Multiple sequence alignment - TraesCS5B01G114200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G114200 chr5B 100.000 3557 0 0 1 3557 185185177 185181621 0.000000e+00 6569.0
1 TraesCS5B01G114200 chr5B 94.835 910 30 10 2 905 456330389 456331287 0.000000e+00 1404.0
2 TraesCS5B01G114200 chr5B 94.895 901 35 8 2 897 614992159 614991265 0.000000e+00 1399.0
3 TraesCS5B01G114200 chr5B 94.983 897 35 8 2 894 636445095 636445985 0.000000e+00 1399.0
4 TraesCS5B01G114200 chr5B 94.279 909 41 8 2 907 231008964 231008064 0.000000e+00 1380.0
5 TraesCS5B01G114200 chr5B 82.996 988 108 28 1620 2584 17934607 17935557 0.000000e+00 839.0
6 TraesCS5B01G114200 chr5B 89.385 537 48 5 3028 3557 17936006 17936540 0.000000e+00 667.0
7 TraesCS5B01G114200 chr5B 81.786 280 39 7 2608 2878 534149981 534149705 1.290000e-54 224.0
8 TraesCS5B01G114200 chr5B 80.816 245 30 11 1250 1482 17922701 17922940 3.650000e-40 176.0
9 TraesCS5B01G114200 chr5B 84.106 151 13 6 2841 2990 17935883 17936023 6.190000e-28 135.0
10 TraesCS5B01G114200 chr2D 91.552 1598 94 18 1618 3187 630470522 630468938 0.000000e+00 2165.0
11 TraesCS5B01G114200 chr2D 93.913 230 14 0 894 1123 630471204 630470975 7.310000e-92 348.0
12 TraesCS5B01G114200 chr2D 84.530 362 28 11 1253 1612 630470835 630470500 2.050000e-87 333.0
13 TraesCS5B01G114200 chr2D 83.333 354 40 11 2637 2986 429501111 429501449 3.450000e-80 309.0
14 TraesCS5B01G114200 chr2D 83.224 304 49 2 3029 3330 429501437 429501740 9.730000e-71 278.0
15 TraesCS5B01G114200 chr2D 93.860 114 5 1 1114 1225 630470940 630470827 1.700000e-38 171.0
16 TraesCS5B01G114200 chr2D 98.795 83 0 1 3476 3557 630468945 630468863 2.860000e-31 147.0
17 TraesCS5B01G114200 chr7B 96.205 896 25 6 2 894 586572953 586573842 0.000000e+00 1458.0
18 TraesCS5B01G114200 chr7B 88.290 538 51 8 3029 3557 581399824 581400358 5.010000e-178 634.0
19 TraesCS5B01G114200 chr7B 85.689 566 60 7 2256 2811 581399145 581399699 8.560000e-161 577.0
20 TraesCS5B01G114200 chr7B 85.155 485 53 8 1615 2091 581398533 581399006 2.480000e-131 479.0
21 TraesCS5B01G114200 chr7B 82.880 368 48 9 2626 2983 575441774 575442136 2.060000e-82 316.0
22 TraesCS5B01G114200 chr4B 95.541 897 27 8 2 894 1074916 1075803 0.000000e+00 1423.0
23 TraesCS5B01G114200 chr4B 83.520 358 48 5 2637 2986 620097134 620096780 1.230000e-84 324.0
24 TraesCS5B01G114200 chr4B 82.713 376 51 9 2622 2986 145964684 145964312 4.430000e-84 322.0
25 TraesCS5B01G114200 chr3B 95.531 895 24 8 2 894 741700624 741701504 0.000000e+00 1417.0
26 TraesCS5B01G114200 chr3B 94.906 903 36 8 2 895 646225822 646226723 0.000000e+00 1404.0
27 TraesCS5B01G114200 chr3B 82.713 376 51 9 2622 2986 438574529 438574901 4.430000e-84 322.0
28 TraesCS5B01G114200 chr3B 83.333 360 47 7 2637 2986 492108475 492108119 1.590000e-83 320.0
29 TraesCS5B01G114200 chr6B 94.978 896 36 6 2 895 460379378 460378490 0.000000e+00 1397.0
30 TraesCS5B01G114200 chr7D 91.806 720 54 3 1674 2389 141466166 141465448 0.000000e+00 998.0
31 TraesCS5B01G114200 chr7D 86.106 547 29 16 2845 3385 141465431 141464926 2.410000e-151 545.0
32 TraesCS5B01G114200 chr5A 88.848 538 49 6 3029 3557 644925705 644926240 0.000000e+00 651.0
33 TraesCS5B01G114200 chr5A 88.290 538 52 7 3029 3557 400507516 400506981 5.010000e-178 634.0
34 TraesCS5B01G114200 chr5A 85.968 563 58 7 2259 2811 400508192 400507641 1.840000e-162 582.0
35 TraesCS5B01G114200 chr5A 85.866 566 58 8 2256 2811 644925026 644925579 1.840000e-162 582.0
36 TraesCS5B01G114200 chr5A 84.221 526 54 10 1618 2135 400508804 400508300 5.340000e-133 484.0
37 TraesCS5B01G114200 chr5A 84.173 417 48 7 1654 2062 644924521 644924927 4.310000e-104 388.0
38 TraesCS5B01G114200 chr5A 82.353 374 50 9 2626 2986 280766732 280767102 9.590000e-81 311.0
39 TraesCS5B01G114200 chr5A 83.578 341 42 11 888 1223 644923829 644924160 1.240000e-79 307.0
40 TraesCS5B01G114200 chr5A 87.162 148 10 4 2841 2988 400507640 400507502 3.680000e-35 159.0
41 TraesCS5B01G114200 chr5A 86.486 148 12 4 2841 2988 644925580 644925719 4.750000e-34 156.0
42 TraesCS5B01G114200 chr7A 88.476 538 51 7 3029 3557 588283193 588283728 1.080000e-179 640.0
43 TraesCS5B01G114200 chr7A 86.042 566 58 7 2256 2811 588282514 588283068 3.960000e-164 588.0
44 TraesCS5B01G114200 chr7A 85.567 485 51 8 1615 2091 588281902 588282375 1.150000e-134 490.0
45 TraesCS5B01G114200 chr7A 83.149 362 46 7 2637 2986 2543645 2544003 2.060000e-82 316.0
46 TraesCS5B01G114200 chr7A 82.873 362 47 7 2637 2986 67566324 67566682 9.590000e-81 311.0
47 TraesCS5B01G114200 chr7A 87.162 148 10 4 2841 2988 588283069 588283207 3.680000e-35 159.0
48 TraesCS5B01G114200 chr2A 84.280 528 73 10 3029 3546 753818462 753818989 1.140000e-139 507.0
49 TraesCS5B01G114200 chr2A 85.714 133 13 4 2853 2984 753818345 753818472 6.190000e-28 135.0
50 TraesCS5B01G114200 chr3A 83.799 537 77 10 3029 3557 141554528 141555062 5.300000e-138 501.0
51 TraesCS5B01G114200 chr3A 83.333 372 48 6 2626 2986 141554172 141554540 7.360000e-87 331.0
52 TraesCS5B01G114200 chr6D 82.222 540 71 16 3029 3557 331242236 331242761 3.260000e-120 442.0
53 TraesCS5B01G114200 chr6D 84.066 364 50 4 2626 2986 331241890 331242248 9.450000e-91 344.0
54 TraesCS5B01G114200 chr1B 84.320 338 44 6 894 1225 206426758 206426424 4.430000e-84 322.0
55 TraesCS5B01G114200 chr1B 82.192 73 13 0 1348 1420 545072301 545072373 2.960000e-06 63.9
56 TraesCS5B01G114200 chr1A 82.920 363 46 7 2637 2986 502834204 502833845 2.670000e-81 313.0
57 TraesCS5B01G114200 chr1A 81.948 349 41 11 2637 2983 362622073 362622401 3.500000e-70 276.0
58 TraesCS5B01G114200 chr1A 74.654 434 79 14 1618 2044 82664366 82664775 2.840000e-36 163.0
59 TraesCS5B01G114200 chr1D 96.875 32 1 0 1348 1379 405164295 405164326 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G114200 chr5B 185181621 185185177 3556 True 6569.000000 6569 100.000000 1 3557 1 chr5B.!!$R1 3556
1 TraesCS5B01G114200 chr5B 456330389 456331287 898 False 1404.000000 1404 94.835000 2 905 1 chr5B.!!$F2 903
2 TraesCS5B01G114200 chr5B 614991265 614992159 894 True 1399.000000 1399 94.895000 2 897 1 chr5B.!!$R4 895
3 TraesCS5B01G114200 chr5B 636445095 636445985 890 False 1399.000000 1399 94.983000 2 894 1 chr5B.!!$F3 892
4 TraesCS5B01G114200 chr5B 231008064 231008964 900 True 1380.000000 1380 94.279000 2 907 1 chr5B.!!$R2 905
5 TraesCS5B01G114200 chr5B 17934607 17936540 1933 False 547.000000 839 85.495667 1620 3557 3 chr5B.!!$F4 1937
6 TraesCS5B01G114200 chr2D 630468863 630471204 2341 True 632.800000 2165 92.530000 894 3557 5 chr2D.!!$R1 2663
7 TraesCS5B01G114200 chr2D 429501111 429501740 629 False 293.500000 309 83.278500 2637 3330 2 chr2D.!!$F1 693
8 TraesCS5B01G114200 chr7B 586572953 586573842 889 False 1458.000000 1458 96.205000 2 894 1 chr7B.!!$F2 892
9 TraesCS5B01G114200 chr7B 581398533 581400358 1825 False 563.333333 634 86.378000 1615 3557 3 chr7B.!!$F3 1942
10 TraesCS5B01G114200 chr4B 1074916 1075803 887 False 1423.000000 1423 95.541000 2 894 1 chr4B.!!$F1 892
11 TraesCS5B01G114200 chr3B 741700624 741701504 880 False 1417.000000 1417 95.531000 2 894 1 chr3B.!!$F3 892
12 TraesCS5B01G114200 chr3B 646225822 646226723 901 False 1404.000000 1404 94.906000 2 895 1 chr3B.!!$F2 893
13 TraesCS5B01G114200 chr6B 460378490 460379378 888 True 1397.000000 1397 94.978000 2 895 1 chr6B.!!$R1 893
14 TraesCS5B01G114200 chr7D 141464926 141466166 1240 True 771.500000 998 88.956000 1674 3385 2 chr7D.!!$R1 1711
15 TraesCS5B01G114200 chr5A 400506981 400508804 1823 True 464.750000 634 86.410250 1618 3557 4 chr5A.!!$R1 1939
16 TraesCS5B01G114200 chr5A 644923829 644926240 2411 False 416.800000 651 85.790200 888 3557 5 chr5A.!!$F2 2669
17 TraesCS5B01G114200 chr7A 588281902 588283728 1826 False 469.250000 640 86.811750 1615 3557 4 chr7A.!!$F3 1942
18 TraesCS5B01G114200 chr2A 753818345 753818989 644 False 321.000000 507 84.997000 2853 3546 2 chr2A.!!$F1 693
19 TraesCS5B01G114200 chr3A 141554172 141555062 890 False 416.000000 501 83.566000 2626 3557 2 chr3A.!!$F1 931
20 TraesCS5B01G114200 chr6D 331241890 331242761 871 False 393.000000 442 83.144000 2626 3557 2 chr6D.!!$F1 931

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 834 0.107703 AGAGTGTGTGTGTGTGTGGG 60.108 55.0 0.0 0.0 0.00 4.61 F
1601 1701 0.380378 TGCGTCAAACAAGCAACTCC 59.620 50.0 0.0 0.0 38.01 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2291 0.032952 AACCTGCGAGTAACAGCGAA 59.967 50.0 0.0 0.0 35.87 4.70 R
2659 2930 1.412079 CTCCTCCTCAGTCCATCAGG 58.588 60.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.214216 CGGGGACTGAACCACTGGA 61.214 63.158 0.71 0.00 36.31 3.86
246 251 2.229543 ACAATGCACACAATTCGAGCAT 59.770 40.909 0.63 0.63 46.86 3.79
339 344 8.983702 TTGGTTATTTTAACTACTGTTGGACT 57.016 30.769 0.00 0.00 37.59 3.85
563 568 3.051341 ACATCATTAGGGGGAGGTCACTA 60.051 47.826 0.00 0.00 0.00 2.74
577 582 6.042208 GGGAGGTCACTATAGCTAATGACTTT 59.958 42.308 24.19 17.21 41.03 2.66
691 697 5.914635 CACAAGTCCACACATTATTGTCAAC 59.085 40.000 0.00 0.00 32.34 3.18
725 731 1.119574 TGGCGGGGAGAATAGGCTAC 61.120 60.000 0.00 0.00 0.00 3.58
749 759 3.068165 TGTGTGTGTGTGTTAGAGAGAGG 59.932 47.826 0.00 0.00 0.00 3.69
794 829 1.696097 GGGGGAGAGTGTGTGTGTGT 61.696 60.000 0.00 0.00 0.00 3.72
795 830 0.532862 GGGGAGAGTGTGTGTGTGTG 60.533 60.000 0.00 0.00 0.00 3.82
796 831 0.178068 GGGAGAGTGTGTGTGTGTGT 59.822 55.000 0.00 0.00 0.00 3.72
797 832 1.290203 GGAGAGTGTGTGTGTGTGTG 58.710 55.000 0.00 0.00 0.00 3.82
798 833 1.290203 GAGAGTGTGTGTGTGTGTGG 58.710 55.000 0.00 0.00 0.00 4.17
799 834 0.107703 AGAGTGTGTGTGTGTGTGGG 60.108 55.000 0.00 0.00 0.00 4.61
800 835 1.077787 AGTGTGTGTGTGTGTGGGG 60.078 57.895 0.00 0.00 0.00 4.96
801 836 2.118404 GTGTGTGTGTGTGTGGGGG 61.118 63.158 0.00 0.00 0.00 5.40
1028 1064 3.073678 CAATCCCGAGTCAAATGTGTGA 58.926 45.455 0.00 0.00 0.00 3.58
1040 1076 9.793252 GAGTCAAATGTGTGATTAGCAATTTAT 57.207 29.630 0.00 0.00 0.00 1.40
1057 1093 6.747280 GCAATTTATAATGACTGAACGCACTT 59.253 34.615 0.00 0.00 0.00 3.16
1126 1206 1.412710 TCACGCTAATCCCTCCATGTC 59.587 52.381 0.00 0.00 0.00 3.06
1162 1242 3.356290 CAAAAATCCCTACCACTCCCAG 58.644 50.000 0.00 0.00 0.00 4.45
1163 1243 1.596496 AAATCCCTACCACTCCCAGG 58.404 55.000 0.00 0.00 0.00 4.45
1164 1244 0.722676 AATCCCTACCACTCCCAGGA 59.277 55.000 0.00 0.00 0.00 3.86
1200 1283 0.528924 TACGGAGTCATCACCAACCG 59.471 55.000 0.00 0.00 43.93 4.44
1216 1299 3.591835 CGCTCCTCCGCCTCTCTC 61.592 72.222 0.00 0.00 0.00 3.20
1217 1300 2.123897 GCTCCTCCGCCTCTCTCT 60.124 66.667 0.00 0.00 0.00 3.10
1218 1301 2.193536 GCTCCTCCGCCTCTCTCTC 61.194 68.421 0.00 0.00 0.00 3.20
1219 1302 1.531748 CTCCTCCGCCTCTCTCTCT 59.468 63.158 0.00 0.00 0.00 3.10
1220 1303 0.535102 CTCCTCCGCCTCTCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
1221 1304 0.986019 TCCTCCGCCTCTCTCTCTCT 60.986 60.000 0.00 0.00 0.00 3.10
1222 1305 0.535102 CCTCCGCCTCTCTCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
1223 1306 0.469917 CTCCGCCTCTCTCTCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
1224 1307 0.468226 TCCGCCTCTCTCTCTCTCTC 59.532 60.000 0.00 0.00 0.00 3.20
1225 1308 0.469917 CCGCCTCTCTCTCTCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
1226 1309 1.541233 CCGCCTCTCTCTCTCTCTCTC 60.541 61.905 0.00 0.00 0.00 3.20
1227 1310 1.414181 CGCCTCTCTCTCTCTCTCTCT 59.586 57.143 0.00 0.00 0.00 3.10
1228 1311 2.546795 CGCCTCTCTCTCTCTCTCTCTC 60.547 59.091 0.00 0.00 0.00 3.20
1229 1312 2.703007 GCCTCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 0.00 3.10
1230 1313 3.244044 GCCTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
1231 1314 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
1232 1315 5.389520 CCTCTCTCTCTCTCTCTCTCTCTA 58.610 50.000 0.00 0.00 0.00 2.43
1233 1316 6.015918 CCTCTCTCTCTCTCTCTCTCTCTAT 58.984 48.000 0.00 0.00 0.00 1.98
1234 1317 6.152661 CCTCTCTCTCTCTCTCTCTCTCTATC 59.847 50.000 0.00 0.00 0.00 2.08
1235 1318 6.857848 TCTCTCTCTCTCTCTCTCTCTATCT 58.142 44.000 0.00 0.00 0.00 1.98
1236 1319 7.990055 TCTCTCTCTCTCTCTCTCTCTATCTA 58.010 42.308 0.00 0.00 0.00 1.98
1237 1320 8.106462 TCTCTCTCTCTCTCTCTCTCTATCTAG 58.894 44.444 0.00 0.00 0.00 2.43
1238 1321 6.661377 TCTCTCTCTCTCTCTCTCTATCTAGC 59.339 46.154 0.00 0.00 0.00 3.42
1239 1322 6.556639 TCTCTCTCTCTCTCTCTATCTAGCT 58.443 44.000 0.00 0.00 0.00 3.32
1240 1323 7.699878 TCTCTCTCTCTCTCTCTATCTAGCTA 58.300 42.308 0.00 0.00 0.00 3.32
1241 1324 8.340002 TCTCTCTCTCTCTCTCTATCTAGCTAT 58.660 40.741 0.00 0.00 0.00 2.97
1242 1325 8.526667 TCTCTCTCTCTCTCTATCTAGCTATC 57.473 42.308 0.00 0.00 0.00 2.08
1243 1326 8.340002 TCTCTCTCTCTCTCTATCTAGCTATCT 58.660 40.741 0.00 0.00 0.00 1.98
1244 1327 8.526667 TCTCTCTCTCTCTATCTAGCTATCTC 57.473 42.308 0.00 0.00 0.00 2.75
1245 1328 8.340002 TCTCTCTCTCTCTATCTAGCTATCTCT 58.660 40.741 0.00 0.00 0.00 3.10
1246 1329 8.526667 TCTCTCTCTCTATCTAGCTATCTCTC 57.473 42.308 0.00 0.00 0.00 3.20
1247 1330 8.340002 TCTCTCTCTCTATCTAGCTATCTCTCT 58.660 40.741 0.00 0.00 0.00 3.10
1248 1331 9.634021 CTCTCTCTCTATCTAGCTATCTCTCTA 57.366 40.741 0.00 0.00 0.00 2.43
1269 1352 0.754957 CTCTCTCTCTCCACGCCCAT 60.755 60.000 0.00 0.00 0.00 4.00
1271 1354 1.305297 TCTCTCTCCACGCCCATGT 60.305 57.895 0.00 0.00 0.00 3.21
1304 1387 1.620819 CCTGGATCGGAGGAATCGAAT 59.379 52.381 3.73 0.00 40.15 3.34
1315 1398 0.872021 GAATCGAATGTCGCCGCTCT 60.872 55.000 0.00 0.00 40.21 4.09
1326 1409 2.042831 GCCGCTCTGCCATGTTTCT 61.043 57.895 0.00 0.00 0.00 2.52
1333 1416 3.152341 CTCTGCCATGTTTCTTTCAGGT 58.848 45.455 0.00 0.00 0.00 4.00
1337 1420 1.962807 CCATGTTTCTTTCAGGTGCCA 59.037 47.619 0.00 0.00 0.00 4.92
1379 1474 2.743928 GCCAACAGAGGTGAGCCG 60.744 66.667 0.00 0.00 40.50 5.52
1416 1511 3.315470 CGTCGAATCTATCTTCCTCACCA 59.685 47.826 0.00 0.00 0.00 4.17
1420 1515 2.145397 TCTATCTTCCTCACCACGCT 57.855 50.000 0.00 0.00 0.00 5.07
1467 1562 2.324330 CGATTTGGTCACGCCTGCA 61.324 57.895 0.00 0.00 38.35 4.41
1486 1583 1.446272 CCGTCGGGTTTCTCTCTGC 60.446 63.158 2.34 0.00 0.00 4.26
1492 1589 1.543429 CGGGTTTCTCTCTGCCTGTTT 60.543 52.381 0.00 0.00 0.00 2.83
1520 1620 9.218525 TCATAAGACTCTAATTTCCCAAGATCT 57.781 33.333 0.00 0.00 0.00 2.75
1534 1634 9.973661 TTTCCCAAGATCTGATTTTTATCTACA 57.026 29.630 0.00 0.00 29.89 2.74
1561 1661 1.492176 ACCAGGGAAATCTGATGCGAT 59.508 47.619 0.00 0.00 36.93 4.58
1562 1662 2.092212 ACCAGGGAAATCTGATGCGATT 60.092 45.455 0.00 0.00 36.93 3.34
1565 1665 3.628942 CAGGGAAATCTGATGCGATTGAA 59.371 43.478 0.00 0.00 36.93 2.69
1569 1669 5.461078 GGGAAATCTGATGCGATTGAATTTG 59.539 40.000 0.00 0.00 34.07 2.32
1575 1675 2.077413 TGCGATTGAATTTGTTGCCC 57.923 45.000 0.00 0.00 0.00 5.36
1581 1681 4.493547 GATTGAATTTGTTGCCCGATTCA 58.506 39.130 0.00 0.00 36.89 2.57
1586 1686 1.240641 TTGTTGCCCGATTCATGCGT 61.241 50.000 0.00 0.00 0.00 5.24
1587 1687 1.062525 GTTGCCCGATTCATGCGTC 59.937 57.895 0.00 0.00 0.00 5.19
1588 1688 1.376553 TTGCCCGATTCATGCGTCA 60.377 52.632 0.00 0.00 0.00 4.35
1589 1689 0.957888 TTGCCCGATTCATGCGTCAA 60.958 50.000 0.00 0.00 0.00 3.18
1590 1690 0.957888 TGCCCGATTCATGCGTCAAA 60.958 50.000 0.00 0.00 0.00 2.69
1591 1691 0.523335 GCCCGATTCATGCGTCAAAC 60.523 55.000 0.00 0.00 0.00 2.93
1592 1692 0.801872 CCCGATTCATGCGTCAAACA 59.198 50.000 0.00 0.00 0.00 2.83
1593 1693 1.198867 CCCGATTCATGCGTCAAACAA 59.801 47.619 0.00 0.00 0.00 2.83
1594 1694 2.508867 CCGATTCATGCGTCAAACAAG 58.491 47.619 0.00 0.00 0.00 3.16
1595 1695 1.906966 CGATTCATGCGTCAAACAAGC 59.093 47.619 0.00 0.00 0.00 4.01
1596 1696 2.665245 CGATTCATGCGTCAAACAAGCA 60.665 45.455 0.00 0.00 45.46 3.91
1597 1697 2.859526 TTCATGCGTCAAACAAGCAA 57.140 40.000 0.00 0.00 44.51 3.91
1598 1698 2.118228 TCATGCGTCAAACAAGCAAC 57.882 45.000 0.00 0.00 44.51 4.17
1599 1699 1.675483 TCATGCGTCAAACAAGCAACT 59.325 42.857 0.00 0.00 44.51 3.16
1600 1700 2.046313 CATGCGTCAAACAAGCAACTC 58.954 47.619 0.00 0.00 44.51 3.01
1601 1701 0.380378 TGCGTCAAACAAGCAACTCC 59.620 50.000 0.00 0.00 38.01 3.85
1602 1702 0.663153 GCGTCAAACAAGCAACTCCT 59.337 50.000 0.00 0.00 0.00 3.69
1603 1703 1.065551 GCGTCAAACAAGCAACTCCTT 59.934 47.619 0.00 0.00 0.00 3.36
1604 1704 2.719798 CGTCAAACAAGCAACTCCTTG 58.280 47.619 0.72 0.72 45.90 3.61
1605 1705 2.354510 CGTCAAACAAGCAACTCCTTGA 59.645 45.455 8.71 0.00 43.79 3.02
1606 1706 3.003689 CGTCAAACAAGCAACTCCTTGAT 59.996 43.478 8.71 0.00 43.79 2.57
1607 1707 4.293415 GTCAAACAAGCAACTCCTTGATG 58.707 43.478 8.71 7.29 43.79 3.07
1608 1708 3.953612 TCAAACAAGCAACTCCTTGATGT 59.046 39.130 8.71 0.00 43.79 3.06
1609 1709 4.402155 TCAAACAAGCAACTCCTTGATGTT 59.598 37.500 8.71 0.00 43.79 2.71
1610 1710 5.105392 TCAAACAAGCAACTCCTTGATGTTT 60.105 36.000 8.71 9.90 43.04 2.83
1611 1711 6.096141 TCAAACAAGCAACTCCTTGATGTTTA 59.904 34.615 8.71 5.11 41.81 2.01
1612 1712 6.463995 AACAAGCAACTCCTTGATGTTTAA 57.536 33.333 8.71 0.00 43.79 1.52
1613 1713 6.655078 ACAAGCAACTCCTTGATGTTTAAT 57.345 33.333 8.71 0.00 43.79 1.40
1616 1716 5.942872 AGCAACTCCTTGATGTTTAATTCG 58.057 37.500 0.00 0.00 0.00 3.34
1640 1740 6.463995 AACAAGCAACTCCTTGATGTTTAA 57.536 33.333 8.71 0.00 43.79 1.52
1671 1771 8.793592 GTTTCTCTTTGGTGATATTTAGGTGTT 58.206 33.333 0.00 0.00 0.00 3.32
1743 1843 1.094785 GTGCGGTAGGAAACATGCAT 58.905 50.000 0.00 0.00 41.31 3.96
1880 1994 4.873746 TTCTTCGTCCTGAACTGAATCT 57.126 40.909 0.00 0.00 31.87 2.40
1899 2013 1.437089 CGTCTTGTTCGCTGCAACG 60.437 57.895 2.36 2.36 0.00 4.10
2016 2136 2.320745 GTACGGATACCACCCCTTTG 57.679 55.000 0.00 0.00 0.00 2.77
2045 2165 5.418524 TGCATGCCTTCTAAAGCAATTTCTA 59.581 36.000 16.68 0.00 43.36 2.10
2083 2203 2.799017 TGCTCTGGTGATTTGCAGAAT 58.201 42.857 0.00 0.00 0.00 2.40
2137 2290 4.299796 GGCAACCCTGAAGCCCCA 62.300 66.667 0.00 0.00 42.58 4.96
2138 2291 2.037847 GCAACCCTGAAGCCCCAT 59.962 61.111 0.00 0.00 0.00 4.00
2157 2310 0.032952 TTCGCTGTTACTCGCAGGTT 59.967 50.000 0.00 0.00 34.73 3.50
2167 2320 0.957395 CTCGCAGGTTGATTGGCACT 60.957 55.000 0.00 0.00 0.00 4.40
2237 2393 7.946207 TCTTTTTGTACACAAATGAGGCAATA 58.054 30.769 7.60 0.00 44.30 1.90
2252 2408 2.287188 GGCAATACAGTTGGCATCGATG 60.287 50.000 21.27 21.27 43.47 3.84
2268 2424 2.303549 GATGGCTGCTACTCGCTGGT 62.304 60.000 0.00 0.00 40.11 4.00
2277 2433 2.096248 CTACTCGCTGGTCTCTCCTTT 58.904 52.381 0.00 0.00 37.07 3.11
2281 2437 0.532573 CGCTGGTCTCTCCTTTAGCA 59.467 55.000 0.00 0.00 33.86 3.49
2288 2444 3.514309 GGTCTCTCCTTTAGCACAGGTTA 59.486 47.826 0.00 0.00 32.59 2.85
2340 2496 2.440065 GCCCCATGGACGCATTCA 60.440 61.111 15.22 0.00 0.00 2.57
2360 2516 2.119832 ACACCCCTACAGCCGACT 59.880 61.111 0.00 0.00 0.00 4.18
2371 2527 3.394836 GCCGACTCTCCTGCCCTT 61.395 66.667 0.00 0.00 0.00 3.95
2479 2637 9.661563 CATGCAGGGAAATTAATTATATGCATT 57.338 29.630 25.17 15.67 46.50 3.56
2509 2667 1.209504 GTTGCCTGATGCCCACTACTA 59.790 52.381 0.00 0.00 40.16 1.82
2510 2668 1.806496 TGCCTGATGCCCACTACTAT 58.194 50.000 0.00 0.00 40.16 2.12
2635 2906 7.944554 ACAGGTATGTGCCTTGCTTATAAATAT 59.055 33.333 0.00 0.00 38.57 1.28
2659 2930 5.958955 AGCCTTGCATGATTTTCTCTTTAC 58.041 37.500 0.00 0.00 0.00 2.01
2811 3083 5.165961 TGGCTAGCTGTTTTCTTGTCTAT 57.834 39.130 15.72 0.00 0.00 1.98
2817 3089 7.010645 GCTAGCTGTTTTCTTGTCTATAACTCC 59.989 40.741 7.70 0.00 0.00 3.85
2847 3119 5.808366 AACAACTTCTCTCACCATGTCTA 57.192 39.130 0.00 0.00 0.00 2.59
2943 3230 0.250252 TGCACAATGGTTGAGCTCGA 60.250 50.000 9.64 3.88 45.66 4.04
3115 3410 4.088634 TGAGGCCTACATTTTTGCTCATT 58.911 39.130 4.42 0.00 0.00 2.57
3158 3457 4.088634 ACTCTGGCAATCCAAAATAGCAA 58.911 39.130 0.00 0.00 42.91 3.91
3264 3569 6.324770 AGCAATTTAAGCTTATATGGGTGCTT 59.675 34.615 20.08 10.65 45.94 3.91
3266 3571 7.495606 GCAATTTAAGCTTATATGGGTGCTTTT 59.504 33.333 17.67 0.00 42.22 2.27
3420 3728 0.594796 CTTCAACAACGTGCTTGCCC 60.595 55.000 0.00 0.00 32.41 5.36
3478 3792 3.431415 AGGAAACCCCTTCAACTTATGC 58.569 45.455 0.00 0.00 44.85 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.332543 TCCTGTTCCCCGAGCCCT 62.333 66.667 0.00 0.00 0.00 5.19
227 232 4.700268 TTATGCTCGAATTGTGTGCATT 57.300 36.364 17.08 6.74 43.09 3.56
498 503 3.989817 GCCAAACTGCCACTTGATAAAAG 59.010 43.478 0.00 0.00 0.00 2.27
541 546 2.127708 GTGACCTCCCCCTAATGATGT 58.872 52.381 0.00 0.00 0.00 3.06
577 582 8.778059 AGAAATGGGAAGATTATGTAACACCTA 58.222 33.333 0.00 0.00 0.00 3.08
691 697 3.458189 CCCGCCAATAAGACTTACTCAG 58.542 50.000 0.00 0.00 0.00 3.35
725 731 2.789339 CTCTCTAACACACACACACACG 59.211 50.000 0.00 0.00 0.00 4.49
749 759 0.336737 TTCCTCACTCTCTCTCCCCC 59.663 60.000 0.00 0.00 0.00 5.40
1007 1043 3.073678 TCACACATTTGACTCGGGATTG 58.926 45.455 0.00 0.00 0.00 2.67
1028 1064 8.620416 TGCGTTCAGTCATTATAAATTGCTAAT 58.380 29.630 0.00 0.00 0.00 1.73
1040 1076 3.064207 GGTGAAGTGCGTTCAGTCATTA 58.936 45.455 1.68 0.00 46.18 1.90
1126 1206 4.405680 GGATTTTTGGTAGGGGAGGAATTG 59.594 45.833 0.00 0.00 0.00 2.32
1200 1283 2.123897 AGAGAGAGGCGGAGGAGC 60.124 66.667 0.00 0.00 0.00 4.70
1210 1293 6.947733 AGATAGAGAGAGAGAGAGAGAGAGAG 59.052 46.154 0.00 0.00 0.00 3.20
1215 1298 6.556639 AGCTAGATAGAGAGAGAGAGAGAGA 58.443 44.000 0.00 0.00 0.00 3.10
1216 1299 6.849085 AGCTAGATAGAGAGAGAGAGAGAG 57.151 45.833 0.00 0.00 0.00 3.20
1217 1300 8.340002 AGATAGCTAGATAGAGAGAGAGAGAGA 58.660 40.741 0.00 0.00 0.00 3.10
1218 1301 8.532186 AGATAGCTAGATAGAGAGAGAGAGAG 57.468 42.308 0.00 0.00 0.00 3.20
1219 1302 8.340002 AGAGATAGCTAGATAGAGAGAGAGAGA 58.660 40.741 0.00 0.00 0.00 3.10
1220 1303 8.532186 AGAGATAGCTAGATAGAGAGAGAGAG 57.468 42.308 0.00 0.00 0.00 3.20
1221 1304 8.340002 AGAGAGATAGCTAGATAGAGAGAGAGA 58.660 40.741 0.00 0.00 0.00 3.10
1222 1305 8.532186 AGAGAGATAGCTAGATAGAGAGAGAG 57.468 42.308 0.00 0.00 0.00 3.20
1232 1315 9.142014 GAGAGAGAGATAGAGAGATAGCTAGAT 57.858 40.741 0.00 0.00 0.00 1.98
1233 1316 8.340002 AGAGAGAGAGATAGAGAGATAGCTAGA 58.660 40.741 0.00 0.00 0.00 2.43
1234 1317 8.532186 AGAGAGAGAGATAGAGAGATAGCTAG 57.468 42.308 0.00 0.00 0.00 3.42
1235 1318 7.561722 GGAGAGAGAGAGATAGAGAGATAGCTA 59.438 44.444 0.00 0.00 0.00 3.32
1236 1319 6.382570 GGAGAGAGAGAGATAGAGAGATAGCT 59.617 46.154 0.00 0.00 0.00 3.32
1237 1320 6.155221 TGGAGAGAGAGAGATAGAGAGATAGC 59.845 46.154 0.00 0.00 0.00 2.97
1238 1321 7.551585 GTGGAGAGAGAGAGATAGAGAGATAG 58.448 46.154 0.00 0.00 0.00 2.08
1239 1322 6.152831 CGTGGAGAGAGAGAGATAGAGAGATA 59.847 46.154 0.00 0.00 0.00 1.98
1240 1323 5.047021 CGTGGAGAGAGAGAGATAGAGAGAT 60.047 48.000 0.00 0.00 0.00 2.75
1241 1324 4.280929 CGTGGAGAGAGAGAGATAGAGAGA 59.719 50.000 0.00 0.00 0.00 3.10
1242 1325 4.560128 CGTGGAGAGAGAGAGATAGAGAG 58.440 52.174 0.00 0.00 0.00 3.20
1243 1326 3.244078 GCGTGGAGAGAGAGAGATAGAGA 60.244 52.174 0.00 0.00 0.00 3.10
1244 1327 3.067106 GCGTGGAGAGAGAGAGATAGAG 58.933 54.545 0.00 0.00 0.00 2.43
1245 1328 2.224426 GGCGTGGAGAGAGAGAGATAGA 60.224 54.545 0.00 0.00 0.00 1.98
1246 1329 2.151202 GGCGTGGAGAGAGAGAGATAG 58.849 57.143 0.00 0.00 0.00 2.08
1247 1330 1.202830 GGGCGTGGAGAGAGAGAGATA 60.203 57.143 0.00 0.00 0.00 1.98
1248 1331 0.467290 GGGCGTGGAGAGAGAGAGAT 60.467 60.000 0.00 0.00 0.00 2.75
1249 1332 1.077357 GGGCGTGGAGAGAGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
1277 1360 1.443407 CTCCGATCCAGGACGCATT 59.557 57.895 0.00 0.00 36.14 3.56
1282 1365 0.315568 CGATTCCTCCGATCCAGGAC 59.684 60.000 7.46 0.00 39.95 3.85
1291 1374 1.215655 GGCGACATTCGATTCCTCCG 61.216 60.000 0.00 0.00 43.74 4.63
1315 1398 1.340889 GCACCTGAAAGAAACATGGCA 59.659 47.619 0.00 0.00 34.07 4.92
1326 1409 2.093764 CCTGTTGTTTTGGCACCTGAAA 60.094 45.455 0.00 0.00 0.00 2.69
1333 1416 2.105930 GCGCCTGTTGTTTTGGCA 59.894 55.556 0.00 0.00 46.39 4.92
1337 1420 3.483235 CTGCGGCGCCTGTTGTTTT 62.483 57.895 30.82 0.00 0.00 2.43
1379 1474 4.807039 ACGGGTACGCGGATGTGC 62.807 66.667 31.94 0.00 46.04 4.57
1389 1484 3.819902 AGGAAGATAGATTCGACGGGTAC 59.180 47.826 0.00 0.00 0.00 3.34
1470 1565 0.390472 CAGGCAGAGAGAAACCCGAC 60.390 60.000 0.00 0.00 0.00 4.79
1472 1567 0.035458 AACAGGCAGAGAGAAACCCG 59.965 55.000 0.00 0.00 0.00 5.28
1484 1581 8.635765 AATTAGAGTCTTATGAAAAACAGGCA 57.364 30.769 0.00 0.00 0.00 4.75
1520 1620 9.573166 CCTGGTTGGATATGTAGATAAAAATCA 57.427 33.333 0.00 0.00 38.35 2.57
1534 1634 5.638133 CATCAGATTTCCCTGGTTGGATAT 58.362 41.667 0.00 0.00 38.35 1.63
1561 1661 4.244066 CATGAATCGGGCAACAAATTCAA 58.756 39.130 0.00 0.00 45.91 2.69
1562 1662 3.847542 CATGAATCGGGCAACAAATTCA 58.152 40.909 0.00 0.00 46.44 2.57
1565 1665 1.469595 CGCATGAATCGGGCAACAAAT 60.470 47.619 0.00 0.00 39.74 2.32
1569 1669 1.062525 GACGCATGAATCGGGCAAC 59.937 57.895 0.00 0.00 0.00 4.17
1575 1675 1.906966 GCTTGTTTGACGCATGAATCG 59.093 47.619 0.00 0.00 0.00 3.34
1581 1681 1.001378 GGAGTTGCTTGTTTGACGCAT 60.001 47.619 0.00 0.00 33.15 4.73
1586 1686 3.953612 ACATCAAGGAGTTGCTTGTTTGA 59.046 39.130 18.07 2.14 33.23 2.69
1587 1687 4.311816 ACATCAAGGAGTTGCTTGTTTG 57.688 40.909 12.21 12.77 33.23 2.93
1588 1688 5.343307 AAACATCAAGGAGTTGCTTGTTT 57.657 34.783 12.21 5.06 40.78 2.83
1589 1689 6.463995 TTAAACATCAAGGAGTTGCTTGTT 57.536 33.333 12.21 2.76 39.46 2.83
1590 1690 6.655078 ATTAAACATCAAGGAGTTGCTTGT 57.345 33.333 12.21 0.00 33.59 3.16
1591 1691 6.306356 CGAATTAAACATCAAGGAGTTGCTTG 59.694 38.462 7.01 7.01 33.23 4.01
1592 1692 6.206634 TCGAATTAAACATCAAGGAGTTGCTT 59.793 34.615 0.00 0.00 33.23 3.91
1593 1693 5.705441 TCGAATTAAACATCAAGGAGTTGCT 59.295 36.000 0.00 0.00 33.23 3.91
1594 1694 5.938322 TCGAATTAAACATCAAGGAGTTGC 58.062 37.500 0.00 0.00 33.23 4.17
1595 1695 7.359595 TGTTCGAATTAAACATCAAGGAGTTG 58.640 34.615 0.00 0.00 31.90 3.16
1596 1696 7.504924 TGTTCGAATTAAACATCAAGGAGTT 57.495 32.000 0.00 0.00 31.90 3.01
1597 1697 7.504924 TTGTTCGAATTAAACATCAAGGAGT 57.495 32.000 0.00 0.00 36.57 3.85
1598 1698 6.524586 GCTTGTTCGAATTAAACATCAAGGAG 59.475 38.462 17.36 1.65 36.57 3.69
1599 1699 6.016693 TGCTTGTTCGAATTAAACATCAAGGA 60.017 34.615 17.36 13.80 36.57 3.36
1600 1700 6.148948 TGCTTGTTCGAATTAAACATCAAGG 58.851 36.000 17.36 5.22 36.57 3.61
1601 1701 7.379529 AGTTGCTTGTTCGAATTAAACATCAAG 59.620 33.333 13.53 13.53 36.57 3.02
1602 1702 7.199766 AGTTGCTTGTTCGAATTAAACATCAA 58.800 30.769 0.00 10.09 36.57 2.57
1603 1703 6.734137 AGTTGCTTGTTCGAATTAAACATCA 58.266 32.000 0.00 5.94 36.57 3.07
1604 1704 6.305638 GGAGTTGCTTGTTCGAATTAAACATC 59.694 38.462 0.00 1.99 36.57 3.06
1605 1705 6.016276 AGGAGTTGCTTGTTCGAATTAAACAT 60.016 34.615 0.00 0.00 36.57 2.71
1606 1706 5.298276 AGGAGTTGCTTGTTCGAATTAAACA 59.702 36.000 0.00 0.00 34.93 2.83
1607 1707 5.758924 AGGAGTTGCTTGTTCGAATTAAAC 58.241 37.500 0.00 2.86 0.00 2.01
1608 1708 6.038825 TCAAGGAGTTGCTTGTTCGAATTAAA 59.961 34.615 12.21 0.00 33.23 1.52
1609 1709 5.529430 TCAAGGAGTTGCTTGTTCGAATTAA 59.471 36.000 12.21 0.00 33.23 1.40
1610 1710 5.060506 TCAAGGAGTTGCTTGTTCGAATTA 58.939 37.500 12.21 0.00 33.23 1.40
1611 1711 3.882888 TCAAGGAGTTGCTTGTTCGAATT 59.117 39.130 12.21 0.00 33.23 2.17
1612 1712 3.476552 TCAAGGAGTTGCTTGTTCGAAT 58.523 40.909 12.21 0.00 33.23 3.34
1613 1713 2.912771 TCAAGGAGTTGCTTGTTCGAA 58.087 42.857 12.21 0.00 33.23 3.71
1616 1716 4.574599 AACATCAAGGAGTTGCTTGTTC 57.425 40.909 12.21 0.00 36.09 3.18
1743 1843 2.350895 CCAATGTCCCCGAGCACA 59.649 61.111 0.00 0.00 0.00 4.57
1880 1994 1.817217 CGTTGCAGCGAACAAGACGA 61.817 55.000 18.92 0.00 0.00 4.20
1899 2013 1.227674 CCGGTAGCTGGATCTTGCC 60.228 63.158 0.00 0.00 29.82 4.52
1925 2044 4.383173 CTGATGATTGGACGATTGATCCA 58.617 43.478 0.00 0.00 44.74 3.41
2016 2136 3.057315 TGCTTTAGAAGGCATGCAAGAAC 60.057 43.478 21.36 0.72 33.23 3.01
2045 2165 6.715718 CCAGAGCAATTTAGAATCCATCATCT 59.284 38.462 0.00 0.00 0.00 2.90
2083 2203 5.815740 GGAATTTAGAATCAGTTCTACGCCA 59.184 40.000 0.00 0.00 44.47 5.69
2124 2244 2.677228 CGAATGGGGCTTCAGGGT 59.323 61.111 0.00 0.00 0.00 4.34
2137 2290 0.246635 ACCTGCGAGTAACAGCGAAT 59.753 50.000 0.00 0.00 35.87 3.34
2138 2291 0.032952 AACCTGCGAGTAACAGCGAA 59.967 50.000 0.00 0.00 35.87 4.70
2167 2320 3.872603 AGTGTTGGAGTGCGGCCA 61.873 61.111 2.24 0.00 0.00 5.36
2237 2393 1.028330 CAGCCATCGATGCCAACTGT 61.028 55.000 20.25 0.00 0.00 3.55
2268 2424 3.514309 GGTAACCTGTGCTAAAGGAGAGA 59.486 47.826 6.87 0.00 38.27 3.10
2277 2433 0.177141 GGCGATGGTAACCTGTGCTA 59.823 55.000 0.00 0.00 0.00 3.49
2281 2437 1.217244 GACGGCGATGGTAACCTGT 59.783 57.895 16.62 0.00 0.00 4.00
2340 2496 3.319198 CGGCTGTAGGGGTGTGGT 61.319 66.667 0.00 0.00 0.00 4.16
2360 2516 0.178921 ACAGAGTGAAGGGCAGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
2371 2527 2.762887 CTGAAGGATAGCCACAGAGTGA 59.237 50.000 15.85 0.00 40.67 3.41
2439 2596 6.418057 TCCCTGCATGTACAAAGAAAAATT 57.582 33.333 0.00 0.00 0.00 1.82
2479 2637 4.970662 GCATCAGGCAACAGAATAGAAA 57.029 40.909 0.00 0.00 43.97 2.52
2509 2667 3.541632 CTGTACTATCCCCGCAAACAAT 58.458 45.455 0.00 0.00 0.00 2.71
2510 2668 2.937873 GCTGTACTATCCCCGCAAACAA 60.938 50.000 0.00 0.00 0.00 2.83
2565 2730 6.203915 TGCTCACGTACATGTTAAAAATGAGT 59.796 34.615 2.30 2.09 34.79 3.41
2635 2906 6.095440 GGTAAAGAGAAAATCATGCAAGGCTA 59.905 38.462 0.00 0.00 0.00 3.93
2651 2922 4.026744 CCTCAGTCCATCAGGTAAAGAGA 58.973 47.826 0.00 0.00 35.89 3.10
2659 2930 1.412079 CTCCTCCTCAGTCCATCAGG 58.588 60.000 0.00 0.00 0.00 3.86
2736 3007 8.159229 AGGATGTGGTAAAATTCTAGGTAAGT 57.841 34.615 0.00 0.00 0.00 2.24
2811 3083 6.042781 AGAGAAGTTGTTACATGTGGGAGTTA 59.957 38.462 9.11 0.00 0.00 2.24
2817 3089 4.452455 GGTGAGAGAAGTTGTTACATGTGG 59.548 45.833 9.11 0.00 0.00 4.17
2847 3119 7.187824 AGAATCATACCTGAACACTACATGT 57.812 36.000 2.69 2.69 46.42 3.21
2928 3215 4.161333 GTTGAAATCGAGCTCAACCATTG 58.839 43.478 22.74 0.00 43.65 2.82
2943 3230 6.989659 TCAACTACTCGGTAGAAGTTGAAAT 58.010 36.000 12.86 0.00 44.61 2.17
3035 3329 3.557595 GCATAACCTCCATATATCTGCGC 59.442 47.826 0.00 0.00 0.00 6.09
3036 3330 4.758688 TGCATAACCTCCATATATCTGCG 58.241 43.478 0.00 0.00 0.00 5.18
3115 3410 2.061848 TCATGTTTCCCTCCAACCTGA 58.938 47.619 0.00 0.00 0.00 3.86
3158 3457 9.056005 TCGCATGAGCTTCAGTTATTTTATATT 57.944 29.630 0.00 0.00 39.10 1.28
3264 3569 8.461222 CAATACATGCACCTCTGAAGAATAAAA 58.539 33.333 0.00 0.00 0.00 1.52
3266 3571 7.337938 TCAATACATGCACCTCTGAAGAATAA 58.662 34.615 0.00 0.00 0.00 1.40
3271 3576 4.763073 TCTCAATACATGCACCTCTGAAG 58.237 43.478 0.00 0.00 0.00 3.02
3361 3669 3.368013 GCGTCCATCAACGGGATATCATA 60.368 47.826 4.83 0.00 42.81 2.15
3362 3670 2.612972 GCGTCCATCAACGGGATATCAT 60.613 50.000 4.83 0.00 42.81 2.45
3420 3728 4.246458 GCTGTACTTTGTCACTCCTAAGG 58.754 47.826 0.00 0.00 0.00 2.69
3458 3772 3.161866 TGCATAAGTTGAAGGGGTTTCC 58.838 45.455 0.00 0.00 34.77 3.13
3478 3792 5.618056 AGTTCTTCACAACATACTGCATG 57.382 39.130 0.00 0.00 40.78 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.