Multiple sequence alignment - TraesCS5B01G115600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G115600 chr5B 100.000 8633 0 0 1 8633 194182753 194191385 0.000000e+00 15943.0
1 TraesCS5B01G115600 chr5B 96.863 542 16 1 178 719 182436201 182436741 0.000000e+00 905.0
2 TraesCS5B01G115600 chr5B 96.533 548 18 1 178 725 537908745 537908199 0.000000e+00 905.0
3 TraesCS5B01G115600 chr5B 96.357 549 20 0 178 726 439437442 439437990 0.000000e+00 904.0
4 TraesCS5B01G115600 chr5B 96.845 317 10 0 723 1039 194172826 194173142 1.650000e-146 531.0
5 TraesCS5B01G115600 chr5B 93.678 174 10 1 1862 2035 682639210 682639038 8.600000e-65 259.0
6 TraesCS5B01G115600 chr5B 89.888 178 16 2 2223 2399 129721773 129721949 2.420000e-55 228.0
7 TraesCS5B01G115600 chr5B 90.476 84 8 0 8288 8371 650345375 650345292 2.550000e-20 111.0
8 TraesCS5B01G115600 chr5B 88.462 78 6 2 8171 8246 711245602 711245678 3.320000e-14 91.6
9 TraesCS5B01G115600 chr5B 100.000 33 0 0 723 755 18073096 18073128 2.600000e-05 62.1
10 TraesCS5B01G115600 chr5A 95.895 6188 157 24 2032 8176 206730736 206724603 0.000000e+00 9930.0
11 TraesCS5B01G115600 chr5A 96.017 954 20 6 762 1705 206732083 206731138 0.000000e+00 1535.0
12 TraesCS5B01G115600 chr5A 96.344 547 19 1 178 724 671483301 671483846 0.000000e+00 898.0
13 TraesCS5B01G115600 chr5A 96.082 536 20 1 7641 8176 206719309 206718775 0.000000e+00 872.0
14 TraesCS5B01G115600 chr5A 97.080 274 8 0 8360 8633 206718695 206718422 6.110000e-126 462.0
15 TraesCS5B01G115600 chr5A 97.080 274 8 0 8360 8633 206724523 206724250 6.110000e-126 462.0
16 TraesCS5B01G115600 chr5A 92.638 163 12 0 2232 2394 320214243 320214405 1.450000e-57 235.0
17 TraesCS5B01G115600 chr5A 93.125 160 11 0 2239 2398 653299595 653299436 1.450000e-57 235.0
18 TraesCS5B01G115600 chr5A 94.574 129 7 0 1733 1861 206730853 206730725 5.290000e-47 200.0
19 TraesCS5B01G115600 chr5A 93.671 79 5 0 1783 1861 408191722 408191644 1.520000e-22 119.0
20 TraesCS5B01G115600 chr5A 90.476 84 8 0 8285 8368 573592702 573592785 2.550000e-20 111.0
21 TraesCS5B01G115600 chr5A 85.849 106 11 4 1757 1861 320214434 320214332 9.160000e-20 110.0
22 TraesCS5B01G115600 chr5D 94.875 3512 95 19 4630 8099 150832984 150829516 0.000000e+00 5409.0
23 TraesCS5B01G115600 chr5D 96.938 2613 56 14 2032 4631 150835667 150833066 0.000000e+00 4361.0
24 TraesCS5B01G115600 chr5D 96.820 849 17 5 759 1599 150836643 150835797 0.000000e+00 1410.0
25 TraesCS5B01G115600 chr5D 97.384 344 8 1 7943 8286 150829520 150829178 1.250000e-162 584.0
26 TraesCS5B01G115600 chr5D 94.690 226 11 1 8360 8585 150829178 150828954 4.960000e-92 350.0
27 TraesCS5B01G115600 chr5D 97.163 141 4 0 1721 1861 150835796 150835656 1.120000e-58 239.0
28 TraesCS5B01G115600 chr5D 93.377 151 10 0 2244 2394 97073860 97073710 3.140000e-54 224.0
29 TraesCS5B01G115600 chr5D 94.937 79 4 0 1783 1861 314422156 314422078 3.270000e-24 124.0
30 TraesCS5B01G115600 chr5D 94.737 76 4 0 1786 1861 461072765 461072690 1.520000e-22 119.0
31 TraesCS5B01G115600 chr5D 94.595 74 4 0 8288 8361 169535170 169535243 1.970000e-21 115.0
32 TraesCS5B01G115600 chr5D 94.595 74 4 0 1788 1861 345933887 345933814 1.970000e-21 115.0
33 TraesCS5B01G115600 chr5D 86.139 101 5 5 8128 8226 278465018 278465111 5.510000e-17 100.0
34 TraesCS5B01G115600 chr5D 84.259 108 8 5 8133 8238 278465109 278465009 7.130000e-16 97.1
35 TraesCS5B01G115600 chr5D 96.429 56 2 0 8121 8176 339760792 339760847 9.230000e-15 93.5
36 TraesCS5B01G115600 chr5D 86.842 76 3 2 8565 8633 150825497 150825422 2.580000e-10 78.7
37 TraesCS5B01G115600 chr5D 83.333 84 4 2 8288 8361 7053490 7053407 1.560000e-07 69.4
38 TraesCS5B01G115600 chr5D 81.000 100 7 4 8288 8376 425034885 425034983 1.560000e-07 69.4
39 TraesCS5B01G115600 chr5D 80.412 97 9 1 8282 8368 395175833 395175929 2.010000e-06 65.8
40 TraesCS5B01G115600 chr3A 95.528 738 18 5 1 723 574471042 574471779 0.000000e+00 1166.0
41 TraesCS5B01G115600 chr3A 96.875 544 17 0 178 721 574470688 574471231 0.000000e+00 911.0
42 TraesCS5B01G115600 chr3A 96.175 549 19 1 178 724 340248876 340248328 0.000000e+00 896.0
43 TraesCS5B01G115600 chr3A 93.103 174 12 0 1862 2035 621731157 621731330 1.110000e-63 255.0
44 TraesCS5B01G115600 chr3A 92.638 163 12 0 2239 2401 585298136 585297974 1.450000e-57 235.0
45 TraesCS5B01G115600 chr3A 100.000 33 0 0 723 755 606520023 606519991 2.600000e-05 62.1
46 TraesCS5B01G115600 chr3A 100.000 33 0 0 723 755 693110992 693111024 2.600000e-05 62.1
47 TraesCS5B01G115600 chr1B 95.399 739 20 6 3 728 338298769 338299506 0.000000e+00 1164.0
48 TraesCS5B01G115600 chr1B 93.678 174 10 1 1862 2035 605823933 605823761 8.600000e-65 259.0
49 TraesCS5B01G115600 chr1B 91.124 169 14 1 2226 2394 314565532 314565699 2.420000e-55 228.0
50 TraesCS5B01G115600 chr1B 95.000 100 5 0 2032 2131 525901972 525901873 3.230000e-34 158.0
51 TraesCS5B01G115600 chr1B 96.000 75 3 0 1787 1861 67537603 67537529 1.180000e-23 122.0
52 TraesCS5B01G115600 chr1B 94.737 76 2 1 8288 8361 579792167 579792242 5.480000e-22 117.0
53 TraesCS5B01G115600 chr1B 91.667 84 5 1 8288 8369 579792240 579792157 1.970000e-21 115.0
54 TraesCS5B01G115600 chr1B 96.875 64 2 0 1373 1436 286071309 286071246 3.300000e-19 108.0
55 TraesCS5B01G115600 chr3B 96.527 547 19 0 178 724 442472510 442471964 0.000000e+00 905.0
56 TraesCS5B01G115600 chr3B 90.351 114 10 1 2032 2145 654649773 654649885 1.940000e-31 148.0
57 TraesCS5B01G115600 chr3B 85.567 97 11 2 8124 8217 698618239 698618335 1.980000e-16 99.0
58 TraesCS5B01G115600 chr1A 97.191 178 4 1 1 177 571888008 571887831 5.070000e-77 300.0
59 TraesCS5B01G115600 chr1A 96.629 178 5 1 1 177 579985383 579985560 2.360000e-75 294.0
60 TraesCS5B01G115600 chr1A 95.506 178 4 2 1 177 579988006 579988180 1.830000e-71 281.0
61 TraesCS5B01G115600 chr1A 92.994 157 11 0 2239 2395 39438993 39438837 6.740000e-56 230.0
62 TraesCS5B01G115600 chr1A 89.831 177 16 2 2225 2400 181769420 181769595 8.720000e-55 226.0
63 TraesCS5B01G115600 chr1A 80.916 131 20 4 2032 2160 293742200 293742073 1.980000e-16 99.0
64 TraesCS5B01G115600 chr1A 87.952 83 6 2 8288 8366 494743908 494743826 2.570000e-15 95.3
65 TraesCS5B01G115600 chr1A 90.278 72 5 2 8171 8240 550607277 550607348 9.230000e-15 93.5
66 TraesCS5B01G115600 chr1A 90.625 64 6 0 8114 8177 588664852 588664915 1.540000e-12 86.1
67 TraesCS5B01G115600 chr6A 96.629 178 4 2 1 177 111538701 111538877 2.360000e-75 294.0
68 TraesCS5B01G115600 chr6A 96.610 177 3 1 1 177 577742040 577741867 3.050000e-74 291.0
69 TraesCS5B01G115600 chr6A 96.067 178 3 2 1 177 577739866 577739692 3.940000e-73 287.0
70 TraesCS5B01G115600 chr6A 95.364 151 7 0 2244 2394 91902417 91902567 3.110000e-59 241.0
71 TraesCS5B01G115600 chr6A 91.781 73 4 1 8171 8241 190687634 190687706 5.510000e-17 100.0
72 TraesCS5B01G115600 chr7B 96.067 178 5 2 1 177 364245492 364245668 1.100000e-73 289.0
73 TraesCS5B01G115600 chr7B 96.045 177 4 1 1 177 749704611 749704784 1.420000e-72 285.0
74 TraesCS5B01G115600 chr7B 88.235 187 20 2 2222 2407 176002820 176003005 1.130000e-53 222.0
75 TraesCS5B01G115600 chr7B 96.875 32 1 0 5149 5180 744641669 744641700 4.000000e-03 54.7
76 TraesCS5B01G115600 chr2B 96.067 178 3 2 1 177 284938965 284939139 3.940000e-73 287.0
77 TraesCS5B01G115600 chr2B 98.089 157 3 0 1862 2018 415057862 415057706 3.070000e-69 274.0
78 TraesCS5B01G115600 chr2B 95.000 100 5 0 2032 2131 109974376 109974475 3.230000e-34 158.0
79 TraesCS5B01G115600 chr2B 94.118 68 1 2 8171 8235 9622803 9622870 5.510000e-17 100.0
80 TraesCS5B01G115600 chr2D 93.678 174 11 0 1862 2035 525380215 525380042 2.390000e-65 261.0
81 TraesCS5B01G115600 chr2D 93.678 174 10 1 1862 2035 218173804 218173632 8.600000e-65 259.0
82 TraesCS5B01G115600 chr2D 93.678 174 10 1 1862 2035 519015595 519015767 8.600000e-65 259.0
83 TraesCS5B01G115600 chr2D 96.053 76 3 0 1786 1861 593512486 593512561 3.270000e-24 124.0
84 TraesCS5B01G115600 chr2D 90.361 83 8 0 8279 8361 379701719 379701801 9.160000e-20 110.0
85 TraesCS5B01G115600 chr2D 90.141 71 3 3 8110 8177 8281247 8281178 1.190000e-13 89.8
86 TraesCS5B01G115600 chr2D 84.615 91 4 1 8284 8364 503441221 503441311 2.000000e-11 82.4
87 TraesCS5B01G115600 chr1D 93.678 174 11 0 1862 2035 164539997 164540170 2.390000e-65 261.0
88 TraesCS5B01G115600 chr1D 91.566 166 12 2 2232 2397 387944942 387944779 2.420000e-55 228.0
89 TraesCS5B01G115600 chr1D 90.000 170 17 0 2225 2394 463381897 463382066 4.060000e-53 220.0
90 TraesCS5B01G115600 chr1D 89.941 169 16 1 2229 2397 246647411 246647244 5.250000e-52 217.0
91 TraesCS5B01G115600 chr1D 90.184 163 16 0 2232 2394 46634453 46634615 6.790000e-51 213.0
92 TraesCS5B01G115600 chr1D 89.349 169 18 0 2226 2394 219479772 219479940 6.790000e-51 213.0
93 TraesCS5B01G115600 chr1D 89.881 168 14 3 2229 2395 463470768 463470933 6.790000e-51 213.0
94 TraesCS5B01G115600 chr1D 88.953 172 18 1 2230 2400 445061607 445061778 2.440000e-50 211.0
95 TraesCS5B01G115600 chr1D 91.304 92 5 3 1772 1861 103408896 103408806 1.180000e-23 122.0
96 TraesCS5B01G115600 chr1D 92.683 82 4 2 1781 1861 115040071 115040151 5.480000e-22 117.0
97 TraesCS5B01G115600 chr1D 90.698 86 7 1 1777 1861 46634627 46634542 7.080000e-21 113.0
98 TraesCS5B01G115600 chr1D 92.405 79 4 2 1784 1861 137486476 137486553 2.550000e-20 111.0
99 TraesCS5B01G115600 chr1D 88.889 90 10 0 1773 1862 402329902 402329991 2.550000e-20 111.0
100 TraesCS5B01G115600 chr1D 92.208 77 6 0 1785 1861 387944779 387944855 9.160000e-20 110.0
101 TraesCS5B01G115600 chr1D 94.030 67 2 1 8171 8235 58573648 58573714 5.510000e-17 100.0
102 TraesCS5B01G115600 chr1D 87.640 89 7 2 1778 1862 332928007 332927919 5.510000e-17 100.0
103 TraesCS5B01G115600 chr1D 93.750 64 2 1 8174 8235 42391782 42391719 2.570000e-15 95.3
104 TraesCS5B01G115600 chr1D 93.651 63 4 0 8174 8236 192584752 192584690 2.570000e-15 95.3
105 TraesCS5B01G115600 chr1D 98.113 53 1 0 8124 8176 279945334 279945282 9.230000e-15 93.5
106 TraesCS5B01G115600 chr1D 98.113 53 1 0 8124 8176 394271199 394271147 9.230000e-15 93.5
107 TraesCS5B01G115600 chr1D 91.304 69 4 1 8171 8237 422060013 422060081 9.230000e-15 93.5
108 TraesCS5B01G115600 chr1D 100.000 49 0 0 8128 8176 29891822 29891870 3.320000e-14 91.6
109 TraesCS5B01G115600 chr1D 81.739 115 16 2 8124 8236 61911137 61911248 3.320000e-14 91.6
110 TraesCS5B01G115600 chr1D 98.077 52 0 1 8125 8176 29919543 29919593 1.190000e-13 89.8
111 TraesCS5B01G115600 chr1D 96.226 53 2 0 8124 8176 42391801 42391749 4.290000e-13 87.9
112 TraesCS5B01G115600 chr1D 96.226 53 2 0 8124 8176 47948839 47948787 4.290000e-13 87.9
113 TraesCS5B01G115600 chr1D 89.855 69 5 2 8171 8237 85191531 85191599 4.290000e-13 87.9
114 TraesCS5B01G115600 chr1D 96.226 53 2 0 8124 8176 209139359 209139307 4.290000e-13 87.9
115 TraesCS5B01G115600 chr1D 89.855 69 5 2 8171 8237 296532027 296532095 4.290000e-13 87.9
116 TraesCS5B01G115600 chr1D 96.226 53 2 0 8124 8176 347215389 347215337 4.290000e-13 87.9
117 TraesCS5B01G115600 chr1D 87.059 85 1 1 8288 8362 474055674 474055590 4.290000e-13 87.9
118 TraesCS5B01G115600 chr1D 85.882 85 2 1 8288 8362 484391013 484390929 2.000000e-11 82.4
119 TraesCS5B01G115600 chr1D 93.878 49 2 1 8281 8328 332955115 332955067 1.200000e-08 73.1
120 TraesCS5B01G115600 chr1D 91.667 48 3 1 8284 8330 466023876 466023829 2.010000e-06 65.8
121 TraesCS5B01G115600 chr1D 100.000 28 0 0 5153 5180 500522 500495 1.600000e-02 52.8
122 TraesCS5B01G115600 chr6D 93.678 174 10 1 1862 2035 45767967 45767795 8.600000e-65 259.0
123 TraesCS5B01G115600 chr6D 92.593 162 11 1 2233 2394 431160668 431160828 1.870000e-56 231.0
124 TraesCS5B01G115600 chr6D 91.667 156 13 0 2239 2394 90112393 90112238 5.250000e-52 217.0
125 TraesCS5B01G115600 chr6D 89.412 170 18 0 2225 2394 438321726 438321895 1.890000e-51 215.0
126 TraesCS5B01G115600 chr6D 88.462 182 13 7 2230 2406 41542654 41542476 6.790000e-51 213.0
127 TraesCS5B01G115600 chr6D 84.967 153 20 3 8429 8579 38895048 38894897 1.500000e-32 152.0
128 TraesCS5B01G115600 chr6D 94.595 74 4 0 1788 1861 351233435 351233508 1.970000e-21 115.0
129 TraesCS5B01G115600 chr6D 93.421 76 3 2 1788 1861 36811842 36811767 2.550000e-20 111.0
130 TraesCS5B01G115600 chr6D 93.243 74 5 0 1788 1861 335991173 335991100 9.160000e-20 110.0
131 TraesCS5B01G115600 chr6D 96.875 64 2 0 1373 1436 57911721 57911658 3.300000e-19 108.0
132 TraesCS5B01G115600 chr6D 98.333 60 1 0 1377 1436 27514447 27514388 1.190000e-18 106.0
133 TraesCS5B01G115600 chr6D 95.238 63 1 1 8177 8237 65054626 65054564 1.980000e-16 99.0
134 TraesCS5B01G115600 chr6D 96.429 56 2 0 8121 8176 3296187 3296132 9.230000e-15 93.5
135 TraesCS5B01G115600 chr6D 98.113 53 1 0 8124 8176 113614152 113614100 9.230000e-15 93.5
136 TraesCS5B01G115600 chr6D 91.176 68 4 2 8174 8239 206196426 206196359 3.320000e-14 91.6
137 TraesCS5B01G115600 chr6D 96.226 53 2 0 8124 8176 36472116 36472064 4.290000e-13 87.9
138 TraesCS5B01G115600 chr6D 96.226 53 2 0 8124 8176 403969205 403969153 4.290000e-13 87.9
139 TraesCS5B01G115600 chr6D 86.047 86 2 1 8288 8363 69585642 69585727 5.550000e-12 84.2
140 TraesCS5B01G115600 chr6D 92.982 57 4 0 8121 8177 299191262 299191318 5.550000e-12 84.2
141 TraesCS5B01G115600 chr6D 100.000 33 0 0 723 755 4362322 4362354 2.600000e-05 62.1
142 TraesCS5B01G115600 chr3D 93.125 160 10 1 2235 2394 128214165 128214007 5.210000e-57 233.0
143 TraesCS5B01G115600 chr3D 91.566 166 14 0 2230 2395 87925997 87926162 6.740000e-56 230.0
144 TraesCS5B01G115600 chr3D 91.975 162 13 0 2233 2394 482202316 482202477 2.420000e-55 228.0
145 TraesCS5B01G115600 chr3D 95.946 74 3 0 1788 1861 539119791 539119718 4.230000e-23 121.0
146 TraesCS5B01G115600 chr3D 95.946 74 3 0 1788 1861 598889893 598889820 4.230000e-23 121.0
147 TraesCS5B01G115600 chr3D 96.491 57 2 0 8120 8176 66523377 66523433 2.570000e-15 95.3
148 TraesCS5B01G115600 chr3D 86.905 84 1 1 8288 8361 20722234 20722151 1.540000e-12 86.1
149 TraesCS5B01G115600 chr3D 89.706 68 5 2 8171 8236 406157871 406157938 1.540000e-12 86.1
150 TraesCS5B01G115600 chr3D 96.970 33 1 0 723 755 8823168 8823200 1.000000e-03 56.5
151 TraesCS5B01G115600 chr2A 93.590 156 10 0 2239 2394 184561309 184561154 5.210000e-57 233.0
152 TraesCS5B01G115600 chr2A 94.030 67 2 1 8171 8235 742156284 742156350 5.510000e-17 100.0
153 TraesCS5B01G115600 chr2A 100.000 33 0 0 723 755 149966853 149966821 2.600000e-05 62.1
154 TraesCS5B01G115600 chr2A 100.000 33 0 0 723 755 771160787 771160819 2.600000e-05 62.1
155 TraesCS5B01G115600 chr7D 92.073 164 13 0 2231 2394 397554914 397555077 1.870000e-56 231.0
156 TraesCS5B01G115600 chr7D 98.182 55 1 0 8122 8176 610532157 610532103 7.130000e-16 97.1
157 TraesCS5B01G115600 chr7D 97.561 41 1 0 8288 8328 406323217 406323177 4.320000e-08 71.3
158 TraesCS5B01G115600 chr7A 92.073 164 13 0 2231 2394 451519974 451519811 1.870000e-56 231.0
159 TraesCS5B01G115600 chr7A 91.071 112 8 2 2032 2141 443397696 443397807 5.400000e-32 150.0
160 TraesCS5B01G115600 chr7A 100.000 33 0 0 723 755 115799698 115799730 2.600000e-05 62.1
161 TraesCS5B01G115600 chr4D 92.073 164 11 2 2232 2394 75266910 75266748 6.740000e-56 230.0
162 TraesCS5B01G115600 chr4D 93.269 104 7 0 2032 2135 334164490 334164387 4.170000e-33 154.0
163 TraesCS5B01G115600 chr4D 92.683 82 2 2 8288 8365 505692018 505692099 1.970000e-21 115.0
164 TraesCS5B01G115600 chr4D 92.308 78 2 2 8288 8361 505692093 505692016 3.300000e-19 108.0
165 TraesCS5B01G115600 chr4D 98.113 53 1 0 8124 8176 379147276 379147224 9.230000e-15 93.5
166 TraesCS5B01G115600 chr4D 84.706 85 2 1 8288 8361 14663813 14663897 3.340000e-09 75.0
167 TraesCS5B01G115600 chrUn 89.714 175 16 2 2221 2394 81477812 81477639 1.130000e-53 222.0
168 TraesCS5B01G115600 chrUn 92.105 152 12 0 2247 2398 47689736 47689585 1.890000e-51 215.0
169 TraesCS5B01G115600 chrUn 91.195 159 12 1 2239 2397 96478378 96478222 1.890000e-51 215.0
170 TraesCS5B01G115600 chrUn 90.123 162 16 0 2233 2394 41734215 41734376 2.440000e-50 211.0
171 TraesCS5B01G115600 chrUn 90.909 154 14 0 2243 2396 27078524 27078677 3.160000e-49 207.0
172 TraesCS5B01G115600 chrUn 91.391 151 13 0 2244 2394 96464822 96464972 3.160000e-49 207.0
173 TraesCS5B01G115600 chrUn 91.724 145 12 0 2248 2392 80232817 80232673 1.470000e-47 202.0
174 TraesCS5B01G115600 chrUn 88.235 170 19 1 2229 2397 141680912 141680743 1.470000e-47 202.0
175 TraesCS5B01G115600 chrUn 88.024 167 20 0 2229 2395 296641801 296641967 1.900000e-46 198.0
176 TraesCS5B01G115600 chrUn 88.667 150 15 2 8431 8579 91000243 91000391 1.910000e-41 182.0
177 TraesCS5B01G115600 chrUn 88.667 150 15 2 8431 8579 91056650 91056798 1.910000e-41 182.0
178 TraesCS5B01G115600 chrUn 88.667 150 15 2 8431 8579 135321603 135321455 1.910000e-41 182.0
179 TraesCS5B01G115600 chrUn 88.667 150 15 2 8431 8579 135354757 135354609 1.910000e-41 182.0
180 TraesCS5B01G115600 chrUn 88.667 150 15 2 8431 8579 239422209 239422061 1.910000e-41 182.0
181 TraesCS5B01G115600 chrUn 88.667 150 15 2 8431 8579 245489244 245489096 1.910000e-41 182.0
182 TraesCS5B01G115600 chrUn 88.667 150 15 2 8431 8579 367976714 367976862 1.910000e-41 182.0
183 TraesCS5B01G115600 chrUn 90.000 140 13 1 8431 8570 91107478 91107616 6.890000e-41 180.0
184 TraesCS5B01G115600 chrUn 94.118 102 6 0 2032 2133 141680808 141680909 1.160000e-33 156.0
185 TraesCS5B01G115600 chrUn 93.333 75 3 2 1788 1861 81477639 81477712 9.160000e-20 110.0
186 TraesCS5B01G115600 chrUn 98.333 60 1 0 1377 1436 45079944 45080003 1.190000e-18 106.0
187 TraesCS5B01G115600 chrUn 98.333 60 1 0 1377 1436 182436419 182436360 1.190000e-18 106.0
188 TraesCS5B01G115600 chrUn 98.333 60 1 0 1377 1436 250401472 250401413 1.190000e-18 106.0
189 TraesCS5B01G115600 chrUn 84.685 111 11 5 1749 1858 270956504 270956399 1.190000e-18 106.0
190 TraesCS5B01G115600 chrUn 98.333 60 1 0 1377 1436 348814820 348814879 1.190000e-18 106.0
191 TraesCS5B01G115600 chrUn 98.333 60 1 0 1377 1436 362401572 362401513 1.190000e-18 106.0
192 TraesCS5B01G115600 chrUn 98.333 60 1 0 1377 1436 382280611 382280552 1.190000e-18 106.0
193 TraesCS5B01G115600 chrUn 98.305 59 1 0 1378 1436 301689962 301690020 4.260000e-18 104.0
194 TraesCS5B01G115600 chrUn 98.305 59 1 0 1377 1435 380937989 380938047 4.260000e-18 104.0
195 TraesCS5B01G115600 chrUn 88.095 84 6 4 1779 1861 86970677 86970757 7.130000e-16 97.1
196 TraesCS5B01G115600 chrUn 91.667 72 3 3 1787 1857 241612063 241611994 7.130000e-16 97.1
197 TraesCS5B01G115600 chrUn 89.189 74 8 0 1791 1864 93546643 93546570 9.230000e-15 93.5
198 TraesCS5B01G115600 chrUn 89.189 74 8 0 1788 1861 96748735 96748808 9.230000e-15 93.5
199 TraesCS5B01G115600 chrUn 88.312 77 9 0 1788 1864 268327597 268327521 9.230000e-15 93.5
200 TraesCS5B01G115600 chrUn 92.063 63 5 0 1785 1847 96130983 96131045 1.190000e-13 89.8
201 TraesCS5B01G115600 chrUn 89.706 68 5 2 8174 8239 89300851 89300784 1.540000e-12 86.1
202 TraesCS5B01G115600 chrUn 89.552 67 5 2 8174 8238 55725028 55724962 5.550000e-12 84.2
203 TraesCS5B01G115600 chrUn 86.842 76 8 2 1788 1862 58730609 58730683 5.550000e-12 84.2
204 TraesCS5B01G115600 chrUn 89.552 67 5 1 8171 8235 202630539 202630605 5.550000e-12 84.2
205 TraesCS5B01G115600 chrUn 90.625 64 4 2 8174 8235 369753239 369753176 5.550000e-12 84.2
206 TraesCS5B01G115600 chrUn 94.340 53 3 0 8124 8176 55723614 55723666 2.000000e-11 82.4
207 TraesCS5B01G115600 chrUn 94.340 53 3 0 8124 8176 67407030 67407082 2.000000e-11 82.4
208 TraesCS5B01G115600 chrUn 91.667 60 3 1 8174 8231 225564093 225564034 2.000000e-11 82.4
209 TraesCS5B01G115600 chrUn 90.476 63 4 1 8171 8231 237460274 237460336 2.000000e-11 82.4
210 TraesCS5B01G115600 chrUn 90.476 63 4 1 8171 8231 257671990 257672052 2.000000e-11 82.4
211 TraesCS5B01G115600 chrUn 90.476 63 4 1 8171 8231 279682131 279682193 2.000000e-11 82.4
212 TraesCS5B01G115600 chrUn 89.394 66 5 2 8174 8237 478445737 478445672 2.000000e-11 82.4
213 TraesCS5B01G115600 chrUn 94.231 52 3 0 8124 8175 17053356 17053305 7.180000e-11 80.5
214 TraesCS5B01G115600 chrUn 87.324 71 7 2 8171 8239 132121166 132121236 7.180000e-11 80.5
215 TraesCS5B01G115600 chrUn 94.231 52 3 0 8124 8175 346184015 346183964 7.180000e-11 80.5
216 TraesCS5B01G115600 chrUn 89.231 65 5 2 8174 8236 356909621 356909557 7.180000e-11 80.5
217 TraesCS5B01G115600 chrUn 94.231 52 3 0 8124 8175 429713750 429713801 7.180000e-11 80.5
218 TraesCS5B01G115600 chrUn 95.833 48 2 0 8129 8176 3346475 3346428 2.580000e-10 78.7
219 TraesCS5B01G115600 chrUn 92.453 53 4 0 8124 8176 29813969 29814021 9.290000e-10 76.8
220 TraesCS5B01G115600 chrUn 84.270 89 3 2 8288 8366 31480552 31480465 9.290000e-10 76.8
221 TraesCS5B01G115600 chrUn 92.453 53 4 0 8124 8176 83668022 83668074 9.290000e-10 76.8
222 TraesCS5B01G115600 chrUn 95.745 47 2 0 8129 8175 306317307 306317353 9.290000e-10 76.8
223 TraesCS5B01G115600 chrUn 92.453 53 4 0 8124 8176 317673606 317673554 9.290000e-10 76.8
224 TraesCS5B01G115600 chrUn 97.727 44 1 0 8132 8175 350285204 350285161 9.290000e-10 76.8
225 TraesCS5B01G115600 chrUn 92.453 53 4 0 8124 8176 471786107 471786159 9.290000e-10 76.8
226 TraesCS5B01G115600 chrUn 84.524 84 3 1 8288 8361 37384500 37384417 3.340000e-09 75.0
227 TraesCS5B01G115600 chrUn 85.185 81 2 1 8291 8361 228573592 228573512 3.340000e-09 75.0
228 TraesCS5B01G115600 chrUn 84.524 84 3 1 8288 8361 272887342 272887425 3.340000e-09 75.0
229 TraesCS5B01G115600 chrUn 83.516 91 3 3 8288 8368 299203000 299202912 3.340000e-09 75.0
230 TraesCS5B01G115600 chrUn 82.292 96 5 4 8288 8372 301738713 301738807 1.200000e-08 73.1
231 TraesCS5B01G115600 chrUn 83.333 84 4 1 8288 8361 38656827 38656744 1.560000e-07 69.4
232 TraesCS5B01G115600 chrUn 84.146 82 2 1 8291 8361 95223243 95223162 1.560000e-07 69.4
233 TraesCS5B01G115600 chrUn 95.455 44 1 1 8319 8361 234398854 234398897 1.560000e-07 69.4
234 TraesCS5B01G115600 chrUn 95.455 44 1 1 8319 8361 283154874 283154917 1.560000e-07 69.4
235 TraesCS5B01G115600 chrUn 95.455 44 1 1 8319 8361 328245709 328245752 1.560000e-07 69.4
236 TraesCS5B01G115600 chrUn 97.368 38 1 0 8327 8364 266834754 266834717 2.010000e-06 65.8
237 TraesCS5B01G115600 chr4B 89.326 178 18 1 2230 2406 606916760 606916937 1.130000e-53 222.0
238 TraesCS5B01G115600 chr4B 94.595 74 2 1 8288 8361 668868220 668868291 7.080000e-21 113.0
239 TraesCS5B01G115600 chr4B 80.986 142 25 2 2032 2172 34046437 34046577 2.550000e-20 111.0
240 TraesCS5B01G115600 chr4B 91.250 80 4 1 8288 8364 466966709 466966630 1.190000e-18 106.0
241 TraesCS5B01G115600 chr4B 92.208 77 3 1 8288 8361 466966635 466966711 1.190000e-18 106.0
242 TraesCS5B01G115600 chr4B 92.000 75 4 1 8124 8198 452721008 452720936 4.260000e-18 104.0
243 TraesCS5B01G115600 chr4B 91.892 74 6 0 8288 8361 464528123 464528050 4.260000e-18 104.0
244 TraesCS5B01G115600 chr4B 92.958 71 3 1 8291 8361 60545558 60545490 1.530000e-17 102.0
245 TraesCS5B01G115600 chr4B 91.139 79 2 2 8288 8361 477150250 477150328 1.530000e-17 102.0
246 TraesCS5B01G115600 chr4B 84.444 90 8 6 8171 8258 24565263 24565348 5.550000e-12 84.2
247 TraesCS5B01G115600 chr6B 96.117 103 4 0 2031 2133 16269768 16269666 1.490000e-37 169.0
248 TraesCS5B01G115600 chr6B 95.312 64 1 1 8174 8235 135139538 135139475 5.510000e-17 100.0
249 TraesCS5B01G115600 chr4A 100.000 33 0 0 723 755 11688653 11688685 2.600000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G115600 chr5B 194182753 194191385 8632 False 15943.000000 15943 100.000000 1 8633 1 chr5B.!!$F5 8632
1 TraesCS5B01G115600 chr5B 182436201 182436741 540 False 905.000000 905 96.863000 178 719 1 chr5B.!!$F3 541
2 TraesCS5B01G115600 chr5B 537908199 537908745 546 True 905.000000 905 96.533000 178 725 1 chr5B.!!$R1 547
3 TraesCS5B01G115600 chr5B 439437442 439437990 548 False 904.000000 904 96.357000 178 726 1 chr5B.!!$F6 548
4 TraesCS5B01G115600 chr5A 206724250 206732083 7833 True 3031.750000 9930 95.891500 762 8633 4 chr5A.!!$R5 7871
5 TraesCS5B01G115600 chr5A 671483301 671483846 545 False 898.000000 898 96.344000 178 724 1 chr5A.!!$F3 546
6 TraesCS5B01G115600 chr5A 206718422 206719309 887 True 667.000000 872 96.581000 7641 8633 2 chr5A.!!$R4 992
7 TraesCS5B01G115600 chr5D 150825422 150836643 11221 True 1775.957143 5409 94.958857 759 8633 7 chr5D.!!$R7 7874
8 TraesCS5B01G115600 chr3A 574470688 574471779 1091 False 1038.500000 1166 96.201500 1 723 2 chr3A.!!$F3 722
9 TraesCS5B01G115600 chr3A 340248328 340248876 548 True 896.000000 896 96.175000 178 724 1 chr3A.!!$R1 546
10 TraesCS5B01G115600 chr1B 338298769 338299506 737 False 1164.000000 1164 95.399000 3 728 1 chr1B.!!$F2 725
11 TraesCS5B01G115600 chr3B 442471964 442472510 546 True 905.000000 905 96.527000 178 724 1 chr3B.!!$R1 546
12 TraesCS5B01G115600 chr1A 579985383 579988180 2797 False 287.500000 294 96.067500 1 177 2 chr1A.!!$F4 176
13 TraesCS5B01G115600 chr6A 577739692 577742040 2348 True 289.000000 291 96.338500 1 177 2 chr6A.!!$R1 176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
736 3368 0.175760 TAGAGATGTGGCTCCGTTGC 59.824 55.000 0.00 0.00 35.49 4.17 F
1896 4793 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24 F
1999 4896 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09 F
2003 4900 1.068250 GCCAACGCCTAGAGCCTAG 59.932 63.158 0.00 3.06 38.78 3.02 F
2013 4910 1.105167 TAGAGCCTAGGCGCGCTTAA 61.105 55.000 32.29 15.41 45.41 1.85 F
3596 6508 1.668419 GTTGTCTGTGCAAGTGACCT 58.332 50.000 10.98 0.00 0.00 3.85 F
3673 6588 3.054065 GGAATCTTCACTCTGTGGGGATT 60.054 47.826 13.78 13.78 37.60 3.01 F
5153 8153 1.266404 CGCTTTCGTCATTACACTCGC 60.266 52.381 0.00 0.00 0.00 5.03 F
6830 9865 0.031857 CTCGCTACCCTGCTCATCTG 59.968 60.000 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 4877 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.0 42.47 2.43 R
3596 6508 2.042464 ACAGCACCTCTTTCTGAGTCA 58.958 47.619 0.00 0.0 41.11 3.41 R
3786 6701 2.835027 CGGTTAGAGATTTGTAGGCCC 58.165 52.381 0.00 0.0 0.00 5.80 R
4102 7019 5.651576 TGCCATGATATGACAAGCTGTTAAA 59.348 36.000 0.00 0.0 0.00 1.52 R
4240 7157 2.888212 ACATGTGTAATTGGCAAGGGT 58.112 42.857 5.96 0.0 0.00 4.34 R
5153 8153 0.526096 GCAAAGCACGGGCATATGTG 60.526 55.000 14.57 0.0 44.61 3.21 R
5383 8387 2.814805 ACTAGGCAGGTGATTTGCAT 57.185 45.000 0.00 0.0 43.28 3.96 R
6912 9947 0.104304 ACTACGCCGTCATCCATTCC 59.896 55.000 0.00 0.0 0.00 3.01 R
8344 11541 0.038744 AGTTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.0 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 1675 1.941975 GGACGAAAGAAAACCGGTTGA 59.058 47.619 23.08 0.00 0.00 3.18
301 2348 2.093152 CGGACGAAAATAAACCAGACGG 59.907 50.000 0.00 0.00 38.77 4.79
307 2354 7.011828 ACGAAAATAAACCAGACGGATAATG 57.988 36.000 0.00 0.00 35.59 1.90
464 3092 8.044908 TCGAAATTTCCTTAGTTATAGCCTTGT 58.955 33.333 12.54 0.00 0.00 3.16
683 3314 4.580995 TGAAAATAAGCCGGTTGAAAGTGA 59.419 37.500 1.90 0.00 0.00 3.41
714 3346 7.335627 ACTATTCAACCAATTCGTCCATTAGA 58.664 34.615 0.00 0.00 0.00 2.10
728 3360 5.293560 GTCCATTAGAAGTAGAGATGTGGC 58.706 45.833 0.00 0.00 0.00 5.01
730 3362 5.303078 TCCATTAGAAGTAGAGATGTGGCTC 59.697 44.000 0.00 0.00 35.11 4.70
731 3363 5.510520 CCATTAGAAGTAGAGATGTGGCTCC 60.511 48.000 0.00 0.00 35.49 4.70
732 3364 2.028130 AGAAGTAGAGATGTGGCTCCG 58.972 52.381 0.00 0.00 35.49 4.63
733 3365 1.751924 GAAGTAGAGATGTGGCTCCGT 59.248 52.381 0.00 0.00 35.49 4.69
734 3366 1.853963 AGTAGAGATGTGGCTCCGTT 58.146 50.000 0.00 0.00 35.49 4.44
735 3367 1.478510 AGTAGAGATGTGGCTCCGTTG 59.521 52.381 0.00 0.00 35.49 4.10
736 3368 0.175760 TAGAGATGTGGCTCCGTTGC 59.824 55.000 0.00 0.00 35.49 4.17
737 3369 1.375908 GAGATGTGGCTCCGTTGCA 60.376 57.895 0.00 0.00 34.04 4.08
738 3370 0.955428 GAGATGTGGCTCCGTTGCAA 60.955 55.000 0.00 0.00 34.04 4.08
739 3371 1.210155 GATGTGGCTCCGTTGCAAC 59.790 57.895 19.89 19.89 37.40 4.17
993 3632 2.185494 GGCGTCGGGAGATCTACGT 61.185 63.158 15.21 0.00 43.27 3.57
1071 3711 2.361104 GTGGCCGCCTGATTTGGA 60.361 61.111 11.61 0.00 0.00 3.53
1263 3903 3.940209 TTGAGGTGCCATTTTCATGTC 57.060 42.857 0.00 0.00 0.00 3.06
1414 4054 3.523157 TCCTCAAGCTCATGGGATTACAA 59.477 43.478 0.00 0.00 0.00 2.41
1452 4092 3.581101 AGGCTATCTGTGCAATCTAGGA 58.419 45.455 0.00 0.00 0.00 2.94
1632 4272 7.648039 TTTGGTGGTGATTTGTTAGTTTAGT 57.352 32.000 0.00 0.00 0.00 2.24
1705 4345 6.875948 ATGTTGATGTGTTACTTAGTTGCA 57.124 33.333 0.00 0.00 0.00 4.08
1706 4346 6.685527 TGTTGATGTGTTACTTAGTTGCAA 57.314 33.333 0.00 0.00 0.00 4.08
1707 4347 7.089770 TGTTGATGTGTTACTTAGTTGCAAA 57.910 32.000 0.00 0.00 0.00 3.68
1708 4348 7.539436 TGTTGATGTGTTACTTAGTTGCAAAA 58.461 30.769 0.00 0.00 0.00 2.44
1709 4349 8.194104 TGTTGATGTGTTACTTAGTTGCAAAAT 58.806 29.630 0.00 0.00 0.00 1.82
1712 4352 9.891828 TGATGTGTTACTTAGTTGCAAAATTAG 57.108 29.630 0.00 0.00 0.00 1.73
1713 4353 9.893305 GATGTGTTACTTAGTTGCAAAATTAGT 57.107 29.630 0.00 5.29 37.53 2.24
1781 4678 8.658609 CAATATTTGTACTGGGAAGCAAATTTG 58.341 33.333 14.03 14.03 40.58 2.32
1816 4713 5.294552 CCTCCGTTTCTAAATAGAAGCCTTG 59.705 44.000 10.28 2.23 42.66 3.61
1853 4750 8.618677 CAATACGGACTACATACGGATGTATAT 58.381 37.037 20.64 12.15 45.42 0.86
1854 4751 9.836864 AATACGGACTACATACGGATGTATATA 57.163 33.333 20.64 9.35 45.42 0.86
1855 4752 7.783090 ACGGACTACATACGGATGTATATAG 57.217 40.000 20.64 13.28 45.42 1.31
1856 4753 7.559486 ACGGACTACATACGGATGTATATAGA 58.441 38.462 20.64 0.00 45.42 1.98
1857 4754 7.493971 ACGGACTACATACGGATGTATATAGAC 59.506 40.741 20.64 10.95 45.42 2.59
1858 4755 7.493645 CGGACTACATACGGATGTATATAGACA 59.506 40.741 20.64 2.07 45.42 3.41
1859 4756 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
1895 4792 3.509266 GCTAGGCGTTAATTGTGCG 57.491 52.632 0.00 0.00 0.00 5.34
1896 4793 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24
1897 4794 1.129811 GCTAGGCGTTAATTGTGCGTT 59.870 47.619 0.00 0.00 0.00 4.84
1898 4795 2.413634 GCTAGGCGTTAATTGTGCGTTT 60.414 45.455 0.00 0.00 0.00 3.60
1899 4796 2.785713 AGGCGTTAATTGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
1900 4797 2.389998 AGGCGTTAATTGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
1901 4798 1.136748 GGCGTTAATTGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
1902 4799 1.136748 GCGTTAATTGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
1903 4800 2.120232 CGTTAATTGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
1904 4801 2.097637 CGTTAATTGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
1905 4802 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
1906 4803 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
1907 4804 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
1910 4807 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
1911 4808 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
1912 4809 2.811799 GTTTTGCCACCGCCTTGT 59.188 55.556 0.00 0.00 0.00 3.16
1913 4810 1.591327 GTTTTGCCACCGCCTTGTG 60.591 57.895 0.00 0.00 35.98 3.33
1914 4811 3.438017 TTTTGCCACCGCCTTGTGC 62.438 57.895 0.00 0.00 34.85 4.57
1915 4812 4.892965 TTGCCACCGCCTTGTGCT 62.893 61.111 0.00 0.00 38.05 4.40
1916 4813 4.892965 TGCCACCGCCTTGTGCTT 62.893 61.111 0.00 0.00 38.05 3.91
1917 4814 3.605664 GCCACCGCCTTGTGCTTT 61.606 61.111 0.00 0.00 38.05 3.51
1918 4815 2.265182 GCCACCGCCTTGTGCTTTA 61.265 57.895 0.00 0.00 38.05 1.85
1919 4816 1.595093 GCCACCGCCTTGTGCTTTAT 61.595 55.000 0.00 0.00 38.05 1.40
1920 4817 0.887933 CCACCGCCTTGTGCTTTATT 59.112 50.000 0.00 0.00 38.05 1.40
1921 4818 1.402720 CCACCGCCTTGTGCTTTATTG 60.403 52.381 0.00 0.00 38.05 1.90
1922 4819 1.539388 CACCGCCTTGTGCTTTATTGA 59.461 47.619 0.00 0.00 38.05 2.57
1923 4820 1.539827 ACCGCCTTGTGCTTTATTGAC 59.460 47.619 0.00 0.00 38.05 3.18
1924 4821 1.135402 CCGCCTTGTGCTTTATTGACC 60.135 52.381 0.00 0.00 38.05 4.02
1925 4822 1.539388 CGCCTTGTGCTTTATTGACCA 59.461 47.619 0.00 0.00 38.05 4.02
1926 4823 2.030363 CGCCTTGTGCTTTATTGACCAA 60.030 45.455 0.00 0.00 38.05 3.67
1927 4824 3.551863 CGCCTTGTGCTTTATTGACCAAA 60.552 43.478 0.00 0.00 38.05 3.28
1928 4825 3.989817 GCCTTGTGCTTTATTGACCAAAG 59.010 43.478 0.00 0.00 36.32 2.77
1935 4832 3.791353 GCTTTATTGACCAAAGCGTATGC 59.209 43.478 0.00 0.00 45.88 3.14
1962 4859 1.978782 GCAATTATGCGCGGATTAAGC 59.021 47.619 20.84 14.49 43.83 3.09
1971 4868 2.300623 GCGGATTAAGCGCAGTTATG 57.699 50.000 11.47 0.00 0.00 1.90
1991 4888 1.201332 GCAATGCGTTTTGCCAACG 59.799 52.632 12.66 12.66 44.94 4.10
1996 4893 4.838959 CGTTTTGCCAACGCCTAG 57.161 55.556 5.44 0.00 36.82 3.02
1997 4894 2.240230 CGTTTTGCCAACGCCTAGA 58.760 52.632 5.44 0.00 36.82 2.43
1998 4895 0.165944 CGTTTTGCCAACGCCTAGAG 59.834 55.000 5.44 0.00 36.82 2.43
1999 4896 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
2000 4897 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
2001 4898 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
2002 4899 1.261938 TTGCCAACGCCTAGAGCCTA 61.262 55.000 0.00 0.00 38.78 3.93
2003 4900 1.068250 GCCAACGCCTAGAGCCTAG 59.932 63.158 0.00 3.06 38.78 3.02
2004 4901 1.742768 CCAACGCCTAGAGCCTAGG 59.257 63.158 18.85 18.85 38.78 3.02
2009 4906 4.350441 CCTAGAGCCTAGGCGCGC 62.350 72.222 28.76 25.94 45.41 6.86
2010 4907 3.291383 CTAGAGCCTAGGCGCGCT 61.291 66.667 32.29 25.96 45.41 5.92
2011 4908 2.833582 TAGAGCCTAGGCGCGCTT 60.834 61.111 32.29 27.46 45.41 4.68
2012 4909 1.516365 CTAGAGCCTAGGCGCGCTTA 61.516 60.000 32.29 27.04 45.41 3.09
2013 4910 1.105167 TAGAGCCTAGGCGCGCTTAA 61.105 55.000 32.29 15.41 45.41 1.85
2014 4911 2.356818 AGAGCCTAGGCGCGCTTAAG 62.357 60.000 32.29 22.56 45.41 1.85
2015 4912 3.640992 GCCTAGGCGCGCTTAAGC 61.641 66.667 32.29 28.27 37.78 3.09
2137 5034 2.355818 GGAACGGAGGGAGTAATTGCTT 60.356 50.000 0.00 0.00 0.00 3.91
2164 5062 6.940298 TCTTGGTCTAAGGTTGAATTTAGTGG 59.060 38.462 0.00 0.00 37.01 4.00
2194 5094 7.553760 TCTTAATCTGATGCTCTATTTTGTGCA 59.446 33.333 0.00 0.00 40.07 4.57
2237 5137 7.078249 TGTGTGATGCCTTACCATATATTCT 57.922 36.000 0.00 0.00 0.00 2.40
2239 5139 7.016563 TGTGTGATGCCTTACCATATATTCTCT 59.983 37.037 0.00 0.00 0.00 3.10
2241 5141 6.754209 GTGATGCCTTACCATATATTCTCTCG 59.246 42.308 0.00 0.00 0.00 4.04
2430 5330 7.985476 TCAGTGGAGTTTAACTTCTGAAAAAG 58.015 34.615 18.26 0.00 32.46 2.27
2615 5516 2.191641 GCTTGGAGCTAGGGCCTG 59.808 66.667 18.53 7.50 38.45 4.85
3070 5982 5.652014 TCATTCTCATGTCATTTACCAACCC 59.348 40.000 0.00 0.00 0.00 4.11
3355 6267 3.772025 ACCTACATCTGGGCATATCTAGC 59.228 47.826 0.00 0.00 0.00 3.42
3457 6369 4.764050 TTGTCTGACTGGTTAGGAAACA 57.236 40.909 9.51 0.00 37.34 2.83
3521 6433 9.213799 GATATTGGAATGGTTTCTAGATCAGAC 57.786 37.037 0.00 0.00 31.12 3.51
3567 6479 7.424803 TCTTTATGTGTTTGTCTGTTGGATTG 58.575 34.615 0.00 0.00 0.00 2.67
3596 6508 1.668419 GTTGTCTGTGCAAGTGACCT 58.332 50.000 10.98 0.00 0.00 3.85
3673 6588 3.054065 GGAATCTTCACTCTGTGGGGATT 60.054 47.826 13.78 13.78 37.60 3.01
3911 6827 5.483811 TGTGTTCACTTACTGTTTGAGTGA 58.516 37.500 13.71 13.71 45.71 3.41
4240 7157 9.534565 GATAGTTCAGTATGCAACTAATCAAGA 57.465 33.333 0.00 0.00 39.91 3.02
4314 7231 6.112927 ACTACCATTGCAAAATCACCAAAT 57.887 33.333 1.71 0.00 0.00 2.32
4379 7296 5.853936 TGTCTCAATGGATAGTATTTCCCG 58.146 41.667 0.00 0.00 31.87 5.14
4417 7334 8.414003 TGCGACACTTCTCTGTTCTAATTATAT 58.586 33.333 0.00 0.00 0.00 0.86
4592 7509 3.630312 AGTTTGCACGTAAATTGGACTGT 59.370 39.130 0.00 0.00 0.00 3.55
4694 7694 5.079689 TCCGTGAGATATACAACTTTGCA 57.920 39.130 0.00 0.00 0.00 4.08
4825 7825 9.965902 ATCTATGAAACTTTCCTACAACATTCT 57.034 29.630 0.00 0.00 0.00 2.40
4979 7979 7.233348 TGGCATTTCTATCTAATCCCATTTTCC 59.767 37.037 0.00 0.00 0.00 3.13
5033 8033 7.663905 TGTTGTAAGATGGTACTATTTTGCTGT 59.336 33.333 10.74 0.00 0.00 4.40
5113 8113 3.319122 GGTCTCAGCTGTTGGAATTTGTT 59.681 43.478 14.67 0.00 0.00 2.83
5139 8139 5.586643 AGGTAAATCTTTCATCCTCGCTTTC 59.413 40.000 0.00 0.00 0.00 2.62
5153 8153 1.266404 CGCTTTCGTCATTACACTCGC 60.266 52.381 0.00 0.00 0.00 5.03
5321 8325 5.002464 TGTTAGAATACACCTTACGCTCC 57.998 43.478 0.00 0.00 0.00 4.70
5383 8387 5.338871 GGGATCTCCATGTTTGTAGTTACCA 60.339 44.000 0.00 0.00 37.91 3.25
5398 8402 1.473258 TACCATGCAAATCACCTGCC 58.527 50.000 0.00 0.00 39.13 4.85
5436 8440 2.582636 ACCATTTCATCTAGCCCCAACT 59.417 45.455 0.00 0.00 0.00 3.16
5545 8555 6.118170 CCCAACACAATATCAGTCTTCATCT 58.882 40.000 0.00 0.00 0.00 2.90
5573 8583 0.882474 ACTACACTCTCCGCTCACAC 59.118 55.000 0.00 0.00 0.00 3.82
5586 8596 4.634004 TCCGCTCACACGAAAATAATGAAT 59.366 37.500 0.00 0.00 34.06 2.57
5736 8746 7.751047 TGCGTAAGATTCTACTGTTATTGAC 57.249 36.000 0.00 0.00 43.02 3.18
5815 8830 2.810274 AGTAGCATGCTAAATGCCATCG 59.190 45.455 28.44 0.00 45.59 3.84
5925 8940 6.421202 GGAATATCAAGTACTCAACCACGATC 59.579 42.308 0.00 0.00 0.00 3.69
5941 8956 1.464608 CGATCCATGTGCGAACAGTTT 59.535 47.619 1.02 0.00 0.00 2.66
5962 8977 5.982465 TTGGTAGCAATTTCAAGCAAAAC 57.018 34.783 2.54 0.00 0.00 2.43
5963 8978 5.016051 TGGTAGCAATTTCAAGCAAAACA 57.984 34.783 0.00 0.00 0.00 2.83
5965 8980 5.523188 TGGTAGCAATTTCAAGCAAAACAAG 59.477 36.000 0.00 0.00 0.00 3.16
5966 8981 5.523552 GGTAGCAATTTCAAGCAAAACAAGT 59.476 36.000 0.00 0.00 0.00 3.16
5967 8982 6.699642 GGTAGCAATTTCAAGCAAAACAAGTA 59.300 34.615 0.00 0.00 0.00 2.24
5968 8983 6.588348 AGCAATTTCAAGCAAAACAAGTAC 57.412 33.333 0.00 0.00 0.00 2.73
5969 8984 5.523552 AGCAATTTCAAGCAAAACAAGTACC 59.476 36.000 0.00 0.00 0.00 3.34
5970 8985 5.523552 GCAATTTCAAGCAAAACAAGTACCT 59.476 36.000 0.00 0.00 0.00 3.08
5971 8986 6.509997 GCAATTTCAAGCAAAACAAGTACCTG 60.510 38.462 0.00 0.00 0.00 4.00
5972 8987 5.906113 TTTCAAGCAAAACAAGTACCTGA 57.094 34.783 0.00 0.00 0.00 3.86
5973 8988 6.463995 TTTCAAGCAAAACAAGTACCTGAT 57.536 33.333 0.00 0.00 0.00 2.90
5974 8989 5.437289 TCAAGCAAAACAAGTACCTGATG 57.563 39.130 0.00 0.00 0.00 3.07
5975 8990 3.923017 AGCAAAACAAGTACCTGATGC 57.077 42.857 0.00 6.09 0.00 3.91
5976 8991 2.558359 AGCAAAACAAGTACCTGATGCC 59.442 45.455 13.89 2.79 0.00 4.40
5977 8992 2.352715 GCAAAACAAGTACCTGATGCCC 60.353 50.000 0.00 0.00 0.00 5.36
5978 8993 3.157087 CAAAACAAGTACCTGATGCCCT 58.843 45.455 0.00 0.00 0.00 5.19
6099 9114 5.491982 ACTTCCGCAGAGAACTTCAATATT 58.508 37.500 0.00 0.00 0.00 1.28
6252 9278 6.554334 TTAACATCACAGAAGTAAACCTGC 57.446 37.500 0.00 0.00 33.90 4.85
6369 9396 4.095400 AGCCCCTCCCGATCCACT 62.095 66.667 0.00 0.00 0.00 4.00
6408 9437 1.866059 CATTGCATGAGCGCACACG 60.866 57.895 10.42 2.24 46.23 4.49
6449 9478 5.795441 GCATCCGTTACAAAGAACAAGAATC 59.205 40.000 0.00 0.00 0.00 2.52
6487 9516 5.003804 GGATCAGAAAACAGCTAACCTCAA 58.996 41.667 0.00 0.00 0.00 3.02
6620 9649 1.112950 GGCTTCCTCTACCTACGCTT 58.887 55.000 0.00 0.00 0.00 4.68
6680 9715 1.964373 GCGACGGGATTGTGTTGGT 60.964 57.895 0.00 0.00 0.00 3.67
6700 9735 2.106684 GTGGATCCCAAGGAGTATTCCC 59.893 54.545 9.90 0.00 45.24 3.97
6702 9737 2.106684 GGATCCCAAGGAGTATTCCCAC 59.893 54.545 0.00 0.00 45.24 4.61
6708 9743 2.236395 CAAGGAGTATTCCCACGGAAGT 59.764 50.000 0.00 0.00 45.48 3.01
6741 9776 3.051392 GCAGTAAATTGCGGCCGCT 62.051 57.895 45.79 30.82 42.51 5.52
6826 9861 2.037367 ACCTCGCTACCCTGCTCA 59.963 61.111 0.00 0.00 0.00 4.26
6829 9864 1.112315 CCTCGCTACCCTGCTCATCT 61.112 60.000 0.00 0.00 0.00 2.90
6830 9865 0.031857 CTCGCTACCCTGCTCATCTG 59.968 60.000 0.00 0.00 0.00 2.90
6831 9866 1.068753 CGCTACCCTGCTCATCTGG 59.931 63.158 0.00 0.00 0.00 3.86
6907 9942 0.178301 CCCGAGCTCCCTTTCTTACC 59.822 60.000 8.47 0.00 0.00 2.85
6908 9943 0.178301 CCGAGCTCCCTTTCTTACCC 59.822 60.000 8.47 0.00 0.00 3.69
6909 9944 0.178301 CGAGCTCCCTTTCTTACCCC 59.822 60.000 8.47 0.00 0.00 4.95
6910 9945 0.547075 GAGCTCCCTTTCTTACCCCC 59.453 60.000 0.87 0.00 0.00 5.40
7001 10037 1.967343 ATGGGGGAGAGAGAGGGGAC 61.967 65.000 0.00 0.00 0.00 4.46
7005 10041 0.041982 GGGAGAGAGAGGGGACTTGT 59.958 60.000 0.00 0.00 44.43 3.16
7143 10179 5.044993 ACGGGTGACATTAAGGGGTAATTTA 60.045 40.000 0.00 0.00 29.38 1.40
7302 10338 3.440522 GGGCAAATGAGACAGGTTAACTC 59.559 47.826 5.42 0.00 0.00 3.01
7303 10339 3.440522 GGCAAATGAGACAGGTTAACTCC 59.559 47.826 5.42 0.00 0.00 3.85
7372 10408 7.905604 TCAGTGATTCGTCAATAATCTGTTT 57.094 32.000 0.00 0.00 34.95 2.83
7512 10555 7.544217 GTGAACTTAACCAATTTCACTGTTGTT 59.456 33.333 11.24 0.00 44.64 2.83
7636 10679 2.605837 TCAGCGTAACAAGTGAACCA 57.394 45.000 0.00 0.00 0.00 3.67
7736 10779 0.037447 TGGATGTCGGCATTGTTCCA 59.963 50.000 2.92 4.70 35.07 3.53
7740 10783 1.236616 TGTCGGCATTGTTCCAGCTG 61.237 55.000 6.78 6.78 36.00 4.24
7821 10864 4.164988 ACTGGCTAGGATTGCAAACTATCT 59.835 41.667 1.71 0.00 0.00 1.98
7826 10869 6.593382 GGCTAGGATTGCAAACTATCTATCTG 59.407 42.308 1.71 0.00 0.00 2.90
7845 10888 3.382865 TCTGGTTTGTATTTTGTGCTGCA 59.617 39.130 0.00 0.00 0.00 4.41
7923 10966 6.027025 TGGGTCTATAGTTCATGTAGGTCT 57.973 41.667 0.00 0.00 0.00 3.85
8246 11443 3.769844 TGGAGGGAGTACTTGTCATCTTC 59.230 47.826 0.00 0.00 0.00 2.87
8250 11447 5.833340 AGGGAGTACTTGTCATCTTCTACT 58.167 41.667 0.00 0.00 0.00 2.57
8255 11452 8.254508 GGAGTACTTGTCATCTTCTACTTTCAT 58.745 37.037 0.00 0.00 0.00 2.57
8281 11478 0.680618 TGTGATTGCTTGCCCAAAGG 59.319 50.000 0.00 0.00 36.30 3.11
8286 11483 2.547299 TTGCTTGCCCAAAGGAAATG 57.453 45.000 0.00 0.00 42.57 2.32
8287 11484 0.035176 TGCTTGCCCAAAGGAAATGC 59.965 50.000 0.00 0.00 36.30 3.56
8289 11486 1.673923 GCTTGCCCAAAGGAAATGCTC 60.674 52.381 0.00 0.00 36.30 4.26
8290 11487 0.975887 TTGCCCAAAGGAAATGCTCC 59.024 50.000 0.00 0.00 45.81 4.70
8291 11488 0.904394 TGCCCAAAGGAAATGCTCCC 60.904 55.000 0.00 0.00 46.81 4.30
8292 11489 0.615827 GCCCAAAGGAAATGCTCCCT 60.616 55.000 0.00 0.00 46.81 4.20
8293 11490 1.478631 CCCAAAGGAAATGCTCCCTC 58.521 55.000 0.00 0.00 46.81 4.30
8294 11491 1.272648 CCCAAAGGAAATGCTCCCTCA 60.273 52.381 0.00 0.00 46.81 3.86
8295 11492 2.097825 CCAAAGGAAATGCTCCCTCAG 58.902 52.381 0.00 0.00 46.81 3.35
8296 11493 2.556114 CCAAAGGAAATGCTCCCTCAGT 60.556 50.000 0.00 0.00 46.81 3.41
8297 11494 3.160269 CAAAGGAAATGCTCCCTCAGTT 58.840 45.455 0.00 0.00 46.81 3.16
8298 11495 2.797177 AGGAAATGCTCCCTCAGTTC 57.203 50.000 0.00 0.00 46.81 3.01
8300 11497 1.373570 GAAATGCTCCCTCAGTTCCG 58.626 55.000 0.00 0.00 35.67 4.30
8301 11498 0.984230 AAATGCTCCCTCAGTTCCGA 59.016 50.000 0.00 0.00 0.00 4.55
8302 11499 1.207791 AATGCTCCCTCAGTTCCGAT 58.792 50.000 0.00 0.00 0.00 4.18
8303 11500 1.207791 ATGCTCCCTCAGTTCCGATT 58.792 50.000 0.00 0.00 0.00 3.34
8304 11501 0.984230 TGCTCCCTCAGTTCCGATTT 59.016 50.000 0.00 0.00 0.00 2.17
8305 11502 2.184533 TGCTCCCTCAGTTCCGATTTA 58.815 47.619 0.00 0.00 0.00 1.40
8306 11503 2.093658 TGCTCCCTCAGTTCCGATTTAC 60.094 50.000 0.00 0.00 0.00 2.01
8307 11504 2.168728 GCTCCCTCAGTTCCGATTTACT 59.831 50.000 0.00 0.00 0.00 2.24
8308 11505 3.369576 GCTCCCTCAGTTCCGATTTACTT 60.370 47.826 0.00 0.00 0.00 2.24
8309 11506 4.184629 CTCCCTCAGTTCCGATTTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
8310 11507 3.581332 TCCCTCAGTTCCGATTTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
8311 11508 3.933332 CCCTCAGTTCCGATTTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
8312 11509 3.612860 CCTCAGTTCCGATTTACTTGTCG 59.387 47.826 0.00 0.00 37.58 4.35
8313 11510 4.235360 CTCAGTTCCGATTTACTTGTCGT 58.765 43.478 0.00 0.00 36.17 4.34
8314 11511 3.985279 TCAGTTCCGATTTACTTGTCGTG 59.015 43.478 0.00 0.00 36.17 4.35
8315 11512 3.122948 CAGTTCCGATTTACTTGTCGTGG 59.877 47.826 0.00 0.00 36.17 4.94
8316 11513 3.062042 GTTCCGATTTACTTGTCGTGGT 58.938 45.455 0.00 0.00 36.17 4.16
8317 11514 3.389925 TCCGATTTACTTGTCGTGGTT 57.610 42.857 0.00 0.00 36.17 3.67
8318 11515 3.731089 TCCGATTTACTTGTCGTGGTTT 58.269 40.909 0.00 0.00 36.17 3.27
8319 11516 4.128643 TCCGATTTACTTGTCGTGGTTTT 58.871 39.130 0.00 0.00 36.17 2.43
8320 11517 5.295950 TCCGATTTACTTGTCGTGGTTTTA 58.704 37.500 0.00 0.00 36.17 1.52
8321 11518 5.406175 TCCGATTTACTTGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 36.17 1.85
8322 11519 5.178067 CCGATTTACTTGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 36.17 2.24
8323 11520 6.293027 CCGATTTACTTGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 36.17 2.24
8324 11521 6.788930 CGATTTACTTGTCGTGGTTTTAGTTC 59.211 38.462 0.00 0.00 33.42 3.01
8325 11522 6.981762 TTTACTTGTCGTGGTTTTAGTTCA 57.018 33.333 0.00 0.00 0.00 3.18
8326 11523 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
8327 11524 5.883503 ACTTGTCGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
8328 11525 6.256912 ACTTGTCGTGGTTTTAGTTCAAAA 57.743 33.333 0.00 0.00 33.66 2.44
8329 11526 6.679843 ACTTGTCGTGGTTTTAGTTCAAAAA 58.320 32.000 0.00 0.00 37.85 1.94
8330 11527 6.583427 ACTTGTCGTGGTTTTAGTTCAAAAAC 59.417 34.615 4.09 4.09 44.80 2.43
8337 11534 5.594215 GTTTTAGTTCAAAAACCACGACG 57.406 39.130 0.00 0.00 41.43 5.12
8338 11535 5.323105 GTTTTAGTTCAAAAACCACGACGA 58.677 37.500 0.00 0.00 41.43 4.20
8339 11536 4.782252 TTAGTTCAAAAACCACGACGAG 57.218 40.909 0.00 0.00 35.92 4.18
8340 11537 2.624636 AGTTCAAAAACCACGACGAGT 58.375 42.857 0.00 0.00 35.92 4.18
8341 11538 3.784338 AGTTCAAAAACCACGACGAGTA 58.216 40.909 0.00 0.00 35.92 2.59
8342 11539 4.183101 AGTTCAAAAACCACGACGAGTAA 58.817 39.130 0.00 0.00 35.92 2.24
8343 11540 4.630940 AGTTCAAAAACCACGACGAGTAAA 59.369 37.500 0.00 0.00 35.92 2.01
8344 11541 5.295045 AGTTCAAAAACCACGACGAGTAAAT 59.705 36.000 0.00 0.00 35.92 1.40
8345 11542 5.333046 TCAAAAACCACGACGAGTAAATC 57.667 39.130 0.00 0.00 0.00 2.17
8346 11543 9.548818 AGTTCAAAAACCACGACGAGTAAATCG 62.549 40.741 0.00 0.00 45.77 3.34
8394 11591 5.508124 TTCTTTTTGTTGTTGCAACGAAG 57.492 34.783 21.10 14.08 0.00 3.79
8457 11654 1.042229 AAGTGCCACATGTGTTGCAT 58.958 45.000 25.85 13.13 46.19 3.96
8549 11746 1.202222 GCATGTCAGCATCCTTTTCGG 60.202 52.381 0.00 0.00 31.99 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
301 2348 3.248602 GGATTGCGTCCACTGTCATTATC 59.751 47.826 3.24 0.00 46.96 1.75
669 3298 1.971695 CCCCTCACTTTCAACCGGC 60.972 63.158 0.00 0.00 0.00 6.13
683 3314 3.371595 CGAATTGGTTGAATAGTCCCCCT 60.372 47.826 0.00 0.00 0.00 4.79
714 3346 1.853963 ACGGAGCCACATCTCTACTT 58.146 50.000 0.00 0.00 33.70 2.24
741 3373 3.285523 TACCGGAAGAACGCCCGTG 62.286 63.158 9.46 0.00 43.93 4.94
742 3374 2.990967 TACCGGAAGAACGCCCGT 60.991 61.111 9.46 0.00 43.93 5.28
743 3375 2.202703 CTACCGGAAGAACGCCCG 60.203 66.667 9.46 0.00 44.94 6.13
744 3376 0.037046 TTTCTACCGGAAGAACGCCC 60.037 55.000 9.46 0.00 35.25 6.13
745 3377 1.931841 GATTTCTACCGGAAGAACGCC 59.068 52.381 9.46 0.00 35.25 5.68
746 3378 2.889852 AGATTTCTACCGGAAGAACGC 58.110 47.619 9.46 0.00 35.25 4.84
747 3379 7.535489 AAAATAGATTTCTACCGGAAGAACG 57.465 36.000 9.46 0.00 35.25 3.95
748 3380 8.538039 CGTAAAATAGATTTCTACCGGAAGAAC 58.462 37.037 9.46 0.00 35.25 3.01
749 3381 8.469200 TCGTAAAATAGATTTCTACCGGAAGAA 58.531 33.333 9.46 0.00 35.16 2.52
750 3382 7.999679 TCGTAAAATAGATTTCTACCGGAAGA 58.000 34.615 9.46 0.00 35.16 2.87
751 3383 8.638685 TTCGTAAAATAGATTTCTACCGGAAG 57.361 34.615 9.46 0.00 35.16 3.46
752 3384 9.603921 AATTCGTAAAATAGATTTCTACCGGAA 57.396 29.630 9.46 0.00 32.27 4.30
922 3561 1.814169 GATCTGGTCGCCGGGAAAC 60.814 63.158 2.18 0.00 0.00 2.78
993 3632 0.253160 AGGAGCTTACCATGTCCCCA 60.253 55.000 0.00 0.00 0.00 4.96
1071 3711 6.296145 GGCCTAGATATAGATTCCTTTGCTGT 60.296 42.308 0.00 0.00 0.00 4.40
1263 3903 3.859961 CACTGGTACGACATAAGCTTGAG 59.140 47.826 9.86 3.66 0.00 3.02
1340 3980 5.288804 GGATTCAGCAGTTTTTAACAGCAA 58.711 37.500 9.15 0.00 45.20 3.91
1414 4054 9.911788 CAGATAGCCTTTTATTGGATGGTATAT 57.088 33.333 0.00 0.00 0.00 0.86
1452 4092 6.423776 AATGAGTCAAACAAAATCCCACAT 57.576 33.333 0.00 0.00 0.00 3.21
1588 4228 5.069251 CCAAATTACAGTCCCGAGAGTCTAT 59.931 44.000 0.00 0.00 0.00 1.98
1769 4666 5.402398 GGAGTACATCACAAATTTGCTTCC 58.598 41.667 18.12 9.36 0.00 3.46
1781 4678 2.496470 AGAAACGGAGGGAGTACATCAC 59.504 50.000 0.00 0.00 0.00 3.06
1877 4774 0.725117 ACGCACAATTAACGCCTAGC 59.275 50.000 0.00 0.00 0.00 3.42
1878 4775 3.465122 AAACGCACAATTAACGCCTAG 57.535 42.857 0.00 0.00 0.00 3.02
1879 4776 3.556513 CAAAACGCACAATTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
1880 4777 2.389998 CAAAACGCACAATTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
1881 4778 1.136748 GCAAAACGCACAATTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
1882 4779 1.136748 GGCAAAACGCACAATTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
1883 4780 2.097637 GTGGCAAAACGCACAATTAACG 60.098 45.455 0.00 0.00 45.17 3.18
1884 4781 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
1885 4782 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
1886 4783 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
1887 4784 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
1888 4785 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
1889 4786 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
1894 4791 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
1895 4792 1.591327 CACAAGGCGGTGGCAAAAC 60.591 57.895 4.67 0.00 42.47 2.43
1896 4793 2.811101 CACAAGGCGGTGGCAAAA 59.189 55.556 4.67 0.00 42.47 2.44
1897 4794 3.910490 GCACAAGGCGGTGGCAAA 61.910 61.111 12.98 0.00 42.47 3.68
1906 4803 3.658757 TTGGTCAATAAAGCACAAGGC 57.341 42.857 0.00 0.00 45.30 4.35
1942 4839 1.978782 GCTTAATCCGCGCATAATTGC 59.021 47.619 8.75 0.00 45.78 3.56
1943 4840 2.233355 CGCTTAATCCGCGCATAATTG 58.767 47.619 8.75 0.00 44.33 2.32
1944 4841 2.594529 CGCTTAATCCGCGCATAATT 57.405 45.000 8.75 6.16 44.33 1.40
1953 4850 2.300623 GCATAACTGCGCTTAATCCG 57.699 50.000 9.73 0.00 38.92 4.18
1979 4876 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60
1980 4877 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
1981 4878 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
1982 4879 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
1983 4880 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
1984 4881 1.676678 CTAGGCTCTAGGCGTTGGCA 61.677 60.000 0.00 0.00 46.23 4.92
1985 4882 1.068250 CTAGGCTCTAGGCGTTGGC 59.932 63.158 0.00 0.00 46.23 4.52
1986 4883 1.742768 CCTAGGCTCTAGGCGTTGG 59.257 63.158 13.35 10.22 46.23 3.77
1992 4889 4.350441 GCGCGCCTAGGCTCTAGG 62.350 72.222 30.55 16.12 39.32 3.02
1993 4890 1.516365 TAAGCGCGCCTAGGCTCTAG 61.516 60.000 30.55 18.84 38.88 2.43
1994 4891 1.105167 TTAAGCGCGCCTAGGCTCTA 61.105 55.000 30.55 9.53 38.88 2.43
1995 4892 2.356818 CTTAAGCGCGCCTAGGCTCT 62.357 60.000 30.55 20.68 38.88 4.09
1996 4893 1.951631 CTTAAGCGCGCCTAGGCTC 60.952 63.158 30.55 22.76 38.88 4.70
1997 4894 2.107141 CTTAAGCGCGCCTAGGCT 59.893 61.111 30.55 14.71 42.33 4.58
1998 4895 3.640992 GCTTAAGCGCGCCTAGGC 61.641 66.667 30.33 27.28 37.85 3.93
2101 4998 7.015001 TCCCTCCGTTCCTAAATATAAGACTTC 59.985 40.741 0.00 0.00 0.00 3.01
2137 5034 7.878127 CACTAAATTCAACCTTAGACCAAGAGA 59.122 37.037 0.00 0.00 36.22 3.10
2164 5062 7.727331 AAATAGAGCATCAGATTAAGACAGC 57.273 36.000 0.00 0.00 37.82 4.40
2194 5094 2.699846 ACAACATCACAATTTGCTGGGT 59.300 40.909 0.00 0.00 0.00 4.51
2430 5330 4.671377 TGCAACAACAAGATGACAAACTC 58.329 39.130 0.00 0.00 0.00 3.01
2881 5793 8.565416 TGCATCATCAGATAACAGAATCATTTC 58.435 33.333 0.00 0.00 31.88 2.17
3051 5963 5.982890 AAAGGGTTGGTAAATGACATGAG 57.017 39.130 0.00 0.00 0.00 2.90
3135 6047 2.158173 AGCAAAAAGAAAGGGGGATGGA 60.158 45.455 0.00 0.00 0.00 3.41
3355 6267 3.689649 GGTTGATTGCTACTAAGTGTGGG 59.310 47.826 0.00 0.00 0.00 4.61
3457 6369 8.526147 GCATCCTGCTAACCAATAATATTCAAT 58.474 33.333 0.00 0.00 40.96 2.57
3485 6397 8.519799 AAACCATTCCAATATCACGAGTAAAT 57.480 30.769 0.00 0.00 0.00 1.40
3492 6404 7.657354 TGATCTAGAAACCATTCCAATATCACG 59.343 37.037 0.00 0.00 36.12 4.35
3521 6433 6.705863 AGAGGGAAGCTAAATTTGCTAATG 57.294 37.500 13.22 0.00 40.22 1.90
3567 6479 2.228582 TGCACAGACAACCACAATATGC 59.771 45.455 0.00 0.00 0.00 3.14
3596 6508 2.042464 ACAGCACCTCTTTCTGAGTCA 58.958 47.619 0.00 0.00 41.11 3.41
3786 6701 2.835027 CGGTTAGAGATTTGTAGGCCC 58.165 52.381 0.00 0.00 0.00 5.80
4102 7019 5.651576 TGCCATGATATGACAAGCTGTTAAA 59.348 36.000 0.00 0.00 0.00 1.52
4240 7157 2.888212 ACATGTGTAATTGGCAAGGGT 58.112 42.857 5.96 0.00 0.00 4.34
4379 7296 6.092259 AGAGAAGTGTCGCAAAAATATGTACC 59.908 38.462 0.00 0.00 0.00 3.34
4694 7694 2.621556 TTTCCCTAGCCCAAGCAAAT 57.378 45.000 0.00 0.00 43.56 2.32
4825 7825 6.659242 GGATTTCTGACCCTGTAAAATCAAGA 59.341 38.462 8.02 0.00 37.83 3.02
5113 8113 6.235231 AGCGAGGATGAAAGATTTACCTTA 57.765 37.500 0.00 0.00 0.00 2.69
5139 8139 3.362014 GCATATGTGCGAGTGTAATGACG 60.362 47.826 4.29 0.00 42.28 4.35
5153 8153 0.526096 GCAAAGCACGGGCATATGTG 60.526 55.000 14.57 0.00 44.61 3.21
5383 8387 2.814805 ACTAGGCAGGTGATTTGCAT 57.185 45.000 0.00 0.00 43.28 3.96
5398 8402 9.606631 ATGAAATGGTAGAAGAAGCTTAACTAG 57.393 33.333 0.00 0.00 0.00 2.57
5436 8440 7.106890 TGCCTGTATACTGTTTTGCTACATAA 58.893 34.615 4.17 0.00 0.00 1.90
5545 8555 3.488047 GCGGAGAGTGTAGTACGCATTTA 60.488 47.826 15.92 0.00 45.57 1.40
5586 8596 6.036735 GGCGTGCAGAAGTAGATGTATTTAAA 59.963 38.462 0.00 0.00 0.00 1.52
5736 8746 3.069586 TGAACTGCCACCCTAGATAATCG 59.930 47.826 0.00 0.00 0.00 3.34
5925 8940 0.667993 ACCAAACTGTTCGCACATGG 59.332 50.000 4.99 4.99 30.39 3.66
5941 8956 5.016051 TGTTTTGCTTGAAATTGCTACCA 57.984 34.783 0.00 0.00 0.00 3.25
5962 8977 2.114616 AGAGAGGGCATCAGGTACTTG 58.885 52.381 0.58 0.00 34.60 3.16
5963 8978 2.559381 AGAGAGGGCATCAGGTACTT 57.441 50.000 0.58 0.00 34.60 2.24
5965 8980 2.501723 TCAAAGAGAGGGCATCAGGTAC 59.498 50.000 0.58 0.00 0.00 3.34
5966 8981 2.832838 TCAAAGAGAGGGCATCAGGTA 58.167 47.619 0.58 0.00 0.00 3.08
5967 8982 1.661463 TCAAAGAGAGGGCATCAGGT 58.339 50.000 0.58 0.00 0.00 4.00
5968 8983 2.026449 AGTTCAAAGAGAGGGCATCAGG 60.026 50.000 0.58 0.00 0.00 3.86
5969 8984 3.347077 AGTTCAAAGAGAGGGCATCAG 57.653 47.619 0.58 0.00 0.00 2.90
5970 8985 3.795688 AAGTTCAAAGAGAGGGCATCA 57.204 42.857 0.58 0.00 0.00 3.07
5971 8986 4.074970 TCAAAGTTCAAAGAGAGGGCATC 58.925 43.478 0.00 0.00 0.00 3.91
5972 8987 4.104383 TCAAAGTTCAAAGAGAGGGCAT 57.896 40.909 0.00 0.00 0.00 4.40
5973 8988 3.576078 TCAAAGTTCAAAGAGAGGGCA 57.424 42.857 0.00 0.00 0.00 5.36
5974 8989 3.885901 AGTTCAAAGTTCAAAGAGAGGGC 59.114 43.478 0.00 0.00 0.00 5.19
5975 8990 6.936900 TGATAGTTCAAAGTTCAAAGAGAGGG 59.063 38.462 0.00 0.00 0.00 4.30
5976 8991 7.442364 TGTGATAGTTCAAAGTTCAAAGAGAGG 59.558 37.037 0.00 0.00 32.48 3.69
5977 8992 8.279103 GTGTGATAGTTCAAAGTTCAAAGAGAG 58.721 37.037 0.00 0.00 32.48 3.20
5978 8993 7.987458 AGTGTGATAGTTCAAAGTTCAAAGAGA 59.013 33.333 0.00 0.00 32.48 3.10
6082 9097 5.645497 ACCACAGAATATTGAAGTTCTCTGC 59.355 40.000 15.41 0.00 34.89 4.26
6099 9114 2.614983 GGTTTCTTGCGTTTACCACAGA 59.385 45.455 0.00 0.00 0.00 3.41
6361 9388 2.202797 CAGGTCGGCAGTGGATCG 60.203 66.667 0.00 0.00 0.00 3.69
6369 9396 2.110213 GTTGTGACCAGGTCGGCA 59.890 61.111 15.24 13.13 39.03 5.69
6408 9437 3.485877 GGATGCTTACGCTTCATGTGTTC 60.486 47.826 8.97 0.00 40.88 3.18
6449 9478 1.338105 TGATCCAGTTGTCTCTTGCCG 60.338 52.381 0.00 0.00 0.00 5.69
6487 9516 0.390866 CCAGCTTGCATCACTCGTCT 60.391 55.000 0.00 0.00 0.00 4.18
6527 9556 2.125673 CCTTCGTCGCCGTCCAAT 60.126 61.111 0.00 0.00 35.01 3.16
6639 9668 0.391263 AATTGGAGCTTCGGTCGACC 60.391 55.000 25.28 25.28 0.00 4.79
6680 9715 2.294195 TGGGAATACTCCTTGGGATCCA 60.294 50.000 15.23 0.00 42.05 3.41
6700 9735 5.967674 GCATCTTCAATCAATTACTTCCGTG 59.032 40.000 0.00 0.00 0.00 4.94
6702 9737 6.122850 TGCATCTTCAATCAATTACTTCCG 57.877 37.500 0.00 0.00 0.00 4.30
6708 9743 9.304731 GCAATTTACTGCATCTTCAATCAATTA 57.695 29.630 0.00 0.00 42.17 1.40
6741 9776 1.273606 CTTGAGGCGAGGAAGAACAGA 59.726 52.381 0.00 0.00 0.00 3.41
6826 9861 0.247736 GTCGGACAGAACAGCCAGAT 59.752 55.000 2.62 0.00 0.00 2.90
6829 9864 2.741092 GGTCGGACAGAACAGCCA 59.259 61.111 10.76 0.00 36.33 4.75
6830 9865 2.432628 CGGTCGGACAGAACAGCC 60.433 66.667 10.76 0.00 35.97 4.85
6831 9866 2.432628 CCGGTCGGACAGAACAGC 60.433 66.667 10.76 0.00 35.97 4.40
6907 9942 2.111043 CGTCATCCATTCCGGGGG 59.889 66.667 0.00 0.70 34.36 5.40
6908 9943 2.111043 CCGTCATCCATTCCGGGG 59.889 66.667 0.00 0.00 36.84 5.73
6909 9944 2.591715 GCCGTCATCCATTCCGGG 60.592 66.667 0.00 0.00 40.74 5.73
6910 9945 2.358193 TACGCCGTCATCCATTCCGG 62.358 60.000 0.00 0.00 43.22 5.14
6911 9946 0.939577 CTACGCCGTCATCCATTCCG 60.940 60.000 0.00 0.00 0.00 4.30
6912 9947 0.104304 ACTACGCCGTCATCCATTCC 59.896 55.000 0.00 0.00 0.00 3.01
6913 9948 1.209128 CACTACGCCGTCATCCATTC 58.791 55.000 0.00 0.00 0.00 2.67
6914 9949 0.535335 ACACTACGCCGTCATCCATT 59.465 50.000 0.00 0.00 0.00 3.16
6915 9950 0.179111 CACACTACGCCGTCATCCAT 60.179 55.000 0.00 0.00 0.00 3.41
6916 9951 1.214325 CACACTACGCCGTCATCCA 59.786 57.895 0.00 0.00 0.00 3.41
6917 9952 1.518572 CCACACTACGCCGTCATCC 60.519 63.158 0.00 0.00 0.00 3.51
6918 9953 0.525668 CTCCACACTACGCCGTCATC 60.526 60.000 0.00 0.00 0.00 2.92
6919 9954 1.511305 CTCCACACTACGCCGTCAT 59.489 57.895 0.00 0.00 0.00 3.06
6920 9955 2.959372 CTCCACACTACGCCGTCA 59.041 61.111 0.00 0.00 0.00 4.35
6921 9956 2.506438 GCTCCACACTACGCCGTC 60.506 66.667 0.00 0.00 0.00 4.79
6922 9957 4.065281 GGCTCCACACTACGCCGT 62.065 66.667 0.00 0.00 32.22 5.68
7005 10041 2.349590 CATCGCTTCACACCTTGATCA 58.650 47.619 0.00 0.00 32.84 2.92
7057 10093 3.387947 GCAGCTTGCAGGCCCAAT 61.388 61.111 18.27 0.00 44.26 3.16
7085 10121 1.466167 CGGTTCAGAGCAACATTCCTG 59.534 52.381 0.00 0.00 0.00 3.86
7302 10338 2.166664 GAGACTACAACCTAGGCACAGG 59.833 54.545 9.30 3.79 41.87 4.00
7303 10339 3.093057 AGAGACTACAACCTAGGCACAG 58.907 50.000 9.30 3.68 0.00 3.66
7512 10555 6.209192 ACTGTGGATCAATTGTCTGCAATAAA 59.791 34.615 5.13 0.00 43.89 1.40
7636 10679 1.209019 AGTCAGAATGCAGCCTCGAAT 59.791 47.619 0.00 0.00 34.76 3.34
7736 10779 1.152694 TGCTTTGTGAAGGGCAGCT 60.153 52.632 0.00 0.00 33.34 4.24
7740 10783 1.538047 TCATCTGCTTTGTGAAGGGC 58.462 50.000 0.00 0.00 33.34 5.19
7821 10864 5.242615 TGCAGCACAAAATACAAACCAGATA 59.757 36.000 0.00 0.00 0.00 1.98
7826 10869 2.799978 GGTGCAGCACAAAATACAAACC 59.200 45.455 26.78 0.97 35.86 3.27
7871 10914 6.601613 CCCATTCAGCAGTAAACCAATAACTA 59.398 38.462 0.00 0.00 0.00 2.24
7923 10966 5.128171 ACAAGTTCGCATTACCTCATACCTA 59.872 40.000 0.00 0.00 0.00 3.08
7988 11031 6.472016 TCACAAGTTTGCATTACCTCATAGA 58.528 36.000 0.00 0.00 0.00 1.98
8065 11108 3.628942 CAGCCAACTAAGCAGCAATCATA 59.371 43.478 0.00 0.00 0.00 2.15
8212 11409 9.277783 CAAGTACTCCCTCCATAAAGAAATATG 57.722 37.037 0.00 0.00 33.85 1.78
8246 11443 6.762187 AGCAATCACATCTCTGATGAAAGTAG 59.238 38.462 13.63 1.92 30.92 2.57
8250 11447 5.392703 GCAAGCAATCACATCTCTGATGAAA 60.393 40.000 13.63 2.70 30.92 2.69
8255 11452 2.362736 GGCAAGCAATCACATCTCTGA 58.637 47.619 0.00 0.00 0.00 3.27
8281 11478 1.066143 TCGGAACTGAGGGAGCATTTC 60.066 52.381 0.00 0.00 0.00 2.17
8286 11483 2.168728 AGTAAATCGGAACTGAGGGAGC 59.831 50.000 0.00 0.00 0.00 4.70
8287 11484 4.184629 CAAGTAAATCGGAACTGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
8289 11486 3.933332 GACAAGTAAATCGGAACTGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
8290 11487 3.612860 CGACAAGTAAATCGGAACTGAGG 59.387 47.826 0.00 0.00 34.67 3.86
8291 11488 4.090066 CACGACAAGTAAATCGGAACTGAG 59.910 45.833 0.00 0.00 42.67 3.35
8292 11489 3.985279 CACGACAAGTAAATCGGAACTGA 59.015 43.478 0.00 0.00 42.67 3.41
8293 11490 3.122948 CCACGACAAGTAAATCGGAACTG 59.877 47.826 0.00 0.00 42.67 3.16
8294 11491 3.243975 ACCACGACAAGTAAATCGGAACT 60.244 43.478 0.00 0.00 42.67 3.01
8295 11492 3.062042 ACCACGACAAGTAAATCGGAAC 58.938 45.455 0.00 0.00 42.67 3.62
8296 11493 3.389925 ACCACGACAAGTAAATCGGAA 57.610 42.857 0.00 0.00 42.67 4.30
8297 11494 3.389925 AACCACGACAAGTAAATCGGA 57.610 42.857 0.00 0.00 42.67 4.55
8298 11495 4.477302 AAAACCACGACAAGTAAATCGG 57.523 40.909 0.00 0.00 42.67 4.18
8299 11496 6.219302 ACTAAAACCACGACAAGTAAATCG 57.781 37.500 0.00 0.00 43.97 3.34
8300 11497 7.632721 TGAACTAAAACCACGACAAGTAAATC 58.367 34.615 0.00 0.00 0.00 2.17
8301 11498 7.556733 TGAACTAAAACCACGACAAGTAAAT 57.443 32.000 0.00 0.00 0.00 1.40
8302 11499 6.981762 TGAACTAAAACCACGACAAGTAAA 57.018 33.333 0.00 0.00 0.00 2.01
8303 11500 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
8304 11501 6.981762 TTTGAACTAAAACCACGACAAGTA 57.018 33.333 0.00 0.00 0.00 2.24
8305 11502 5.883503 TTTGAACTAAAACCACGACAAGT 57.116 34.783 0.00 0.00 0.00 3.16
8306 11503 6.974033 GTTTTTGAACTAAAACCACGACAAG 58.026 36.000 11.38 0.00 40.46 3.16
8307 11504 6.931243 GTTTTTGAACTAAAACCACGACAA 57.069 33.333 11.38 0.00 40.46 3.18
8315 11512 5.323105 TCGTCGTGGTTTTTGAACTAAAAC 58.677 37.500 13.17 13.17 43.78 2.43
8316 11513 5.122082 ACTCGTCGTGGTTTTTGAACTAAAA 59.878 36.000 0.00 0.00 36.51 1.52
8317 11514 4.630940 ACTCGTCGTGGTTTTTGAACTAAA 59.369 37.500 0.00 0.00 0.00 1.85
8318 11515 4.183101 ACTCGTCGTGGTTTTTGAACTAA 58.817 39.130 0.00 0.00 0.00 2.24
8319 11516 3.784338 ACTCGTCGTGGTTTTTGAACTA 58.216 40.909 0.00 0.00 0.00 2.24
8320 11517 2.624636 ACTCGTCGTGGTTTTTGAACT 58.375 42.857 0.00 0.00 0.00 3.01
8321 11518 4.519191 TTACTCGTCGTGGTTTTTGAAC 57.481 40.909 0.00 0.00 0.00 3.18
8322 11519 5.556758 CGATTTACTCGTCGTGGTTTTTGAA 60.557 40.000 0.00 0.00 42.56 2.69
8323 11520 4.084952 CGATTTACTCGTCGTGGTTTTTGA 60.085 41.667 0.00 0.00 42.56 2.69
8324 11521 4.138817 CGATTTACTCGTCGTGGTTTTTG 58.861 43.478 0.00 0.00 42.56 2.44
8325 11522 3.184986 CCGATTTACTCGTCGTGGTTTTT 59.815 43.478 0.00 0.00 46.18 1.94
8326 11523 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
8327 11524 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
8328 11525 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
8329 11526 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
8330 11527 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
8331 11528 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
8332 11529 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
8333 11530 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
8334 11531 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
8335 11532 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
8337 11534 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
8338 11535 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
8339 11536 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
8340 11537 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
8341 11538 1.856629 TACTCCCTCCGTTCCGATTT 58.143 50.000 0.00 0.00 0.00 2.17
8342 11539 1.479730 GTTACTCCCTCCGTTCCGATT 59.520 52.381 0.00 0.00 0.00 3.34
8343 11540 1.109609 GTTACTCCCTCCGTTCCGAT 58.890 55.000 0.00 0.00 0.00 4.18
8344 11541 0.038744 AGTTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
8345 11542 0.172803 CAGTTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
8346 11543 1.204231 GACAGTTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
8347 11544 1.891150 TGACAGTTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
8348 11545 1.893801 CTGACAGTTACTCCCTCCGTT 59.106 52.381 0.00 0.00 0.00 4.44
8349 11546 1.546961 CTGACAGTTACTCCCTCCGT 58.453 55.000 0.00 0.00 0.00 4.69
8350 11547 0.173708 GCTGACAGTTACTCCCTCCG 59.826 60.000 3.99 0.00 0.00 4.63
8351 11548 1.267121 TGCTGACAGTTACTCCCTCC 58.733 55.000 3.99 0.00 0.00 4.30
8352 11549 3.618690 AATGCTGACAGTTACTCCCTC 57.381 47.619 3.99 0.00 0.00 4.30
8353 11550 3.584848 AGAAATGCTGACAGTTACTCCCT 59.415 43.478 3.99 0.00 33.46 4.20
8354 11551 3.944087 AGAAATGCTGACAGTTACTCCC 58.056 45.455 3.99 0.00 33.46 4.30
8355 11552 5.948992 AAAGAAATGCTGACAGTTACTCC 57.051 39.130 3.99 0.00 33.46 3.85
8356 11553 7.196331 ACAAAAAGAAATGCTGACAGTTACTC 58.804 34.615 3.99 0.00 33.46 2.59
8357 11554 7.100458 ACAAAAAGAAATGCTGACAGTTACT 57.900 32.000 3.99 0.00 33.46 2.24
8358 11555 7.275560 ACAACAAAAAGAAATGCTGACAGTTAC 59.724 33.333 3.99 0.00 33.46 2.50
8359 11556 7.319646 ACAACAAAAAGAAATGCTGACAGTTA 58.680 30.769 3.99 0.00 33.46 2.24
8360 11557 6.165577 ACAACAAAAAGAAATGCTGACAGTT 58.834 32.000 3.99 0.00 36.65 3.16
8361 11558 5.723295 ACAACAAAAAGAAATGCTGACAGT 58.277 33.333 3.99 0.00 0.00 3.55
8362 11559 6.471839 CAACAACAAAAAGAAATGCTGACAG 58.528 36.000 0.00 0.00 0.00 3.51
8394 11591 7.533426 AGCATCTTGTGACATAAGAAATCAAC 58.467 34.615 17.26 5.33 37.67 3.18
8425 11622 2.684881 GTGGCACTTATCATGGTCCAAG 59.315 50.000 11.13 0.00 0.00 3.61
8457 11654 3.637432 GTTCGAAATTGCCATGTGTTCA 58.363 40.909 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.