Multiple sequence alignment - TraesCS5B01G113600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G113600 chr5B 100.000 2496 0 0 1 2496 181617299 181614804 0.000000e+00 4610
1 TraesCS5B01G113600 chr5B 94.720 2178 105 9 1 2170 532513069 532510894 0.000000e+00 3376
2 TraesCS5B01G113600 chr5B 97.546 326 8 0 2171 2496 181599823 181599498 2.170000e-155 558
3 TraesCS5B01G113600 chr5B 95.706 326 14 0 2171 2496 181607481 181607156 2.200000e-145 525
4 TraesCS5B01G113600 chr5B 94.020 301 16 2 2171 2469 107392321 107392621 2.930000e-124 455
5 TraesCS5B01G113600 chr3B 95.350 2172 96 5 1 2170 46770773 46772941 0.000000e+00 3446
6 TraesCS5B01G113600 chr3B 91.437 327 26 2 2171 2496 75409383 75409058 4.900000e-122 448
7 TraesCS5B01G113600 chr7B 95.260 2173 97 6 1 2170 16169332 16167163 0.000000e+00 3437
8 TraesCS5B01G113600 chr6B 95.037 2176 100 8 1 2170 341922667 341924840 0.000000e+00 3413
9 TraesCS5B01G113600 chr6B 94.989 2175 100 9 1 2170 698944600 698942430 0.000000e+00 3404
10 TraesCS5B01G113600 chr6B 94.761 2176 106 8 1 2170 341940640 341942813 0.000000e+00 3380
11 TraesCS5B01G113600 chr6B 94.739 2167 109 5 1 2165 388449473 388451636 0.000000e+00 3365
12 TraesCS5B01G113600 chr6B 92.698 315 21 2 2171 2484 149006488 149006801 1.050000e-123 453
13 TraesCS5B01G113600 chr1B 94.802 2174 104 9 1 2171 547568697 547566530 0.000000e+00 3380
14 TraesCS5B01G113600 chr1B 94.718 2177 104 10 1 2170 306219557 306221729 0.000000e+00 3373
15 TraesCS5B01G113600 chr1B 94.175 309 15 3 2171 2477 390959514 390959821 3.760000e-128 468
16 TraesCS5B01G113600 chr4B 93.312 314 20 1 2171 2484 315371515 315371827 1.750000e-126 462
17 TraesCS5B01G113600 chr2B 93.082 318 19 3 2171 2487 179165405 179165090 1.750000e-126 462
18 TraesCS5B01G113600 chr6A 92.698 315 19 4 2171 2484 131456639 131456950 3.790000e-123 451


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G113600 chr5B 181614804 181617299 2495 True 4610 4610 100.000 1 2496 1 chr5B.!!$R3 2495
1 TraesCS5B01G113600 chr5B 532510894 532513069 2175 True 3376 3376 94.720 1 2170 1 chr5B.!!$R4 2169
2 TraesCS5B01G113600 chr3B 46770773 46772941 2168 False 3446 3446 95.350 1 2170 1 chr3B.!!$F1 2169
3 TraesCS5B01G113600 chr7B 16167163 16169332 2169 True 3437 3437 95.260 1 2170 1 chr7B.!!$R1 2169
4 TraesCS5B01G113600 chr6B 341922667 341924840 2173 False 3413 3413 95.037 1 2170 1 chr6B.!!$F2 2169
5 TraesCS5B01G113600 chr6B 698942430 698944600 2170 True 3404 3404 94.989 1 2170 1 chr6B.!!$R1 2169
6 TraesCS5B01G113600 chr6B 341940640 341942813 2173 False 3380 3380 94.761 1 2170 1 chr6B.!!$F3 2169
7 TraesCS5B01G113600 chr6B 388449473 388451636 2163 False 3365 3365 94.739 1 2165 1 chr6B.!!$F4 2164
8 TraesCS5B01G113600 chr1B 547566530 547568697 2167 True 3380 3380 94.802 1 2171 1 chr1B.!!$R1 2170
9 TraesCS5B01G113600 chr1B 306219557 306221729 2172 False 3373 3373 94.718 1 2170 1 chr1B.!!$F1 2169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 522 1.094785 GAATGTAGTTGCATGCGGGT 58.905 50.0 14.09 1.69 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 2234 0.034089 ATCTCCGGAAAAGGCAAGGG 60.034 55.0 5.23 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 2.227036 CCCCTGGTTCTGTGAGGCT 61.227 63.158 0.00 0.00 0.00 4.58
218 219 2.830370 GGAAATGCGAGGGCCAGG 60.830 66.667 6.18 0.00 38.85 4.45
334 336 6.412362 ACTTTCTAGACATGATCCGCTTAT 57.588 37.500 0.00 0.00 0.00 1.73
518 522 1.094785 GAATGTAGTTGCATGCGGGT 58.905 50.000 14.09 1.69 0.00 5.28
976 987 4.717877 TCTGCTTCTCATTTTCCTTCACA 58.282 39.130 0.00 0.00 0.00 3.58
993 1004 5.449588 CCTTCACATTTACATGCAGGTCATC 60.450 44.000 7.56 0.00 33.05 2.92
1105 1116 4.560108 GCTTTGAGGTGCTTGATTCAATGT 60.560 41.667 0.00 0.00 31.28 2.71
1208 1219 4.515191 CGAAAACTCAAAGGTCCAGATCAA 59.485 41.667 0.00 0.00 0.00 2.57
1220 1231 3.127030 GTCCAGATCAAACATTTCCCGAC 59.873 47.826 0.00 0.00 0.00 4.79
1318 1333 4.507691 CCCACCCCTCTTTGTTGTTACATA 60.508 45.833 0.00 0.00 33.44 2.29
1413 1429 2.041153 GTGGCTTTCACAGGTTGGG 58.959 57.895 0.00 0.00 45.39 4.12
1457 1473 0.107410 ACTTGTTCCCGCTGTCACAA 60.107 50.000 0.00 0.00 0.00 3.33
1460 1476 0.753867 TGTTCCCGCTGTCACAACTA 59.246 50.000 0.00 0.00 0.00 2.24
1495 1511 4.331968 AGCTCCGGAAAATTTACACATGA 58.668 39.130 5.23 0.00 0.00 3.07
1554 1570 1.811266 CACGCGAGTTCATGGAGGG 60.811 63.158 15.93 0.00 46.40 4.30
1557 1573 1.901085 GCGAGTTCATGGAGGGAGT 59.099 57.895 0.00 0.00 0.00 3.85
1558 1574 1.112113 GCGAGTTCATGGAGGGAGTA 58.888 55.000 0.00 0.00 0.00 2.59
1631 1647 5.353938 GGACGCATACCTTACATTCTGTTA 58.646 41.667 0.00 0.00 0.00 2.41
1650 1666 4.160252 TGTTACCGAGGAATGTAAGGTACC 59.840 45.833 2.73 2.73 37.20 3.34
1651 1667 3.111741 ACCGAGGAATGTAAGGTACCT 57.888 47.619 9.21 9.21 32.76 3.08
1704 1723 2.897271 ATGTTATGACTGCAACCCCA 57.103 45.000 0.00 0.00 0.00 4.96
1871 1891 1.150827 TGCTGCTTCGAATGTGTCTG 58.849 50.000 0.00 0.00 0.00 3.51
2153 2176 7.537715 CAGAGTCATTACAAATAACATGGCAA 58.462 34.615 0.00 0.00 0.00 4.52
2171 2194 7.814107 ACATGGCAAATTTCAGTACAACTAATG 59.186 33.333 0.00 0.00 0.00 1.90
2172 2195 7.283625 TGGCAAATTTCAGTACAACTAATGT 57.716 32.000 0.00 0.00 46.36 2.71
2173 2196 8.397575 TGGCAAATTTCAGTACAACTAATGTA 57.602 30.769 0.00 0.00 43.63 2.29
2174 2197 8.851145 TGGCAAATTTCAGTACAACTAATGTAA 58.149 29.630 0.00 0.00 45.81 2.41
2175 2198 9.124807 GGCAAATTTCAGTACAACTAATGTAAC 57.875 33.333 0.00 0.00 45.81 2.50
2176 2199 8.837059 GCAAATTTCAGTACAACTAATGTAACG 58.163 33.333 0.00 0.00 45.81 3.18
2177 2200 8.837059 CAAATTTCAGTACAACTAATGTAACGC 58.163 33.333 0.00 0.00 45.81 4.84
2178 2201 6.470557 TTTCAGTACAACTAATGTAACGCC 57.529 37.500 0.00 0.00 45.81 5.68
2179 2202 4.497300 TCAGTACAACTAATGTAACGCCC 58.503 43.478 0.00 0.00 45.81 6.13
2180 2203 3.619929 CAGTACAACTAATGTAACGCCCC 59.380 47.826 0.00 0.00 45.81 5.80
2181 2204 1.729284 ACAACTAATGTAACGCCCCG 58.271 50.000 0.00 0.00 41.63 5.73
2182 2205 1.011333 CAACTAATGTAACGCCCCGG 58.989 55.000 0.00 0.00 0.00 5.73
2183 2206 0.903942 AACTAATGTAACGCCCCGGA 59.096 50.000 0.73 0.00 0.00 5.14
2184 2207 1.125633 ACTAATGTAACGCCCCGGAT 58.874 50.000 0.73 0.00 0.00 4.18
2185 2208 2.318908 ACTAATGTAACGCCCCGGATA 58.681 47.619 0.73 0.00 0.00 2.59
2186 2209 2.036346 ACTAATGTAACGCCCCGGATAC 59.964 50.000 0.73 0.00 0.00 2.24
2187 2210 0.831966 AATGTAACGCCCCGGATACA 59.168 50.000 0.73 4.76 37.55 2.29
2188 2211 0.831966 ATGTAACGCCCCGGATACAA 59.168 50.000 0.73 0.00 37.05 2.41
2189 2212 0.108233 TGTAACGCCCCGGATACAAC 60.108 55.000 0.73 0.00 33.13 3.32
2190 2213 0.176449 GTAACGCCCCGGATACAACT 59.824 55.000 0.73 0.00 0.00 3.16
2191 2214 0.903942 TAACGCCCCGGATACAACTT 59.096 50.000 0.73 0.00 0.00 2.66
2192 2215 0.037160 AACGCCCCGGATACAACTTT 59.963 50.000 0.73 0.00 0.00 2.66
2193 2216 0.392060 ACGCCCCGGATACAACTTTC 60.392 55.000 0.73 0.00 0.00 2.62
2194 2217 1.093496 CGCCCCGGATACAACTTTCC 61.093 60.000 0.73 0.00 0.00 3.13
2195 2218 0.034863 GCCCCGGATACAACTTTCCA 60.035 55.000 0.73 0.00 31.99 3.53
2196 2219 1.409661 GCCCCGGATACAACTTTCCAT 60.410 52.381 0.73 0.00 31.99 3.41
2197 2220 2.158726 GCCCCGGATACAACTTTCCATA 60.159 50.000 0.73 0.00 31.99 2.74
2198 2221 3.497942 GCCCCGGATACAACTTTCCATAT 60.498 47.826 0.73 0.00 31.99 1.78
2199 2222 4.725490 CCCCGGATACAACTTTCCATATT 58.275 43.478 0.73 0.00 31.99 1.28
2200 2223 4.760204 CCCCGGATACAACTTTCCATATTC 59.240 45.833 0.73 0.00 31.99 1.75
2201 2224 4.451096 CCCGGATACAACTTTCCATATTCG 59.549 45.833 0.73 0.00 31.99 3.34
2202 2225 5.054477 CCGGATACAACTTTCCATATTCGT 58.946 41.667 0.00 0.00 31.99 3.85
2203 2226 6.218019 CCGGATACAACTTTCCATATTCGTA 58.782 40.000 0.00 0.00 31.99 3.43
2204 2227 6.702723 CCGGATACAACTTTCCATATTCGTAA 59.297 38.462 0.00 0.00 31.99 3.18
2205 2228 7.306983 CCGGATACAACTTTCCATATTCGTAAC 60.307 40.741 0.00 0.00 31.99 2.50
2206 2229 7.437267 CGGATACAACTTTCCATATTCGTAACT 59.563 37.037 0.00 0.00 31.99 2.24
2207 2230 8.762426 GGATACAACTTTCCATATTCGTAACTC 58.238 37.037 0.00 0.00 31.99 3.01
2208 2231 6.980051 ACAACTTTCCATATTCGTAACTCC 57.020 37.500 0.00 0.00 0.00 3.85
2209 2232 6.469410 ACAACTTTCCATATTCGTAACTCCA 58.531 36.000 0.00 0.00 0.00 3.86
2210 2233 6.938030 ACAACTTTCCATATTCGTAACTCCAA 59.062 34.615 0.00 0.00 0.00 3.53
2211 2234 6.980051 ACTTTCCATATTCGTAACTCCAAC 57.020 37.500 0.00 0.00 0.00 3.77
2212 2235 5.878669 ACTTTCCATATTCGTAACTCCAACC 59.121 40.000 0.00 0.00 0.00 3.77
2213 2236 4.411256 TCCATATTCGTAACTCCAACCC 57.589 45.455 0.00 0.00 0.00 4.11
2214 2237 4.035112 TCCATATTCGTAACTCCAACCCT 58.965 43.478 0.00 0.00 0.00 4.34
2215 2238 4.472108 TCCATATTCGTAACTCCAACCCTT 59.528 41.667 0.00 0.00 0.00 3.95
2216 2239 4.574828 CCATATTCGTAACTCCAACCCTTG 59.425 45.833 0.00 0.00 0.00 3.61
2217 2240 1.886886 TTCGTAACTCCAACCCTTGC 58.113 50.000 0.00 0.00 0.00 4.01
2218 2241 0.035739 TCGTAACTCCAACCCTTGCC 59.964 55.000 0.00 0.00 0.00 4.52
2219 2242 0.036306 CGTAACTCCAACCCTTGCCT 59.964 55.000 0.00 0.00 0.00 4.75
2220 2243 1.544759 CGTAACTCCAACCCTTGCCTT 60.545 52.381 0.00 0.00 0.00 4.35
2221 2244 2.594131 GTAACTCCAACCCTTGCCTTT 58.406 47.619 0.00 0.00 0.00 3.11
2222 2245 2.174685 AACTCCAACCCTTGCCTTTT 57.825 45.000 0.00 0.00 0.00 2.27
2223 2246 1.704641 ACTCCAACCCTTGCCTTTTC 58.295 50.000 0.00 0.00 0.00 2.29
2224 2247 0.969149 CTCCAACCCTTGCCTTTTCC 59.031 55.000 0.00 0.00 0.00 3.13
2225 2248 0.825840 TCCAACCCTTGCCTTTTCCG 60.826 55.000 0.00 0.00 0.00 4.30
2226 2249 1.665442 CAACCCTTGCCTTTTCCGG 59.335 57.895 0.00 0.00 0.00 5.14
2227 2250 0.825840 CAACCCTTGCCTTTTCCGGA 60.826 55.000 0.00 0.00 0.00 5.14
2228 2251 0.539669 AACCCTTGCCTTTTCCGGAG 60.540 55.000 3.34 0.00 0.00 4.63
2229 2252 1.378762 CCCTTGCCTTTTCCGGAGA 59.621 57.895 3.34 0.00 0.00 3.71
2230 2253 0.034089 CCCTTGCCTTTTCCGGAGAT 60.034 55.000 3.34 0.00 0.00 2.75
2231 2254 1.098050 CCTTGCCTTTTCCGGAGATG 58.902 55.000 3.34 2.04 0.00 2.90
2232 2255 0.453390 CTTGCCTTTTCCGGAGATGC 59.547 55.000 3.34 7.17 0.00 3.91
2233 2256 1.305219 TTGCCTTTTCCGGAGATGCG 61.305 55.000 3.34 0.00 0.00 4.73
2234 2257 1.449601 GCCTTTTCCGGAGATGCGA 60.450 57.895 3.34 0.00 0.00 5.10
2235 2258 0.815615 GCCTTTTCCGGAGATGCGAT 60.816 55.000 3.34 0.00 0.00 4.58
2236 2259 1.540363 GCCTTTTCCGGAGATGCGATA 60.540 52.381 3.34 0.00 0.00 2.92
2237 2260 2.872038 GCCTTTTCCGGAGATGCGATAT 60.872 50.000 3.34 0.00 0.00 1.63
2238 2261 2.738846 CCTTTTCCGGAGATGCGATATG 59.261 50.000 3.34 0.00 0.00 1.78
2239 2262 3.393800 CTTTTCCGGAGATGCGATATGT 58.606 45.455 3.34 0.00 0.00 2.29
2240 2263 3.469008 TTTCCGGAGATGCGATATGTT 57.531 42.857 3.34 0.00 0.00 2.71
2241 2264 4.594123 TTTCCGGAGATGCGATATGTTA 57.406 40.909 3.34 0.00 0.00 2.41
2242 2265 4.801330 TTCCGGAGATGCGATATGTTAT 57.199 40.909 3.34 0.00 0.00 1.89
2243 2266 4.801330 TCCGGAGATGCGATATGTTATT 57.199 40.909 0.00 0.00 0.00 1.40
2244 2267 5.147330 TCCGGAGATGCGATATGTTATTT 57.853 39.130 0.00 0.00 0.00 1.40
2245 2268 5.168569 TCCGGAGATGCGATATGTTATTTC 58.831 41.667 0.00 0.00 0.00 2.17
2246 2269 4.330074 CCGGAGATGCGATATGTTATTTCC 59.670 45.833 0.00 0.00 0.00 3.13
2247 2270 5.171476 CGGAGATGCGATATGTTATTTCCT 58.829 41.667 0.00 0.00 0.00 3.36
2248 2271 5.289675 CGGAGATGCGATATGTTATTTCCTC 59.710 44.000 0.00 0.00 0.00 3.71
2249 2272 5.582665 GGAGATGCGATATGTTATTTCCTCC 59.417 44.000 0.00 0.00 0.00 4.30
2250 2273 5.171476 AGATGCGATATGTTATTTCCTCCG 58.829 41.667 0.00 0.00 0.00 4.63
2251 2274 4.330944 TGCGATATGTTATTTCCTCCGT 57.669 40.909 0.00 0.00 0.00 4.69
2252 2275 4.055360 TGCGATATGTTATTTCCTCCGTG 58.945 43.478 0.00 0.00 0.00 4.94
2253 2276 3.432252 GCGATATGTTATTTCCTCCGTGG 59.568 47.826 0.00 0.00 37.10 4.94
2254 2277 4.628074 CGATATGTTATTTCCTCCGTGGT 58.372 43.478 0.00 0.00 37.07 4.16
2255 2278 5.054477 CGATATGTTATTTCCTCCGTGGTT 58.946 41.667 0.00 0.00 37.07 3.67
2256 2279 5.050363 CGATATGTTATTTCCTCCGTGGTTG 60.050 44.000 0.00 0.00 37.07 3.77
2257 2280 2.785562 TGTTATTTCCTCCGTGGTTGG 58.214 47.619 0.00 0.00 37.07 3.77
2258 2281 2.089201 GTTATTTCCTCCGTGGTTGGG 58.911 52.381 2.06 0.00 37.07 4.12
2259 2282 1.364269 TATTTCCTCCGTGGTTGGGT 58.636 50.000 2.06 0.00 37.07 4.51
2260 2283 0.481128 ATTTCCTCCGTGGTTGGGTT 59.519 50.000 2.06 0.00 37.07 4.11
2261 2284 0.259356 TTTCCTCCGTGGTTGGGTTT 59.741 50.000 2.06 0.00 37.07 3.27
2262 2285 0.259356 TTCCTCCGTGGTTGGGTTTT 59.741 50.000 2.06 0.00 37.07 2.43
2263 2286 0.466555 TCCTCCGTGGTTGGGTTTTG 60.467 55.000 2.06 0.00 37.07 2.44
2264 2287 0.753848 CCTCCGTGGTTGGGTTTTGT 60.754 55.000 0.00 0.00 0.00 2.83
2265 2288 0.666374 CTCCGTGGTTGGGTTTTGTC 59.334 55.000 0.00 0.00 0.00 3.18
2266 2289 0.256464 TCCGTGGTTGGGTTTTGTCT 59.744 50.000 0.00 0.00 0.00 3.41
2267 2290 1.107945 CCGTGGTTGGGTTTTGTCTT 58.892 50.000 0.00 0.00 0.00 3.01
2268 2291 1.478916 CCGTGGTTGGGTTTTGTCTTT 59.521 47.619 0.00 0.00 0.00 2.52
2269 2292 2.093921 CCGTGGTTGGGTTTTGTCTTTT 60.094 45.455 0.00 0.00 0.00 2.27
2270 2293 2.926838 CGTGGTTGGGTTTTGTCTTTTG 59.073 45.455 0.00 0.00 0.00 2.44
2271 2294 3.615351 CGTGGTTGGGTTTTGTCTTTTGT 60.615 43.478 0.00 0.00 0.00 2.83
2272 2295 4.320023 GTGGTTGGGTTTTGTCTTTTGTT 58.680 39.130 0.00 0.00 0.00 2.83
2273 2296 4.757657 GTGGTTGGGTTTTGTCTTTTGTTT 59.242 37.500 0.00 0.00 0.00 2.83
2274 2297 5.239744 GTGGTTGGGTTTTGTCTTTTGTTTT 59.760 36.000 0.00 0.00 0.00 2.43
2275 2298 5.239525 TGGTTGGGTTTTGTCTTTTGTTTTG 59.760 36.000 0.00 0.00 0.00 2.44
2276 2299 5.150683 GTTGGGTTTTGTCTTTTGTTTTGC 58.849 37.500 0.00 0.00 0.00 3.68
2277 2300 3.433615 TGGGTTTTGTCTTTTGTTTTGCG 59.566 39.130 0.00 0.00 0.00 4.85
2278 2301 3.433957 GGGTTTTGTCTTTTGTTTTGCGT 59.566 39.130 0.00 0.00 0.00 5.24
2279 2302 4.083749 GGGTTTTGTCTTTTGTTTTGCGTT 60.084 37.500 0.00 0.00 0.00 4.84
2280 2303 4.843448 GGTTTTGTCTTTTGTTTTGCGTTG 59.157 37.500 0.00 0.00 0.00 4.10
2281 2304 5.436410 GTTTTGTCTTTTGTTTTGCGTTGT 58.564 33.333 0.00 0.00 0.00 3.32
2282 2305 4.637574 TTGTCTTTTGTTTTGCGTTGTG 57.362 36.364 0.00 0.00 0.00 3.33
2283 2306 3.643763 TGTCTTTTGTTTTGCGTTGTGT 58.356 36.364 0.00 0.00 0.00 3.72
2284 2307 4.051922 TGTCTTTTGTTTTGCGTTGTGTT 58.948 34.783 0.00 0.00 0.00 3.32
2285 2308 4.149046 TGTCTTTTGTTTTGCGTTGTGTTC 59.851 37.500 0.00 0.00 0.00 3.18
2286 2309 4.149046 GTCTTTTGTTTTGCGTTGTGTTCA 59.851 37.500 0.00 0.00 0.00 3.18
2287 2310 4.926238 TCTTTTGTTTTGCGTTGTGTTCAT 59.074 33.333 0.00 0.00 0.00 2.57
2288 2311 4.574527 TTTGTTTTGCGTTGTGTTCATG 57.425 36.364 0.00 0.00 0.00 3.07
2289 2312 3.223423 TGTTTTGCGTTGTGTTCATGT 57.777 38.095 0.00 0.00 0.00 3.21
2290 2313 3.175152 TGTTTTGCGTTGTGTTCATGTC 58.825 40.909 0.00 0.00 0.00 3.06
2291 2314 3.175152 GTTTTGCGTTGTGTTCATGTCA 58.825 40.909 0.00 0.00 0.00 3.58
2292 2315 3.706802 TTTGCGTTGTGTTCATGTCAT 57.293 38.095 0.00 0.00 0.00 3.06
2293 2316 2.684754 TGCGTTGTGTTCATGTCATG 57.315 45.000 6.47 6.47 0.00 3.07
2294 2317 1.330306 GCGTTGTGTTCATGTCATGC 58.670 50.000 8.03 0.00 0.00 4.06
2295 2318 1.334870 GCGTTGTGTTCATGTCATGCA 60.335 47.619 8.03 0.00 0.00 3.96
2296 2319 2.669113 GCGTTGTGTTCATGTCATGCAT 60.669 45.455 8.03 0.00 38.60 3.96
2297 2320 3.165890 CGTTGTGTTCATGTCATGCATC 58.834 45.455 8.03 2.04 35.19 3.91
2298 2321 3.120095 CGTTGTGTTCATGTCATGCATCT 60.120 43.478 8.03 0.00 35.19 2.90
2299 2322 4.409570 GTTGTGTTCATGTCATGCATCTC 58.590 43.478 8.03 0.00 35.19 2.75
2300 2323 3.677190 TGTGTTCATGTCATGCATCTCA 58.323 40.909 8.03 0.00 35.19 3.27
2301 2324 4.266714 TGTGTTCATGTCATGCATCTCAT 58.733 39.130 8.03 1.47 35.19 2.90
2302 2325 4.334481 TGTGTTCATGTCATGCATCTCATC 59.666 41.667 8.03 0.00 35.19 2.92
2303 2326 4.575236 GTGTTCATGTCATGCATCTCATCT 59.425 41.667 8.03 0.00 35.19 2.90
2304 2327 4.814771 TGTTCATGTCATGCATCTCATCTC 59.185 41.667 8.03 0.00 35.19 2.75
2305 2328 4.682778 TCATGTCATGCATCTCATCTCA 57.317 40.909 8.03 0.00 35.19 3.27
2306 2329 5.228945 TCATGTCATGCATCTCATCTCAT 57.771 39.130 8.03 0.00 35.19 2.90
2307 2330 6.354794 TCATGTCATGCATCTCATCTCATA 57.645 37.500 8.03 0.00 35.19 2.15
2308 2331 6.398918 TCATGTCATGCATCTCATCTCATAG 58.601 40.000 8.03 0.00 35.19 2.23
2309 2332 4.566987 TGTCATGCATCTCATCTCATAGC 58.433 43.478 0.00 0.00 31.79 2.97
2310 2333 4.039973 TGTCATGCATCTCATCTCATAGCA 59.960 41.667 0.00 0.00 31.79 3.49
2311 2334 5.179533 GTCATGCATCTCATCTCATAGCAT 58.820 41.667 0.00 0.00 41.42 3.79
2312 2335 5.292345 GTCATGCATCTCATCTCATAGCATC 59.708 44.000 0.00 0.00 39.00 3.91
2313 2336 4.884668 TGCATCTCATCTCATAGCATCA 57.115 40.909 0.00 0.00 0.00 3.07
2314 2337 5.422214 TGCATCTCATCTCATAGCATCAT 57.578 39.130 0.00 0.00 0.00 2.45
2315 2338 5.178797 TGCATCTCATCTCATAGCATCATG 58.821 41.667 0.00 0.00 0.00 3.07
2316 2339 4.034626 GCATCTCATCTCATAGCATCATGC 59.965 45.833 0.00 0.00 45.46 4.06
2345 2368 6.457355 TGCATCTGCATGTTTTCATAAAACT 58.543 32.000 14.38 0.88 46.78 2.66
2346 2369 6.587226 TGCATCTGCATGTTTTCATAAAACTC 59.413 34.615 14.38 6.40 46.78 3.01
2347 2370 6.237384 GCATCTGCATGTTTTCATAAAACTCG 60.237 38.462 14.38 7.94 44.49 4.18
2348 2371 8.517576 GCATCTGCATGTTTTCATAAAACTCGT 61.518 37.037 14.38 1.42 44.49 4.18
2354 2377 5.273523 GTTTTCATAAAACTCGTAGCCGT 57.726 39.130 7.78 0.00 45.55 5.68
2355 2378 5.682869 GTTTTCATAAAACTCGTAGCCGTT 58.317 37.500 7.78 0.00 45.55 4.44
2356 2379 5.927954 TTTCATAAAACTCGTAGCCGTTT 57.072 34.783 0.00 0.00 33.66 3.60
2357 2380 4.914312 TCATAAAACTCGTAGCCGTTTG 57.086 40.909 0.00 0.00 32.88 2.93
2358 2381 3.123959 TCATAAAACTCGTAGCCGTTTGC 59.876 43.478 0.00 0.00 41.71 3.68
2359 2382 1.301423 AAAACTCGTAGCCGTTTGCA 58.699 45.000 0.00 0.00 44.83 4.08
2360 2383 0.865769 AAACTCGTAGCCGTTTGCAG 59.134 50.000 0.00 0.00 44.83 4.41
2361 2384 0.249741 AACTCGTAGCCGTTTGCAGT 60.250 50.000 0.00 0.00 44.83 4.40
2362 2385 0.249741 ACTCGTAGCCGTTTGCAGTT 60.250 50.000 0.00 0.00 44.83 3.16
2363 2386 0.163788 CTCGTAGCCGTTTGCAGTTG 59.836 55.000 0.00 0.00 44.83 3.16
2364 2387 1.440353 CGTAGCCGTTTGCAGTTGC 60.440 57.895 0.00 0.00 44.83 4.17
2365 2388 1.081442 GTAGCCGTTTGCAGTTGCC 60.081 57.895 1.06 0.00 44.83 4.52
2366 2389 2.265182 TAGCCGTTTGCAGTTGCCC 61.265 57.895 1.06 0.00 44.83 5.36
2367 2390 2.690653 TAGCCGTTTGCAGTTGCCCT 62.691 55.000 1.06 0.00 44.83 5.19
2368 2391 3.128375 CCGTTTGCAGTTGCCCTT 58.872 55.556 1.06 0.00 41.18 3.95
2369 2392 1.441311 CCGTTTGCAGTTGCCCTTT 59.559 52.632 1.06 0.00 41.18 3.11
2370 2393 0.597377 CCGTTTGCAGTTGCCCTTTC 60.597 55.000 1.06 0.00 41.18 2.62
2371 2394 0.385390 CGTTTGCAGTTGCCCTTTCT 59.615 50.000 1.06 0.00 41.18 2.52
2372 2395 1.600413 CGTTTGCAGTTGCCCTTTCTC 60.600 52.381 1.06 0.00 41.18 2.87
2373 2396 1.683385 GTTTGCAGTTGCCCTTTCTCT 59.317 47.619 1.06 0.00 41.18 3.10
2374 2397 1.609208 TTGCAGTTGCCCTTTCTCTC 58.391 50.000 1.06 0.00 41.18 3.20
2375 2398 0.767375 TGCAGTTGCCCTTTCTCTCT 59.233 50.000 1.06 0.00 41.18 3.10
2376 2399 1.143684 TGCAGTTGCCCTTTCTCTCTT 59.856 47.619 1.06 0.00 41.18 2.85
2377 2400 2.234143 GCAGTTGCCCTTTCTCTCTTT 58.766 47.619 0.00 0.00 34.31 2.52
2378 2401 2.030451 GCAGTTGCCCTTTCTCTCTTTG 60.030 50.000 0.00 0.00 34.31 2.77
2379 2402 2.030451 CAGTTGCCCTTTCTCTCTTTGC 60.030 50.000 0.00 0.00 0.00 3.68
2380 2403 1.270826 GTTGCCCTTTCTCTCTTTGCC 59.729 52.381 0.00 0.00 0.00 4.52
2381 2404 0.773644 TGCCCTTTCTCTCTTTGCCT 59.226 50.000 0.00 0.00 0.00 4.75
2382 2405 1.145738 TGCCCTTTCTCTCTTTGCCTT 59.854 47.619 0.00 0.00 0.00 4.35
2383 2406 1.815613 GCCCTTTCTCTCTTTGCCTTC 59.184 52.381 0.00 0.00 0.00 3.46
2384 2407 2.079925 CCCTTTCTCTCTTTGCCTTCG 58.920 52.381 0.00 0.00 0.00 3.79
2385 2408 2.551071 CCCTTTCTCTCTTTGCCTTCGT 60.551 50.000 0.00 0.00 0.00 3.85
2386 2409 3.142174 CCTTTCTCTCTTTGCCTTCGTT 58.858 45.455 0.00 0.00 0.00 3.85
2387 2410 3.058639 CCTTTCTCTCTTTGCCTTCGTTG 60.059 47.826 0.00 0.00 0.00 4.10
2388 2411 2.910688 TCTCTCTTTGCCTTCGTTGT 57.089 45.000 0.00 0.00 0.00 3.32
2389 2412 2.755650 TCTCTCTTTGCCTTCGTTGTC 58.244 47.619 0.00 0.00 0.00 3.18
2390 2413 2.102420 TCTCTCTTTGCCTTCGTTGTCA 59.898 45.455 0.00 0.00 0.00 3.58
2391 2414 3.070018 CTCTCTTTGCCTTCGTTGTCAT 58.930 45.455 0.00 0.00 0.00 3.06
2392 2415 3.476552 TCTCTTTGCCTTCGTTGTCATT 58.523 40.909 0.00 0.00 0.00 2.57
2393 2416 3.882888 TCTCTTTGCCTTCGTTGTCATTT 59.117 39.130 0.00 0.00 0.00 2.32
2394 2417 4.338118 TCTCTTTGCCTTCGTTGTCATTTT 59.662 37.500 0.00 0.00 0.00 1.82
2395 2418 4.358851 TCTTTGCCTTCGTTGTCATTTTG 58.641 39.130 0.00 0.00 0.00 2.44
2396 2419 3.791973 TTGCCTTCGTTGTCATTTTGT 57.208 38.095 0.00 0.00 0.00 2.83
2397 2420 3.347958 TGCCTTCGTTGTCATTTTGTC 57.652 42.857 0.00 0.00 0.00 3.18
2398 2421 2.685388 TGCCTTCGTTGTCATTTTGTCA 59.315 40.909 0.00 0.00 0.00 3.58
2399 2422 3.243035 TGCCTTCGTTGTCATTTTGTCAG 60.243 43.478 0.00 0.00 0.00 3.51
2400 2423 3.853307 GCCTTCGTTGTCATTTTGTCAGG 60.853 47.826 0.00 0.00 0.00 3.86
2401 2424 3.300009 CTTCGTTGTCATTTTGTCAGGC 58.700 45.455 0.00 0.00 0.00 4.85
2402 2425 1.606668 TCGTTGTCATTTTGTCAGGCC 59.393 47.619 0.00 0.00 0.00 5.19
2403 2426 1.335872 CGTTGTCATTTTGTCAGGCCC 60.336 52.381 0.00 0.00 0.00 5.80
2404 2427 1.963515 GTTGTCATTTTGTCAGGCCCT 59.036 47.619 0.00 0.00 0.00 5.19
2405 2428 2.365293 GTTGTCATTTTGTCAGGCCCTT 59.635 45.455 0.00 0.00 0.00 3.95
2406 2429 1.962807 TGTCATTTTGTCAGGCCCTTG 59.037 47.619 0.00 0.00 0.00 3.61
2407 2430 1.963515 GTCATTTTGTCAGGCCCTTGT 59.036 47.619 0.00 0.00 0.00 3.16
2408 2431 2.029918 GTCATTTTGTCAGGCCCTTGTC 60.030 50.000 0.00 0.00 0.00 3.18
2409 2432 1.273327 CATTTTGTCAGGCCCTTGTCC 59.727 52.381 0.00 0.00 0.00 4.02
2410 2433 0.555769 TTTTGTCAGGCCCTTGTCCT 59.444 50.000 0.00 0.00 0.00 3.85
2411 2434 0.110486 TTTGTCAGGCCCTTGTCCTC 59.890 55.000 0.00 0.00 0.00 3.71
2412 2435 2.111999 TTGTCAGGCCCTTGTCCTCG 62.112 60.000 0.00 0.00 0.00 4.63
2413 2436 2.203788 TCAGGCCCTTGTCCTCGT 60.204 61.111 0.00 0.00 0.00 4.18
2414 2437 1.841556 TCAGGCCCTTGTCCTCGTT 60.842 57.895 0.00 0.00 0.00 3.85
2415 2438 1.672356 CAGGCCCTTGTCCTCGTTG 60.672 63.158 0.00 0.00 0.00 4.10
2416 2439 1.841556 AGGCCCTTGTCCTCGTTGA 60.842 57.895 0.00 0.00 0.00 3.18
2417 2440 1.671379 GGCCCTTGTCCTCGTTGAC 60.671 63.158 0.00 0.99 35.77 3.18
2418 2441 1.671379 GCCCTTGTCCTCGTTGACC 60.671 63.158 4.97 0.00 34.25 4.02
2419 2442 2.058675 CCCTTGTCCTCGTTGACCT 58.941 57.895 4.97 0.00 34.25 3.85
2420 2443 0.037232 CCCTTGTCCTCGTTGACCTC 60.037 60.000 4.97 0.00 34.25 3.85
2421 2444 0.969894 CCTTGTCCTCGTTGACCTCT 59.030 55.000 4.97 0.00 34.25 3.69
2422 2445 1.067495 CCTTGTCCTCGTTGACCTCTC 60.067 57.143 4.97 0.00 34.25 3.20
2423 2446 1.889829 CTTGTCCTCGTTGACCTCTCT 59.110 52.381 4.97 0.00 34.25 3.10
2424 2447 1.535833 TGTCCTCGTTGACCTCTCTC 58.464 55.000 4.97 0.00 34.25 3.20
2425 2448 1.202891 TGTCCTCGTTGACCTCTCTCA 60.203 52.381 4.97 0.00 34.25 3.27
2426 2449 1.470890 GTCCTCGTTGACCTCTCTCAG 59.529 57.143 0.00 0.00 0.00 3.35
2427 2450 1.351350 TCCTCGTTGACCTCTCTCAGA 59.649 52.381 0.00 0.00 0.00 3.27
2428 2451 1.470890 CCTCGTTGACCTCTCTCAGAC 59.529 57.143 0.00 0.00 0.00 3.51
2429 2452 1.470890 CTCGTTGACCTCTCTCAGACC 59.529 57.143 0.00 0.00 0.00 3.85
2430 2453 0.528470 CGTTGACCTCTCTCAGACCC 59.472 60.000 0.00 0.00 0.00 4.46
2431 2454 0.899019 GTTGACCTCTCTCAGACCCC 59.101 60.000 0.00 0.00 0.00 4.95
2432 2455 0.787084 TTGACCTCTCTCAGACCCCT 59.213 55.000 0.00 0.00 0.00 4.79
2433 2456 0.333312 TGACCTCTCTCAGACCCCTC 59.667 60.000 0.00 0.00 0.00 4.30
2434 2457 0.629058 GACCTCTCTCAGACCCCTCT 59.371 60.000 0.00 0.00 0.00 3.69
2435 2458 1.006639 GACCTCTCTCAGACCCCTCTT 59.993 57.143 0.00 0.00 0.00 2.85
2436 2459 1.272985 ACCTCTCTCAGACCCCTCTTG 60.273 57.143 0.00 0.00 0.00 3.02
2437 2460 0.823460 CTCTCTCAGACCCCTCTTGC 59.177 60.000 0.00 0.00 0.00 4.01
2438 2461 0.967887 TCTCTCAGACCCCTCTTGCG 60.968 60.000 0.00 0.00 0.00 4.85
2439 2462 2.125350 CTCAGACCCCTCTTGCGC 60.125 66.667 0.00 0.00 0.00 6.09
2440 2463 3.997064 CTCAGACCCCTCTTGCGCG 62.997 68.421 0.00 0.00 0.00 6.86
2450 2473 4.362946 CTTGCGCGCGTCCGAAAA 62.363 61.111 32.35 12.20 36.29 2.29
2451 2474 4.653252 TTGCGCGCGTCCGAAAAC 62.653 61.111 32.35 12.41 36.29 2.43
2456 2479 4.130281 CGCGTCCGAAAACGGCTC 62.130 66.667 0.00 0.00 42.81 4.70
2457 2480 3.785499 GCGTCCGAAAACGGCTCC 61.785 66.667 3.67 0.00 42.81 4.70
2458 2481 3.475774 CGTCCGAAAACGGCTCCG 61.476 66.667 6.79 6.79 46.03 4.63
2459 2482 2.048877 GTCCGAAAACGGCTCCGA 60.049 61.111 15.95 0.00 42.83 4.55
2460 2483 1.665599 GTCCGAAAACGGCTCCGAA 60.666 57.895 15.95 0.00 42.83 4.30
2461 2484 1.665599 TCCGAAAACGGCTCCGAAC 60.666 57.895 15.95 2.64 42.83 3.95
2462 2485 2.674084 CCGAAAACGGCTCCGAACC 61.674 63.158 15.95 0.69 42.83 3.62
2463 2486 2.674084 CGAAAACGGCTCCGAACCC 61.674 63.158 15.95 1.03 42.83 4.11
2471 2494 4.065281 CTCCGAACCCGAACCGCT 62.065 66.667 0.00 0.00 38.22 5.52
2472 2495 3.984200 CTCCGAACCCGAACCGCTC 62.984 68.421 0.00 0.00 38.22 5.03
2473 2496 4.367023 CCGAACCCGAACCGCTCA 62.367 66.667 0.00 0.00 38.22 4.26
2474 2497 2.809601 CGAACCCGAACCGCTCAG 60.810 66.667 0.00 0.00 38.22 3.35
2475 2498 2.342648 GAACCCGAACCGCTCAGT 59.657 61.111 0.00 0.00 0.00 3.41
2476 2499 1.737008 GAACCCGAACCGCTCAGTC 60.737 63.158 0.00 0.00 0.00 3.51
2477 2500 2.430382 GAACCCGAACCGCTCAGTCA 62.430 60.000 0.00 0.00 0.00 3.41
2478 2501 1.827399 AACCCGAACCGCTCAGTCAT 61.827 55.000 0.00 0.00 0.00 3.06
2479 2502 1.519455 CCCGAACCGCTCAGTCATC 60.519 63.158 0.00 0.00 0.00 2.92
2480 2503 1.215382 CCGAACCGCTCAGTCATCA 59.785 57.895 0.00 0.00 0.00 3.07
2481 2504 1.078759 CCGAACCGCTCAGTCATCAC 61.079 60.000 0.00 0.00 0.00 3.06
2482 2505 1.078759 CGAACCGCTCAGTCATCACC 61.079 60.000 0.00 0.00 0.00 4.02
2483 2506 1.078759 GAACCGCTCAGTCATCACCG 61.079 60.000 0.00 0.00 0.00 4.94
2484 2507 1.816863 AACCGCTCAGTCATCACCGT 61.817 55.000 0.00 0.00 0.00 4.83
2485 2508 1.079819 CCGCTCAGTCATCACCGTT 60.080 57.895 0.00 0.00 0.00 4.44
2486 2509 1.354337 CCGCTCAGTCATCACCGTTG 61.354 60.000 0.00 0.00 0.00 4.10
2487 2510 1.790387 GCTCAGTCATCACCGTTGC 59.210 57.895 0.00 0.00 0.00 4.17
2488 2511 0.950555 GCTCAGTCATCACCGTTGCA 60.951 55.000 0.00 0.00 0.00 4.08
2489 2512 1.730501 CTCAGTCATCACCGTTGCAT 58.269 50.000 0.00 0.00 0.00 3.96
2490 2513 2.079158 CTCAGTCATCACCGTTGCATT 58.921 47.619 0.00 0.00 0.00 3.56
2491 2514 2.076100 TCAGTCATCACCGTTGCATTC 58.924 47.619 0.00 0.00 0.00 2.67
2492 2515 1.805943 CAGTCATCACCGTTGCATTCA 59.194 47.619 0.00 0.00 0.00 2.57
2493 2516 2.079158 AGTCATCACCGTTGCATTCAG 58.921 47.619 0.00 0.00 0.00 3.02
2494 2517 2.076100 GTCATCACCGTTGCATTCAGA 58.924 47.619 0.00 0.00 0.00 3.27
2495 2518 2.679837 GTCATCACCGTTGCATTCAGAT 59.320 45.455 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
218 219 0.450983 GCTCCTTCATGTGCTTGCTC 59.549 55.000 0.00 0.00 0.00 4.26
401 405 2.297033 CCTTGGTTCTGTCCAAACATGG 59.703 50.000 0.00 0.00 45.26 3.66
935 946 4.694509 GCAGAGTTCACATGAAGAACATCT 59.305 41.667 25.92 22.11 45.93 2.90
937 948 4.649692 AGCAGAGTTCACATGAAGAACAT 58.350 39.130 25.92 16.73 45.93 2.71
976 987 4.210331 GGGAAGATGACCTGCATGTAAAT 58.790 43.478 0.00 0.00 37.34 1.40
993 1004 0.394899 GCTCCTGGAACATGGGGAAG 60.395 60.000 0.00 0.00 38.20 3.46
1105 1116 0.318120 TCTGCATCAGCTGTCGAACA 59.682 50.000 14.67 5.64 42.74 3.18
1208 1219 2.298163 ACGTACTCAGTCGGGAAATGTT 59.702 45.455 0.00 0.00 0.00 2.71
1220 1231 0.247576 CGTAGTCGCCACGTACTCAG 60.248 60.000 0.00 0.00 34.74 3.35
1407 1423 3.306019 CCACTTTGCAAAGTATCCCAACC 60.306 47.826 37.19 0.00 46.89 3.77
1413 1429 3.826729 ACCTTCCCACTTTGCAAAGTATC 59.173 43.478 37.19 0.00 46.89 2.24
1495 1511 6.039270 TGAAATCTTCATTCGTCAACCAGTTT 59.961 34.615 0.00 0.00 34.08 2.66
1554 1570 9.213799 ACTTCTTGATGAATTTCTTGACTACTC 57.786 33.333 0.00 0.00 33.71 2.59
1557 1573 9.996554 TGTACTTCTTGATGAATTTCTTGACTA 57.003 29.630 0.00 0.00 33.71 2.59
1558 1574 8.908786 TGTACTTCTTGATGAATTTCTTGACT 57.091 30.769 0.00 0.00 33.71 3.41
1631 1647 3.111741 AGGTACCTTACATTCCTCGGT 57.888 47.619 9.21 0.00 0.00 4.69
1650 1666 9.573133 AACATAGTTTTGACAAGAACAAAGAAG 57.427 29.630 12.59 0.00 38.25 2.85
1651 1667 9.567848 GAACATAGTTTTGACAAGAACAAAGAA 57.432 29.630 12.59 0.00 38.25 2.52
1704 1723 3.881688 CACCACTACATACTAGGCTACGT 59.118 47.826 0.00 0.00 0.00 3.57
1766 1785 4.196193 CGCCTAAATAGGTTCACATCCAA 58.804 43.478 8.24 0.00 45.42 3.53
2153 2176 7.361457 GGGCGTTACATTAGTTGTACTGAAATT 60.361 37.037 0.00 0.00 40.53 1.82
2171 2194 0.176449 AGTTGTATCCGGGGCGTTAC 59.824 55.000 0.00 0.00 0.00 2.50
2172 2195 0.903942 AAGTTGTATCCGGGGCGTTA 59.096 50.000 0.00 0.00 0.00 3.18
2173 2196 0.037160 AAAGTTGTATCCGGGGCGTT 59.963 50.000 0.00 0.00 0.00 4.84
2174 2197 0.392060 GAAAGTTGTATCCGGGGCGT 60.392 55.000 0.00 0.00 0.00 5.68
2175 2198 1.093496 GGAAAGTTGTATCCGGGGCG 61.093 60.000 0.00 0.00 0.00 6.13
2176 2199 0.034863 TGGAAAGTTGTATCCGGGGC 60.035 55.000 0.00 0.00 38.63 5.80
2177 2200 2.729028 ATGGAAAGTTGTATCCGGGG 57.271 50.000 0.00 0.00 38.63 5.73
2178 2201 4.451096 CGAATATGGAAAGTTGTATCCGGG 59.549 45.833 0.00 0.00 38.63 5.73
2179 2202 5.054477 ACGAATATGGAAAGTTGTATCCGG 58.946 41.667 0.00 0.00 38.63 5.14
2180 2203 7.437267 AGTTACGAATATGGAAAGTTGTATCCG 59.563 37.037 0.00 0.00 38.63 4.18
2181 2204 8.658499 AGTTACGAATATGGAAAGTTGTATCC 57.342 34.615 0.00 0.00 36.21 2.59
2182 2205 8.762426 GGAGTTACGAATATGGAAAGTTGTATC 58.238 37.037 0.00 0.00 0.00 2.24
2183 2206 8.262227 TGGAGTTACGAATATGGAAAGTTGTAT 58.738 33.333 0.00 0.00 0.00 2.29
2184 2207 7.613585 TGGAGTTACGAATATGGAAAGTTGTA 58.386 34.615 0.00 0.00 0.00 2.41
2185 2208 6.469410 TGGAGTTACGAATATGGAAAGTTGT 58.531 36.000 0.00 0.00 0.00 3.32
2186 2209 6.978343 TGGAGTTACGAATATGGAAAGTTG 57.022 37.500 0.00 0.00 0.00 3.16
2187 2210 6.373495 GGTTGGAGTTACGAATATGGAAAGTT 59.627 38.462 0.00 0.00 0.00 2.66
2188 2211 5.878669 GGTTGGAGTTACGAATATGGAAAGT 59.121 40.000 0.00 0.00 0.00 2.66
2189 2212 5.296035 GGGTTGGAGTTACGAATATGGAAAG 59.704 44.000 0.00 0.00 0.00 2.62
2190 2213 5.045432 AGGGTTGGAGTTACGAATATGGAAA 60.045 40.000 0.00 0.00 0.00 3.13
2191 2214 4.472108 AGGGTTGGAGTTACGAATATGGAA 59.528 41.667 0.00 0.00 0.00 3.53
2192 2215 4.035112 AGGGTTGGAGTTACGAATATGGA 58.965 43.478 0.00 0.00 0.00 3.41
2193 2216 4.417426 AGGGTTGGAGTTACGAATATGG 57.583 45.455 0.00 0.00 0.00 2.74
2194 2217 4.035208 GCAAGGGTTGGAGTTACGAATATG 59.965 45.833 0.00 0.00 0.00 1.78
2195 2218 4.196971 GCAAGGGTTGGAGTTACGAATAT 58.803 43.478 0.00 0.00 0.00 1.28
2196 2219 3.602483 GCAAGGGTTGGAGTTACGAATA 58.398 45.455 0.00 0.00 0.00 1.75
2197 2220 2.433436 GCAAGGGTTGGAGTTACGAAT 58.567 47.619 0.00 0.00 0.00 3.34
2198 2221 1.543871 GGCAAGGGTTGGAGTTACGAA 60.544 52.381 0.00 0.00 0.00 3.85
2199 2222 0.035739 GGCAAGGGTTGGAGTTACGA 59.964 55.000 0.00 0.00 0.00 3.43
2200 2223 0.036306 AGGCAAGGGTTGGAGTTACG 59.964 55.000 0.00 0.00 0.00 3.18
2201 2224 2.287977 AAGGCAAGGGTTGGAGTTAC 57.712 50.000 0.00 0.00 0.00 2.50
2202 2225 3.227614 GAAAAGGCAAGGGTTGGAGTTA 58.772 45.455 0.00 0.00 0.00 2.24
2203 2226 2.039418 GAAAAGGCAAGGGTTGGAGTT 58.961 47.619 0.00 0.00 0.00 3.01
2204 2227 1.704641 GAAAAGGCAAGGGTTGGAGT 58.295 50.000 0.00 0.00 0.00 3.85
2205 2228 0.969149 GGAAAAGGCAAGGGTTGGAG 59.031 55.000 0.00 0.00 0.00 3.86
2206 2229 0.825840 CGGAAAAGGCAAGGGTTGGA 60.826 55.000 0.00 0.00 0.00 3.53
2207 2230 1.665442 CGGAAAAGGCAAGGGTTGG 59.335 57.895 0.00 0.00 0.00 3.77
2208 2231 0.825840 TCCGGAAAAGGCAAGGGTTG 60.826 55.000 0.00 0.00 0.00 3.77
2209 2232 0.539669 CTCCGGAAAAGGCAAGGGTT 60.540 55.000 5.23 0.00 0.00 4.11
2210 2233 1.074951 CTCCGGAAAAGGCAAGGGT 59.925 57.895 5.23 0.00 0.00 4.34
2211 2234 0.034089 ATCTCCGGAAAAGGCAAGGG 60.034 55.000 5.23 0.00 0.00 3.95
2212 2235 1.098050 CATCTCCGGAAAAGGCAAGG 58.902 55.000 5.23 0.00 0.00 3.61
2213 2236 0.453390 GCATCTCCGGAAAAGGCAAG 59.547 55.000 15.90 0.00 0.00 4.01
2214 2237 1.305219 CGCATCTCCGGAAAAGGCAA 61.305 55.000 19.41 0.00 0.00 4.52
2215 2238 1.745115 CGCATCTCCGGAAAAGGCA 60.745 57.895 19.41 0.00 0.00 4.75
2216 2239 0.815615 ATCGCATCTCCGGAAAAGGC 60.816 55.000 5.23 9.43 0.00 4.35
2217 2240 2.526304 TATCGCATCTCCGGAAAAGG 57.474 50.000 5.23 0.00 0.00 3.11
2218 2241 3.393800 ACATATCGCATCTCCGGAAAAG 58.606 45.455 5.23 0.00 0.00 2.27
2219 2242 3.469008 ACATATCGCATCTCCGGAAAA 57.531 42.857 5.23 0.00 0.00 2.29
2220 2243 3.469008 AACATATCGCATCTCCGGAAA 57.531 42.857 5.23 0.00 0.00 3.13
2221 2244 4.801330 ATAACATATCGCATCTCCGGAA 57.199 40.909 5.23 0.00 0.00 4.30
2222 2245 4.801330 AATAACATATCGCATCTCCGGA 57.199 40.909 2.93 2.93 0.00 5.14
2223 2246 4.330074 GGAAATAACATATCGCATCTCCGG 59.670 45.833 0.00 0.00 0.00 5.14
2224 2247 5.171476 AGGAAATAACATATCGCATCTCCG 58.829 41.667 0.00 0.00 0.00 4.63
2225 2248 5.582665 GGAGGAAATAACATATCGCATCTCC 59.417 44.000 0.00 0.00 0.00 3.71
2226 2249 5.289675 CGGAGGAAATAACATATCGCATCTC 59.710 44.000 0.00 0.00 0.00 2.75
2227 2250 5.171476 CGGAGGAAATAACATATCGCATCT 58.829 41.667 0.00 0.00 0.00 2.90
2228 2251 4.929808 ACGGAGGAAATAACATATCGCATC 59.070 41.667 0.00 0.00 0.00 3.91
2229 2252 4.690748 CACGGAGGAAATAACATATCGCAT 59.309 41.667 0.00 0.00 0.00 4.73
2230 2253 4.055360 CACGGAGGAAATAACATATCGCA 58.945 43.478 0.00 0.00 0.00 5.10
2231 2254 3.432252 CCACGGAGGAAATAACATATCGC 59.568 47.826 0.00 0.00 41.22 4.58
2232 2255 4.628074 ACCACGGAGGAAATAACATATCG 58.372 43.478 2.94 0.00 41.22 2.92
2233 2256 5.238650 CCAACCACGGAGGAAATAACATATC 59.761 44.000 2.94 0.00 41.22 1.63
2234 2257 5.130350 CCAACCACGGAGGAAATAACATAT 58.870 41.667 2.94 0.00 41.22 1.78
2235 2258 4.519213 CCAACCACGGAGGAAATAACATA 58.481 43.478 2.94 0.00 41.22 2.29
2236 2259 3.352648 CCAACCACGGAGGAAATAACAT 58.647 45.455 2.94 0.00 41.22 2.71
2237 2260 2.553466 CCCAACCACGGAGGAAATAACA 60.553 50.000 2.94 0.00 41.22 2.41
2238 2261 2.089201 CCCAACCACGGAGGAAATAAC 58.911 52.381 2.94 0.00 41.22 1.89
2239 2262 1.706305 ACCCAACCACGGAGGAAATAA 59.294 47.619 2.94 0.00 41.22 1.40
2240 2263 1.364269 ACCCAACCACGGAGGAAATA 58.636 50.000 2.94 0.00 41.22 1.40
2241 2264 0.481128 AACCCAACCACGGAGGAAAT 59.519 50.000 2.94 0.00 41.22 2.17
2242 2265 0.259356 AAACCCAACCACGGAGGAAA 59.741 50.000 2.94 0.00 41.22 3.13
2243 2266 0.259356 AAAACCCAACCACGGAGGAA 59.741 50.000 2.94 0.00 41.22 3.36
2244 2267 0.466555 CAAAACCCAACCACGGAGGA 60.467 55.000 2.94 0.00 41.22 3.71
2245 2268 0.753848 ACAAAACCCAACCACGGAGG 60.754 55.000 0.00 0.00 45.67 4.30
2246 2269 0.666374 GACAAAACCCAACCACGGAG 59.334 55.000 0.00 0.00 0.00 4.63
2247 2270 0.256464 AGACAAAACCCAACCACGGA 59.744 50.000 0.00 0.00 0.00 4.69
2248 2271 1.107945 AAGACAAAACCCAACCACGG 58.892 50.000 0.00 0.00 0.00 4.94
2249 2272 2.926838 CAAAAGACAAAACCCAACCACG 59.073 45.455 0.00 0.00 0.00 4.94
2250 2273 3.932822 ACAAAAGACAAAACCCAACCAC 58.067 40.909 0.00 0.00 0.00 4.16
2251 2274 4.625607 AACAAAAGACAAAACCCAACCA 57.374 36.364 0.00 0.00 0.00 3.67
2252 2275 5.694816 CAAAACAAAAGACAAAACCCAACC 58.305 37.500 0.00 0.00 0.00 3.77
2253 2276 5.150683 GCAAAACAAAAGACAAAACCCAAC 58.849 37.500 0.00 0.00 0.00 3.77
2254 2277 4.083802 CGCAAAACAAAAGACAAAACCCAA 60.084 37.500 0.00 0.00 0.00 4.12
2255 2278 3.433615 CGCAAAACAAAAGACAAAACCCA 59.566 39.130 0.00 0.00 0.00 4.51
2256 2279 3.433957 ACGCAAAACAAAAGACAAAACCC 59.566 39.130 0.00 0.00 0.00 4.11
2257 2280 4.655440 ACGCAAAACAAAAGACAAAACC 57.345 36.364 0.00 0.00 0.00 3.27
2258 2281 5.335689 CACAACGCAAAACAAAAGACAAAAC 59.664 36.000 0.00 0.00 0.00 2.43
2259 2282 5.006746 ACACAACGCAAAACAAAAGACAAAA 59.993 32.000 0.00 0.00 0.00 2.44
2260 2283 4.508124 ACACAACGCAAAACAAAAGACAAA 59.492 33.333 0.00 0.00 0.00 2.83
2261 2284 4.051922 ACACAACGCAAAACAAAAGACAA 58.948 34.783 0.00 0.00 0.00 3.18
2262 2285 3.643763 ACACAACGCAAAACAAAAGACA 58.356 36.364 0.00 0.00 0.00 3.41
2263 2286 4.149046 TGAACACAACGCAAAACAAAAGAC 59.851 37.500 0.00 0.00 0.00 3.01
2264 2287 4.299155 TGAACACAACGCAAAACAAAAGA 58.701 34.783 0.00 0.00 0.00 2.52
2265 2288 4.637574 TGAACACAACGCAAAACAAAAG 57.362 36.364 0.00 0.00 0.00 2.27
2266 2289 4.449068 ACATGAACACAACGCAAAACAAAA 59.551 33.333 0.00 0.00 0.00 2.44
2267 2290 3.990469 ACATGAACACAACGCAAAACAAA 59.010 34.783 0.00 0.00 0.00 2.83
2268 2291 3.579709 ACATGAACACAACGCAAAACAA 58.420 36.364 0.00 0.00 0.00 2.83
2269 2292 3.175152 GACATGAACACAACGCAAAACA 58.825 40.909 0.00 0.00 0.00 2.83
2270 2293 3.175152 TGACATGAACACAACGCAAAAC 58.825 40.909 0.00 0.00 0.00 2.43
2271 2294 3.494045 TGACATGAACACAACGCAAAA 57.506 38.095 0.00 0.00 0.00 2.44
2272 2295 3.370276 CATGACATGAACACAACGCAAA 58.630 40.909 10.03 0.00 0.00 3.68
2273 2296 2.857874 GCATGACATGAACACAACGCAA 60.858 45.455 19.76 0.00 0.00 4.85
2274 2297 1.334870 GCATGACATGAACACAACGCA 60.335 47.619 19.76 0.00 0.00 5.24
2275 2298 1.330306 GCATGACATGAACACAACGC 58.670 50.000 19.76 0.00 0.00 4.84
2276 2299 2.684754 TGCATGACATGAACACAACG 57.315 45.000 19.76 0.00 0.00 4.10
2277 2300 4.083164 TGAGATGCATGACATGAACACAAC 60.083 41.667 19.76 6.31 39.84 3.32
2278 2301 4.073549 TGAGATGCATGACATGAACACAA 58.926 39.130 19.76 0.00 39.84 3.33
2279 2302 3.677190 TGAGATGCATGACATGAACACA 58.323 40.909 19.76 7.71 39.84 3.72
2280 2303 4.575236 AGATGAGATGCATGACATGAACAC 59.425 41.667 19.76 6.94 39.84 3.32
2281 2304 4.777463 AGATGAGATGCATGACATGAACA 58.223 39.130 19.76 8.78 39.84 3.18
2282 2305 4.814771 TGAGATGAGATGCATGACATGAAC 59.185 41.667 19.76 8.86 39.84 3.18
2283 2306 5.031066 TGAGATGAGATGCATGACATGAA 57.969 39.130 19.76 9.39 39.84 2.57
2284 2307 4.682778 TGAGATGAGATGCATGACATGA 57.317 40.909 19.76 4.94 39.84 3.07
2285 2308 5.064071 GCTATGAGATGAGATGCATGACATG 59.936 44.000 16.55 11.27 39.84 3.21
2286 2309 5.179533 GCTATGAGATGAGATGCATGACAT 58.820 41.667 2.46 9.48 43.54 3.06
2287 2310 4.039973 TGCTATGAGATGAGATGCATGACA 59.960 41.667 2.46 4.19 37.34 3.58
2288 2311 4.566987 TGCTATGAGATGAGATGCATGAC 58.433 43.478 2.46 0.00 37.34 3.06
2289 2312 4.884668 TGCTATGAGATGAGATGCATGA 57.115 40.909 2.46 0.00 37.34 3.07
2290 2313 5.178797 TGATGCTATGAGATGAGATGCATG 58.821 41.667 2.46 0.00 39.36 4.06
2291 2314 5.422214 TGATGCTATGAGATGAGATGCAT 57.578 39.130 0.00 0.00 41.51 3.96
2292 2315 4.884668 TGATGCTATGAGATGAGATGCA 57.115 40.909 0.00 0.00 0.00 3.96
2293 2316 4.034626 GCATGATGCTATGAGATGAGATGC 59.965 45.833 10.72 0.00 40.96 3.91
2294 2317 4.268884 CGCATGATGCTATGAGATGAGATG 59.731 45.833 16.17 0.00 42.25 2.90
2295 2318 4.434520 CGCATGATGCTATGAGATGAGAT 58.565 43.478 16.17 0.00 42.25 2.75
2296 2319 3.846360 CGCATGATGCTATGAGATGAGA 58.154 45.455 16.17 0.00 42.25 3.27
2297 2320 2.348971 GCGCATGATGCTATGAGATGAG 59.651 50.000 16.17 0.00 42.25 2.90
2298 2321 2.289195 TGCGCATGATGCTATGAGATGA 60.289 45.455 16.17 0.00 42.25 2.92
2299 2322 2.073816 TGCGCATGATGCTATGAGATG 58.926 47.619 16.17 0.00 42.25 2.90
2300 2323 2.467566 TGCGCATGATGCTATGAGAT 57.532 45.000 16.17 0.00 42.25 2.75
2301 2324 2.467566 ATGCGCATGATGCTATGAGA 57.532 45.000 24.69 0.00 42.25 3.27
2302 2325 2.851534 CAATGCGCATGATGCTATGAG 58.148 47.619 26.09 0.11 42.25 2.90
2303 2326 1.068816 GCAATGCGCATGATGCTATGA 60.069 47.619 30.49 0.00 42.25 2.15
2304 2327 1.336877 GCAATGCGCATGATGCTATG 58.663 50.000 30.49 21.41 42.25 2.23
2305 2328 3.786809 GCAATGCGCATGATGCTAT 57.213 47.368 30.49 10.80 42.25 2.97
2328 2351 9.874459 ACGGCTACGAGTTTTATGAAAACATGC 62.874 40.741 15.18 11.01 46.71 4.06
2329 2352 6.619874 ACGGCTACGAGTTTTATGAAAACATG 60.620 38.462 15.18 9.93 46.71 3.21
2330 2353 5.410439 ACGGCTACGAGTTTTATGAAAACAT 59.590 36.000 15.18 5.07 46.71 2.71
2331 2354 4.751098 ACGGCTACGAGTTTTATGAAAACA 59.249 37.500 15.18 0.00 46.71 2.83
2332 2355 5.273523 ACGGCTACGAGTTTTATGAAAAC 57.726 39.130 6.70 6.70 45.76 2.43
2333 2356 5.927954 AACGGCTACGAGTTTTATGAAAA 57.072 34.783 0.00 0.00 44.60 2.29
2334 2357 5.681880 CAAACGGCTACGAGTTTTATGAAA 58.318 37.500 0.00 0.00 44.60 2.69
2335 2358 4.377635 GCAAACGGCTACGAGTTTTATGAA 60.378 41.667 0.00 0.00 44.60 2.57
2336 2359 3.123959 GCAAACGGCTACGAGTTTTATGA 59.876 43.478 0.00 0.00 44.60 2.15
2337 2360 3.120477 TGCAAACGGCTACGAGTTTTATG 60.120 43.478 0.00 0.00 45.15 1.90
2338 2361 3.068560 TGCAAACGGCTACGAGTTTTAT 58.931 40.909 0.00 0.00 45.15 1.40
2339 2362 2.477375 CTGCAAACGGCTACGAGTTTTA 59.523 45.455 0.00 0.00 45.15 1.52
2340 2363 1.263217 CTGCAAACGGCTACGAGTTTT 59.737 47.619 0.00 0.00 45.15 2.43
2341 2364 0.865769 CTGCAAACGGCTACGAGTTT 59.134 50.000 0.00 0.00 45.15 2.66
2342 2365 0.249741 ACTGCAAACGGCTACGAGTT 60.250 50.000 0.00 0.00 45.15 3.01
2343 2366 0.249741 AACTGCAAACGGCTACGAGT 60.250 50.000 0.00 0.00 45.15 4.18
2344 2367 0.163788 CAACTGCAAACGGCTACGAG 59.836 55.000 0.00 0.00 45.15 4.18
2345 2368 1.837538 GCAACTGCAAACGGCTACGA 61.838 55.000 0.00 0.00 45.15 3.43
2346 2369 1.440353 GCAACTGCAAACGGCTACG 60.440 57.895 0.00 0.00 45.15 3.51
2347 2370 1.081442 GGCAACTGCAAACGGCTAC 60.081 57.895 3.76 0.00 45.15 3.58
2348 2371 2.265182 GGGCAACTGCAAACGGCTA 61.265 57.895 3.76 0.00 45.15 3.93
2349 2372 3.605664 GGGCAACTGCAAACGGCT 61.606 61.111 3.76 0.00 45.15 5.52
2350 2373 2.642996 AAAGGGCAACTGCAAACGGC 62.643 55.000 3.76 0.00 44.36 5.68
2351 2374 0.597377 GAAAGGGCAACTGCAAACGG 60.597 55.000 3.76 0.00 44.36 4.44
2352 2375 0.385390 AGAAAGGGCAACTGCAAACG 59.615 50.000 3.76 0.00 44.36 3.60
2353 2376 1.683385 AGAGAAAGGGCAACTGCAAAC 59.317 47.619 3.76 0.00 44.36 2.93
2354 2377 1.956477 GAGAGAAAGGGCAACTGCAAA 59.044 47.619 3.76 0.00 44.36 3.68
2355 2378 1.143684 AGAGAGAAAGGGCAACTGCAA 59.856 47.619 3.76 0.00 44.36 4.08
2356 2379 0.767375 AGAGAGAAAGGGCAACTGCA 59.233 50.000 3.76 0.00 44.36 4.41
2357 2380 1.902938 AAGAGAGAAAGGGCAACTGC 58.097 50.000 0.00 0.00 41.14 4.40
2358 2381 2.030451 GCAAAGAGAGAAAGGGCAACTG 60.030 50.000 0.00 0.00 0.00 3.16
2359 2382 2.234143 GCAAAGAGAGAAAGGGCAACT 58.766 47.619 0.00 0.00 0.00 3.16
2360 2383 1.270826 GGCAAAGAGAGAAAGGGCAAC 59.729 52.381 0.00 0.00 0.00 4.17
2361 2384 1.145738 AGGCAAAGAGAGAAAGGGCAA 59.854 47.619 0.00 0.00 0.00 4.52
2362 2385 0.773644 AGGCAAAGAGAGAAAGGGCA 59.226 50.000 0.00 0.00 0.00 5.36
2363 2386 1.815613 GAAGGCAAAGAGAGAAAGGGC 59.184 52.381 0.00 0.00 0.00 5.19
2364 2387 2.079925 CGAAGGCAAAGAGAGAAAGGG 58.920 52.381 0.00 0.00 0.00 3.95
2365 2388 2.772287 ACGAAGGCAAAGAGAGAAAGG 58.228 47.619 0.00 0.00 0.00 3.11
2366 2389 3.561725 ACAACGAAGGCAAAGAGAGAAAG 59.438 43.478 0.00 0.00 0.00 2.62
2367 2390 3.541632 ACAACGAAGGCAAAGAGAGAAA 58.458 40.909 0.00 0.00 0.00 2.52
2368 2391 3.131396 GACAACGAAGGCAAAGAGAGAA 58.869 45.455 0.00 0.00 0.00 2.87
2369 2392 2.102420 TGACAACGAAGGCAAAGAGAGA 59.898 45.455 0.00 0.00 0.00 3.10
2370 2393 2.483876 TGACAACGAAGGCAAAGAGAG 58.516 47.619 0.00 0.00 0.00 3.20
2371 2394 2.613026 TGACAACGAAGGCAAAGAGA 57.387 45.000 0.00 0.00 0.00 3.10
2372 2395 3.904136 AATGACAACGAAGGCAAAGAG 57.096 42.857 0.00 0.00 0.00 2.85
2373 2396 4.142271 ACAAAATGACAACGAAGGCAAAGA 60.142 37.500 0.00 0.00 0.00 2.52
2374 2397 4.111916 ACAAAATGACAACGAAGGCAAAG 58.888 39.130 0.00 0.00 0.00 2.77
2375 2398 4.109050 GACAAAATGACAACGAAGGCAAA 58.891 39.130 0.00 0.00 0.00 3.68
2376 2399 3.129462 TGACAAAATGACAACGAAGGCAA 59.871 39.130 0.00 0.00 0.00 4.52
2377 2400 2.685388 TGACAAAATGACAACGAAGGCA 59.315 40.909 0.00 0.00 0.00 4.75
2378 2401 3.300009 CTGACAAAATGACAACGAAGGC 58.700 45.455 0.00 0.00 0.00 4.35
2379 2402 3.853307 GCCTGACAAAATGACAACGAAGG 60.853 47.826 0.00 0.00 0.00 3.46
2380 2403 3.300009 GCCTGACAAAATGACAACGAAG 58.700 45.455 0.00 0.00 0.00 3.79
2381 2404 2.034053 GGCCTGACAAAATGACAACGAA 59.966 45.455 0.00 0.00 0.00 3.85
2382 2405 1.606668 GGCCTGACAAAATGACAACGA 59.393 47.619 0.00 0.00 0.00 3.85
2383 2406 1.335872 GGGCCTGACAAAATGACAACG 60.336 52.381 0.84 0.00 0.00 4.10
2384 2407 1.963515 AGGGCCTGACAAAATGACAAC 59.036 47.619 4.50 0.00 0.00 3.32
2385 2408 2.364970 CAAGGGCCTGACAAAATGACAA 59.635 45.455 6.92 0.00 0.00 3.18
2386 2409 1.962807 CAAGGGCCTGACAAAATGACA 59.037 47.619 6.92 0.00 0.00 3.58
2387 2410 1.963515 ACAAGGGCCTGACAAAATGAC 59.036 47.619 6.92 0.00 0.00 3.06
2388 2411 2.238521 GACAAGGGCCTGACAAAATGA 58.761 47.619 6.92 0.00 0.00 2.57
2389 2412 1.273327 GGACAAGGGCCTGACAAAATG 59.727 52.381 6.92 1.32 0.00 2.32
2390 2413 1.147817 AGGACAAGGGCCTGACAAAAT 59.852 47.619 6.92 0.00 33.59 1.82
2391 2414 0.555769 AGGACAAGGGCCTGACAAAA 59.444 50.000 6.92 0.00 33.59 2.44
2392 2415 0.110486 GAGGACAAGGGCCTGACAAA 59.890 55.000 6.92 0.00 35.44 2.83
2393 2416 1.761174 GAGGACAAGGGCCTGACAA 59.239 57.895 6.92 0.00 35.44 3.18
2394 2417 2.583441 CGAGGACAAGGGCCTGACA 61.583 63.158 6.92 0.00 35.44 3.58
2395 2418 2.113243 AACGAGGACAAGGGCCTGAC 62.113 60.000 6.92 0.98 35.44 3.51
2396 2419 1.841556 AACGAGGACAAGGGCCTGA 60.842 57.895 6.92 0.00 35.44 3.86
2397 2420 1.672356 CAACGAGGACAAGGGCCTG 60.672 63.158 6.92 3.83 35.44 4.85
2398 2421 1.841556 TCAACGAGGACAAGGGCCT 60.842 57.895 0.00 0.00 38.81 5.19
2399 2422 1.671379 GTCAACGAGGACAAGGGCC 60.671 63.158 0.00 0.00 37.73 5.80
2400 2423 1.671379 GGTCAACGAGGACAAGGGC 60.671 63.158 11.98 0.00 39.59 5.19
2401 2424 0.037232 GAGGTCAACGAGGACAAGGG 60.037 60.000 11.98 0.00 39.59 3.95
2402 2425 0.969894 AGAGGTCAACGAGGACAAGG 59.030 55.000 11.98 0.00 39.59 3.61
2403 2426 1.889829 AGAGAGGTCAACGAGGACAAG 59.110 52.381 11.98 0.00 39.59 3.16
2404 2427 1.887198 GAGAGAGGTCAACGAGGACAA 59.113 52.381 11.98 0.00 39.59 3.18
2405 2428 1.202891 TGAGAGAGGTCAACGAGGACA 60.203 52.381 11.98 0.00 39.59 4.02
2406 2429 1.470890 CTGAGAGAGGTCAACGAGGAC 59.529 57.143 0.00 0.00 37.06 3.85
2407 2430 1.351350 TCTGAGAGAGGTCAACGAGGA 59.649 52.381 0.00 0.00 0.00 3.71
2408 2431 1.470890 GTCTGAGAGAGGTCAACGAGG 59.529 57.143 0.00 0.00 0.00 4.63
2409 2432 1.470890 GGTCTGAGAGAGGTCAACGAG 59.529 57.143 0.00 0.00 0.00 4.18
2410 2433 1.535833 GGTCTGAGAGAGGTCAACGA 58.464 55.000 0.00 0.00 0.00 3.85
2411 2434 0.528470 GGGTCTGAGAGAGGTCAACG 59.472 60.000 0.00 0.00 0.00 4.10
2412 2435 0.899019 GGGGTCTGAGAGAGGTCAAC 59.101 60.000 0.00 0.00 0.00 3.18
2413 2436 0.787084 AGGGGTCTGAGAGAGGTCAA 59.213 55.000 0.00 0.00 0.00 3.18
2414 2437 0.333312 GAGGGGTCTGAGAGAGGTCA 59.667 60.000 0.00 0.00 0.00 4.02
2415 2438 0.629058 AGAGGGGTCTGAGAGAGGTC 59.371 60.000 0.00 0.00 0.00 3.85
2416 2439 1.089123 AAGAGGGGTCTGAGAGAGGT 58.911 55.000 0.00 0.00 0.00 3.85
2417 2440 1.484038 CAAGAGGGGTCTGAGAGAGG 58.516 60.000 0.00 0.00 0.00 3.69
2418 2441 0.823460 GCAAGAGGGGTCTGAGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
2419 2442 0.967887 CGCAAGAGGGGTCTGAGAGA 60.968 60.000 0.00 0.00 43.02 3.10
2420 2443 1.515020 CGCAAGAGGGGTCTGAGAG 59.485 63.158 0.00 0.00 43.02 3.20
2421 2444 2.650116 GCGCAAGAGGGGTCTGAGA 61.650 63.158 0.30 0.00 43.02 3.27
2422 2445 2.125350 GCGCAAGAGGGGTCTGAG 60.125 66.667 0.30 0.00 43.02 3.35
2423 2446 4.069232 CGCGCAAGAGGGGTCTGA 62.069 66.667 8.75 0.00 43.02 3.27
2433 2456 4.362946 TTTTCGGACGCGCGCAAG 62.363 61.111 32.58 20.87 43.44 4.01
2434 2457 4.653252 GTTTTCGGACGCGCGCAA 62.653 61.111 32.58 14.81 0.00 4.85
2445 2468 2.674084 GGGTTCGGAGCCGTTTTCG 61.674 63.158 8.96 0.00 43.67 3.46
2446 2469 3.260931 GGGTTCGGAGCCGTTTTC 58.739 61.111 8.96 0.00 40.74 2.29
2454 2477 3.984200 GAGCGGTTCGGGTTCGGAG 62.984 68.421 0.00 0.00 36.95 4.63
2455 2478 4.060038 GAGCGGTTCGGGTTCGGA 62.060 66.667 0.00 0.00 36.95 4.55
2456 2479 4.367023 TGAGCGGTTCGGGTTCGG 62.367 66.667 0.00 0.00 36.95 4.30
2457 2480 2.809601 CTGAGCGGTTCGGGTTCG 60.810 66.667 0.00 0.00 37.82 3.95
2458 2481 1.737008 GACTGAGCGGTTCGGGTTC 60.737 63.158 5.64 0.00 36.43 3.62
2459 2482 1.827399 ATGACTGAGCGGTTCGGGTT 61.827 55.000 5.64 0.00 36.43 4.11
2460 2483 2.227089 GATGACTGAGCGGTTCGGGT 62.227 60.000 5.64 0.00 36.43 5.28
2461 2484 1.519455 GATGACTGAGCGGTTCGGG 60.519 63.158 5.64 0.00 36.43 5.14
2462 2485 1.078759 GTGATGACTGAGCGGTTCGG 61.079 60.000 0.00 0.00 38.22 4.30
2463 2486 1.078759 GGTGATGACTGAGCGGTTCG 61.079 60.000 0.00 0.00 0.00 3.95
2464 2487 1.078759 CGGTGATGACTGAGCGGTTC 61.079 60.000 0.00 0.00 0.00 3.62
2465 2488 1.079819 CGGTGATGACTGAGCGGTT 60.080 57.895 0.00 0.00 0.00 4.44
2466 2489 1.816863 AACGGTGATGACTGAGCGGT 61.817 55.000 0.00 0.00 37.40 5.68
2467 2490 1.079819 AACGGTGATGACTGAGCGG 60.080 57.895 0.00 0.00 37.40 5.52
2468 2491 1.959899 GCAACGGTGATGACTGAGCG 61.960 60.000 3.55 0.00 38.97 5.03
2469 2492 0.950555 TGCAACGGTGATGACTGAGC 60.951 55.000 3.55 2.36 35.19 4.26
2470 2493 1.730501 ATGCAACGGTGATGACTGAG 58.269 50.000 3.55 0.00 32.19 3.35
2471 2494 2.076100 GAATGCAACGGTGATGACTGA 58.924 47.619 3.55 0.00 32.19 3.41
2472 2495 1.805943 TGAATGCAACGGTGATGACTG 59.194 47.619 3.55 0.00 34.25 3.51
2473 2496 2.079158 CTGAATGCAACGGTGATGACT 58.921 47.619 3.55 0.00 0.00 3.41
2474 2497 2.076100 TCTGAATGCAACGGTGATGAC 58.924 47.619 3.55 0.00 0.00 3.06
2475 2498 2.470983 TCTGAATGCAACGGTGATGA 57.529 45.000 3.55 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.