272 CGATCGATGTTGATGCACCTAAC 60.060 47.826 10.26 0.00 0.00 2.34
310 311 3.123050 CGATCGATGTTGATGCACCTAA 58.877 45.455 10.26 0.00 0.00 2.69
311 312 2.360801 TCGATCGATGTTGATGCACCTA 59.639 45.455 15.15 0.00 0.00 3.08
312 313 1.136891 TCGATCGATGTTGATGCACCT 59.863 47.619 15.15 0.00 0.00 4.00
313 314 1.258982 GTCGATCGATGTTGATGCACC 59.741 52.381 22.50 0.00 0.00 5.01
314 315 2.196749 AGTCGATCGATGTTGATGCAC 58.803 47.619 22.50 4.57 0.00 4.57
315 316 2.159254 TGAGTCGATCGATGTTGATGCA 60.159 45.455 22.50 7.89 0.00 3.96
316 317 2.463876 TGAGTCGATCGATGTTGATGC 58.536 47.619 22.50 5.50 0.00 3.91
317 318 3.859386 TGTTGAGTCGATCGATGTTGATG 59.141 43.478 22.50 0.00 0.00 3.07
318 319 4.110036 TGTTGAGTCGATCGATGTTGAT 57.890 40.909 22.50 3.45 0.00 2.57
319 320 3.569250 TGTTGAGTCGATCGATGTTGA 57.431 42.857 22.50 4.14 0.00 3.18
320 321 3.482598 GCTTGTTGAGTCGATCGATGTTG 60.483 47.826 22.50 7.65 0.00 3.33
321 322 2.668457 GCTTGTTGAGTCGATCGATGTT 59.332 45.455 22.50 10.21 0.00 2.71
322 323 2.094494 AGCTTGTTGAGTCGATCGATGT 60.094 45.455 22.50 11.99 0.00 3.06
323 324 2.534298 AGCTTGTTGAGTCGATCGATG 58.466 47.619 22.50 5.69 0.00 3.84
324 325 2.949451 AGCTTGTTGAGTCGATCGAT 57.051 45.000 22.50 10.34 0.00 3.59
325 326 2.030274 TGAAGCTTGTTGAGTCGATCGA 60.030 45.455 15.15 15.15 0.00 3.59
326 327 2.328473 TGAAGCTTGTTGAGTCGATCG 58.672 47.619 9.36 9.36 0.00 3.69
327 328 3.681897 ACATGAAGCTTGTTGAGTCGATC 59.318 43.478 2.10 0.00 0.00 3.69
328 329 3.668447 ACATGAAGCTTGTTGAGTCGAT 58.332 40.909 2.10 0.00 0.00 3.59
329 330 3.111853 ACATGAAGCTTGTTGAGTCGA 57.888 42.857 2.10 0.00 0.00 4.20
330 331 3.496130 AGAACATGAAGCTTGTTGAGTCG 59.504 43.478 2.10 0.00 37.43 4.18
331 332 4.512944 TGAGAACATGAAGCTTGTTGAGTC 59.487 41.667 2.10 4.88 37.43 3.36
332 333 4.454678 TGAGAACATGAAGCTTGTTGAGT 58.545 39.130 2.10 0.00 37.43 3.41
333 334 5.624344 ATGAGAACATGAAGCTTGTTGAG 57.376 39.130 2.10 0.00 37.43 3.02
346 347 7.219484 AGATTTTTCGTTTCCATGAGAACAT 57.781 32.000 0.00 0.00 37.19 2.71
347 348 6.633500 AGATTTTTCGTTTCCATGAGAACA 57.367 33.333 0.00 0.00 32.95 3.18
348 349 9.626045 ATTAAGATTTTTCGTTTCCATGAGAAC 57.374 29.630 0.00 0.00 32.95 3.01
349 350 9.624697 CATTAAGATTTTTCGTTTCCATGAGAA 57.375 29.630 0.00 0.00 0.00 2.87
350 351 8.243426 CCATTAAGATTTTTCGTTTCCATGAGA 58.757 33.333 0.00 0.00 0.00 3.27
351 352 8.243426 TCCATTAAGATTTTTCGTTTCCATGAG 58.757 33.333 0.00 0.00 0.00 2.90
352 353 8.116651 TCCATTAAGATTTTTCGTTTCCATGA 57.883 30.769 0.00 0.00 0.00 3.07
353 354 8.755696 TTCCATTAAGATTTTTCGTTTCCATG 57.244 30.769 0.00 0.00 0.00 3.66
354 355 9.771534 TTTTCCATTAAGATTTTTCGTTTCCAT 57.228 25.926 0.00 0.00 0.00 3.41
355 356 9.601217 TTTTTCCATTAAGATTTTTCGTTTCCA 57.399 25.926 0.00 0.00 0.00 3.53
388 389 4.223255 ACTTTAGGAGGTACAGGAAGCTTC 59.777 45.833 18.54 18.54 0.00 3.86
389 390 4.168883 ACTTTAGGAGGTACAGGAAGCTT 58.831 43.478 0.00 0.00 0.00 3.74
390 391 3.770388 GACTTTAGGAGGTACAGGAAGCT 59.230 47.826 0.00 0.00 0.00 3.74
391 392 3.118702 GGACTTTAGGAGGTACAGGAAGC 60.119 52.174 0.00 0.00 0.00 3.86
392 393 3.130693 CGGACTTTAGGAGGTACAGGAAG 59.869 52.174 0.00 0.00 0.00 3.46
393 394 3.094572 CGGACTTTAGGAGGTACAGGAA 58.905 50.000 0.00 0.00 0.00 3.36
394 395 2.731572 CGGACTTTAGGAGGTACAGGA 58.268 52.381 0.00 0.00 0.00 3.86
395 396 1.136500 GCGGACTTTAGGAGGTACAGG 59.864 57.143 0.00 0.00 0.00 4.00
396 397 1.822990 TGCGGACTTTAGGAGGTACAG 59.177 52.381 0.00 0.00 0.00 2.74
397 398 1.927487 TGCGGACTTTAGGAGGTACA 58.073 50.000 0.00 0.00 0.00 2.90
398 399 3.538634 ATTGCGGACTTTAGGAGGTAC 57.461 47.619 0.00 0.00 0.00 3.34
399 400 4.563140 AAATTGCGGACTTTAGGAGGTA 57.437 40.909 0.00 0.00 0.00 3.08
400 401 3.434940 AAATTGCGGACTTTAGGAGGT 57.565 42.857 0.00 0.00 0.00 3.85
401 402 4.485163 CAAAAATTGCGGACTTTAGGAGG 58.515 43.478 0.00 0.00 0.00 4.30
402 403 4.022329 ACCAAAAATTGCGGACTTTAGGAG 60.022 41.667 14.60 0.04 0.00 3.69
403 404 3.892588 ACCAAAAATTGCGGACTTTAGGA 59.107 39.130 14.60 0.00 0.00 2.94
404 405 3.987220 CACCAAAAATTGCGGACTTTAGG 59.013 43.478 8.73 8.73 0.00 2.69
405 406 3.987220 CCACCAAAAATTGCGGACTTTAG 59.013 43.478 0.00 0.00 0.00 1.85
406 407 3.637229 TCCACCAAAAATTGCGGACTTTA 59.363 39.130 0.00 0.00 0.00 1.85
407 408 2.432510 TCCACCAAAAATTGCGGACTTT 59.567 40.909 0.00 0.00 0.00 2.66
408 409 2.035632 TCCACCAAAAATTGCGGACTT 58.964 42.857 0.00 0.00 0.00 3.01
409 410 1.613437 CTCCACCAAAAATTGCGGACT 59.387 47.619 0.00 0.00 30.48 3.85
410 411 1.611491 TCTCCACCAAAAATTGCGGAC 59.389 47.619 0.00 0.00 30.48 4.79
411 412 1.885887 CTCTCCACCAAAAATTGCGGA 59.114 47.619 0.00 0.00 32.10 5.54
412 413 1.613437 ACTCTCCACCAAAAATTGCGG 59.387 47.619 0.00 0.00 0.00 5.69
413 414 2.293122 TCACTCTCCACCAAAAATTGCG 59.707 45.455 0.00 0.00 0.00 4.85
414 415 4.022068 TGATCACTCTCCACCAAAAATTGC 60.022 41.667 0.00 0.00 0.00 3.56
415 416 5.710513 TGATCACTCTCCACCAAAAATTG 57.289 39.130 0.00 0.00 0.00 2.32
416 417 5.598005 TGTTGATCACTCTCCACCAAAAATT 59.402 36.000 0.00 0.00 0.00 1.82
417 418 5.139727 TGTTGATCACTCTCCACCAAAAAT 58.860 37.500 0.00 0.00 0.00 1.82
418 419 4.531854 TGTTGATCACTCTCCACCAAAAA 58.468 39.130 0.00 0.00 0.00 1.94
419 420 4.163441 TGTTGATCACTCTCCACCAAAA 57.837 40.909 0.00 0.00 0.00 2.44
420 421 3.855255 TGTTGATCACTCTCCACCAAA 57.145 42.857 0.00 0.00 0.00 3.28
421 422 3.855255 TTGTTGATCACTCTCCACCAA 57.145 42.857 0.00 0.00 0.00 3.67
422 423 3.855255 TTTGTTGATCACTCTCCACCA 57.145 42.857 0.00 0.00 0.00 4.17
423 424 4.142816 CGAATTTGTTGATCACTCTCCACC 60.143 45.833 0.00 0.00 0.00 4.61
424 425 4.452455 ACGAATTTGTTGATCACTCTCCAC 59.548 41.667 0.00 0.00 0.00 4.02
425 426 4.641396 ACGAATTTGTTGATCACTCTCCA 58.359 39.130 0.00 0.00 0.00 3.86
426 427 5.409826 AGAACGAATTTGTTGATCACTCTCC 59.590 40.000 15.94 0.00 30.75 3.71
427 428 6.146184 TCAGAACGAATTTGTTGATCACTCTC 59.854 38.462 15.94 0.00 30.75 3.20
428 429 5.991606 TCAGAACGAATTTGTTGATCACTCT 59.008 36.000 15.94 2.18 30.75 3.24
429 430 6.073548 AGTCAGAACGAATTTGTTGATCACTC 60.074 38.462 15.94 0.00 30.75 3.51
430 431 5.760253 AGTCAGAACGAATTTGTTGATCACT 59.240 36.000 15.94 8.95 30.75 3.41
431 432 5.990408 AGTCAGAACGAATTTGTTGATCAC 58.010 37.500 15.94 7.02 30.75 3.06
432 433 7.905604 ATAGTCAGAACGAATTTGTTGATCA 57.094 32.000 15.94 0.00 30.75 2.92
434 435 9.823647 AGATATAGTCAGAACGAATTTGTTGAT 57.176 29.630 15.94 1.67 30.75 2.57
435 436 9.087424 CAGATATAGTCAGAACGAATTTGTTGA 57.913 33.333 15.94 5.98 30.75 3.18
436 437 8.873830 ACAGATATAGTCAGAACGAATTTGTTG 58.126 33.333 15.94 3.56 30.75 3.33
437 438 9.436957 AACAGATATAGTCAGAACGAATTTGTT 57.563 29.630 10.97 10.97 34.02 2.83
441 442 9.953697 GTCTAACAGATATAGTCAGAACGAATT 57.046 33.333 0.00 0.00 0.00 2.17
442 443 9.344772 AGTCTAACAGATATAGTCAGAACGAAT 57.655 33.333 0.00 0.00 0.00 3.34
443 444 8.734218 AGTCTAACAGATATAGTCAGAACGAA 57.266 34.615 0.00 0.00 0.00 3.85
444 445 9.828039 TTAGTCTAACAGATATAGTCAGAACGA 57.172 33.333 0.00 0.00 0.00 3.85
515 522 1.074775 AGGGCATGCGGTTTCAGAA 59.925 52.632 12.44 0.00 0.00 3.02
866 884 0.179073 CATAGGCGAGGAAGTGGTGG 60.179 60.000 0.00 0.00 0.00 4.61
965 985 6.199393 GTTTTCCACTTGTGATAGTTGTGAC 58.801 40.000 1.89 0.00 0.00 3.67
1014 1036 1.308069 TGAGGTAGGTGACGCCGTAC 61.308 60.000 0.00 3.15 43.70 3.67
1109 1132 1.078528 ATGGTGTCGGAGAGGGTGA 59.921 57.895 0.00 0.00 36.95 4.02
1264 1287 4.609247 GCGCGCGTACTCGGAGAT 62.609 66.667 32.35 0.00 37.56 2.75
1365 1388 2.740447 GGTTTCAAGCCGTTTATCGAGT 59.260 45.455 0.00 0.00 42.86 4.18
1554 3311 0.322726 CACCACCATGATCACCAGCA 60.323 55.000 0.00 0.00 0.00 4.41
1727 3529 3.934391 GAGAAGGGTGGGTGCGACG 62.934 68.421 0.00 0.00 0.00 5.12
1895 3701 4.519437 GTGGCGGGTAGTACGGGC 62.519 72.222 8.91 8.91 36.89 6.13
2130 3939 2.376109 TGCGGGGAAAGAGTAGTAGAG 58.624 52.381 0.00 0.00 0.00 2.43
2186 3999 3.377485 TGAGATAAGGCTAGTGACGACAC 59.623 47.826 10.10 10.10 46.24 3.67
2253 4066 3.636300 CCTTCACAAGAAAACCACATGGA 59.364 43.478 4.53 0.00 34.38 3.41
2325 4138 0.178973 GGTGCCAACAAAGGGGTAGT 60.179 55.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.