AutoCloner

Multiple sequence alignment - TraesCS5B01G115400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G115400	chr5B	100.000	5785	0	0	1	5785	192384343	192378559	0.000000e+00	10683.0
1	TraesCS5B01G115400	chr5B	91.977	511	30	8	5283	5785	662049489	662049996	0.000000e+00	706.0
2	TraesCS5B01G115400	chr5B	92.434	489	36	1	5296	5783	10395447	10394959	0.000000e+00	697.0
3	TraesCS5B01G115400	chr5B	78.279	488	93	12	1124	1604	604164075	604163594	9.420000e-78	302.0
4	TraesCS5B01G115400	chr5B	78.444	450	83	14	1144	1586	153503427	153502985	1.230000e-71	281.0
5	TraesCS5B01G115400	chr5D	95.511	3319	78	20	2046	5298	177683236	177679923	0.000000e+00	5238.0
6	TraesCS5B01G115400	chr5D	95.617	2076	45	8	1	2044	177685334	177683273	0.000000e+00	3288.0
7	TraesCS5B01G115400	chr5D	93.528	479	28	3	5301	5777	380012338	380011861	0.000000e+00	710.0
8	TraesCS5B01G115400	chr5D	78.000	450	85	14	1144	1586	184873226	184873668	2.660000e-68	270.0
9	TraesCS5B01G115400	chr5A	95.165	3330	86	23	2040	5298	191037315	191040640	0.000000e+00	5188.0
10	TraesCS5B01G115400	chr5A	95.695	2044	46	10	31	2044	191035252	191037283	0.000000e+00	3249.0
11	TraesCS5B01G115400	chr5A	77.542	472	94	11	1124	1589	611652918	611652453	2.050000e-69	274.0
12	TraesCS5B01G115400	chr4D	90.235	553	48	4	1051	1597	85579264	85579816	0.000000e+00	717.0
13	TraesCS5B01G115400	chr4D	92.975	484	31	3	5296	5777	173604702	173604220	0.000000e+00	702.0
14	TraesCS5B01G115400	chr4A	90.257	544	49	2	1054	1597	499341600	499342139	0.000000e+00	708.0
15	TraesCS5B01G115400	chr4A	91.852	135	9	2	3452	3586	499343375	499343507	2.750000e-43	187.0
16	TraesCS5B01G115400	chr1D	92.600	500	26	5	5296	5785	297371349	297370851	0.000000e+00	708.0
17	TraesCS5B01G115400	chr3D	93.168	483	30	3	5298	5777	131596010	131595528	0.000000e+00	706.0
18	TraesCS5B01G115400	chr7D	93.803	468	29	0	5309	5776	557845072	557845539	0.000000e+00	704.0
19	TraesCS5B01G115400	chr4B	90.074	544	50	2	1054	1597	122520587	122521126	0.000000e+00	702.0
20	TraesCS5B01G115400	chr4B	92.354	497	31	4	5296	5785	131347944	131347448	0.000000e+00	701.0
21	TraesCS5B01G115400	chr1B	92.769	484	34	1	5301	5783	417466323	417465840	0.000000e+00	699.0
22	TraesCS5B01G115400	chr2D	91.566	83	7	0	5216	5298	80043463	80043545	1.320000e-21	115.0
23	TraesCS5B01G115400	chr2D	91.228	57	4	1	1797	1852	606115760	606115816	6.220000e-10	76.8
24	TraesCS5B01G115400	chr2B	90.909	66	3	3	1789	1852	622914128	622914064	1.030000e-12	86.1
25	TraesCS5B01G115400	chr2B	91.667	60	1	1	1810	1865	358674792	358674733	4.810000e-11	80.5
26	TraesCS5B01G115400	chr7B	92.857	56	2	2	1797	1852	482485048	482484995	4.810000e-11	80.5
27	TraesCS5B01G115400	chr3B	96.000	50	1	1	1803	1852	628472956	628473004	4.810000e-11	80.5
28	TraesCS5B01G115400	chr2A	100.000	43	0	0	1810	1852	373868958	373869000	4.810000e-11	80.5
29	TraesCS5B01G115400	chr6B	91.228	57	3	1	1796	1852	164040166	164040220	6.220000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G115400	chr5B	192378559	192384343	5784	True	10683.0	10683	100.0000	1	5785	1	chr5B.!!$R3	5784
1	TraesCS5B01G115400	chr5B	662049489	662049996	507	False	706.0	706	91.9770	5283	5785	1	chr5B.!!$F1	502
2	TraesCS5B01G115400	chr5D	177679923	177685334	5411	True	4263.0	5238	95.5640	1	5298	2	chr5D.!!$R2	5297
3	TraesCS5B01G115400	chr5A	191035252	191040640	5388	False	4218.5	5188	95.4300	31	5298	2	chr5A.!!$F1	5267
4	TraesCS5B01G115400	chr4D	85579264	85579816	552	False	717.0	717	90.2350	1051	1597	1	chr4D.!!$F1	546
5	TraesCS5B01G115400	chr4A	499341600	499343507	1907	False	447.5	708	91.0545	1054	3586	2	chr4A.!!$F1	2532
6	TraesCS5B01G115400	chr4B	122520587	122521126	539	False	702.0	702	90.0740	1054	1597	1	chr4B.!!$F1	543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
94	95	2.365617	AGAACAGCTTCAGACGAAAGGA	59.634	45.455	0.00	0.00	0.00	3.36	F
95	96	2.447244	ACAGCTTCAGACGAAAGGAG	57.553	50.000	0.00	0.00	0.00	3.69	F
918	965	2.594592	GGTTGTTGGCGTGGCTCT	60.595	61.111	0.00	0.00	0.00	4.09	F
2220	2421	2.772568	TGACACAATGCCAAAGTTCG	57.227	45.000	0.00	0.00	0.00	3.95	F
2580	2787	3.837213	GCACTGAGCAGCAAAAGAATA	57.163	42.857	0.00	0.00	44.79	1.75	F
3400	3616	3.890145	CATCTCCGGATGCAGAGAG	57.110	57.895	3.57	4.55	42.19	3.20	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1260	1316	1.066422	GATCTCGCGCCAGACATCA	59.934	57.895	6.94	0.00	0.00	3.07	R
1539	1595	2.203788	TTGAGTGGGGCGTCCTCT	60.204	61.111	5.77	4.81	41.66	3.69	R
2330	2537	0.038166	AGCAATTTTCAGCGGGGAGA	59.962	50.000	0.00	0.00	35.48	3.71	R
3839	4062	1.815003	CAAGGCCCACTGACAAGATTC	59.185	52.381	0.00	0.00	0.00	2.52	R
4237	4460	1.001974	TGCTGGACTGCAATTACGACT	59.998	47.619	1.20	0.00	40.29	4.18	R
5356	5634	0.310543	TGCATGAACTGTTGAACGGC	59.689	50.000	3.64	0.00	0.00	5.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
88	89	3.849911	TGGAATAGAACAGCTTCAGACG	58.150	45.455	0.00	0.00	0.00	4.18
94	95	2.365617	AGAACAGCTTCAGACGAAAGGA	59.634	45.455	0.00	0.00	0.00	3.36
95	96	2.447244	ACAGCTTCAGACGAAAGGAG	57.553	50.000	0.00	0.00	0.00	3.69
137	138	9.569122	TGTTAGGGGCTTGTATTTCTTTATATC	57.431	33.333	0.00	0.00	0.00	1.63
173	174	7.872163	TGTTTGATTCACAGCATTGTAATTC	57.128	32.000	0.00	0.00	35.25	2.17
174	175	7.432059	TGTTTGATTCACAGCATTGTAATTCA	58.568	30.769	0.00	0.00	35.25	2.57
854	901	6.958767	TCCCTGTAAATTTCCTAGGAAAGAG	58.041	40.000	34.12	21.99	45.66	2.85
918	965	2.594592	GGTTGTTGGCGTGGCTCT	60.595	61.111	0.00	0.00	0.00	4.09
1684	1766	9.703892	TTGGTGTTAAATTGATCTTGGTATTTG	57.296	29.630	0.00	0.00	0.00	2.32
1883	2040	7.120726	GGAGTACTGTAAATGCTATGTGGTTTT	59.879	37.037	0.00	0.00	0.00	2.43
1934	2097	4.942761	ACTCTTTTACACAACGGAGGTA	57.057	40.909	0.00	0.00	0.00	3.08
1990	2154	6.204852	TGTTGCCCTATAATCTGATGGAAT	57.795	37.500	0.00	0.00	0.00	3.01
2012	2176	9.651718	GGAATTTCATAAAGTCGCAATAAGTAG	57.348	33.333	0.00	0.00	36.41	2.57
2051	2252	6.932947	AGAGGATAAGTTTGGTACAGTACAC	58.067	40.000	12.89	2.57	42.39	2.90
2093	2294	5.068591	GTGGTTTCCAGTTATTGACTTTGGT	59.931	40.000	0.00	0.00	36.10	3.67
2121	2322	7.136772	GGAAACATTAGCAATTTCGGGTATAC	58.863	38.462	0.00	0.00	33.91	1.47
2220	2421	2.772568	TGACACAATGCCAAAGTTCG	57.227	45.000	0.00	0.00	0.00	3.95
2265	2466	7.246171	AGTACCTTAGTTCATGAGACACAAT	57.754	36.000	0.00	0.00	0.00	2.71
2330	2537	6.071952	ACTGCGATGTATGGATTCTTTTTGTT	60.072	34.615	0.00	0.00	0.00	2.83
2533	2740	5.233957	TCGAGTCAATAACATGCCAAATG	57.766	39.130	0.00	0.00	0.00	2.32
2557	2764	4.141620	ACAATACTTCCTGGCTCCATACAG	60.142	45.833	0.00	0.00	34.54	2.74
2580	2787	3.837213	GCACTGAGCAGCAAAAGAATA	57.163	42.857	0.00	0.00	44.79	1.75
3400	3616	3.890145	CATCTCCGGATGCAGAGAG	57.110	57.895	3.57	4.55	42.19	3.20
3667	3888	5.398169	CACTTCAGTAGAGTTAGTGCTCTG	58.602	45.833	5.92	0.00	44.71	3.35
3780	4001	8.682016	GTCTCAAGTGAAATTTGTTTCATAACG	58.318	33.333	6.84	0.00	42.20	3.18
3786	4007	8.349245	AGTGAAATTTGTTTCATAACGATCACA	58.651	29.630	6.84	0.00	42.20	3.58
3956	4179	5.233988	TGTGGTAATATTTTTGCAACTGCC	58.766	37.500	0.00	0.00	41.18	4.85
4237	4460	4.561530	GCTACAGTCTTGTTGAGTCCATCA	60.562	45.833	0.00	0.00	38.76	3.07
4293	4516	7.549839	AGTAGTACGCACCATTGAGTTTTATA	58.450	34.615	0.00	0.00	37.00	0.98
4311	4534	8.515414	AGTTTTATACATCTTTTTCAGGCTGAC	58.485	33.333	18.55	0.00	0.00	3.51
4320	4543	5.302568	TCTTTTTCAGGCTGACATTGACAAT	59.697	36.000	18.55	0.00	0.00	2.71
4356	4579	4.455606	ACTATGGTGAATTCTTAGCAGCC	58.544	43.478	7.05	0.00	0.00	4.85
4521	4744	5.012458	TGAGGATATGATCAAGGATGTGGAC	59.988	44.000	0.00	0.00	0.00	4.02
4571	4794	4.952957	TGTTTTTCACCACTCCATTCTTCA	59.047	37.500	0.00	0.00	0.00	3.02
4680	4903	4.473196	TGATGAGAAAGGGTAATGCTGGTA	59.527	41.667	0.00	0.00	0.00	3.25
4890	5113	1.197721	CACTGGGACGCTGTTGAATTC	59.802	52.381	0.00	0.00	0.00	2.17
4980	5204	8.028938	GTGTTTGACATGCCATATAAGTTTCTT	58.971	33.333	0.00	0.00	0.00	2.52
4981	5205	9.237187	TGTTTGACATGCCATATAAGTTTCTTA	57.763	29.630	0.00	0.00	0.00	2.10
5148	5395	3.635836	TGAAAATGCACAGGTGAACATGA	59.364	39.130	0.00	0.00	0.00	3.07
5154	5401	2.756760	GCACAGGTGAACATGATTCCAT	59.243	45.455	0.00	0.00	0.00	3.41
5178	5428	4.917415	GCGCACCCACATGAATAATAAATC	59.083	41.667	0.30	0.00	0.00	2.17
5311	5589	7.659290	ATTTTGTCTTTCGAAAACACTAACG	57.341	32.000	18.90	4.79	33.70	3.18
5356	5634	0.460109	TCAATCACACGCCTCCATCG	60.460	55.000	0.00	0.00	0.00	3.84
5368	5646	0.670546	CTCCATCGCCGTTCAACAGT	60.671	55.000	0.00	0.00	0.00	3.55
5370	5648	0.165944	CCATCGCCGTTCAACAGTTC	59.834	55.000	0.00	0.00	0.00	3.01
5371	5649	0.865111	CATCGCCGTTCAACAGTTCA	59.135	50.000	0.00	0.00	0.00	3.18
5377	5655	1.660052	CCGTTCAACAGTTCATGCACG	60.660	52.381	0.00	0.00	0.00	5.34
5387	5665	1.199789	GTTCATGCACGAATCTTGGCA	59.800	47.619	0.00	0.00	41.00	4.92
5389	5667	0.521867	CATGCACGAATCTTGGCACG	60.522	55.000	0.00	0.00	39.34	5.34
5419	5697	1.301423	TTTTGTGTGCCACGTAGGAC	58.699	50.000	0.00	0.00	41.22	3.85
5453	5731	0.667792	GTGTGTGAGAGAGTTCGCCC	60.668	60.000	0.00	0.00	0.00	6.13
5495	5773	3.353836	CAACGGTTGCCACTCGGG	61.354	66.667	8.09	0.00	40.85	5.14
5512	5790	2.270850	GGGCATGCGGTGGAACTA	59.729	61.111	12.44	0.00	36.74	2.24
5603	5888	4.039973	ACTCACGGTTCCATTTACTCTCAA	59.960	41.667	0.00	0.00	0.00	3.02
5671	5956	2.103340	GCGAGAGGAGAAGGCGAC	59.897	66.667	0.00	0.00	0.00	5.19
5694	5979	3.398353	GAGGCGGAAGAGTCGACGG	62.398	68.421	10.46	0.00	41.14	4.79
5737	6022	2.657237	CCGGACCAGAGCGTCTTT	59.343	61.111	0.00	0.00	33.07	2.52
5739	6024	2.383527	CGGACCAGAGCGTCTTTGC	61.384	63.158	0.00	0.00	33.07	3.68
5750	6035	2.032528	TCTTTGCCGGAGTGCCTG	59.967	61.111	5.05	0.00	0.00	4.85
5780	6065	0.947244	GTAATGCTCCTTCCCATGCG	59.053	55.000	0.00	0.00	0.00	4.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
54	55	7.254218	GCTGTTCTATTCCAAAATATTGCTTGC	60.254	37.037	0.00	0.00	35.10	4.01
88	89	4.957296	TCTAACACAACAGACCTCCTTTC	58.043	43.478	0.00	0.00	0.00	2.62
94	95	5.280011	CCCTAACATCTAACACAACAGACCT	60.280	44.000	0.00	0.00	0.00	3.85
95	96	4.935808	CCCTAACATCTAACACAACAGACC	59.064	45.833	0.00	0.00	0.00	3.85
137	138	5.346551	TGTGAATCAAACAACTATCCGTACG	59.653	40.000	8.69	8.69	0.00	3.67
215	216	2.249844	AACACGAGTCGGTGGAATTT	57.750	45.000	18.30	1.00	42.23	1.82
854	901	2.494918	CGTCCACGATCCCTGGTC	59.505	66.667	0.00	0.00	43.02	4.02
918	965	2.343101	CTTGTCAGAAAATACCGCGGA	58.657	47.619	35.90	16.57	0.00	5.54
1260	1316	1.066422	GATCTCGCGCCAGACATCA	59.934	57.895	6.94	0.00	0.00	3.07
1539	1595	2.203788	TTGAGTGGGGCGTCCTCT	60.204	61.111	5.77	4.81	41.66	3.69
1684	1766	2.287009	GGCGTATTGATAAGGTTGCTGC	60.287	50.000	0.00	0.00	0.00	5.25
1852	1940	2.910319	AGCATTTACAGTACTCCCACCA	59.090	45.455	0.00	0.00	0.00	4.17
1990	2154	9.431887	AGAACTACTTATTGCGACTTTATGAAA	57.568	29.630	0.00	0.00	0.00	2.69
2012	2176	6.495526	ACTTATCCTCTAATCCAGGCTAGAAC	59.504	42.308	0.00	0.00	0.00	3.01
2051	2252	4.526970	ACCACTTTCATAGCCCACAATAG	58.473	43.478	0.00	0.00	0.00	1.73
2093	2294	4.322349	CCCGAAATTGCTAATGTTTCCCAA	60.322	41.667	0.00	0.00	0.00	4.12
2206	2407	1.003262	CGCACCGAACTTTGGCATTG	61.003	55.000	0.00	0.00	0.00	2.82
2220	2421	1.134491	AGTGGATTAGTTAGCCGCACC	60.134	52.381	0.00	0.00	34.71	5.01
2330	2537	0.038166	AGCAATTTTCAGCGGGGAGA	59.962	50.000	0.00	0.00	35.48	3.71
2472	2679	1.167851	GCCAGTGATTTAGCTGCACA	58.832	50.000	1.02	0.00	35.08	4.57
2533	2740	3.567478	ATGGAGCCAGGAAGTATTGTC	57.433	47.619	0.00	0.00	0.00	3.18
2557	2764	2.151049	CTTTTGCTGCTCAGTGCCCC	62.151	60.000	0.00	0.00	42.00	5.80
2580	2787	9.736023	GTTCTTGTTTCTGTAATTCTGTTTCAT	57.264	29.630	0.00	0.00	0.00	2.57
2660	2867	6.150976	CCTCAAATACACATTTAACAGCTCCA	59.849	38.462	0.00	0.00	32.96	3.86
3364	3580	5.233476	GGAGATGCATGCAACATTGTTATTG	59.767	40.000	26.68	2.03	0.00	1.90
3542	3763	4.438472	GCCATCTTCTTCAGCTTGTTCATC	60.438	45.833	0.00	0.00	0.00	2.92
3620	3841	7.385205	GTGCAAAGACAGAGTAGTGAATTTAGA	59.615	37.037	0.00	0.00	0.00	2.10
3667	3888	7.996385	AGGAGGCAATAATGTAATGTTGTAAC	58.004	34.615	0.00	0.00	0.00	2.50
3780	4001	5.856126	TTTCCTTCGTTACATGTGTGATC	57.144	39.130	9.11	0.00	0.00	2.92
3786	4007	7.687941	AATCTCAATTTCCTTCGTTACATGT	57.312	32.000	2.69	2.69	0.00	3.21
3839	4062	1.815003	CAAGGCCCACTGACAAGATTC	59.185	52.381	0.00	0.00	0.00	2.52
3956	4179	4.414852	CACTTTGGTGCCATCTTTATTCG	58.585	43.478	0.00	0.00	36.61	3.34
3971	4194	5.046910	AGATAATTCACGTTGCACTTTGG	57.953	39.130	0.00	0.00	0.00	3.28
4237	4460	1.001974	TGCTGGACTGCAATTACGACT	59.998	47.619	1.20	0.00	40.29	4.18
4293	4516	4.828939	TCAATGTCAGCCTGAAAAAGATGT	59.171	37.500	0.00	0.00	0.00	3.06
4311	4534	3.124128	CGATGGATCCGCTATTGTCAATG	59.876	47.826	7.39	0.16	0.00	2.82
4890	5113	8.622157	TGCTCAACTATTTAGCACTACTAGTAG	58.378	37.037	25.30	25.30	41.15	2.57
5007	5231	8.073768	ACAACAAAAGTTGATACGGATACAAAG	58.926	33.333	14.55	0.00	37.72	2.77
5092	5339	8.479313	TGTCTCTATTACAAGCACATGTTTAG	57.521	34.615	0.00	0.00	34.75	1.85
5123	5370	5.981088	TGTTCACCTGTGCATTTTCATAT	57.019	34.783	0.00	0.00	0.00	1.78
5126	5373	3.635836	TCATGTTCACCTGTGCATTTTCA	59.364	39.130	0.00	0.00	0.00	2.69
5133	5380	2.161855	TGGAATCATGTTCACCTGTGC	58.838	47.619	9.31	0.00	0.00	4.57
5148	5395	1.380246	ATGTGGGTGCGCATGGAAT	60.380	52.632	15.91	1.08	0.00	3.01
5154	5401	1.761449	ATTATTCATGTGGGTGCGCA	58.239	45.000	5.66	5.66	0.00	6.09
5201	5451	9.014297	ACTCGAGAATACCAGATTTTCAATTTT	57.986	29.630	21.68	0.00	0.00	1.82
5205	5455	6.697395	TCACTCGAGAATACCAGATTTTCAA	58.303	36.000	21.68	0.00	0.00	2.69
5206	5456	6.280855	TCACTCGAGAATACCAGATTTTCA	57.719	37.500	21.68	0.00	0.00	2.69
5207	5457	7.036220	TCTTCACTCGAGAATACCAGATTTTC	58.964	38.462	21.68	0.00	0.00	2.29
5211	5461	6.153680	ACTTTCTTCACTCGAGAATACCAGAT	59.846	38.462	21.68	0.00	33.48	2.90
5212	5462	5.477291	ACTTTCTTCACTCGAGAATACCAGA	59.523	40.000	21.68	8.25	33.48	3.86
5213	5463	5.715070	ACTTTCTTCACTCGAGAATACCAG	58.285	41.667	21.68	8.80	33.48	4.00
5214	5464	5.723672	ACTTTCTTCACTCGAGAATACCA	57.276	39.130	21.68	0.00	33.48	3.25
5223	5501	5.059832	CGTCAGATTGTACTTTCTTCACTCG	59.940	44.000	0.00	0.00	0.00	4.18
5273	5551	9.306280	CGAAAGACAAAATATGTGCTATATTCG	57.694	33.333	7.08	0.00	44.12	3.34
5327	5605	2.420022	GCGTGTGATTGAGTTGGCTAAT	59.580	45.455	0.00	0.00	0.00	1.73
5341	5619	4.451150	GGCGATGGAGGCGTGTGA	62.451	66.667	0.00	0.00	0.00	3.58
5356	5634	0.310543	TGCATGAACTGTTGAACGGC	59.689	50.000	3.64	0.00	0.00	5.68
5368	5646	1.199789	GTGCCAAGATTCGTGCATGAA	59.800	47.619	22.99	22.99	35.96	2.57
5370	5648	0.521867	CGTGCCAAGATTCGTGCATG	60.522	55.000	0.00	0.00	35.96	4.06
5371	5649	0.955428	ACGTGCCAAGATTCGTGCAT	60.955	50.000	0.00	0.00	35.96	3.96
5377	5655	1.000274	AGCCAAAACGTGCCAAGATTC	60.000	47.619	0.00	0.00	0.00	2.52
5387	5665	3.186119	CACACAAAATCAGCCAAAACGT	58.814	40.909	0.00	0.00	0.00	3.99
5389	5667	2.287644	GGCACACAAAATCAGCCAAAAC	59.712	45.455	0.00	0.00	44.59	2.43
5419	5697	2.171079	ACACCACACACGCGACTTG	61.171	57.895	15.93	9.11	0.00	3.16
5479	5757	4.636435	CCCCGAGTGGCAACCGTT	62.636	66.667	8.59	0.00	0.00	4.44
5495	5773	2.112815	GTAGTTCCACCGCATGCCC	61.113	63.158	13.15	0.00	0.00	5.36
5499	5777	1.165270	GCAAAGTAGTTCCACCGCAT	58.835	50.000	0.00	0.00	0.00	4.73
5580	5865	3.576982	TGAGAGTAAATGGAACCGTGAGT	59.423	43.478	0.00	0.00	0.00	3.41
5603	5888	4.134563	GTGGGTTGTGTGAGTAATGAAGT	58.865	43.478	0.00	0.00	0.00	3.01
5631	5916	4.333926	CCTTCTCTTCCAATCGAATGAACC	59.666	45.833	0.94	0.00	0.00	3.62
5637	5922	1.548719	TCGCCTTCTCTTCCAATCGAA	59.451	47.619	0.00	0.00	0.00	3.71
5671	5956	1.153667	GACTCTTCCGCCTCAGCAG	60.154	63.158	0.00	0.00	39.83	4.24
5672	5957	2.973899	GACTCTTCCGCCTCAGCA	59.026	61.111	0.00	0.00	39.83	4.41
5675	5960	2.687805	CGTCGACTCTTCCGCCTCA	61.688	63.158	14.70	0.00	0.00	3.86
5682	5967	1.743855	GCGAATGCCGTCGACTCTTC	61.744	60.000	14.70	9.55	43.86	2.87
5739	6024	2.110967	CAATCTGCAGGCACTCCGG	61.111	63.158	15.13	0.00	34.60	5.14
5750	6035	3.549794	AGGAGCATTACCTTCAATCTGC	58.450	45.455	0.00	0.00	33.55	4.26

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.