Multiple sequence alignment - TraesCS5B01G114700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G114700 chr5B 100.000 5831 0 0 1687 7517 187856810 187862640 0.000000e+00 10768.0
1 TraesCS5B01G114700 chr5B 100.000 1113 0 0 1 1113 187855124 187856236 0.000000e+00 2056.0
2 TraesCS5B01G114700 chr5B 97.059 102 3 0 2222 2323 187857237 187857338 1.000000e-38 172.0
3 TraesCS5B01G114700 chr5B 97.059 102 3 0 2114 2215 187857345 187857446 1.000000e-38 172.0
4 TraesCS5B01G114700 chr5B 94.118 102 5 1 6535 6635 523436179 523436280 3.630000e-33 154.0
5 TraesCS5B01G114700 chr5B 94.118 102 5 1 6535 6635 523525268 523525369 3.630000e-33 154.0
6 TraesCS5B01G114700 chr5B 92.523 107 4 4 6530 6634 492096586 492096690 4.700000e-32 150.0
7 TraesCS5B01G114700 chr5B 82.184 174 27 4 7018 7187 325963935 325963762 6.080000e-31 147.0
8 TraesCS5B01G114700 chr5A 96.538 2340 63 9 2011 4337 192426758 192424424 0.000000e+00 3856.0
9 TraesCS5B01G114700 chr5A 95.341 1803 55 15 4479 6277 192424423 192422646 0.000000e+00 2837.0
10 TraesCS5B01G114700 chr5A 89.951 607 36 14 522 1113 192428232 192427636 0.000000e+00 760.0
11 TraesCS5B01G114700 chr5A 89.141 617 40 17 513 1113 192429427 192428822 0.000000e+00 743.0
12 TraesCS5B01G114700 chr5A 89.439 303 16 12 7192 7483 192421810 192421513 1.190000e-97 368.0
13 TraesCS5B01G114700 chr5A 94.958 238 4 4 6322 6552 192422560 192422324 4.290000e-97 366.0
14 TraesCS5B01G114700 chr5A 92.827 237 9 4 6969 7199 192422148 192421914 3.360000e-88 337.0
15 TraesCS5B01G114700 chr5A 98.630 146 2 0 1807 1952 192427105 192426960 7.480000e-65 259.0
16 TraesCS5B01G114700 chr5A 98.039 102 2 0 2222 2323 192426655 192426554 2.160000e-40 178.0
17 TraesCS5B01G114700 chr5A 97.059 102 3 0 2114 2215 192426547 192426446 1.000000e-38 172.0
18 TraesCS5B01G114700 chr5A 97.826 92 2 0 6545 6636 51547342 51547433 7.810000e-35 159.0
19 TraesCS5B01G114700 chr5D 95.937 2363 60 9 1986 4337 171306776 171309113 0.000000e+00 3799.0
20 TraesCS5B01G114700 chr5D 95.072 1806 60 15 4479 6277 171309114 171310897 0.000000e+00 2815.0
21 TraesCS5B01G114700 chr5D 85.320 1015 70 29 142 1113 171305464 171306442 0.000000e+00 976.0
22 TraesCS5B01G114700 chr5D 91.781 584 29 11 6630 7199 171311212 171311790 0.000000e+00 795.0
23 TraesCS5B01G114700 chr5D 96.667 270 9 0 1687 1956 171306510 171306779 4.140000e-122 449.0
24 TraesCS5B01G114700 chr5D 96.596 235 4 2 6322 6552 171310983 171311217 3.290000e-103 387.0
25 TraesCS5B01G114700 chr5D 82.883 222 15 12 7189 7391 171311889 171312106 2.160000e-40 178.0
26 TraesCS5B01G114700 chr5D 97.059 102 3 0 2222 2323 171306904 171307005 1.000000e-38 172.0
27 TraesCS5B01G114700 chr5D 93.814 97 6 0 45 141 518872363 518872459 6.080000e-31 147.0
28 TraesCS5B01G114700 chr5D 97.619 84 2 0 2114 2197 171307012 171307095 2.190000e-30 145.0
29 TraesCS5B01G114700 chr3A 92.553 188 11 3 7015 7200 377235542 377235728 4.470000e-67 267.0
30 TraesCS5B01G114700 chr3A 87.692 65 4 3 7186 7246 156118055 156117991 1.050000e-08 73.1
31 TraesCS5B01G114700 chr3A 100.000 33 0 0 7214 7246 377235844 377235876 2.260000e-05 62.1
32 TraesCS5B01G114700 chr4B 91.111 180 11 3 7017 7191 351513180 351513001 9.750000e-59 239.0
33 TraesCS5B01G114700 chr4B 100.000 88 0 0 6549 6636 548118340 548118253 6.040000e-36 163.0
34 TraesCS5B01G114700 chr4B 98.889 90 1 0 6548 6637 29271923 29271834 2.170000e-35 161.0
35 TraesCS5B01G114700 chr4B 80.000 165 21 8 143 298 189809963 189810124 2.220000e-20 111.0
36 TraesCS5B01G114700 chr4B 89.231 65 3 3 7186 7246 351512909 351512845 2.250000e-10 78.7
37 TraesCS5B01G114700 chr4B 100.000 35 0 0 45 79 78660763 78660797 1.750000e-06 65.8
38 TraesCS5B01G114700 chr1B 90.270 185 12 4 7020 7199 612017197 612017014 3.510000e-58 237.0
39 TraesCS5B01G114700 chr1B 87.692 65 4 3 7186 7246 612016929 612016865 1.050000e-08 73.1
40 TraesCS5B01G114700 chr2D 88.947 190 15 4 7015 7199 109550373 109550561 5.870000e-56 230.0
41 TraesCS5B01G114700 chr7B 84.663 163 22 3 6732 6892 50358906 50358745 7.810000e-35 159.0
42 TraesCS5B01G114700 chr6B 95.960 99 2 2 6535 6633 702668732 702668828 7.810000e-35 159.0
43 TraesCS5B01G114700 chr3D 84.663 163 22 3 6732 6892 43646805 43646966 7.810000e-35 159.0
44 TraesCS5B01G114700 chr1A 95.960 99 3 1 6543 6640 69995976 69995878 7.810000e-35 159.0
45 TraesCS5B01G114700 chr6A 95.050 101 4 1 6543 6642 614304663 614304763 2.810000e-34 158.0
46 TraesCS5B01G114700 chr6A 100.000 35 0 0 45 79 427428785 427428751 1.750000e-06 65.8
47 TraesCS5B01G114700 chr4D 84.049 163 23 3 6732 6892 69497308 69497469 3.630000e-33 154.0
48 TraesCS5B01G114700 chr2B 82.822 163 25 3 6732 6892 59018911 59018750 7.860000e-30 143.0
49 TraesCS5B01G114700 chr3B 82.353 170 23 7 7015 7178 178481569 178481737 2.830000e-29 141.0
50 TraesCS5B01G114700 chr3B 82.609 161 23 4 7019 7175 478565232 478565391 3.660000e-28 137.0
51 TraesCS5B01G114700 chr3B 82.099 162 28 1 6732 6892 661158025 661157864 3.660000e-28 137.0
52 TraesCS5B01G114700 chrUn 81.988 161 28 1 6732 6891 85964520 85964680 1.320000e-27 135.0
53 TraesCS5B01G114700 chrUn 81.988 161 28 1 6732 6891 312297649 312297809 1.320000e-27 135.0
54 TraesCS5B01G114700 chr7D 87.826 115 14 0 6778 6892 601495156 601495270 1.320000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G114700 chr5B 187855124 187862640 7516 False 6412.000000 10768 100.000000 1 7517 2 chr5B.!!$F4 7516
1 TraesCS5B01G114700 chr5A 192421513 192429427 7914 True 987.600000 3856 94.192300 513 7483 10 chr5A.!!$R1 6970
2 TraesCS5B01G114700 chr5D 171305464 171312106 6642 False 1079.555556 3799 93.214889 142 7391 9 chr5D.!!$F2 7249

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 263 0.391130 CGGTCGGCTCATCCAGAAAA 60.391 55.0 0.00 0.00 34.01 2.29 F
536 545 1.496060 ACAGGATACGGCAAGGATCA 58.504 50.0 6.06 0.00 42.14 2.92 F
1957 3024 0.251165 GCCAGTGTTTAGGCCTTGGA 60.251 55.0 20.94 1.11 45.18 3.53 F
2024 3270 0.392706 GTTGGGGTTTTGCTCTTGGG 59.607 55.0 0.00 0.00 0.00 4.12 F
2561 3810 0.398318 AAAGCGAGCTGGGTTCTTCT 59.602 50.0 13.73 0.00 0.00 2.85 F
4200 5459 0.094730 GAAAGGATTGCGGTTCGTCG 59.905 55.0 0.00 0.00 0.00 5.12 F
4806 6067 0.039346 TTGTTCCGCATGCATGTGTG 60.039 50.0 32.21 24.45 36.60 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 2682 0.029035 ACACCTCGATCGCGACATAC 59.971 55.000 12.93 2.37 42.51 2.39 R
2024 3270 1.442769 CCATATACACCTCATGCGCC 58.557 55.000 4.18 0.00 0.00 6.53 R
3090 4341 1.333435 GCTTGCATGCAAACAAACAGC 60.333 47.619 31.37 24.97 35.33 4.40 R
3191 4442 1.382522 ATCCATAAGTTGCACCAGCG 58.617 50.000 0.00 0.00 46.23 5.18 R
4348 5608 0.869730 AATTACCCGTGTGTTGCGAC 59.130 50.000 0.00 0.00 0.00 5.19 R
5338 6599 2.176364 CTGGAATTGACATCCCCCTCAT 59.824 50.000 0.00 0.00 36.04 2.90 R
6628 7943 0.037232 ACAAGGGCAGCGAAGTACTC 60.037 55.000 0.00 0.00 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.833231 TGATTATCAGCTGCTAATTAACTACC 57.167 34.615 20.62 9.24 0.00 3.18
32 33 8.428852 TGATTATCAGCTGCTAATTAACTACCA 58.571 33.333 20.62 11.29 0.00 3.25
33 34 8.608844 ATTATCAGCTGCTAATTAACTACCAC 57.391 34.615 15.43 0.00 0.00 4.16
34 35 4.430007 TCAGCTGCTAATTAACTACCACG 58.570 43.478 9.47 0.00 0.00 4.94
35 36 3.001330 CAGCTGCTAATTAACTACCACGC 59.999 47.826 0.00 0.00 0.00 5.34
36 37 2.933906 GCTGCTAATTAACTACCACGCA 59.066 45.455 0.00 0.00 0.00 5.24
37 38 3.242316 GCTGCTAATTAACTACCACGCAC 60.242 47.826 0.00 0.00 0.00 5.34
38 39 3.927854 TGCTAATTAACTACCACGCACA 58.072 40.909 0.00 0.00 0.00 4.57
39 40 4.316645 TGCTAATTAACTACCACGCACAA 58.683 39.130 0.00 0.00 0.00 3.33
40 41 4.755629 TGCTAATTAACTACCACGCACAAA 59.244 37.500 0.00 0.00 0.00 2.83
41 42 5.238868 TGCTAATTAACTACCACGCACAAAA 59.761 36.000 0.00 0.00 0.00 2.44
42 43 6.144175 GCTAATTAACTACCACGCACAAAAA 58.856 36.000 0.00 0.00 0.00 1.94
43 44 6.804783 GCTAATTAACTACCACGCACAAAAAT 59.195 34.615 0.00 0.00 0.00 1.82
44 45 7.964011 GCTAATTAACTACCACGCACAAAAATA 59.036 33.333 0.00 0.00 0.00 1.40
45 46 9.828852 CTAATTAACTACCACGCACAAAAATAA 57.171 29.630 0.00 0.00 0.00 1.40
47 48 9.530633 AATTAACTACCACGCACAAAAATAAAA 57.469 25.926 0.00 0.00 0.00 1.52
48 49 8.922058 TTAACTACCACGCACAAAAATAAAAA 57.078 26.923 0.00 0.00 0.00 1.94
70 71 7.946655 AAAATAAGATGAAGATGCATGCATG 57.053 32.000 36.73 22.70 36.70 4.06
84 85 3.961182 CATGCATGCAAGCTAGTAAAGG 58.039 45.455 26.68 0.00 34.99 3.11
85 86 2.368439 TGCATGCAAGCTAGTAAAGGG 58.632 47.619 20.30 0.00 34.99 3.95
86 87 2.026356 TGCATGCAAGCTAGTAAAGGGA 60.026 45.455 20.30 0.00 34.99 4.20
87 88 2.615912 GCATGCAAGCTAGTAAAGGGAG 59.384 50.000 14.21 0.00 0.00 4.30
88 89 3.209410 CATGCAAGCTAGTAAAGGGAGG 58.791 50.000 0.00 0.00 0.00 4.30
89 90 2.546899 TGCAAGCTAGTAAAGGGAGGA 58.453 47.619 0.00 0.00 0.00 3.71
90 91 2.910319 TGCAAGCTAGTAAAGGGAGGAA 59.090 45.455 0.00 0.00 0.00 3.36
91 92 3.523564 TGCAAGCTAGTAAAGGGAGGAAT 59.476 43.478 0.00 0.00 0.00 3.01
92 93 4.130857 GCAAGCTAGTAAAGGGAGGAATC 58.869 47.826 0.00 0.00 0.00 2.52
93 94 4.372656 CAAGCTAGTAAAGGGAGGAATCG 58.627 47.826 0.00 0.00 0.00 3.34
94 95 3.644335 AGCTAGTAAAGGGAGGAATCGT 58.356 45.455 0.00 0.00 0.00 3.73
95 96 3.385111 AGCTAGTAAAGGGAGGAATCGTG 59.615 47.826 0.00 0.00 0.00 4.35
96 97 3.132467 GCTAGTAAAGGGAGGAATCGTGT 59.868 47.826 0.00 0.00 0.00 4.49
97 98 4.382793 GCTAGTAAAGGGAGGAATCGTGTT 60.383 45.833 0.00 0.00 0.00 3.32
98 99 3.939066 AGTAAAGGGAGGAATCGTGTTG 58.061 45.455 0.00 0.00 0.00 3.33
99 100 3.581332 AGTAAAGGGAGGAATCGTGTTGA 59.419 43.478 0.00 0.00 0.00 3.18
100 101 3.502123 AAAGGGAGGAATCGTGTTGAA 57.498 42.857 0.00 0.00 0.00 2.69
101 102 2.474410 AGGGAGGAATCGTGTTGAAC 57.526 50.000 0.00 0.00 0.00 3.18
102 103 1.978580 AGGGAGGAATCGTGTTGAACT 59.021 47.619 0.00 0.00 0.00 3.01
103 104 3.170717 AGGGAGGAATCGTGTTGAACTA 58.829 45.455 0.00 0.00 0.00 2.24
104 105 3.775316 AGGGAGGAATCGTGTTGAACTAT 59.225 43.478 0.00 0.00 0.00 2.12
105 106 4.225267 AGGGAGGAATCGTGTTGAACTATT 59.775 41.667 0.00 0.00 0.00 1.73
106 107 4.332819 GGGAGGAATCGTGTTGAACTATTG 59.667 45.833 0.00 0.00 0.00 1.90
107 108 4.201822 GGAGGAATCGTGTTGAACTATTGC 60.202 45.833 0.00 0.11 33.92 3.56
108 109 4.579869 AGGAATCGTGTTGAACTATTGCT 58.420 39.130 0.00 2.37 37.66 3.91
109 110 5.003804 AGGAATCGTGTTGAACTATTGCTT 58.996 37.500 0.00 0.00 38.84 3.91
110 111 6.170506 AGGAATCGTGTTGAACTATTGCTTA 58.829 36.000 0.00 0.00 38.84 3.09
111 112 6.653320 AGGAATCGTGTTGAACTATTGCTTAA 59.347 34.615 0.00 0.00 38.84 1.85
112 113 7.174253 AGGAATCGTGTTGAACTATTGCTTAAA 59.826 33.333 0.00 0.00 38.84 1.52
113 114 7.481798 GGAATCGTGTTGAACTATTGCTTAAAG 59.518 37.037 0.00 0.00 31.87 1.85
114 115 6.854496 TCGTGTTGAACTATTGCTTAAAGT 57.146 33.333 0.00 0.00 0.00 2.66
115 116 6.884187 TCGTGTTGAACTATTGCTTAAAGTC 58.116 36.000 0.00 0.00 0.00 3.01
116 117 6.073440 TCGTGTTGAACTATTGCTTAAAGTCC 60.073 38.462 0.00 0.00 0.00 3.85
117 118 6.077838 GTGTTGAACTATTGCTTAAAGTCCG 58.922 40.000 0.00 0.00 0.00 4.79
118 119 5.992829 TGTTGAACTATTGCTTAAAGTCCGA 59.007 36.000 0.00 0.00 0.00 4.55
119 120 6.073440 TGTTGAACTATTGCTTAAAGTCCGAC 60.073 38.462 0.00 0.00 0.00 4.79
120 121 5.790593 TGAACTATTGCTTAAAGTCCGACT 58.209 37.500 0.00 0.00 0.00 4.18
121 122 5.637810 TGAACTATTGCTTAAAGTCCGACTG 59.362 40.000 0.65 0.00 0.00 3.51
122 123 5.401531 ACTATTGCTTAAAGTCCGACTGA 57.598 39.130 0.65 0.00 0.00 3.41
123 124 5.978814 ACTATTGCTTAAAGTCCGACTGAT 58.021 37.500 0.65 0.00 0.00 2.90
124 125 7.108841 ACTATTGCTTAAAGTCCGACTGATA 57.891 36.000 0.65 0.00 0.00 2.15
125 126 7.203910 ACTATTGCTTAAAGTCCGACTGATAG 58.796 38.462 0.65 1.21 0.00 2.08
126 127 4.386867 TGCTTAAAGTCCGACTGATAGG 57.613 45.455 0.65 1.15 0.00 2.57
127 128 4.021229 TGCTTAAAGTCCGACTGATAGGA 58.979 43.478 0.65 0.00 0.00 2.94
133 134 3.605743 GTCCGACTGATAGGACGTTAG 57.394 52.381 0.00 0.00 46.08 2.34
134 135 2.941720 GTCCGACTGATAGGACGTTAGT 59.058 50.000 0.00 0.00 46.08 2.24
135 136 3.002144 GTCCGACTGATAGGACGTTAGTC 59.998 52.174 0.00 0.00 46.08 2.59
201 208 4.891992 ATAGTTAATATGCTCCAGCGGT 57.108 40.909 0.00 0.00 45.83 5.68
223 230 2.746277 GCGGACCAAATGCGACCT 60.746 61.111 0.00 0.00 46.80 3.85
225 232 1.501741 CGGACCAAATGCGACCTTG 59.498 57.895 0.00 0.00 46.80 3.61
226 233 1.212751 GGACCAAATGCGACCTTGC 59.787 57.895 0.00 0.00 0.00 4.01
248 255 3.695606 AGCACACGGTCGGCTCAT 61.696 61.111 0.00 0.00 30.74 2.90
249 256 3.188786 GCACACGGTCGGCTCATC 61.189 66.667 0.00 0.00 0.00 2.92
250 257 2.509336 CACACGGTCGGCTCATCC 60.509 66.667 0.00 0.00 0.00 3.51
251 258 2.994995 ACACGGTCGGCTCATCCA 60.995 61.111 0.00 0.00 34.01 3.41
252 259 2.202797 CACGGTCGGCTCATCCAG 60.203 66.667 0.00 0.00 34.01 3.86
253 260 2.362503 ACGGTCGGCTCATCCAGA 60.363 61.111 0.00 0.00 34.01 3.86
254 261 1.982395 ACGGTCGGCTCATCCAGAA 60.982 57.895 0.00 0.00 34.01 3.02
255 262 1.218047 CGGTCGGCTCATCCAGAAA 59.782 57.895 0.00 0.00 34.01 2.52
256 263 0.391130 CGGTCGGCTCATCCAGAAAA 60.391 55.000 0.00 0.00 34.01 2.29
257 264 1.821216 GGTCGGCTCATCCAGAAAAA 58.179 50.000 0.00 0.00 34.01 1.94
282 289 4.740822 GTGCCGCCCCATTGTCCT 62.741 66.667 0.00 0.00 0.00 3.85
284 291 2.382770 TGCCGCCCCATTGTCCTAT 61.383 57.895 0.00 0.00 0.00 2.57
290 297 2.752829 CGCCCCATTGTCCTATCCAAAT 60.753 50.000 0.00 0.00 0.00 2.32
313 320 1.871039 ACAAATCTGACGTCCGTTTGG 59.129 47.619 26.69 17.42 34.87 3.28
325 332 3.478857 TCCGTTTGGAGTCTTGCTTTA 57.521 42.857 0.00 0.00 40.17 1.85
326 333 3.399330 TCCGTTTGGAGTCTTGCTTTAG 58.601 45.455 0.00 0.00 40.17 1.85
327 334 3.070446 TCCGTTTGGAGTCTTGCTTTAGA 59.930 43.478 0.00 0.00 40.17 2.10
328 335 3.433615 CCGTTTGGAGTCTTGCTTTAGAG 59.566 47.826 0.00 0.00 37.49 2.43
329 336 4.058817 CGTTTGGAGTCTTGCTTTAGAGT 58.941 43.478 0.00 0.00 0.00 3.24
330 337 4.511826 CGTTTGGAGTCTTGCTTTAGAGTT 59.488 41.667 0.00 0.00 0.00 3.01
331 338 5.559035 CGTTTGGAGTCTTGCTTTAGAGTTG 60.559 44.000 0.00 0.00 0.00 3.16
332 339 4.955811 TGGAGTCTTGCTTTAGAGTTGA 57.044 40.909 0.00 0.00 0.00 3.18
333 340 4.887748 TGGAGTCTTGCTTTAGAGTTGAG 58.112 43.478 0.00 0.00 0.00 3.02
334 341 3.682377 GGAGTCTTGCTTTAGAGTTGAGC 59.318 47.826 0.00 0.00 36.95 4.26
335 342 4.562552 GGAGTCTTGCTTTAGAGTTGAGCT 60.563 45.833 0.00 0.00 37.32 4.09
336 343 4.967036 AGTCTTGCTTTAGAGTTGAGCTT 58.033 39.130 0.00 0.00 37.32 3.74
337 344 6.102897 AGTCTTGCTTTAGAGTTGAGCTTA 57.897 37.500 0.00 0.00 37.32 3.09
360 367 3.060895 GCTCTAACACACGTGAATAGTGC 59.939 47.826 25.01 24.08 42.94 4.40
362 369 1.860676 AACACACGTGAATAGTGCGT 58.139 45.000 25.01 2.92 42.94 5.24
393 400 5.450818 TCTTCTGCAACCCCTTGTATATT 57.549 39.130 0.00 0.00 0.00 1.28
396 403 4.269183 TCTGCAACCCCTTGTATATTGTG 58.731 43.478 0.00 0.00 0.00 3.33
444 451 8.635124 CGAAGATTTACAAAAACGCATAAACAT 58.365 29.630 0.00 0.00 0.00 2.71
445 452 9.726034 GAAGATTTACAAAAACGCATAAACATG 57.274 29.630 0.00 0.00 0.00 3.21
449 456 9.856803 ATTTACAAAAACGCATAAACATGAAAC 57.143 25.926 0.00 0.00 0.00 2.78
450 457 6.280537 ACAAAAACGCATAAACATGAAACC 57.719 33.333 0.00 0.00 0.00 3.27
451 458 5.812642 ACAAAAACGCATAAACATGAAACCA 59.187 32.000 0.00 0.00 0.00 3.67
453 460 4.576216 AACGCATAAACATGAAACCACA 57.424 36.364 0.00 0.00 0.00 4.17
463 470 6.783892 AACATGAAACCACATTATGCAAAC 57.216 33.333 0.00 0.00 0.00 2.93
466 473 4.626042 TGAAACCACATTATGCAAACACC 58.374 39.130 0.00 0.00 0.00 4.16
467 474 4.100035 TGAAACCACATTATGCAAACACCA 59.900 37.500 0.00 0.00 0.00 4.17
473 480 4.736307 CACATTATGCAAACACCATCATCG 59.264 41.667 0.00 0.00 0.00 3.84
511 520 8.585471 TTGAAGCTTCATTCTCCATAATTTCT 57.415 30.769 28.89 0.00 37.00 2.52
515 524 7.701445 AGCTTCATTCTCCATAATTTCTTTCG 58.299 34.615 0.00 0.00 0.00 3.46
518 527 9.495754 CTTCATTCTCCATAATTTCTTTCGAAC 57.504 33.333 0.00 0.00 0.00 3.95
524 533 8.482943 TCTCCATAATTTCTTTCGAACAGGATA 58.517 33.333 0.00 0.00 0.00 2.59
528 537 2.288961 TCTTTCGAACAGGATACGGC 57.711 50.000 0.00 0.00 46.39 5.68
536 545 1.496060 ACAGGATACGGCAAGGATCA 58.504 50.000 6.06 0.00 42.14 2.92
551 560 4.327982 AGGATCAACTATGACGTGATGG 57.672 45.455 0.00 0.00 38.69 3.51
566 575 3.754323 CGTGATGGGTTTAAACTTGCCTA 59.246 43.478 17.50 0.00 0.00 3.93
582 591 7.439108 ACTTGCCTATAAATAACAGTCCTCT 57.561 36.000 0.00 0.00 0.00 3.69
609 618 4.019867 GTCGAACACTGAAAACACTTTCG 58.980 43.478 0.00 0.00 43.40 3.46
610 619 3.927758 TCGAACACTGAAAACACTTTCGA 59.072 39.130 0.00 0.00 43.40 3.71
639 648 3.379452 ACACCATTCTTTTCCCCACAAA 58.621 40.909 0.00 0.00 0.00 2.83
686 704 5.700832 TGCCAAGCTATATAAACCTTGATCG 59.299 40.000 14.40 4.66 37.46 3.69
711 729 2.106683 CCTCCGGGTTGTGATTCGC 61.107 63.158 0.00 0.00 0.00 4.70
791 833 7.635089 GCTTTTCTTTTCTTAAGGAAGGGGTTT 60.635 37.037 5.83 0.00 35.16 3.27
818 861 4.398549 TCGATGCGGAAAGTTTTTGTAG 57.601 40.909 0.00 0.00 0.00 2.74
863 907 2.856231 TGCCCAATATAAACAGGGAGGT 59.144 45.455 0.00 0.00 44.30 3.85
913 957 4.108299 CCATACCGGCAGCCACCA 62.108 66.667 13.30 0.00 0.00 4.17
977 1021 3.471806 GCCCCCGACTTCTCCTCC 61.472 72.222 0.00 0.00 0.00 4.30
1071 1115 3.670629 CTCCGCCTCCCTCCACTCT 62.671 68.421 0.00 0.00 0.00 3.24
1093 1137 3.775654 CCGCCTTCTCCGCCTTCT 61.776 66.667 0.00 0.00 0.00 2.85
1726 2659 7.496591 ACGAGTGTTTTTGTTATTTCCTACTCA 59.503 33.333 0.00 0.00 32.56 3.41
1803 2736 0.624254 GGGAGGGTTTTACCAGGGAG 59.376 60.000 0.00 0.00 41.02 4.30
1956 3023 2.267045 GCCAGTGTTTAGGCCTTGG 58.733 57.895 12.58 13.29 45.18 3.61
1957 3024 0.251165 GCCAGTGTTTAGGCCTTGGA 60.251 55.000 20.94 1.11 45.18 3.53
1958 3025 1.826385 CCAGTGTTTAGGCCTTGGAG 58.174 55.000 12.58 0.00 0.00 3.86
1959 3026 1.614317 CCAGTGTTTAGGCCTTGGAGG 60.614 57.143 12.58 0.11 38.80 4.30
1960 3027 1.073923 CAGTGTTTAGGCCTTGGAGGT 59.926 52.381 12.58 0.00 37.80 3.85
1961 3028 1.073923 AGTGTTTAGGCCTTGGAGGTG 59.926 52.381 12.58 0.00 37.80 4.00
1962 3029 1.073284 GTGTTTAGGCCTTGGAGGTGA 59.927 52.381 12.58 0.00 37.80 4.02
1963 3030 1.777878 TGTTTAGGCCTTGGAGGTGAA 59.222 47.619 12.58 0.00 37.80 3.18
1964 3031 2.378547 TGTTTAGGCCTTGGAGGTGAAT 59.621 45.455 12.58 0.00 37.80 2.57
1965 3032 3.181423 TGTTTAGGCCTTGGAGGTGAATT 60.181 43.478 12.58 0.00 37.80 2.17
1966 3033 3.366052 TTAGGCCTTGGAGGTGAATTC 57.634 47.619 12.58 0.00 37.80 2.17
1967 3034 1.075601 AGGCCTTGGAGGTGAATTCA 58.924 50.000 0.00 3.38 37.80 2.57
1968 3035 1.428912 AGGCCTTGGAGGTGAATTCAA 59.571 47.619 10.35 0.00 37.80 2.69
1969 3036 2.043526 AGGCCTTGGAGGTGAATTCAAT 59.956 45.455 10.35 1.48 37.80 2.57
1970 3037 2.833943 GGCCTTGGAGGTGAATTCAATT 59.166 45.455 10.35 0.76 37.80 2.32
1971 3038 3.368739 GGCCTTGGAGGTGAATTCAATTG 60.369 47.826 10.35 0.00 37.80 2.32
1972 3039 3.259123 GCCTTGGAGGTGAATTCAATTGT 59.741 43.478 10.35 0.00 37.80 2.71
1973 3040 4.262592 GCCTTGGAGGTGAATTCAATTGTT 60.263 41.667 10.35 0.00 37.80 2.83
1974 3041 5.047377 GCCTTGGAGGTGAATTCAATTGTTA 60.047 40.000 10.35 0.00 37.80 2.41
1975 3042 6.389906 CCTTGGAGGTGAATTCAATTGTTAC 58.610 40.000 10.35 0.00 0.00 2.50
1976 3043 6.015519 CCTTGGAGGTGAATTCAATTGTTACA 60.016 38.462 10.35 0.87 0.00 2.41
1977 3044 6.325919 TGGAGGTGAATTCAATTGTTACAC 57.674 37.500 10.35 11.14 0.00 2.90
1978 3045 6.068010 TGGAGGTGAATTCAATTGTTACACT 58.932 36.000 10.35 0.00 0.00 3.55
1979 3046 7.227873 TGGAGGTGAATTCAATTGTTACACTA 58.772 34.615 10.35 0.00 0.00 2.74
1980 3047 7.888021 TGGAGGTGAATTCAATTGTTACACTAT 59.112 33.333 10.35 5.83 0.00 2.12
1981 3048 8.184192 GGAGGTGAATTCAATTGTTACACTATG 58.816 37.037 10.35 0.00 0.00 2.23
1982 3049 8.862325 AGGTGAATTCAATTGTTACACTATGA 57.138 30.769 10.35 0.00 0.00 2.15
1983 3050 9.295825 AGGTGAATTCAATTGTTACACTATGAA 57.704 29.630 10.35 8.42 0.00 2.57
1984 3051 9.906660 GGTGAATTCAATTGTTACACTATGAAA 57.093 29.630 10.35 0.00 0.00 2.69
2024 3270 0.392706 GTTGGGGTTTTGCTCTTGGG 59.607 55.000 0.00 0.00 0.00 4.12
2233 3479 4.081420 GGTGTCTGATGATACTGGACTGTT 60.081 45.833 0.00 0.00 35.13 3.16
2355 3601 7.975058 TCGTTACAGTCGAATTATCCATAACAA 59.025 33.333 0.00 0.00 34.36 2.83
2411 3657 1.452108 GGATGAGGGGCGGACAAAG 60.452 63.158 0.00 0.00 0.00 2.77
2412 3658 1.452108 GATGAGGGGCGGACAAAGG 60.452 63.158 0.00 0.00 0.00 3.11
2434 3683 3.009143 GGGGGATACATGATGAAGTACCC 59.991 52.174 0.00 3.88 39.74 3.69
2536 3785 6.208204 ACAGAATGAAGAAAAGTAGCAAGCAT 59.792 34.615 0.00 0.00 39.69 3.79
2561 3810 0.398318 AAAGCGAGCTGGGTTCTTCT 59.602 50.000 13.73 0.00 0.00 2.85
2666 3915 2.092375 GGGTGAATAGGGGAAGAAGTGG 60.092 54.545 0.00 0.00 0.00 4.00
2689 3938 4.156556 GCTGTCATTGAGCTGGAATTTACA 59.843 41.667 0.00 0.00 33.37 2.41
2733 3982 7.638444 TGGATTGAACCAACTGAATAATAGGA 58.362 34.615 0.00 0.00 36.96 2.94
2788 4037 4.792648 GCTCGCAGACTCGCAGCT 62.793 66.667 0.00 0.00 33.29 4.24
2816 4065 5.126067 AGTCATGGTTGCTGAATATGGTAC 58.874 41.667 0.00 0.00 0.00 3.34
2843 4092 7.439056 GGAATTGGATATAAAGTTGTGGCATTG 59.561 37.037 0.00 0.00 0.00 2.82
2857 4106 5.804639 TGTGGCATTGACTCTACATAACTT 58.195 37.500 0.00 0.00 0.00 2.66
2997 4246 7.037438 ACAAATGAATGTGGAATGAATGCTAC 58.963 34.615 0.00 0.00 30.82 3.58
3089 4340 6.747414 TGTGCATCACCTATTACTAAGGAT 57.253 37.500 0.00 0.00 37.57 3.24
3090 4341 6.524734 TGTGCATCACCTATTACTAAGGATG 58.475 40.000 0.00 0.00 37.57 3.51
3191 4442 3.969117 TTCACTGTTGCTCATTGTGAC 57.031 42.857 0.00 0.00 37.38 3.67
3211 4462 1.745087 CGCTGGTGCAACTTATGGATT 59.255 47.619 2.04 0.00 39.64 3.01
3344 4595 7.326454 TGTATGCATTTGGCTTTAAGCATTTA 58.674 30.769 19.10 1.28 44.75 1.40
3455 4706 5.421374 TCTGCTTCAAGATGATTCAGAGAGA 59.579 40.000 0.00 0.00 33.37 3.10
3482 4733 1.622312 GTCGACCTGGTTACTCCCTTT 59.378 52.381 3.51 0.00 34.77 3.11
3672 4931 2.809299 GCGTTCACCTTAACCAACCTCT 60.809 50.000 0.00 0.00 0.00 3.69
3693 4952 0.964358 ATGTTGCCTTGCCTCTCAGC 60.964 55.000 0.00 0.00 0.00 4.26
3731 4990 6.741992 AATTCGATCTGTGCAAATTCAGTA 57.258 33.333 0.00 0.00 33.89 2.74
3787 5046 6.147328 ACTTGTTGATTTCGCTTCCTAGTTAC 59.853 38.462 0.00 0.00 0.00 2.50
3886 5145 8.798975 TTTATATAGGGCCTGGAGGATAATAG 57.201 38.462 18.53 0.00 37.39 1.73
4200 5459 0.094730 GAAAGGATTGCGGTTCGTCG 59.905 55.000 0.00 0.00 0.00 5.12
4328 5588 6.204688 TCAGACATGGTGTTGAATCACTTAAC 59.795 38.462 0.00 0.00 38.28 2.01
4337 5597 7.750458 GGTGTTGAATCACTTAACATGTATGTG 59.250 37.037 15.37 15.37 38.43 3.21
4338 5598 7.271223 GTGTTGAATCACTTAACATGTATGTGC 59.729 37.037 16.23 7.47 36.78 4.57
4339 5599 6.105657 TGAATCACTTAACATGTATGTGCG 57.894 37.500 16.23 0.00 41.61 5.34
4340 5600 5.641636 TGAATCACTTAACATGTATGTGCGT 59.358 36.000 16.23 9.36 41.61 5.24
4341 5601 6.814146 TGAATCACTTAACATGTATGTGCGTA 59.186 34.615 16.23 5.17 41.61 4.42
4342 5602 7.494298 TGAATCACTTAACATGTATGTGCGTAT 59.506 33.333 16.23 6.72 41.61 3.06
4343 5603 6.582437 TCACTTAACATGTATGTGCGTATG 57.418 37.500 16.23 3.09 41.61 2.39
4344 5604 5.522097 TCACTTAACATGTATGTGCGTATGG 59.478 40.000 16.23 0.00 41.61 2.74
4345 5605 4.272504 ACTTAACATGTATGTGCGTATGGC 59.727 41.667 0.00 0.00 41.61 4.40
4346 5606 2.620251 ACATGTATGTGCGTATGGCT 57.380 45.000 0.00 0.00 44.05 4.75
4347 5607 2.483876 ACATGTATGTGCGTATGGCTC 58.516 47.619 0.00 0.00 44.05 4.70
4348 5608 1.456923 CATGTATGTGCGTATGGCTCG 59.543 52.381 0.00 0.00 44.05 5.03
4349 5609 0.458260 TGTATGTGCGTATGGCTCGT 59.542 50.000 0.00 0.00 44.05 4.18
4350 5610 1.129326 GTATGTGCGTATGGCTCGTC 58.871 55.000 0.00 0.00 44.05 4.20
4351 5611 0.317519 TATGTGCGTATGGCTCGTCG 60.318 55.000 0.00 0.00 44.05 5.12
4354 5614 2.883730 GCGTATGGCTCGTCGCAA 60.884 61.111 10.62 0.00 46.40 4.85
4355 5615 2.995482 CGTATGGCTCGTCGCAAC 59.005 61.111 2.27 0.00 41.67 4.17
4356 5616 1.803922 CGTATGGCTCGTCGCAACA 60.804 57.895 2.27 0.00 41.67 3.33
4357 5617 1.708027 GTATGGCTCGTCGCAACAC 59.292 57.895 2.27 0.00 41.67 3.32
4358 5618 1.011968 GTATGGCTCGTCGCAACACA 61.012 55.000 2.27 0.00 41.67 3.72
4359 5619 1.011968 TATGGCTCGTCGCAACACAC 61.012 55.000 2.27 0.00 41.67 3.82
4360 5620 4.059459 GGCTCGTCGCAACACACG 62.059 66.667 2.27 0.00 41.67 4.49
4361 5621 4.059459 GCTCGTCGCAACACACGG 62.059 66.667 0.00 0.00 38.92 4.94
4362 5622 3.403057 CTCGTCGCAACACACGGG 61.403 66.667 0.00 0.00 36.64 5.28
4363 5623 4.210093 TCGTCGCAACACACGGGT 62.210 61.111 0.00 0.00 36.64 5.28
4364 5624 2.354891 CGTCGCAACACACGGGTA 60.355 61.111 0.00 0.00 32.19 3.69
4365 5625 1.950130 CGTCGCAACACACGGGTAA 60.950 57.895 0.00 0.00 32.19 2.85
4366 5626 1.286354 CGTCGCAACACACGGGTAAT 61.286 55.000 0.00 0.00 32.19 1.89
4367 5627 0.869730 GTCGCAACACACGGGTAATT 59.130 50.000 0.00 0.00 0.00 1.40
4368 5628 2.067766 GTCGCAACACACGGGTAATTA 58.932 47.619 0.00 0.00 0.00 1.40
4369 5629 2.093152 GTCGCAACACACGGGTAATTAG 59.907 50.000 0.00 0.00 0.00 1.73
4370 5630 1.201987 CGCAACACACGGGTAATTAGC 60.202 52.381 6.10 6.10 0.00 3.09
4371 5631 2.081462 GCAACACACGGGTAATTAGCT 58.919 47.619 13.99 0.00 0.00 3.32
4372 5632 3.264104 GCAACACACGGGTAATTAGCTA 58.736 45.455 13.99 0.00 0.00 3.32
4373 5633 3.308866 GCAACACACGGGTAATTAGCTAG 59.691 47.826 13.99 10.85 0.00 3.42
4374 5634 4.501071 CAACACACGGGTAATTAGCTAGT 58.499 43.478 13.99 11.41 0.00 2.57
4375 5635 4.382345 ACACACGGGTAATTAGCTAGTC 57.618 45.455 13.99 0.00 0.00 2.59
4376 5636 4.021916 ACACACGGGTAATTAGCTAGTCT 58.978 43.478 13.99 1.23 0.00 3.24
4377 5637 4.465305 ACACACGGGTAATTAGCTAGTCTT 59.535 41.667 13.99 2.79 0.00 3.01
4378 5638 5.046807 ACACACGGGTAATTAGCTAGTCTTT 60.047 40.000 13.99 0.78 0.00 2.52
4379 5639 5.519206 CACACGGGTAATTAGCTAGTCTTTC 59.481 44.000 13.99 0.00 0.00 2.62
4380 5640 5.186409 ACACGGGTAATTAGCTAGTCTTTCA 59.814 40.000 13.99 0.00 0.00 2.69
4381 5641 5.519206 CACGGGTAATTAGCTAGTCTTTCAC 59.481 44.000 13.99 0.00 0.00 3.18
4382 5642 5.421374 ACGGGTAATTAGCTAGTCTTTCACT 59.579 40.000 13.99 0.00 39.41 3.41
4383 5643 6.604795 ACGGGTAATTAGCTAGTCTTTCACTA 59.395 38.462 13.99 0.00 36.43 2.74
4384 5644 7.123247 ACGGGTAATTAGCTAGTCTTTCACTAA 59.877 37.037 13.99 0.00 37.13 2.24
4385 5645 8.142551 CGGGTAATTAGCTAGTCTTTCACTAAT 58.857 37.037 13.99 0.00 37.13 1.73
4395 5655 9.278734 GCTAGTCTTTCACTAATAAACAAATGC 57.721 33.333 0.00 0.00 37.13 3.56
4398 5658 9.846248 AGTCTTTCACTAATAAACAAATGCATC 57.154 29.630 0.00 0.00 31.37 3.91
4399 5659 9.624697 GTCTTTCACTAATAAACAAATGCATCA 57.375 29.630 0.00 0.00 0.00 3.07
4400 5660 9.624697 TCTTTCACTAATAAACAAATGCATCAC 57.375 29.630 0.00 0.00 0.00 3.06
4401 5661 9.630098 CTTTCACTAATAAACAAATGCATCACT 57.370 29.630 0.00 0.00 0.00 3.41
4402 5662 8.969121 TTCACTAATAAACAAATGCATCACTG 57.031 30.769 0.00 0.37 0.00 3.66
4403 5663 8.109705 TCACTAATAAACAAATGCATCACTGT 57.890 30.769 0.00 1.07 0.00 3.55
4404 5664 8.236586 TCACTAATAAACAAATGCATCACTGTC 58.763 33.333 0.00 0.00 0.00 3.51
4405 5665 8.239314 CACTAATAAACAAATGCATCACTGTCT 58.761 33.333 0.00 0.00 0.00 3.41
4406 5666 9.448438 ACTAATAAACAAATGCATCACTGTCTA 57.552 29.630 0.00 0.00 0.00 2.59
4407 5667 9.708222 CTAATAAACAAATGCATCACTGTCTAC 57.292 33.333 0.00 0.00 0.00 2.59
4408 5668 7.686438 ATAAACAAATGCATCACTGTCTACA 57.314 32.000 0.00 0.00 0.00 2.74
4409 5669 6.579666 AAACAAATGCATCACTGTCTACAT 57.420 33.333 0.00 0.00 0.00 2.29
4410 5670 5.556355 ACAAATGCATCACTGTCTACATG 57.444 39.130 0.00 0.00 0.00 3.21
4411 5671 4.397103 ACAAATGCATCACTGTCTACATGG 59.603 41.667 0.00 0.00 0.00 3.66
4412 5672 2.696989 TGCATCACTGTCTACATGGG 57.303 50.000 0.00 0.00 0.00 4.00
4413 5673 2.187100 TGCATCACTGTCTACATGGGA 58.813 47.619 0.00 0.00 0.00 4.37
4414 5674 2.093500 TGCATCACTGTCTACATGGGAC 60.093 50.000 12.28 12.28 0.00 4.46
4415 5675 2.169352 GCATCACTGTCTACATGGGACT 59.831 50.000 17.64 1.46 35.04 3.85
4416 5676 3.384789 GCATCACTGTCTACATGGGACTA 59.615 47.826 17.64 7.43 35.04 2.59
4417 5677 4.141937 GCATCACTGTCTACATGGGACTAA 60.142 45.833 17.64 3.10 35.04 2.24
4418 5678 5.352284 CATCACTGTCTACATGGGACTAAC 58.648 45.833 17.64 0.88 35.04 2.34
4419 5679 4.412843 TCACTGTCTACATGGGACTAACA 58.587 43.478 17.64 4.70 35.04 2.41
4420 5680 4.836175 TCACTGTCTACATGGGACTAACAA 59.164 41.667 17.64 2.00 35.04 2.83
4421 5681 5.305902 TCACTGTCTACATGGGACTAACAAA 59.694 40.000 17.64 1.46 35.04 2.83
4422 5682 6.013725 TCACTGTCTACATGGGACTAACAAAT 60.014 38.462 17.64 0.00 35.04 2.32
4423 5683 6.655003 CACTGTCTACATGGGACTAACAAATT 59.345 38.462 17.64 0.00 35.04 1.82
4424 5684 7.174946 CACTGTCTACATGGGACTAACAAATTT 59.825 37.037 17.64 0.00 35.04 1.82
4425 5685 7.390718 ACTGTCTACATGGGACTAACAAATTTC 59.609 37.037 17.64 0.00 35.04 2.17
4426 5686 6.657541 TGTCTACATGGGACTAACAAATTTCC 59.342 38.462 17.64 0.00 35.04 3.13
4432 5692 4.918588 GGGACTAACAAATTTCCCAGAGA 58.081 43.478 5.86 0.00 46.35 3.10
4433 5693 5.510430 GGGACTAACAAATTTCCCAGAGAT 58.490 41.667 5.86 0.00 46.35 2.75
4434 5694 5.358160 GGGACTAACAAATTTCCCAGAGATG 59.642 44.000 5.86 0.00 46.35 2.90
4435 5695 5.946377 GGACTAACAAATTTCCCAGAGATGT 59.054 40.000 0.00 0.00 0.00 3.06
4436 5696 7.110155 GGACTAACAAATTTCCCAGAGATGTA 58.890 38.462 0.00 0.00 0.00 2.29
4437 5697 7.610305 GGACTAACAAATTTCCCAGAGATGTAA 59.390 37.037 0.00 0.00 0.00 2.41
4438 5698 8.934023 ACTAACAAATTTCCCAGAGATGTAAA 57.066 30.769 0.00 0.00 0.00 2.01
4439 5699 9.533831 ACTAACAAATTTCCCAGAGATGTAAAT 57.466 29.630 0.00 0.00 0.00 1.40
4444 5704 9.586435 CAAATTTCCCAGAGATGTAAATAAACC 57.414 33.333 0.00 0.00 0.00 3.27
4445 5705 8.893563 AATTTCCCAGAGATGTAAATAAACCA 57.106 30.769 0.00 0.00 0.00 3.67
4446 5706 7.696992 TTTCCCAGAGATGTAAATAAACCAC 57.303 36.000 0.00 0.00 0.00 4.16
4447 5707 6.636454 TCCCAGAGATGTAAATAAACCACT 57.364 37.500 0.00 0.00 0.00 4.00
4448 5708 7.027874 TCCCAGAGATGTAAATAAACCACTT 57.972 36.000 0.00 0.00 0.00 3.16
4449 5709 7.466804 TCCCAGAGATGTAAATAAACCACTTT 58.533 34.615 0.00 0.00 0.00 2.66
4450 5710 8.607713 TCCCAGAGATGTAAATAAACCACTTTA 58.392 33.333 0.00 0.00 0.00 1.85
4451 5711 8.674607 CCCAGAGATGTAAATAAACCACTTTAC 58.325 37.037 0.00 0.00 38.00 2.01
4452 5712 9.226606 CCAGAGATGTAAATAAACCACTTTACA 57.773 33.333 9.51 9.51 46.23 2.41
4454 5714 9.787435 AGAGATGTAAATAAACCACTTTACACA 57.213 29.630 9.34 0.00 45.48 3.72
4462 5722 9.921637 AAATAAACCACTTTACACATATGTTGG 57.078 29.630 16.91 16.91 40.48 3.77
4463 5723 8.871629 ATAAACCACTTTACACATATGTTGGA 57.128 30.769 22.87 7.39 40.48 3.53
4464 5724 7.589958 AAACCACTTTACACATATGTTGGAA 57.410 32.000 22.87 12.16 40.48 3.53
4465 5725 7.775053 AACCACTTTACACATATGTTGGAAT 57.225 32.000 22.87 11.83 40.48 3.01
4466 5726 8.871629 AACCACTTTACACATATGTTGGAATA 57.128 30.769 22.87 3.56 40.48 1.75
4467 5727 8.871629 ACCACTTTACACATATGTTGGAATAA 57.128 30.769 22.87 8.42 40.48 1.40
4468 5728 8.736244 ACCACTTTACACATATGTTGGAATAAC 58.264 33.333 22.87 0.00 40.48 1.89
4469 5729 8.956426 CCACTTTACACATATGTTGGAATAACT 58.044 33.333 14.36 0.00 40.48 2.24
4539 5800 9.472361 CTTGGAATTATCATTTGCATAGAAAGG 57.528 33.333 0.00 0.00 0.00 3.11
4696 5957 8.685427 TCTATTCAGCTTGCAAATTGCTTATTA 58.315 29.630 19.34 0.00 45.31 0.98
4806 6067 0.039346 TTGTTCCGCATGCATGTGTG 60.039 50.000 32.21 24.45 36.60 3.82
4880 6141 5.410067 AGCGCATTAGCATTTTATGTTTGT 58.590 33.333 11.47 0.00 42.27 2.83
4943 6204 8.535690 ACACAGTTTGTCTAATTAGAGCTTAC 57.464 34.615 15.58 11.00 29.79 2.34
4981 6242 2.356432 CCCTGAATGCTGAGTTGGATGA 60.356 50.000 0.00 0.00 0.00 2.92
4986 6247 4.577693 TGAATGCTGAGTTGGATGATAAGC 59.422 41.667 0.00 0.00 0.00 3.09
5182 6443 5.106317 CCAATAAGTTACGCCATGTTCTGTT 60.106 40.000 0.00 0.00 0.00 3.16
5183 6444 5.796350 ATAAGTTACGCCATGTTCTGTTC 57.204 39.130 0.00 0.00 0.00 3.18
5184 6445 3.402628 AGTTACGCCATGTTCTGTTCT 57.597 42.857 0.00 0.00 0.00 3.01
5203 6464 5.064707 TGTTCTTTGCTTCTGTCTAACACAC 59.935 40.000 0.00 0.00 0.00 3.82
5238 6499 7.006564 CGATTATTTTCTTTCGTCTTCTTGTGC 59.993 37.037 0.00 0.00 0.00 4.57
5322 6583 6.932901 TTTTCTAAAGATGCTGCAAAATCG 57.067 33.333 6.36 0.00 0.00 3.34
5325 6586 3.921119 AAAGATGCTGCAAAATCGTCA 57.079 38.095 6.36 0.00 0.00 4.35
5338 6599 5.334879 GCAAAATCGTCAAAGAGGAAAGCTA 60.335 40.000 0.00 0.00 30.29 3.32
5405 6666 7.386848 CAGAACAACTTTCCGAGGTAAGATTTA 59.613 37.037 14.15 0.00 0.00 1.40
5427 6688 4.729868 ACCTGCAGTATCACTTTTCCTTT 58.270 39.130 13.81 0.00 0.00 3.11
5519 6780 2.029380 TGTACAATCTGTCGTCCAGGTG 60.029 50.000 0.00 6.51 41.83 4.00
5637 6901 5.846203 CCATCAAATGTGGTTTCTCTTTGT 58.154 37.500 0.00 0.00 31.96 2.83
5684 6948 0.175760 GCGTCCTTCTGCATCCAGTA 59.824 55.000 0.00 0.00 40.09 2.74
5711 6975 4.339247 GGACAATGGATTGGTCAGTTATGG 59.661 45.833 4.45 0.00 41.96 2.74
5760 7025 2.440409 AGACTATGCCTTGTTTGCCAG 58.560 47.619 0.00 0.00 0.00 4.85
5793 7059 9.829507 TCATTTTGTTTTGGACTGACAATATTT 57.170 25.926 0.00 0.00 33.73 1.40
5925 7191 3.736740 CGTTGGTAAGTTTGCAGCCTTTT 60.737 43.478 5.41 0.00 0.00 2.27
5926 7192 4.188462 GTTGGTAAGTTTGCAGCCTTTTT 58.812 39.130 5.41 0.00 0.00 1.94
5989 7255 7.517614 AATGTGTCCATGTGTTTATTGTGTA 57.482 32.000 0.00 0.00 0.00 2.90
5990 7256 6.944234 TGTGTCCATGTGTTTATTGTGTAA 57.056 33.333 0.00 0.00 0.00 2.41
5991 7257 7.517614 TGTGTCCATGTGTTTATTGTGTAAT 57.482 32.000 0.00 0.00 0.00 1.89
6019 7285 6.183360 TGGCTTGAAGCACAGATATTATTTGG 60.183 38.462 19.89 0.00 44.75 3.28
6041 7307 5.221823 TGGTTCATTTCAAATTTTCTCCCCC 60.222 40.000 0.00 0.00 0.00 5.40
6060 7326 4.446311 CCCCCAAGATATACCAAGGTTCTG 60.446 50.000 0.00 0.00 0.00 3.02
6063 7329 6.126594 CCCCAAGATATACCAAGGTTCTGTTA 60.127 42.308 0.00 0.00 0.00 2.41
6065 7331 6.483640 CCAAGATATACCAAGGTTCTGTTAGC 59.516 42.308 0.00 0.00 0.00 3.09
6066 7332 6.808321 AGATATACCAAGGTTCTGTTAGCA 57.192 37.500 0.00 0.00 0.00 3.49
6088 7354 5.693814 CACTTCTGTCCATTAGTTTGCTTC 58.306 41.667 0.00 0.00 0.00 3.86
6092 7358 5.060506 TCTGTCCATTAGTTTGCTTCGAAA 58.939 37.500 0.00 0.00 0.00 3.46
6297 7587 2.306847 GTGGTCATCCAACCTTGTGTT 58.693 47.619 0.00 0.00 46.15 3.32
6347 7654 4.141824 CCTTGAGTCTACCCTTTCAGGATC 60.142 50.000 0.00 0.00 37.67 3.36
6481 7795 5.470047 ACTAGCTACTGTACTTTGTTGCT 57.530 39.130 19.23 19.23 44.51 3.91
6546 7861 8.564574 CACTGGTTTGCTAAATTTCTACAGTAA 58.435 33.333 0.00 0.00 34.11 2.24
6547 7862 8.784043 ACTGGTTTGCTAAATTTCTACAGTAAG 58.216 33.333 0.00 0.00 34.11 2.34
6548 7863 8.685838 TGGTTTGCTAAATTTCTACAGTAAGT 57.314 30.769 0.00 0.00 0.00 2.24
6549 7864 9.781633 TGGTTTGCTAAATTTCTACAGTAAGTA 57.218 29.630 0.00 0.00 0.00 2.24
6553 7868 9.649167 TTGCTAAATTTCTACAGTAAGTACTCC 57.351 33.333 0.00 0.00 33.46 3.85
6554 7869 8.255905 TGCTAAATTTCTACAGTAAGTACTCCC 58.744 37.037 0.00 0.00 33.46 4.30
6555 7870 8.476447 GCTAAATTTCTACAGTAAGTACTCCCT 58.524 37.037 0.00 0.00 33.46 4.20
6557 7872 8.667592 AAATTTCTACAGTAAGTACTCCCTCT 57.332 34.615 0.00 0.00 33.46 3.69
6558 7873 7.648039 ATTTCTACAGTAAGTACTCCCTCTG 57.352 40.000 0.00 5.54 33.46 3.35
6559 7874 5.775813 TCTACAGTAAGTACTCCCTCTGT 57.224 43.478 18.73 18.73 39.11 3.41
6560 7875 6.881067 TCTACAGTAAGTACTCCCTCTGTA 57.119 41.667 18.88 18.88 37.35 2.74
6561 7876 7.262990 TCTACAGTAAGTACTCCCTCTGTAA 57.737 40.000 19.69 13.07 37.74 2.41
6562 7877 7.693132 TCTACAGTAAGTACTCCCTCTGTAAA 58.307 38.462 19.69 11.43 37.74 2.01
6563 7878 6.587206 ACAGTAAGTACTCCCTCTGTAAAC 57.413 41.667 15.49 0.00 34.95 2.01
6564 7879 6.313324 ACAGTAAGTACTCCCTCTGTAAACT 58.687 40.000 15.49 0.00 34.95 2.66
6565 7880 7.465116 ACAGTAAGTACTCCCTCTGTAAACTA 58.535 38.462 15.49 0.00 34.95 2.24
6566 7881 7.946776 ACAGTAAGTACTCCCTCTGTAAACTAA 59.053 37.037 15.49 0.00 34.95 2.24
6567 7882 8.968969 CAGTAAGTACTCCCTCTGTAAACTAAT 58.031 37.037 0.00 0.00 33.46 1.73
6575 7890 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
6576 7891 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
6577 7892 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
6578 7893 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
6579 7894 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
6627 7942 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
6628 7943 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
6670 7985 6.096282 TGTCGTGAACTGAATCTGGTATATCA 59.904 38.462 0.00 0.00 0.00 2.15
6698 8013 5.192927 CCCTCTTTGTTTGAGCCACATATA 58.807 41.667 0.00 0.00 0.00 0.86
6699 8014 5.829924 CCCTCTTTGTTTGAGCCACATATAT 59.170 40.000 0.00 0.00 0.00 0.86
6700 8015 6.322201 CCCTCTTTGTTTGAGCCACATATATT 59.678 38.462 0.00 0.00 0.00 1.28
6701 8016 7.420800 CCTCTTTGTTTGAGCCACATATATTC 58.579 38.462 0.00 0.00 0.00 1.75
6702 8017 7.333528 TCTTTGTTTGAGCCACATATATTCC 57.666 36.000 0.00 0.00 0.00 3.01
6703 8018 6.321181 TCTTTGTTTGAGCCACATATATTCCC 59.679 38.462 0.00 0.00 0.00 3.97
6706 8021 3.961480 TGAGCCACATATATTCCCGAG 57.039 47.619 0.00 0.00 0.00 4.63
6707 8022 3.506398 TGAGCCACATATATTCCCGAGA 58.494 45.455 0.00 0.00 0.00 4.04
6708 8023 3.901222 TGAGCCACATATATTCCCGAGAA 59.099 43.478 0.00 0.00 36.15 2.87
6709 8024 4.532126 TGAGCCACATATATTCCCGAGAAT 59.468 41.667 0.00 0.00 44.95 2.40
6711 8026 4.532126 AGCCACATATATTCCCGAGAATCA 59.468 41.667 0.00 0.00 41.91 2.57
6712 8027 4.631813 GCCACATATATTCCCGAGAATCAC 59.368 45.833 0.00 0.00 41.91 3.06
6729 8044 2.838736 TCACTGGCTTTCTGTGACTTC 58.161 47.619 0.00 0.00 45.32 3.01
6771 8086 8.152898 AGAAGTTCGTTGTTTATTTACCCTACT 58.847 33.333 0.00 0.00 0.00 2.57
6816 8131 4.084013 GGAGGTTGTGAAATGTCAGTAACG 60.084 45.833 6.79 0.00 34.84 3.18
6821 8136 2.740447 GTGAAATGTCAGTAACGTCCCC 59.260 50.000 0.00 0.00 33.27 4.81
6892 8207 8.078596 GCTGTTTTGACTTGATAAAGTGAGAAT 58.921 33.333 0.00 0.00 32.22 2.40
6900 8215 8.814038 ACTTGATAAAGTGAGAATTGGCTAAT 57.186 30.769 0.00 0.00 0.00 1.73
6908 8223 8.593492 AAGTGAGAATTGGCTAATTTGTTTTC 57.407 30.769 9.60 0.00 36.66 2.29
6964 8279 8.766994 ATGCACCAACCATTAGTTTTAGATAT 57.233 30.769 0.00 0.00 36.18 1.63
6967 8282 8.682710 GCACCAACCATTAGTTTTAGATATGAA 58.317 33.333 0.00 0.00 36.18 2.57
7124 8452 2.224305 CCTATGGAATCCGGTGAGGTTC 60.224 54.545 0.00 0.00 41.99 3.62
7211 8649 0.034896 CTCTGTTTACAGCCGGTGGT 59.965 55.000 1.90 4.09 43.46 4.16
7263 8711 4.489810 CTCTGAGTACCTGTACAAAGCAG 58.510 47.826 9.90 10.33 38.48 4.24
7272 8720 4.606457 CTGTACAAAGCAGGAACTATGC 57.394 45.455 0.00 0.00 44.18 3.14
7273 8721 4.002982 CTGTACAAAGCAGGAACTATGCA 58.997 43.478 0.00 0.00 46.31 3.96
7319 8767 9.825972 TCGAATCAATCTCTTTACAAAATTGAC 57.174 29.630 0.00 0.00 38.69 3.18
7320 8768 9.065871 CGAATCAATCTCTTTACAAAATTGACC 57.934 33.333 0.00 0.00 38.69 4.02
7322 8770 7.831691 TCAATCTCTTTACAAAATTGACCCA 57.168 32.000 0.00 0.00 32.86 4.51
7354 8808 9.923143 AATCTACAAAACTAAAAATACAAGCCC 57.077 29.630 0.00 0.00 0.00 5.19
7356 8810 6.151663 ACAAAACTAAAAATACAAGCCCGT 57.848 33.333 0.00 0.00 0.00 5.28
7357 8811 6.210796 ACAAAACTAAAAATACAAGCCCGTC 58.789 36.000 0.00 0.00 0.00 4.79
7358 8812 6.183360 ACAAAACTAAAAATACAAGCCCGTCA 60.183 34.615 0.00 0.00 0.00 4.35
7359 8813 6.394025 AAACTAAAAATACAAGCCCGTCAA 57.606 33.333 0.00 0.00 0.00 3.18
7360 8814 6.394025 AACTAAAAATACAAGCCCGTCAAA 57.606 33.333 0.00 0.00 0.00 2.69
7391 8848 2.489938 TACAAGCCAGGAACATCACC 57.510 50.000 0.00 0.00 0.00 4.02
7405 8862 2.306805 ACATCACCACCACACATCTCAT 59.693 45.455 0.00 0.00 0.00 2.90
7436 8893 0.976641 CTGCCTACACAGGAGGAACA 59.023 55.000 0.00 0.00 45.91 3.18
7442 8899 4.564821 GCCTACACAGGAGGAACAAACATA 60.565 45.833 0.00 0.00 45.91 2.29
7483 8940 1.296715 GCAGGAATCACGGACACCT 59.703 57.895 0.00 0.00 0.00 4.00
7484 8941 3.143675 CAGGAATCACGGACACCTG 57.856 57.895 0.00 0.00 41.29 4.00
7485 8942 0.321671 CAGGAATCACGGACACCTGT 59.678 55.000 0.00 0.00 41.91 4.00
7486 8943 1.548719 CAGGAATCACGGACACCTGTA 59.451 52.381 0.00 0.00 41.91 2.74
7487 8944 2.168521 CAGGAATCACGGACACCTGTAT 59.831 50.000 0.00 0.00 41.91 2.29
7488 8945 2.838202 AGGAATCACGGACACCTGTATT 59.162 45.455 0.00 0.00 0.00 1.89
7489 8946 3.263425 AGGAATCACGGACACCTGTATTT 59.737 43.478 0.00 0.00 0.00 1.40
7490 8947 4.468510 AGGAATCACGGACACCTGTATTTA 59.531 41.667 0.00 0.00 0.00 1.40
7491 8948 5.130477 AGGAATCACGGACACCTGTATTTAT 59.870 40.000 0.00 0.00 0.00 1.40
7492 8949 5.465724 GGAATCACGGACACCTGTATTTATC 59.534 44.000 0.00 0.00 0.00 1.75
7493 8950 5.871396 ATCACGGACACCTGTATTTATCT 57.129 39.130 0.00 0.00 0.00 1.98
7494 8951 6.971726 ATCACGGACACCTGTATTTATCTA 57.028 37.500 0.00 0.00 0.00 1.98
7495 8952 6.971726 TCACGGACACCTGTATTTATCTAT 57.028 37.500 0.00 0.00 0.00 1.98
7496 8953 8.645814 ATCACGGACACCTGTATTTATCTATA 57.354 34.615 0.00 0.00 0.00 1.31
7497 8954 8.645814 TCACGGACACCTGTATTTATCTATAT 57.354 34.615 0.00 0.00 0.00 0.86
7498 8955 9.743581 TCACGGACACCTGTATTTATCTATATA 57.256 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.442047 GGTAGTTAATTAGCAGCTGATAATCAT 57.558 33.333 31.31 21.49 35.79 2.45
6 7 8.428852 TGGTAGTTAATTAGCAGCTGATAATCA 58.571 33.333 31.31 19.17 35.79 2.57
7 8 8.713271 GTGGTAGTTAATTAGCAGCTGATAATC 58.287 37.037 31.31 21.15 35.79 1.75
8 9 7.385205 CGTGGTAGTTAATTAGCAGCTGATAAT 59.615 37.037 27.29 27.29 38.14 1.28
9 10 6.700081 CGTGGTAGTTAATTAGCAGCTGATAA 59.300 38.462 25.31 25.31 32.23 1.75
10 11 6.213677 CGTGGTAGTTAATTAGCAGCTGATA 58.786 40.000 20.43 14.08 32.23 2.15
11 12 5.050490 CGTGGTAGTTAATTAGCAGCTGAT 58.950 41.667 20.43 15.46 32.23 2.90
12 13 4.430007 CGTGGTAGTTAATTAGCAGCTGA 58.570 43.478 20.43 0.00 32.23 4.26
13 14 3.001330 GCGTGGTAGTTAATTAGCAGCTG 59.999 47.826 10.11 10.11 32.23 4.24
14 15 3.195661 GCGTGGTAGTTAATTAGCAGCT 58.804 45.455 9.82 0.00 32.23 4.24
15 16 2.933906 TGCGTGGTAGTTAATTAGCAGC 59.066 45.455 9.82 14.17 32.23 5.25
16 17 3.930229 TGTGCGTGGTAGTTAATTAGCAG 59.070 43.478 9.82 6.30 33.84 4.24
17 18 3.927854 TGTGCGTGGTAGTTAATTAGCA 58.072 40.909 5.85 5.85 0.00 3.49
18 19 4.932268 TTGTGCGTGGTAGTTAATTAGC 57.068 40.909 0.58 0.58 0.00 3.09
19 20 9.828852 TTATTTTTGTGCGTGGTAGTTAATTAG 57.171 29.630 0.00 0.00 0.00 1.73
21 22 9.530633 TTTTATTTTTGTGCGTGGTAGTTAATT 57.469 25.926 0.00 0.00 0.00 1.40
22 23 9.530633 TTTTTATTTTTGTGCGTGGTAGTTAAT 57.469 25.926 0.00 0.00 0.00 1.40
23 24 8.922058 TTTTTATTTTTGTGCGTGGTAGTTAA 57.078 26.923 0.00 0.00 0.00 2.01
45 46 8.365399 CATGCATGCATCTTCATCTTATTTTT 57.635 30.769 30.07 1.00 33.90 1.94
46 47 7.946655 CATGCATGCATCTTCATCTTATTTT 57.053 32.000 30.07 1.43 33.90 1.82
63 64 3.243301 CCCTTTACTAGCTTGCATGCATG 60.243 47.826 23.37 24.36 34.99 4.06
64 65 2.954318 CCCTTTACTAGCTTGCATGCAT 59.046 45.455 23.37 9.62 34.99 3.96
65 66 2.026356 TCCCTTTACTAGCTTGCATGCA 60.026 45.455 24.65 18.46 34.99 3.96
66 67 2.615912 CTCCCTTTACTAGCTTGCATGC 59.384 50.000 16.37 16.37 0.00 4.06
67 68 3.118261 TCCTCCCTTTACTAGCTTGCATG 60.118 47.826 0.00 0.00 0.00 4.06
68 69 3.115390 TCCTCCCTTTACTAGCTTGCAT 58.885 45.455 0.00 0.00 0.00 3.96
69 70 2.546899 TCCTCCCTTTACTAGCTTGCA 58.453 47.619 0.00 0.00 0.00 4.08
70 71 3.629142 TTCCTCCCTTTACTAGCTTGC 57.371 47.619 0.00 0.00 0.00 4.01
71 72 4.141914 ACGATTCCTCCCTTTACTAGCTTG 60.142 45.833 0.00 0.00 0.00 4.01
72 73 4.031611 ACGATTCCTCCCTTTACTAGCTT 58.968 43.478 0.00 0.00 0.00 3.74
73 74 3.385111 CACGATTCCTCCCTTTACTAGCT 59.615 47.826 0.00 0.00 0.00 3.32
74 75 3.132467 ACACGATTCCTCCCTTTACTAGC 59.868 47.826 0.00 0.00 0.00 3.42
75 76 5.105473 TCAACACGATTCCTCCCTTTACTAG 60.105 44.000 0.00 0.00 0.00 2.57
76 77 4.773674 TCAACACGATTCCTCCCTTTACTA 59.226 41.667 0.00 0.00 0.00 1.82
77 78 3.581332 TCAACACGATTCCTCCCTTTACT 59.419 43.478 0.00 0.00 0.00 2.24
78 79 3.934068 TCAACACGATTCCTCCCTTTAC 58.066 45.455 0.00 0.00 0.00 2.01
79 80 4.041198 AGTTCAACACGATTCCTCCCTTTA 59.959 41.667 0.00 0.00 0.00 1.85
80 81 3.146847 GTTCAACACGATTCCTCCCTTT 58.853 45.455 0.00 0.00 0.00 3.11
81 82 2.372172 AGTTCAACACGATTCCTCCCTT 59.628 45.455 0.00 0.00 0.00 3.95
82 83 1.978580 AGTTCAACACGATTCCTCCCT 59.021 47.619 0.00 0.00 0.00 4.20
83 84 2.474410 AGTTCAACACGATTCCTCCC 57.526 50.000 0.00 0.00 0.00 4.30
84 85 4.201822 GCAATAGTTCAACACGATTCCTCC 60.202 45.833 0.00 0.00 28.80 4.30
85 86 4.631813 AGCAATAGTTCAACACGATTCCTC 59.368 41.667 0.00 0.00 28.80 3.71
86 87 4.579869 AGCAATAGTTCAACACGATTCCT 58.420 39.130 0.00 0.00 28.80 3.36
87 88 4.946784 AGCAATAGTTCAACACGATTCC 57.053 40.909 0.00 0.00 28.80 3.01
88 89 8.015658 ACTTTAAGCAATAGTTCAACACGATTC 58.984 33.333 0.00 0.00 28.80 2.52
89 90 7.871853 ACTTTAAGCAATAGTTCAACACGATT 58.128 30.769 0.00 0.00 31.27 3.34
90 91 7.360946 GGACTTTAAGCAATAGTTCAACACGAT 60.361 37.037 0.00 0.00 0.00 3.73
91 92 6.073440 GGACTTTAAGCAATAGTTCAACACGA 60.073 38.462 0.00 0.00 0.00 4.35
92 93 6.077838 GGACTTTAAGCAATAGTTCAACACG 58.922 40.000 0.00 0.00 0.00 4.49
93 94 6.073440 TCGGACTTTAAGCAATAGTTCAACAC 60.073 38.462 0.00 0.00 0.00 3.32
94 95 5.992829 TCGGACTTTAAGCAATAGTTCAACA 59.007 36.000 0.00 0.00 0.00 3.33
95 96 6.147328 AGTCGGACTTTAAGCAATAGTTCAAC 59.853 38.462 4.45 0.00 0.00 3.18
96 97 6.147164 CAGTCGGACTTTAAGCAATAGTTCAA 59.853 38.462 8.18 0.00 0.00 2.69
97 98 5.637810 CAGTCGGACTTTAAGCAATAGTTCA 59.362 40.000 8.18 0.00 0.00 3.18
98 99 5.867716 TCAGTCGGACTTTAAGCAATAGTTC 59.132 40.000 8.18 0.00 0.00 3.01
99 100 5.790593 TCAGTCGGACTTTAAGCAATAGTT 58.209 37.500 8.18 0.00 0.00 2.24
100 101 5.401531 TCAGTCGGACTTTAAGCAATAGT 57.598 39.130 8.18 0.00 0.00 2.12
101 102 6.642950 CCTATCAGTCGGACTTTAAGCAATAG 59.357 42.308 8.18 7.12 0.00 1.73
102 103 6.322969 TCCTATCAGTCGGACTTTAAGCAATA 59.677 38.462 8.18 0.00 0.00 1.90
103 104 5.128827 TCCTATCAGTCGGACTTTAAGCAAT 59.871 40.000 8.18 0.00 0.00 3.56
104 105 4.464951 TCCTATCAGTCGGACTTTAAGCAA 59.535 41.667 8.18 0.00 0.00 3.91
105 106 4.021229 TCCTATCAGTCGGACTTTAAGCA 58.979 43.478 8.18 0.00 0.00 3.91
106 107 4.361420 GTCCTATCAGTCGGACTTTAAGC 58.639 47.826 8.18 0.00 44.90 3.09
107 108 4.096081 ACGTCCTATCAGTCGGACTTTAAG 59.904 45.833 8.18 5.75 45.88 1.85
108 109 4.012374 ACGTCCTATCAGTCGGACTTTAA 58.988 43.478 8.18 0.00 45.88 1.52
109 110 3.614092 ACGTCCTATCAGTCGGACTTTA 58.386 45.455 8.18 0.00 45.88 1.85
110 111 2.444421 ACGTCCTATCAGTCGGACTTT 58.556 47.619 8.18 1.74 45.88 2.66
111 112 2.125773 ACGTCCTATCAGTCGGACTT 57.874 50.000 8.18 0.00 45.88 3.01
112 113 2.125773 AACGTCCTATCAGTCGGACT 57.874 50.000 4.45 4.45 45.88 3.85
113 114 2.941720 ACTAACGTCCTATCAGTCGGAC 59.058 50.000 0.00 0.00 44.88 4.79
114 115 3.201290 GACTAACGTCCTATCAGTCGGA 58.799 50.000 0.00 0.00 33.98 4.55
115 116 3.605743 GACTAACGTCCTATCAGTCGG 57.394 52.381 0.00 0.00 33.98 4.79
117 118 2.599377 CGCGACTAACGTCCTATCAGTC 60.599 54.545 0.00 0.00 44.60 3.51
118 119 1.329906 CGCGACTAACGTCCTATCAGT 59.670 52.381 0.00 0.00 44.60 3.41
119 120 1.329906 ACGCGACTAACGTCCTATCAG 59.670 52.381 15.93 0.00 40.28 2.90
120 121 1.372582 ACGCGACTAACGTCCTATCA 58.627 50.000 15.93 0.00 40.28 2.15
128 129 5.878261 ATAAATAAAGGACGCGACTAACG 57.122 39.130 15.93 0.00 45.66 3.18
129 130 6.903479 CCAAATAAATAAAGGACGCGACTAAC 59.097 38.462 15.93 0.00 0.00 2.34
130 131 6.594937 ACCAAATAAATAAAGGACGCGACTAA 59.405 34.615 15.93 3.06 0.00 2.24
131 132 6.108015 ACCAAATAAATAAAGGACGCGACTA 58.892 36.000 15.93 0.00 0.00 2.59
132 133 4.939439 ACCAAATAAATAAAGGACGCGACT 59.061 37.500 15.93 7.85 0.00 4.18
133 134 5.225899 ACCAAATAAATAAAGGACGCGAC 57.774 39.130 15.93 6.56 0.00 5.19
134 135 5.181622 ACAACCAAATAAATAAAGGACGCGA 59.818 36.000 15.93 0.00 0.00 5.87
135 136 5.395642 ACAACCAAATAAATAAAGGACGCG 58.604 37.500 3.53 3.53 0.00 6.01
136 137 6.383415 TGACAACCAAATAAATAAAGGACGC 58.617 36.000 0.00 0.00 0.00 5.19
137 138 8.804688 TTTGACAACCAAATAAATAAAGGACG 57.195 30.769 0.00 0.00 39.65 4.79
172 173 8.446273 GCTGGAGCATATTAACTATACACATTG 58.554 37.037 0.00 0.00 41.59 2.82
201 208 3.053291 GCATTTGGTCCGCCACGA 61.053 61.111 0.00 0.00 46.01 4.35
210 217 4.172625 TGCAAGGTCGCATTTGGT 57.827 50.000 0.00 0.00 36.86 3.67
225 232 3.545481 CGACCGTGTGCTCGATGC 61.545 66.667 0.00 0.00 43.25 3.91
226 233 2.880879 CCGACCGTGTGCTCGATG 60.881 66.667 0.00 0.00 31.24 3.84
227 234 4.796231 GCCGACCGTGTGCTCGAT 62.796 66.667 0.00 0.00 31.24 3.59
231 238 3.649277 GATGAGCCGACCGTGTGCT 62.649 63.158 0.00 0.00 38.24 4.40
232 239 3.188786 GATGAGCCGACCGTGTGC 61.189 66.667 0.00 0.00 0.00 4.57
237 244 0.391130 TTTTCTGGATGAGCCGACCG 60.391 55.000 0.00 0.00 40.66 4.79
238 245 1.821216 TTTTTCTGGATGAGCCGACC 58.179 50.000 0.00 0.00 40.66 4.79
265 272 2.624674 ATAGGACAATGGGGCGGCAC 62.625 60.000 12.47 8.20 0.00 5.01
271 278 3.117169 TCCATTTGGATAGGACAATGGGG 60.117 47.826 9.37 0.00 39.78 4.96
284 291 3.750371 ACGTCAGATTTGTCCATTTGGA 58.250 40.909 0.00 0.00 43.08 3.53
298 305 0.313043 GACTCCAAACGGACGTCAGA 59.687 55.000 22.71 5.25 33.96 3.27
301 308 1.137513 CAAGACTCCAAACGGACGTC 58.862 55.000 7.13 7.13 33.96 4.34
313 320 4.565022 AGCTCAACTCTAAAGCAAGACTC 58.435 43.478 0.00 0.00 38.51 3.36
332 339 2.557056 TCACGTGTGTTAGAGCTAAGCT 59.443 45.455 16.51 0.00 43.88 3.74
333 340 2.942710 TCACGTGTGTTAGAGCTAAGC 58.057 47.619 16.51 0.00 0.00 3.09
334 341 6.251589 CACTATTCACGTGTGTTAGAGCTAAG 59.748 42.308 16.51 0.33 0.00 2.18
335 342 6.090783 CACTATTCACGTGTGTTAGAGCTAA 58.909 40.000 16.51 0.00 0.00 3.09
336 343 5.637809 CACTATTCACGTGTGTTAGAGCTA 58.362 41.667 16.51 0.00 0.00 3.32
337 344 4.486090 CACTATTCACGTGTGTTAGAGCT 58.514 43.478 16.51 0.00 0.00 4.09
360 367 3.123621 GGTTGCAGAAGATACAAGTCACG 59.876 47.826 0.00 0.00 0.00 4.35
362 369 3.559171 GGGGTTGCAGAAGATACAAGTCA 60.559 47.826 0.00 0.00 0.00 3.41
364 371 2.644798 AGGGGTTGCAGAAGATACAAGT 59.355 45.455 0.00 0.00 0.00 3.16
412 419 7.353497 TGCGTTTTTGTAAATCTTCGTATTGA 58.647 30.769 0.00 0.00 0.00 2.57
413 420 7.541743 TGCGTTTTTGTAAATCTTCGTATTG 57.458 32.000 0.00 0.00 0.00 1.90
418 425 7.987486 TGTTTATGCGTTTTTGTAAATCTTCG 58.013 30.769 0.00 0.00 0.00 3.79
421 428 9.469807 TTCATGTTTATGCGTTTTTGTAAATCT 57.530 25.926 0.00 0.00 34.21 2.40
431 438 4.938080 TGTGGTTTCATGTTTATGCGTTT 58.062 34.783 0.00 0.00 34.21 3.60
444 451 4.100035 TGGTGTTTGCATAATGTGGTTTCA 59.900 37.500 0.00 0.00 0.00 2.69
445 452 4.626042 TGGTGTTTGCATAATGTGGTTTC 58.374 39.130 0.00 0.00 0.00 2.78
449 456 4.453177 TGATGGTGTTTGCATAATGTGG 57.547 40.909 0.00 0.00 0.00 4.17
450 457 4.736307 CGATGATGGTGTTTGCATAATGTG 59.264 41.667 0.00 0.00 0.00 3.21
451 458 4.398988 ACGATGATGGTGTTTGCATAATGT 59.601 37.500 0.00 0.00 0.00 2.71
453 460 5.581126 AACGATGATGGTGTTTGCATAAT 57.419 34.783 0.00 0.00 0.00 1.28
487 496 8.585471 AAGAAATTATGGAGAATGAAGCTTCA 57.415 30.769 30.23 30.23 42.14 3.02
511 520 2.343101 CTTGCCGTATCCTGTTCGAAA 58.657 47.619 0.00 0.00 0.00 3.46
515 524 2.158957 TGATCCTTGCCGTATCCTGTTC 60.159 50.000 0.00 0.00 0.00 3.18
518 527 2.158900 AGTTGATCCTTGCCGTATCCTG 60.159 50.000 0.00 0.00 0.00 3.86
524 533 2.738643 CGTCATAGTTGATCCTTGCCGT 60.739 50.000 0.00 0.00 33.56 5.68
528 537 4.509230 CCATCACGTCATAGTTGATCCTTG 59.491 45.833 0.00 0.00 33.56 3.61
536 545 6.235664 AGTTTAAACCCATCACGTCATAGTT 58.764 36.000 14.72 0.00 0.00 2.24
566 575 7.782049 TCGACAATGAGAGGACTGTTATTTAT 58.218 34.615 0.00 0.00 0.00 1.40
578 587 3.303881 TCAGTGTTCGACAATGAGAGG 57.696 47.619 12.04 0.00 46.53 3.69
652 670 7.880160 TTATATAGCTTGGCACTTGACAAAT 57.120 32.000 0.00 0.00 43.43 2.32
791 833 5.365403 AAAACTTTCCGCATCGAATTACA 57.635 34.783 0.00 0.00 0.00 2.41
818 861 1.153881 GTGGGTCGCCTAGTCGAAC 60.154 63.158 1.81 1.81 44.80 3.95
913 957 1.081641 CAGTAGCGACAACGACGGT 60.082 57.895 0.00 0.00 42.66 4.83
959 1003 2.364448 GAGGAGAAGTCGGGGGCT 60.364 66.667 0.00 0.00 0.00 5.19
1701 2634 7.797123 GTGAGTAGGAAATAACAAAAACACTCG 59.203 37.037 0.00 0.00 33.15 4.18
1705 2638 7.556733 ACGTGAGTAGGAAATAACAAAAACA 57.443 32.000 0.00 0.00 46.88 2.83
1739 2672 3.616577 CGACATACGCACGCGCAT 61.617 61.111 12.02 0.37 44.19 4.73
1749 2682 0.029035 ACACCTCGATCGCGACATAC 59.971 55.000 12.93 2.37 42.51 2.39
1887 2954 2.143122 CGGACAGAAGCTTTAGCAACA 58.857 47.619 0.00 0.00 45.16 3.33
1955 3022 6.575162 AGTGTAACAATTGAATTCACCTCC 57.425 37.500 13.59 0.00 41.43 4.30
1956 3023 8.946085 TCATAGTGTAACAATTGAATTCACCTC 58.054 33.333 13.59 0.00 41.43 3.85
1957 3024 8.862325 TCATAGTGTAACAATTGAATTCACCT 57.138 30.769 13.59 0.00 41.43 4.00
1958 3025 9.906660 TTTCATAGTGTAACAATTGAATTCACC 57.093 29.630 13.59 1.20 41.43 4.02
1966 3033 9.897744 ACATCAAGTTTCATAGTGTAACAATTG 57.102 29.630 3.24 3.24 41.43 2.32
1968 3035 9.897744 CAACATCAAGTTTCATAGTGTAACAAT 57.102 29.630 3.02 0.00 37.65 2.71
1969 3036 8.898761 ACAACATCAAGTTTCATAGTGTAACAA 58.101 29.630 3.02 0.00 37.65 2.83
1970 3037 8.341903 CACAACATCAAGTTTCATAGTGTAACA 58.658 33.333 3.02 0.00 37.65 2.41
1971 3038 7.803189 CCACAACATCAAGTTTCATAGTGTAAC 59.197 37.037 0.00 0.00 38.74 2.50
1972 3039 7.500892 ACCACAACATCAAGTTTCATAGTGTAA 59.499 33.333 0.00 0.00 38.74 2.41
1973 3040 6.995686 ACCACAACATCAAGTTTCATAGTGTA 59.004 34.615 0.00 0.00 38.74 2.90
1974 3041 5.827797 ACCACAACATCAAGTTTCATAGTGT 59.172 36.000 0.00 0.00 38.74 3.55
1975 3042 6.205464 AGACCACAACATCAAGTTTCATAGTG 59.795 38.462 0.00 0.00 38.74 2.74
1976 3043 6.299141 AGACCACAACATCAAGTTTCATAGT 58.701 36.000 0.00 0.00 38.74 2.12
1977 3044 6.808008 AGACCACAACATCAAGTTTCATAG 57.192 37.500 0.00 0.00 38.74 2.23
1978 3045 8.862325 AATAGACCACAACATCAAGTTTCATA 57.138 30.769 0.00 0.00 38.74 2.15
1979 3046 7.765695 AATAGACCACAACATCAAGTTTCAT 57.234 32.000 0.00 0.00 38.74 2.57
1980 3047 7.936847 ACTAATAGACCACAACATCAAGTTTCA 59.063 33.333 0.00 0.00 38.74 2.69
1981 3048 8.324163 ACTAATAGACCACAACATCAAGTTTC 57.676 34.615 0.00 0.00 38.74 2.78
1982 3049 8.567948 CAACTAATAGACCACAACATCAAGTTT 58.432 33.333 0.00 0.00 38.74 2.66
1983 3050 7.174946 CCAACTAATAGACCACAACATCAAGTT 59.825 37.037 0.00 0.00 42.42 2.66
1984 3051 6.655003 CCAACTAATAGACCACAACATCAAGT 59.345 38.462 0.00 0.00 0.00 3.16
1985 3052 6.094048 CCCAACTAATAGACCACAACATCAAG 59.906 42.308 0.00 0.00 0.00 3.02
1986 3053 5.943416 CCCAACTAATAGACCACAACATCAA 59.057 40.000 0.00 0.00 0.00 2.57
1987 3054 5.496556 CCCAACTAATAGACCACAACATCA 58.503 41.667 0.00 0.00 0.00 3.07
2024 3270 1.442769 CCATATACACCTCATGCGCC 58.557 55.000 4.18 0.00 0.00 6.53
2233 3479 2.093658 GCGGGGACATCTTCTAACAGAA 60.094 50.000 0.00 0.00 32.50 3.02
2412 3658 3.009143 GGGTACTTCATCATGTATCCCCC 59.991 52.174 0.00 0.00 34.70 5.40
2440 3689 9.466497 ACACCAGAACTCACATGAATTATTATT 57.534 29.630 0.00 0.00 0.00 1.40
2444 3693 6.372659 GTGACACCAGAACTCACATGAATTAT 59.627 38.462 0.00 0.00 35.39 1.28
2446 3695 4.516698 GTGACACCAGAACTCACATGAATT 59.483 41.667 0.00 0.00 35.39 2.17
2447 3696 4.067896 GTGACACCAGAACTCACATGAAT 58.932 43.478 0.00 0.00 35.39 2.57
2544 3793 1.594310 GAGAAGAACCCAGCTCGCT 59.406 57.895 0.00 0.00 0.00 4.93
2561 3810 5.178096 TGAGAAGATTAAAGCATGTGGGA 57.822 39.130 0.00 0.00 0.00 4.37
2666 3915 3.863142 AAATTCCAGCTCAATGACAGC 57.137 42.857 0.00 0.00 37.12 4.40
2689 3938 8.920174 TCAATCCATCAAGAAATGCATTAAGAT 58.080 29.630 13.39 10.58 0.00 2.40
2788 4037 2.636647 TCAGCAACCATGACTTGTGA 57.363 45.000 0.00 0.29 0.00 3.58
2816 4065 5.067153 TGCCACAACTTTATATCCAATTCCG 59.933 40.000 0.00 0.00 0.00 4.30
2843 4092 8.547967 TTCCACATGAAAAGTTATGTAGAGTC 57.452 34.615 0.00 0.00 35.86 3.36
2889 4138 9.619316 CCACAGAATGATATTGTTTAACGAAAA 57.381 29.630 0.00 0.00 39.69 2.29
2942 4191 4.569966 CCATGACTTTTGCTAGCTAGTGAG 59.430 45.833 21.62 15.35 0.00 3.51
2949 4198 5.126396 AGAAAACCATGACTTTTGCTAGC 57.874 39.130 8.10 8.10 0.00 3.42
3054 4305 3.696051 GGTGATGCACATTCACATAAGGT 59.304 43.478 18.11 0.00 35.86 3.50
3089 4340 1.934525 CTTGCATGCAAACAAACAGCA 59.065 42.857 31.37 7.85 43.14 4.41
3090 4341 1.333435 GCTTGCATGCAAACAAACAGC 60.333 47.619 31.37 24.97 35.33 4.40
3191 4442 1.382522 ATCCATAAGTTGCACCAGCG 58.617 50.000 0.00 0.00 46.23 5.18
3211 4462 6.796785 TGACAAGATCAGGACTATCATTCA 57.203 37.500 0.00 0.00 31.91 2.57
3344 4595 4.481072 AGGCCCTAATAGTCGTCATACTT 58.519 43.478 0.00 0.00 0.00 2.24
3672 4931 2.715046 CTGAGAGGCAAGGCAACATTA 58.285 47.619 0.00 0.00 41.41 1.90
3693 4952 3.194861 TCGAATTTATGCTTCTCGTGGG 58.805 45.455 0.00 0.00 0.00 4.61
3751 5010 6.402118 GCGAAATCAACAAGTCAAGTATAGCA 60.402 38.462 0.00 0.00 0.00 3.49
3854 5113 7.464265 TCCTCCAGGCCCTATATAAATAACATT 59.536 37.037 0.00 0.00 34.44 2.71
3886 5145 1.451028 CACCTGCTTGGCCTAGCTC 60.451 63.158 33.91 12.13 41.76 4.09
4056 5315 7.563188 TGGGCCAAGCTTATAAAATTCTAATGA 59.437 33.333 2.13 0.00 0.00 2.57
4068 5327 3.716353 TGATCTTCTGGGCCAAGCTTATA 59.284 43.478 8.04 0.00 0.00 0.98
4069 5328 2.511218 TGATCTTCTGGGCCAAGCTTAT 59.489 45.455 8.04 0.00 0.00 1.73
4328 5588 1.456923 CGAGCCATACGCACATACATG 59.543 52.381 0.00 0.00 41.38 3.21
4345 5605 2.736343 TACCCGTGTGTTGCGACGAG 62.736 60.000 0.00 0.00 37.81 4.18
4346 5606 2.347242 TTACCCGTGTGTTGCGACGA 62.347 55.000 0.00 0.00 37.81 4.20
4347 5607 1.286354 ATTACCCGTGTGTTGCGACG 61.286 55.000 0.00 0.00 35.31 5.12
4348 5608 0.869730 AATTACCCGTGTGTTGCGAC 59.130 50.000 0.00 0.00 0.00 5.19
4349 5609 2.339418 CTAATTACCCGTGTGTTGCGA 58.661 47.619 0.00 0.00 0.00 5.10
4350 5610 1.201987 GCTAATTACCCGTGTGTTGCG 60.202 52.381 0.00 0.00 0.00 4.85
4351 5611 2.081462 AGCTAATTACCCGTGTGTTGC 58.919 47.619 0.00 0.00 0.00 4.17
4352 5612 4.501071 ACTAGCTAATTACCCGTGTGTTG 58.499 43.478 0.00 0.00 0.00 3.33
4353 5613 4.465305 AGACTAGCTAATTACCCGTGTGTT 59.535 41.667 0.00 0.00 0.00 3.32
4354 5614 4.021916 AGACTAGCTAATTACCCGTGTGT 58.978 43.478 0.00 0.00 0.00 3.72
4355 5615 4.650754 AGACTAGCTAATTACCCGTGTG 57.349 45.455 0.00 0.00 0.00 3.82
4356 5616 5.186409 TGAAAGACTAGCTAATTACCCGTGT 59.814 40.000 0.00 0.00 0.00 4.49
4357 5617 5.519206 GTGAAAGACTAGCTAATTACCCGTG 59.481 44.000 0.00 0.00 0.00 4.94
4358 5618 5.421374 AGTGAAAGACTAGCTAATTACCCGT 59.579 40.000 0.00 0.00 30.86 5.28
4359 5619 5.903810 AGTGAAAGACTAGCTAATTACCCG 58.096 41.667 0.00 0.00 30.86 5.28
4369 5629 9.278734 GCATTTGTTTATTAGTGAAAGACTAGC 57.721 33.333 0.00 0.00 38.45 3.42
4372 5632 9.846248 GATGCATTTGTTTATTAGTGAAAGACT 57.154 29.630 0.00 0.00 38.88 3.24
4373 5633 9.624697 TGATGCATTTGTTTATTAGTGAAAGAC 57.375 29.630 0.00 0.00 0.00 3.01
4374 5634 9.624697 GTGATGCATTTGTTTATTAGTGAAAGA 57.375 29.630 0.00 0.00 0.00 2.52
4375 5635 9.630098 AGTGATGCATTTGTTTATTAGTGAAAG 57.370 29.630 0.00 0.00 0.00 2.62
4376 5636 9.409312 CAGTGATGCATTTGTTTATTAGTGAAA 57.591 29.630 0.00 0.00 0.00 2.69
4377 5637 8.575589 ACAGTGATGCATTTGTTTATTAGTGAA 58.424 29.630 0.00 0.00 0.00 3.18
4378 5638 8.109705 ACAGTGATGCATTTGTTTATTAGTGA 57.890 30.769 0.00 0.00 0.00 3.41
4379 5639 8.239314 AGACAGTGATGCATTTGTTTATTAGTG 58.761 33.333 0.00 0.00 0.00 2.74
4380 5640 8.340618 AGACAGTGATGCATTTGTTTATTAGT 57.659 30.769 0.00 0.00 0.00 2.24
4381 5641 9.708222 GTAGACAGTGATGCATTTGTTTATTAG 57.292 33.333 0.00 0.00 0.00 1.73
4382 5642 9.225436 TGTAGACAGTGATGCATTTGTTTATTA 57.775 29.630 0.00 0.00 0.00 0.98
4383 5643 8.109705 TGTAGACAGTGATGCATTTGTTTATT 57.890 30.769 0.00 0.00 0.00 1.40
4384 5644 7.686438 TGTAGACAGTGATGCATTTGTTTAT 57.314 32.000 0.00 0.69 0.00 1.40
4385 5645 7.361971 CCATGTAGACAGTGATGCATTTGTTTA 60.362 37.037 0.00 3.64 0.00 2.01
4386 5646 6.384224 CATGTAGACAGTGATGCATTTGTTT 58.616 36.000 0.00 4.60 0.00 2.83
4387 5647 5.106038 CCATGTAGACAGTGATGCATTTGTT 60.106 40.000 0.00 1.37 0.00 2.83
4388 5648 4.397103 CCATGTAGACAGTGATGCATTTGT 59.603 41.667 0.00 6.39 0.00 2.83
4389 5649 4.201980 CCCATGTAGACAGTGATGCATTTG 60.202 45.833 0.00 2.88 0.00 2.32
4390 5650 3.949754 CCCATGTAGACAGTGATGCATTT 59.050 43.478 0.00 0.00 0.00 2.32
4391 5651 3.200605 TCCCATGTAGACAGTGATGCATT 59.799 43.478 0.00 0.00 0.00 3.56
4392 5652 2.773661 TCCCATGTAGACAGTGATGCAT 59.226 45.455 0.00 0.00 0.00 3.96
4393 5653 2.093500 GTCCCATGTAGACAGTGATGCA 60.093 50.000 0.00 0.00 34.27 3.96
4394 5654 2.169352 AGTCCCATGTAGACAGTGATGC 59.831 50.000 13.77 0.00 36.68 3.91
4395 5655 5.105351 TGTTAGTCCCATGTAGACAGTGATG 60.105 44.000 13.77 0.00 36.68 3.07
4396 5656 5.023452 TGTTAGTCCCATGTAGACAGTGAT 58.977 41.667 13.77 0.00 36.68 3.06
4397 5657 4.412843 TGTTAGTCCCATGTAGACAGTGA 58.587 43.478 13.77 0.00 36.68 3.41
4398 5658 4.801330 TGTTAGTCCCATGTAGACAGTG 57.199 45.455 13.77 0.00 36.68 3.66
4399 5659 5.818678 TTTGTTAGTCCCATGTAGACAGT 57.181 39.130 13.77 0.00 36.68 3.55
4400 5660 7.148239 GGAAATTTGTTAGTCCCATGTAGACAG 60.148 40.741 13.77 0.00 36.68 3.51
4401 5661 6.657541 GGAAATTTGTTAGTCCCATGTAGACA 59.342 38.462 13.77 0.00 36.68 3.41
4402 5662 7.085052 GGAAATTTGTTAGTCCCATGTAGAC 57.915 40.000 0.00 5.23 34.31 2.59
4411 5671 5.946377 ACATCTCTGGGAAATTTGTTAGTCC 59.054 40.000 0.00 0.00 0.00 3.85
4412 5672 8.561738 TTACATCTCTGGGAAATTTGTTAGTC 57.438 34.615 0.00 0.00 0.00 2.59
4413 5673 8.934023 TTTACATCTCTGGGAAATTTGTTAGT 57.066 30.769 0.00 0.00 0.00 2.24
4418 5678 9.586435 GGTTTATTTACATCTCTGGGAAATTTG 57.414 33.333 0.00 0.00 0.00 2.32
4419 5679 9.320295 TGGTTTATTTACATCTCTGGGAAATTT 57.680 29.630 0.00 0.00 0.00 1.82
4420 5680 8.749354 GTGGTTTATTTACATCTCTGGGAAATT 58.251 33.333 0.00 0.00 0.00 1.82
4421 5681 8.116026 AGTGGTTTATTTACATCTCTGGGAAAT 58.884 33.333 0.00 0.00 0.00 2.17
4422 5682 7.466804 AGTGGTTTATTTACATCTCTGGGAAA 58.533 34.615 0.00 0.00 0.00 3.13
4423 5683 7.027874 AGTGGTTTATTTACATCTCTGGGAA 57.972 36.000 0.00 0.00 0.00 3.97
4424 5684 6.636454 AGTGGTTTATTTACATCTCTGGGA 57.364 37.500 0.00 0.00 0.00 4.37
4425 5685 7.703058 AAAGTGGTTTATTTACATCTCTGGG 57.297 36.000 0.00 0.00 0.00 4.45
4426 5686 9.226606 TGTAAAGTGGTTTATTTACATCTCTGG 57.773 33.333 6.45 0.00 43.41 3.86
4436 5696 9.921637 CCAACATATGTGTAAAGTGGTTTATTT 57.078 29.630 9.63 0.00 37.67 1.40
4437 5697 9.303116 TCCAACATATGTGTAAAGTGGTTTATT 57.697 29.630 17.51 0.00 37.67 1.40
4438 5698 8.871629 TCCAACATATGTGTAAAGTGGTTTAT 57.128 30.769 17.51 0.00 37.67 1.40
4439 5699 8.693120 TTCCAACATATGTGTAAAGTGGTTTA 57.307 30.769 17.51 6.20 37.67 2.01
4440 5700 7.589958 TTCCAACATATGTGTAAAGTGGTTT 57.410 32.000 17.51 0.00 37.67 3.27
4441 5701 7.775053 ATTCCAACATATGTGTAAAGTGGTT 57.225 32.000 17.51 7.67 37.67 3.67
4442 5702 8.736244 GTTATTCCAACATATGTGTAAAGTGGT 58.264 33.333 17.51 6.25 37.67 4.16
4443 5703 8.956426 AGTTATTCCAACATATGTGTAAAGTGG 58.044 33.333 9.63 12.05 37.67 4.00
4470 5730 9.699410 TGGAATAACAATCACATTAGGATTTCT 57.301 29.630 0.00 0.00 32.86 2.52
4880 6141 0.106268 TTTTGTTGAGCCCTGAGCCA 60.106 50.000 0.00 0.00 45.47 4.75
4943 6204 1.310933 GGGCACATTCAGCTCACAGG 61.311 60.000 0.00 0.00 31.20 4.00
4981 6242 9.525826 CAAAGAGATAGGGATTTAATGGCTTAT 57.474 33.333 0.00 0.00 0.00 1.73
4986 6247 6.491403 CCCACAAAGAGATAGGGATTTAATGG 59.509 42.308 0.00 0.00 42.25 3.16
5182 6443 5.023533 AGTGTGTTAGACAGAAGCAAAGA 57.976 39.130 0.00 0.00 34.28 2.52
5183 6444 5.986135 ACTAGTGTGTTAGACAGAAGCAAAG 59.014 40.000 0.00 0.00 34.28 2.77
5184 6445 5.914033 ACTAGTGTGTTAGACAGAAGCAAA 58.086 37.500 0.00 0.00 34.28 3.68
5226 6487 3.002656 ACAAATGAGTGCACAAGAAGACG 59.997 43.478 21.04 2.68 0.00 4.18
5322 6583 4.195416 CCCTCATAGCTTTCCTCTTTGAC 58.805 47.826 0.00 0.00 0.00 3.18
5325 6586 2.511637 CCCCCTCATAGCTTTCCTCTTT 59.488 50.000 0.00 0.00 0.00 2.52
5338 6599 2.176364 CTGGAATTGACATCCCCCTCAT 59.824 50.000 0.00 0.00 36.04 2.90
5405 6666 4.373156 AAGGAAAAGTGATACTGCAGGT 57.627 40.909 19.93 6.07 0.00 4.00
5519 6780 8.071368 TCAGGTTGACGAATAAAACATTTGTAC 58.929 33.333 0.00 0.00 0.00 2.90
5684 6948 3.245371 ACTGACCAATCCATTGTCCATGT 60.245 43.478 0.00 0.00 36.06 3.21
5711 6975 7.199078 ACTTGAACTGATGAAAGAAAAGAAGC 58.801 34.615 0.00 0.00 0.00 3.86
5760 7025 5.632347 CAGTCCAAAACAAAATGAGATGCTC 59.368 40.000 0.00 0.00 0.00 4.26
5925 7191 7.034967 ACATAAGGGGTACTTCCAACATAAA 57.965 36.000 8.16 0.00 40.64 1.40
5926 7192 6.645884 ACATAAGGGGTACTTCCAACATAA 57.354 37.500 8.16 0.00 40.64 1.90
5966 7232 7.517614 TTACACAATAAACACATGGACACAT 57.482 32.000 0.00 0.00 37.99 3.21
5967 7233 6.944234 TTACACAATAAACACATGGACACA 57.056 33.333 0.00 0.00 0.00 3.72
5970 7236 9.515020 CCATTATTACACAATAAACACATGGAC 57.485 33.333 0.00 0.00 39.46 4.02
5971 7237 8.194104 GCCATTATTACACAATAAACACATGGA 58.806 33.333 0.00 0.00 39.46 3.41
5973 7239 9.585099 AAGCCATTATTACACAATAAACACATG 57.415 29.630 0.00 0.00 39.46 3.21
5989 7255 7.592885 AATATCTGTGCTTCAAGCCATTATT 57.407 32.000 7.01 8.17 41.51 1.40
5990 7256 8.874744 ATAATATCTGTGCTTCAAGCCATTAT 57.125 30.769 7.01 3.42 41.51 1.28
5991 7257 8.696043 AATAATATCTGTGCTTCAAGCCATTA 57.304 30.769 7.01 1.28 41.51 1.90
6019 7285 5.863965 TGGGGGAGAAAATTTGAAATGAAC 58.136 37.500 0.00 0.00 0.00 3.18
6041 7307 7.011482 GTGCTAACAGAACCTTGGTATATCTTG 59.989 40.741 0.00 0.00 0.00 3.02
6060 7326 6.603095 CAAACTAATGGACAGAAGTGCTAAC 58.397 40.000 0.00 0.00 36.96 2.34
6063 7329 3.503748 GCAAACTAATGGACAGAAGTGCT 59.496 43.478 0.00 0.00 36.96 4.40
6065 7331 5.615544 CGAAGCAAACTAATGGACAGAAGTG 60.616 44.000 0.00 0.00 0.00 3.16
6066 7332 4.452455 CGAAGCAAACTAATGGACAGAAGT 59.548 41.667 0.00 0.00 0.00 3.01
6088 7354 4.069304 TGGTGGTGTCCTAAATTCTTTCG 58.931 43.478 0.00 0.00 0.00 3.46
6092 7358 2.986728 AGGTGGTGGTGTCCTAAATTCT 59.013 45.455 0.00 0.00 0.00 2.40
6161 7427 6.240145 TGCAAGCCATATATGAGAAATAGCA 58.760 36.000 14.54 11.00 0.00 3.49
6277 7543 1.981256 ACACAAGGTTGGATGACCAC 58.019 50.000 0.00 0.00 46.80 4.16
6314 7604 3.055094 GGTAGACTCAAGGCCATTCTTCA 60.055 47.826 5.01 0.00 0.00 3.02
6347 7654 2.076863 CTCCAAGTTAGGCCAACGAAG 58.923 52.381 5.01 3.45 42.35 3.79
6549 7864 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
6550 7865 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
6551 7866 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
6552 7867 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
6553 7868 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
6601 7916 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
6602 7917 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
6603 7918 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
6604 7919 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
6605 7920 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
6606 7921 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
6607 7922 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
6608 7923 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
6609 7924 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
6610 7925 9.289782 GAAGTACTCCCTCCGTAAACTAATATA 57.710 37.037 0.00 0.00 0.00 0.86
6611 7926 7.040823 CGAAGTACTCCCTCCGTAAACTAATAT 60.041 40.741 0.00 0.00 0.00 1.28
6612 7927 6.260936 CGAAGTACTCCCTCCGTAAACTAATA 59.739 42.308 0.00 0.00 0.00 0.98
6613 7928 5.067023 CGAAGTACTCCCTCCGTAAACTAAT 59.933 44.000 0.00 0.00 0.00 1.73
6614 7929 4.396166 CGAAGTACTCCCTCCGTAAACTAA 59.604 45.833 0.00 0.00 0.00 2.24
6615 7930 3.941483 CGAAGTACTCCCTCCGTAAACTA 59.059 47.826 0.00 0.00 0.00 2.24
6616 7931 2.751806 CGAAGTACTCCCTCCGTAAACT 59.248 50.000 0.00 0.00 0.00 2.66
6617 7932 2.733542 GCGAAGTACTCCCTCCGTAAAC 60.734 54.545 0.00 0.00 0.00 2.01
6618 7933 1.474077 GCGAAGTACTCCCTCCGTAAA 59.526 52.381 0.00 0.00 0.00 2.01
6619 7934 1.098050 GCGAAGTACTCCCTCCGTAA 58.902 55.000 0.00 0.00 0.00 3.18
6620 7935 0.254178 AGCGAAGTACTCCCTCCGTA 59.746 55.000 0.00 0.00 0.00 4.02
6621 7936 1.001145 AGCGAAGTACTCCCTCCGT 60.001 57.895 0.00 0.00 0.00 4.69
6622 7937 1.433879 CAGCGAAGTACTCCCTCCG 59.566 63.158 0.00 0.00 0.00 4.63
6623 7938 1.142097 GCAGCGAAGTACTCCCTCC 59.858 63.158 0.00 0.00 0.00 4.30
6624 7939 1.142097 GGCAGCGAAGTACTCCCTC 59.858 63.158 0.00 0.00 0.00 4.30
6625 7940 2.359967 GGGCAGCGAAGTACTCCCT 61.360 63.158 7.65 0.00 0.00 4.20
6626 7941 1.900545 AAGGGCAGCGAAGTACTCCC 61.901 60.000 6.92 6.92 0.00 4.30
6627 7942 0.741221 CAAGGGCAGCGAAGTACTCC 60.741 60.000 0.00 0.00 0.00 3.85
6628 7943 0.037232 ACAAGGGCAGCGAAGTACTC 60.037 55.000 0.00 0.00 0.00 2.59
6670 7985 1.688735 GCTCAAACAAAGAGGGCCTTT 59.311 47.619 7.89 0.00 45.48 3.11
6698 8013 1.207791 AGCCAGTGATTCTCGGGAAT 58.792 50.000 11.13 11.13 43.99 3.01
6699 8014 0.984230 AAGCCAGTGATTCTCGGGAA 59.016 50.000 0.00 0.00 35.78 3.97
6700 8015 0.984230 AAAGCCAGTGATTCTCGGGA 59.016 50.000 8.79 0.00 0.00 5.14
6701 8016 1.065854 AGAAAGCCAGTGATTCTCGGG 60.066 52.381 0.00 1.12 0.00 5.14
6702 8017 2.005451 CAGAAAGCCAGTGATTCTCGG 58.995 52.381 0.00 0.00 31.26 4.63
6703 8018 2.414481 CACAGAAAGCCAGTGATTCTCG 59.586 50.000 0.00 0.00 35.33 4.04
6706 8021 3.406764 AGTCACAGAAAGCCAGTGATTC 58.593 45.455 0.00 0.00 43.35 2.52
6707 8022 3.498774 AGTCACAGAAAGCCAGTGATT 57.501 42.857 0.00 0.00 43.35 2.57
6708 8023 3.406764 GAAGTCACAGAAAGCCAGTGAT 58.593 45.455 0.00 0.00 43.35 3.06
6709 8024 2.485479 GGAAGTCACAGAAAGCCAGTGA 60.485 50.000 0.00 0.00 39.74 3.41
6711 8026 1.541233 CGGAAGTCACAGAAAGCCAGT 60.541 52.381 0.00 0.00 0.00 4.00
6712 8027 1.151668 CGGAAGTCACAGAAAGCCAG 58.848 55.000 0.00 0.00 0.00 4.85
6729 8044 4.927978 ACTTCTGATACTCAGGAATCGG 57.072 45.455 4.43 0.00 44.39 4.18
6752 8067 5.933463 TCCACAGTAGGGTAAATAAACAACG 59.067 40.000 0.00 0.00 0.00 4.10
6771 8086 2.438021 ACAACTCCTTTAGCTGTCCACA 59.562 45.455 0.00 0.00 27.95 4.17
6816 8131 0.600255 CACACTCAACACTCGGGGAC 60.600 60.000 0.00 0.00 0.00 4.46
6821 8136 5.845985 ATAAACATCACACTCAACACTCG 57.154 39.130 0.00 0.00 0.00 4.18
6865 8180 6.767902 TCTCACTTTATCAAGTCAAAACAGCT 59.232 34.615 0.00 0.00 41.69 4.24
6964 8279 7.389330 ACGTATCAAGTATGGTTTCACATTTCA 59.611 33.333 0.00 0.00 32.39 2.69
6967 8282 6.876789 TGACGTATCAAGTATGGTTTCACATT 59.123 34.615 0.00 0.00 32.39 2.71
7124 8452 6.876155 TCATCCAAACATCATTTGGTATTGG 58.124 36.000 16.03 4.41 46.75 3.16
7211 8649 1.191535 AGGCTACATCGGTTGTGCTA 58.808 50.000 2.02 0.00 39.48 3.49
7263 8711 4.939509 ACGTACACAAATGCATAGTTCC 57.060 40.909 0.00 0.00 0.00 3.62
7270 8718 3.312697 TGCTTTGTACGTACACAAATGCA 59.687 39.130 27.36 25.47 44.92 3.96
7271 8719 3.879427 TGCTTTGTACGTACACAAATGC 58.121 40.909 27.36 23.53 44.92 3.56
7272 8720 4.781026 CGATGCTTTGTACGTACACAAATG 59.219 41.667 27.36 15.74 44.92 2.32
7273 8721 4.687018 TCGATGCTTTGTACGTACACAAAT 59.313 37.500 27.36 17.61 44.92 2.32
7330 8778 7.229106 ACGGGCTTGTATTTTTAGTTTTGTAGA 59.771 33.333 0.00 0.00 0.00 2.59
7331 8779 7.364970 ACGGGCTTGTATTTTTAGTTTTGTAG 58.635 34.615 0.00 0.00 0.00 2.74
7359 8813 6.306987 TCCTGGCTTGTATCTTCTTCTTTTT 58.693 36.000 0.00 0.00 0.00 1.94
7360 8814 5.880901 TCCTGGCTTGTATCTTCTTCTTTT 58.119 37.500 0.00 0.00 0.00 2.27
7364 8821 4.579869 TGTTCCTGGCTTGTATCTTCTTC 58.420 43.478 0.00 0.00 0.00 2.87
7367 8824 4.333926 GTGATGTTCCTGGCTTGTATCTTC 59.666 45.833 0.00 0.00 0.00 2.87
7391 8848 4.036616 TGTTTGTTCATGAGATGTGTGGTG 59.963 41.667 0.00 0.00 0.00 4.17
7405 8862 2.293122 GTGTAGGCAGCATGTTTGTTCA 59.707 45.455 0.00 0.00 39.31 3.18
7436 8893 1.349688 TCGTGGAAGGTGCCTATGTTT 59.650 47.619 0.00 0.00 0.00 2.83
7442 8899 1.079127 CGATTCGTGGAAGGTGCCT 60.079 57.895 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.