Multiple sequence alignment - TraesCS5B01G111400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G111400 chr5B 100.000 3733 0 0 2075 5807 166539120 166542852 0.000000e+00 6894.0
1 TraesCS5B01G111400 chr5B 100.000 1752 0 0 1 1752 166537046 166538797 0.000000e+00 3236.0
2 TraesCS5B01G111400 chr5B 93.651 945 58 2 1 943 33631487 33630543 0.000000e+00 1411.0
3 TraesCS5B01G111400 chr5B 93.277 952 60 4 1 950 145025208 145024259 0.000000e+00 1400.0
4 TraesCS5B01G111400 chr5B 93.179 953 47 6 4843 5785 167101656 167100712 0.000000e+00 1384.0
5 TraesCS5B01G111400 chr5D 97.092 1238 25 5 2075 3309 160065486 160066715 0.000000e+00 2076.0
6 TraesCS5B01G111400 chr5D 97.077 992 23 4 3856 4843 160068185 160069174 0.000000e+00 1666.0
7 TraesCS5B01G111400 chr5D 93.765 818 15 7 966 1752 160064609 160065421 0.000000e+00 1195.0
8 TraesCS5B01G111400 chr5D 92.145 331 21 2 3529 3855 169946035 169945706 4.100000e-126 462.0
9 TraesCS5B01G111400 chr5D 97.222 108 3 0 3355 3462 160067094 160067201 3.570000e-42 183.0
10 TraesCS5B01G111400 chr5D 82.738 168 22 5 5157 5323 44502293 44502132 6.070000e-30 143.0
11 TraesCS5B01G111400 chr5D 92.424 66 2 1 3460 3525 160068124 160068186 2.230000e-14 91.6
12 TraesCS5B01G111400 chr5D 97.059 34 0 1 3391 3424 541804359 541804391 8.130000e-04 56.5
13 TraesCS5B01G111400 chr5D 85.185 54 6 2 4833 4886 44076685 44076736 3.000000e-03 54.7
14 TraesCS5B01G111400 chr5D 100.000 29 0 0 947 975 55698518 55698490 3.000000e-03 54.7
15 TraesCS5B01G111400 chr5A 96.579 994 23 6 3860 4843 260333433 260332441 0.000000e+00 1637.0
16 TraesCS5B01G111400 chr5A 95.767 945 20 6 2075 3018 260335642 260334717 0.000000e+00 1506.0
17 TraesCS5B01G111400 chr5A 94.132 818 15 6 966 1752 260336522 260335707 0.000000e+00 1214.0
18 TraesCS5B01G111400 chr5A 97.222 108 3 0 3355 3462 260334582 260334475 3.570000e-42 183.0
19 TraesCS5B01G111400 chrUn 93.783 949 56 3 1 947 391202112 391203059 0.000000e+00 1423.0
20 TraesCS5B01G111400 chrUn 82.891 339 38 7 5155 5491 235686238 235685918 2.650000e-73 287.0
21 TraesCS5B01G111400 chrUn 87.755 49 5 1 4833 4881 65665217 65665264 8.130000e-04 56.5
22 TraesCS5B01G111400 chr6B 93.862 945 54 4 1 943 617035792 617034850 0.000000e+00 1421.0
23 TraesCS5B01G111400 chr6B 81.287 171 20 8 5155 5323 668516094 668516254 1.700000e-25 128.0
24 TraesCS5B01G111400 chr3D 93.487 952 56 5 1 948 569475796 569474847 0.000000e+00 1410.0
25 TraesCS5B01G111400 chr3D 93.333 945 59 4 1 943 594205432 594206374 0.000000e+00 1393.0
26 TraesCS5B01G111400 chr3D 84.291 783 62 30 4885 5655 146095321 146094588 0.000000e+00 708.0
27 TraesCS5B01G111400 chr3D 100.000 30 0 0 947 976 355894153 355894124 8.130000e-04 56.5
28 TraesCS5B01G111400 chr3D 100.000 29 0 0 947 975 549051450 549051478 3.000000e-03 54.7
29 TraesCS5B01G111400 chr4A 93.559 947 56 4 1 943 738872619 738873564 0.000000e+00 1406.0
30 TraesCS5B01G111400 chr4A 100.000 29 0 0 947 975 712530759 712530787 3.000000e-03 54.7
31 TraesCS5B01G111400 chr6D 93.158 950 61 4 1 947 407491348 407492296 0.000000e+00 1391.0
32 TraesCS5B01G111400 chr6D 92.947 950 65 2 1 948 121190172 121191121 0.000000e+00 1382.0
33 TraesCS5B01G111400 chr6D 93.030 330 18 2 3531 3855 262998794 262999123 1.460000e-130 477.0
34 TraesCS5B01G111400 chr6D 80.435 138 22 5 3358 3493 436457679 436457545 3.700000e-17 100.0
35 TraesCS5B01G111400 chr7D 84.833 778 59 27 4885 5655 2009377 2010102 0.000000e+00 728.0
36 TraesCS5B01G111400 chr7D 82.135 862 102 26 2106 2949 490436728 490437555 0.000000e+00 691.0
37 TraesCS5B01G111400 chr7D 93.976 332 15 2 3528 3855 543385449 543385779 1.120000e-136 497.0
38 TraesCS5B01G111400 chr7D 93.155 336 17 3 3525 3855 438683203 438683537 6.760000e-134 488.0
39 TraesCS5B01G111400 chr7D 93.051 331 17 3 3529 3855 543391002 543391330 4.070000e-131 479.0
40 TraesCS5B01G111400 chr7D 84.290 331 41 8 4437 4757 490438296 490438625 4.370000e-81 313.0
41 TraesCS5B01G111400 chr7D 89.024 164 13 3 1058 1220 490435443 490435602 1.280000e-46 198.0
42 TraesCS5B01G111400 chr7D 81.143 175 23 6 3360 3528 72172807 72172977 1.310000e-26 132.0
43 TraesCS5B01G111400 chr7D 94.286 35 2 0 947 981 576857342 576857376 3.000000e-03 54.7
44 TraesCS5B01G111400 chr2D 83.483 557 67 16 4991 5542 94445898 94446434 4.040000e-136 496.0
45 TraesCS5B01G111400 chr2D 85.294 102 15 0 3388 3489 579585848 579585949 7.960000e-19 106.0
46 TraesCS5B01G111400 chr2D 97.059 34 1 0 4840 4873 632808814 632808781 2.260000e-04 58.4
47 TraesCS5B01G111400 chr1D 93.656 331 17 1 3529 3855 12545665 12545995 5.230000e-135 492.0
48 TraesCS5B01G111400 chr1D 93.072 332 18 2 3529 3855 12540325 12540656 1.130000e-131 481.0
49 TraesCS5B01G111400 chr1D 89.513 267 23 4 5393 5655 75866583 75866318 3.350000e-87 333.0
50 TraesCS5B01G111400 chr1D 89.604 202 20 1 5000 5201 75867256 75867056 7.470000e-64 255.0
51 TraesCS5B01G111400 chr1D 83.333 90 14 1 3398 3487 352546711 352546799 1.340000e-11 82.4
52 TraesCS5B01G111400 chr1D 100.000 30 0 0 947 976 282966485 282966456 8.130000e-04 56.5
53 TraesCS5B01G111400 chr1A 93.656 331 16 2 3529 3855 294080577 294080248 1.880000e-134 490.0
54 TraesCS5B01G111400 chr1A 90.909 44 3 1 4841 4884 49573181 49573139 2.260000e-04 58.4
55 TraesCS5B01G111400 chr1A 100.000 29 0 0 947 975 95863433 95863461 3.000000e-03 54.7
56 TraesCS5B01G111400 chr7A 93.353 331 17 2 3529 3855 353879935 353880264 8.750000e-133 484.0
57 TraesCS5B01G111400 chr7A 86.321 424 41 13 2154 2573 556767500 556767910 4.130000e-121 446.0
58 TraesCS5B01G111400 chr7A 85.526 304 34 6 2650 2949 556768072 556768369 5.650000e-80 309.0
59 TraesCS5B01G111400 chr7A 83.686 331 43 8 4437 4757 556769118 556769447 9.460000e-78 302.0
60 TraesCS5B01G111400 chr7A 79.430 316 50 12 3899 4202 556768715 556769027 5.900000e-50 209.0
61 TraesCS5B01G111400 chr7A 85.638 188 23 3 5358 5541 71053424 71053237 1.650000e-45 195.0
62 TraesCS5B01G111400 chr7A 92.537 134 9 1 1087 1220 556766215 556766347 2.140000e-44 191.0
63 TraesCS5B01G111400 chr7A 80.000 175 27 4 3360 3528 77162851 77163023 7.900000e-24 122.0
64 TraesCS5B01G111400 chr7A 89.130 46 5 0 4842 4887 658989305 658989260 2.260000e-04 58.4
65 TraesCS5B01G111400 chr7B 85.565 478 45 15 2106 2579 518917616 518918073 4.070000e-131 479.0
66 TraesCS5B01G111400 chr7B 89.130 276 24 4 2676 2949 518918336 518918607 7.210000e-89 339.0
67 TraesCS5B01G111400 chr7B 83.025 324 44 8 4444 4757 518919366 518919688 3.430000e-72 283.0
68 TraesCS5B01G111400 chr7B 85.635 181 18 4 1058 1236 518916092 518916266 3.570000e-42 183.0
69 TraesCS5B01G111400 chr7B 79.882 169 25 7 5155 5323 363068551 363068392 1.320000e-21 115.0
70 TraesCS5B01G111400 chr3A 81.947 565 71 19 4999 5555 260213793 260213252 3.190000e-122 449.0
71 TraesCS5B01G111400 chr3A 100.000 34 0 0 3454 3487 724177130 724177163 4.860000e-06 63.9
72 TraesCS5B01G111400 chr3A 100.000 29 0 0 947 975 727297911 727297883 3.000000e-03 54.7
73 TraesCS5B01G111400 chr4D 87.406 397 36 8 4885 5279 261056212 261055828 1.480000e-120 444.0
74 TraesCS5B01G111400 chr4D 89.552 268 18 5 5393 5655 261055807 261055545 1.210000e-86 331.0
75 TraesCS5B01G111400 chr4D 90.283 247 20 3 4885 5128 261075246 261075001 2.610000e-83 320.0
76 TraesCS5B01G111400 chr1B 82.489 474 62 12 4988 5454 645943432 645943891 4.220000e-106 396.0
77 TraesCS5B01G111400 chr2B 82.068 474 64 13 4988 5454 218063306 218063765 9.130000e-103 385.0
78 TraesCS5B01G111400 chr2B 100.000 29 0 0 947 975 519385692 519385720 3.000000e-03 54.7
79 TraesCS5B01G111400 chr4B 82.812 320 35 9 5155 5472 429604465 429604164 9.590000e-68 268.0
80 TraesCS5B01G111400 chr3B 80.702 171 21 8 5155 5323 39529456 39529296 7.900000e-24 122.0
81 TraesCS5B01G111400 chr3B 88.889 54 3 3 4840 4893 452982438 452982488 4.860000e-06 63.9
82 TraesCS5B01G111400 chr3B 97.222 36 1 0 3452 3487 795178565 795178530 1.750000e-05 62.1
83 TraesCS5B01G111400 chr2A 85.294 102 15 0 3388 3489 717210645 717210746 7.960000e-19 106.0
84 TraesCS5B01G111400 chr2A 97.143 35 1 0 3869 3903 659889092 659889126 6.280000e-05 60.2
85 TraesCS5B01G111400 chr2A 90.909 44 2 2 4841 4883 214725853 214725811 2.260000e-04 58.4
86 TraesCS5B01G111400 chr2A 92.308 39 3 0 4835 4873 348972468 348972506 8.130000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G111400 chr5B 166537046 166542852 5806 False 5065.000000 6894 100.000000 1 5807 2 chr5B.!!$F1 5806
1 TraesCS5B01G111400 chr5B 33630543 33631487 944 True 1411.000000 1411 93.651000 1 943 1 chr5B.!!$R1 942
2 TraesCS5B01G111400 chr5B 145024259 145025208 949 True 1400.000000 1400 93.277000 1 950 1 chr5B.!!$R2 949
3 TraesCS5B01G111400 chr5B 167100712 167101656 944 True 1384.000000 1384 93.179000 4843 5785 1 chr5B.!!$R3 942
4 TraesCS5B01G111400 chr5D 160064609 160069174 4565 False 1042.320000 2076 95.516000 966 4843 5 chr5D.!!$F3 3877
5 TraesCS5B01G111400 chr5A 260332441 260336522 4081 True 1135.000000 1637 95.925000 966 4843 4 chr5A.!!$R1 3877
6 TraesCS5B01G111400 chrUn 391202112 391203059 947 False 1423.000000 1423 93.783000 1 947 1 chrUn.!!$F2 946
7 TraesCS5B01G111400 chr6B 617034850 617035792 942 True 1421.000000 1421 93.862000 1 943 1 chr6B.!!$R1 942
8 TraesCS5B01G111400 chr3D 569474847 569475796 949 True 1410.000000 1410 93.487000 1 948 1 chr3D.!!$R3 947
9 TraesCS5B01G111400 chr3D 594205432 594206374 942 False 1393.000000 1393 93.333000 1 943 1 chr3D.!!$F2 942
10 TraesCS5B01G111400 chr3D 146094588 146095321 733 True 708.000000 708 84.291000 4885 5655 1 chr3D.!!$R1 770
11 TraesCS5B01G111400 chr4A 738872619 738873564 945 False 1406.000000 1406 93.559000 1 943 1 chr4A.!!$F2 942
12 TraesCS5B01G111400 chr6D 407491348 407492296 948 False 1391.000000 1391 93.158000 1 947 1 chr6D.!!$F3 946
13 TraesCS5B01G111400 chr6D 121190172 121191121 949 False 1382.000000 1382 92.947000 1 948 1 chr6D.!!$F1 947
14 TraesCS5B01G111400 chr7D 2009377 2010102 725 False 728.000000 728 84.833000 4885 5655 1 chr7D.!!$F1 770
15 TraesCS5B01G111400 chr7D 490435443 490438625 3182 False 400.666667 691 85.149667 1058 4757 3 chr7D.!!$F7 3699
16 TraesCS5B01G111400 chr2D 94445898 94446434 536 False 496.000000 496 83.483000 4991 5542 1 chr2D.!!$F1 551
17 TraesCS5B01G111400 chr1D 75866318 75867256 938 True 294.000000 333 89.558500 5000 5655 2 chr1D.!!$R2 655
18 TraesCS5B01G111400 chr7A 556766215 556769447 3232 False 291.400000 446 85.500000 1087 4757 5 chr7A.!!$F3 3670
19 TraesCS5B01G111400 chr7B 518916092 518919688 3596 False 321.000000 479 85.838750 1058 4757 4 chr7B.!!$F1 3699
20 TraesCS5B01G111400 chr3A 260213252 260213793 541 True 449.000000 449 81.947000 4999 5555 1 chr3A.!!$R1 556
21 TraesCS5B01G111400 chr4D 261055545 261056212 667 True 387.500000 444 88.479000 4885 5655 2 chr4D.!!$R2 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 973 0.176910 GGGGTCTGCTAGAGTTGCTC 59.823 60.000 0.0 0.0 0.00 4.26 F
1651 2316 2.068821 GGCTGGATCTGGAGCTGGA 61.069 63.158 0.0 0.0 35.42 3.86 F
3345 4403 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2690 3723 1.005242 CATTTCATCGAGCTGCAGTCG 60.005 52.381 23.87 23.87 38.84 4.18 R
3554 5981 0.177373 CTTCCCCTACAACCTACGCC 59.823 60.000 0.00 0.00 0.00 5.68 R
5057 7579 1.067425 TCTACCAACATCGTTGGACCG 60.067 52.381 27.99 16.39 42.06 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.253230 GCAAGGAATGTATTGTGGCAAC 58.747 45.455 0.00 0.00 0.00 4.17
77 78 4.213564 AGCATCCGAGGATTTATGGATC 57.786 45.455 1.12 0.00 39.16 3.36
190 191 3.664107 CTCCTGCTTGCAACTACACTAA 58.336 45.455 0.00 0.00 0.00 2.24
206 207 6.767902 ACTACACTAACAATGGGCATGAATAG 59.232 38.462 0.00 0.00 0.00 1.73
214 215 4.524802 ATGGGCATGAATAGACAAAGGA 57.475 40.909 0.00 0.00 0.00 3.36
378 381 3.445096 GCAATCTAGGTTTGCCATTGTCT 59.555 43.478 16.13 0.00 42.84 3.41
530 533 2.093973 CCGTGTCAAACCAGCTAGAGAT 60.094 50.000 0.00 0.00 0.00 2.75
552 555 3.572255 TCCAAACCGCATTAGAGCTTTTT 59.428 39.130 0.00 0.00 0.00 1.94
590 593 4.091549 AGATTGAAAATGCAGACACCCAT 58.908 39.130 0.00 0.00 0.00 4.00
617 620 6.772605 TCAACTTCAGGAAGATCTCATTGAA 58.227 36.000 15.51 5.71 40.79 2.69
654 657 6.607019 AGGGTTGGACAGTGACTTATTTTTA 58.393 36.000 0.00 0.00 0.00 1.52
714 717 6.788684 TTGCACTATTTAAGTTTGCTACGA 57.211 33.333 0.00 0.00 35.76 3.43
835 838 0.320050 TGCGGGCTGATAATATGCGA 59.680 50.000 0.00 0.00 0.00 5.10
854 857 1.210931 GATGCAGCAGCGCAAAGAA 59.789 52.632 11.47 0.00 46.87 2.52
855 858 0.179145 GATGCAGCAGCGCAAAGAAT 60.179 50.000 11.47 0.00 46.87 2.40
866 871 2.230266 GCGCAAAGAATAGACCCCAAAA 59.770 45.455 0.30 0.00 0.00 2.44
868 873 3.254657 CGCAAAGAATAGACCCCAAAACA 59.745 43.478 0.00 0.00 0.00 2.83
926 932 3.243128 CGAATCCGTTTGAGGGGTT 57.757 52.632 0.00 0.00 0.00 4.11
958 964 2.759973 CCAGAGCGGGGTCTGCTA 60.760 66.667 19.60 0.00 44.18 3.49
959 965 2.790791 CCAGAGCGGGGTCTGCTAG 61.791 68.421 19.60 5.52 44.18 3.42
960 966 1.754621 CAGAGCGGGGTCTGCTAGA 60.755 63.158 14.15 0.00 44.18 2.43
961 967 1.454847 AGAGCGGGGTCTGCTAGAG 60.455 63.158 0.78 0.00 44.18 2.43
962 968 1.755008 GAGCGGGGTCTGCTAGAGT 60.755 63.158 0.78 0.00 44.18 3.24
963 969 1.305381 AGCGGGGTCTGCTAGAGTT 60.305 57.895 0.00 0.00 41.87 3.01
964 970 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
965 971 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
966 972 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
967 973 0.176910 GGGGTCTGCTAGAGTTGCTC 59.823 60.000 0.00 0.00 0.00 4.26
1164 1171 3.071206 ATGACCGAGCTGCTCCGT 61.071 61.111 22.97 21.82 0.00 4.69
1243 1267 3.020274 GCCCTTCTCTTCTTTCCCAATC 58.980 50.000 0.00 0.00 0.00 2.67
1247 1271 4.018960 CCTTCTCTTCTTTCCCAATCCTCA 60.019 45.833 0.00 0.00 0.00 3.86
1587 2252 3.869272 GCGCCGCCAGATCTGTTG 61.869 66.667 21.11 12.47 0.00 3.33
1651 2316 2.068821 GGCTGGATCTGGAGCTGGA 61.069 63.158 0.00 0.00 35.42 3.86
2152 2923 6.952773 AGTGCCACTGTTTATGTTCTAAAA 57.047 33.333 0.00 0.00 0.00 1.52
2153 2924 7.524717 AGTGCCACTGTTTATGTTCTAAAAT 57.475 32.000 0.00 0.00 0.00 1.82
2154 2925 7.593825 AGTGCCACTGTTTATGTTCTAAAATC 58.406 34.615 0.00 0.00 0.00 2.17
2155 2926 7.448469 AGTGCCACTGTTTATGTTCTAAAATCT 59.552 33.333 0.00 0.00 0.00 2.40
2156 2927 8.726988 GTGCCACTGTTTATGTTCTAAAATCTA 58.273 33.333 0.00 0.00 0.00 1.98
2157 2928 9.290988 TGCCACTGTTTATGTTCTAAAATCTAA 57.709 29.630 0.00 0.00 0.00 2.10
2199 2970 6.586751 CAATTTGACTTATGCAAGTGCTTTG 58.413 36.000 4.69 0.00 45.18 2.77
2624 3395 7.862372 TCGAAATGAAAATTCCTTCTTTCTGTG 59.138 33.333 0.00 0.00 33.55 3.66
2690 3723 7.332182 TGTTTTCTTATGGTTTGGTTGAACAAC 59.668 33.333 8.91 8.91 40.45 3.32
2713 3746 1.003759 CTGCAGCTCGATGAAATGCTC 60.004 52.381 0.00 0.00 37.76 4.26
2845 3878 3.769300 ACCATACAAAATTTGCTCCTCCC 59.231 43.478 5.52 0.00 0.00 4.30
2854 3887 1.544825 TTGCTCCTCCCAAGACTCCG 61.545 60.000 0.00 0.00 0.00 4.63
2900 3933 3.914426 AGAATACTGGGTAGTGCCTTG 57.086 47.619 0.00 0.00 37.78 3.61
2929 3962 8.242085 TGTCATACTTGCATGCTTTATTTTTG 57.758 30.769 20.33 6.65 0.00 2.44
3065 4103 9.880157 ACATATTCAATCTTGGGAAAAGAATTG 57.120 29.630 0.00 0.00 0.00 2.32
3281 4320 4.478203 TCCTTGAGTGATGCTAGAGCTAT 58.522 43.478 2.72 0.00 42.66 2.97
3299 4338 3.244422 GCTATGGACCAAATCGTATGGGA 60.244 47.826 0.00 0.00 42.48 4.37
3325 4383 2.358195 GCACTGGATGTTAGGGGGAATT 60.358 50.000 0.00 0.00 0.00 2.17
3327 4385 2.926329 ACTGGATGTTAGGGGGAATTGT 59.074 45.455 0.00 0.00 0.00 2.71
3329 4387 2.652348 TGGATGTTAGGGGGAATTGTGT 59.348 45.455 0.00 0.00 0.00 3.72
3330 4388 3.023832 GGATGTTAGGGGGAATTGTGTG 58.976 50.000 0.00 0.00 0.00 3.82
3331 4389 3.563479 GGATGTTAGGGGGAATTGTGTGT 60.563 47.826 0.00 0.00 0.00 3.72
3333 4391 2.175931 TGTTAGGGGGAATTGTGTGTGT 59.824 45.455 0.00 0.00 0.00 3.72
3335 4393 0.555769 AGGGGGAATTGTGTGTGTGT 59.444 50.000 0.00 0.00 0.00 3.72
3336 4394 0.673437 GGGGGAATTGTGTGTGTGTG 59.327 55.000 0.00 0.00 0.00 3.82
3337 4395 1.398692 GGGGAATTGTGTGTGTGTGT 58.601 50.000 0.00 0.00 0.00 3.72
3338 4396 1.066908 GGGGAATTGTGTGTGTGTGTG 59.933 52.381 0.00 0.00 0.00 3.82
3339 4397 1.748493 GGGAATTGTGTGTGTGTGTGT 59.252 47.619 0.00 0.00 0.00 3.72
3340 4398 2.479389 GGGAATTGTGTGTGTGTGTGTG 60.479 50.000 0.00 0.00 0.00 3.82
3343 4401 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
3344 4402 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3345 4403 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
3346 4404 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
3347 4405 1.377856 TGTGTGTGTGTGTGTGGGG 60.378 57.895 0.00 0.00 0.00 4.96
3348 4406 2.118404 GTGTGTGTGTGTGTGGGGG 61.118 63.158 0.00 0.00 0.00 5.40
3525 5952 5.063817 GCAATTGTCAAAGTTTGTGAAGCTT 59.936 36.000 15.08 0.00 0.00 3.74
3526 5953 6.471839 CAATTGTCAAAGTTTGTGAAGCTTG 58.528 36.000 15.08 8.95 0.00 4.01
3527 5954 5.384063 TTGTCAAAGTTTGTGAAGCTTGA 57.616 34.783 15.08 0.00 0.00 3.02
3528 5955 5.581126 TGTCAAAGTTTGTGAAGCTTGAT 57.419 34.783 15.08 0.00 0.00 2.57
3529 5956 5.342433 TGTCAAAGTTTGTGAAGCTTGATG 58.658 37.500 15.08 0.00 0.00 3.07
3530 5957 4.741676 GTCAAAGTTTGTGAAGCTTGATGG 59.258 41.667 15.08 0.00 0.00 3.51
3531 5958 4.402155 TCAAAGTTTGTGAAGCTTGATGGT 59.598 37.500 15.08 0.00 0.00 3.55
3532 5959 5.592282 TCAAAGTTTGTGAAGCTTGATGGTA 59.408 36.000 15.08 0.00 0.00 3.25
3533 5960 5.695851 AAGTTTGTGAAGCTTGATGGTAG 57.304 39.130 2.10 0.00 0.00 3.18
3534 5961 4.074970 AGTTTGTGAAGCTTGATGGTAGG 58.925 43.478 2.10 0.00 0.00 3.18
3535 5962 4.072131 GTTTGTGAAGCTTGATGGTAGGA 58.928 43.478 2.10 0.00 0.00 2.94
3536 5963 3.616956 TGTGAAGCTTGATGGTAGGAG 57.383 47.619 2.10 0.00 0.00 3.69
3537 5964 2.284190 GTGAAGCTTGATGGTAGGAGC 58.716 52.381 2.10 0.00 35.42 4.70
3538 5965 2.093235 GTGAAGCTTGATGGTAGGAGCT 60.093 50.000 2.10 0.00 46.71 4.09
3539 5966 3.133003 GTGAAGCTTGATGGTAGGAGCTA 59.867 47.826 2.10 0.00 44.17 3.32
3540 5967 3.386078 TGAAGCTTGATGGTAGGAGCTAG 59.614 47.826 2.10 0.00 44.17 3.42
3541 5968 2.324541 AGCTTGATGGTAGGAGCTAGG 58.675 52.381 0.00 0.00 43.21 3.02
3542 5969 2.091055 AGCTTGATGGTAGGAGCTAGGA 60.091 50.000 0.00 0.00 43.21 2.94
3543 5970 2.036604 GCTTGATGGTAGGAGCTAGGAC 59.963 54.545 0.00 0.00 32.54 3.85
3544 5971 2.383442 TGATGGTAGGAGCTAGGACC 57.617 55.000 3.88 3.88 0.00 4.46
3545 5972 1.133136 TGATGGTAGGAGCTAGGACCC 60.133 57.143 7.70 0.00 0.00 4.46
3546 5973 0.178958 ATGGTAGGAGCTAGGACCCG 60.179 60.000 7.70 0.00 0.00 5.28
3547 5974 1.531128 GGTAGGAGCTAGGACCCGG 60.531 68.421 0.00 0.00 0.00 5.73
3548 5975 1.531128 GTAGGAGCTAGGACCCGGG 60.531 68.421 22.25 22.25 0.00 5.73
3549 5976 2.011044 TAGGAGCTAGGACCCGGGT 61.011 63.158 30.81 30.81 0.00 5.28
3550 5977 2.004408 TAGGAGCTAGGACCCGGGTC 62.004 65.000 40.79 40.79 43.87 4.46
3551 5978 2.279408 GAGCTAGGACCCGGGTCT 59.721 66.667 44.11 33.08 44.04 3.85
3552 5979 1.535685 GAGCTAGGACCCGGGTCTA 59.464 63.158 44.11 32.53 44.04 2.59
3553 5980 0.537828 GAGCTAGGACCCGGGTCTAG 60.538 65.000 44.11 37.95 44.04 2.43
3554 5981 1.531128 GCTAGGACCCGGGTCTAGG 60.531 68.421 44.11 33.40 44.04 3.02
3560 5987 2.910994 CCCGGGTCTAGGGCGTAG 60.911 72.222 14.18 7.90 42.77 3.51
3561 5988 2.910994 CCGGGTCTAGGGCGTAGG 60.911 72.222 13.77 0.00 0.00 3.18
3562 5989 2.123982 CGGGTCTAGGGCGTAGGT 60.124 66.667 13.77 0.00 0.00 3.08
3563 5990 1.755783 CGGGTCTAGGGCGTAGGTT 60.756 63.158 13.77 0.00 0.00 3.50
3564 5991 1.821258 GGGTCTAGGGCGTAGGTTG 59.179 63.158 13.77 0.00 0.00 3.77
3565 5992 0.974525 GGGTCTAGGGCGTAGGTTGT 60.975 60.000 13.77 0.00 0.00 3.32
3566 5993 1.686115 GGGTCTAGGGCGTAGGTTGTA 60.686 57.143 13.77 0.00 0.00 2.41
3567 5994 1.680207 GGTCTAGGGCGTAGGTTGTAG 59.320 57.143 13.77 0.00 0.00 2.74
3568 5995 1.680207 GTCTAGGGCGTAGGTTGTAGG 59.320 57.143 13.77 0.00 0.00 3.18
3569 5996 1.038280 CTAGGGCGTAGGTTGTAGGG 58.962 60.000 6.33 0.00 0.00 3.53
3570 5997 0.397535 TAGGGCGTAGGTTGTAGGGG 60.398 60.000 0.00 0.00 0.00 4.79
3571 5998 1.686800 GGGCGTAGGTTGTAGGGGA 60.687 63.158 0.00 0.00 0.00 4.81
3572 5999 1.266867 GGGCGTAGGTTGTAGGGGAA 61.267 60.000 0.00 0.00 0.00 3.97
3573 6000 0.177373 GGCGTAGGTTGTAGGGGAAG 59.823 60.000 0.00 0.00 0.00 3.46
3574 6001 0.177373 GCGTAGGTTGTAGGGGAAGG 59.823 60.000 0.00 0.00 0.00 3.46
3575 6002 1.856629 CGTAGGTTGTAGGGGAAGGA 58.143 55.000 0.00 0.00 0.00 3.36
3576 6003 1.755380 CGTAGGTTGTAGGGGAAGGAG 59.245 57.143 0.00 0.00 0.00 3.69
3577 6004 2.117051 GTAGGTTGTAGGGGAAGGAGG 58.883 57.143 0.00 0.00 0.00 4.30
3578 6005 0.253207 AGGTTGTAGGGGAAGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
3579 6006 1.279749 GGTTGTAGGGGAAGGAGGGG 61.280 65.000 0.00 0.00 0.00 4.79
3580 6007 1.084084 TTGTAGGGGAAGGAGGGGG 59.916 63.158 0.00 0.00 0.00 5.40
3581 6008 2.773053 GTAGGGGAAGGAGGGGGC 60.773 72.222 0.00 0.00 0.00 5.80
3582 6009 2.964632 TAGGGGAAGGAGGGGGCT 60.965 66.667 0.00 0.00 0.00 5.19
3583 6010 3.347562 TAGGGGAAGGAGGGGGCTG 62.348 68.421 0.00 0.00 0.00 4.85
3585 6012 4.760220 GGGAAGGAGGGGGCTGGA 62.760 72.222 0.00 0.00 0.00 3.86
3586 6013 3.412408 GGAAGGAGGGGGCTGGAC 61.412 72.222 0.00 0.00 0.00 4.02
3587 6014 3.787001 GAAGGAGGGGGCTGGACG 61.787 72.222 0.00 0.00 0.00 4.79
3588 6015 4.658786 AAGGAGGGGGCTGGACGT 62.659 66.667 0.00 0.00 0.00 4.34
3608 6035 2.579787 CGAAGCTCGTGGTAGCCG 60.580 66.667 0.00 0.00 43.86 5.52
3609 6036 2.202756 GAAGCTCGTGGTAGCCGG 60.203 66.667 0.00 0.00 43.86 6.13
3610 6037 4.452733 AAGCTCGTGGTAGCCGGC 62.453 66.667 21.89 21.89 43.86 6.13
3674 6101 3.083997 CTGGAGGCGGCTAGGGTT 61.084 66.667 13.24 0.00 0.00 4.11
3675 6102 1.760875 CTGGAGGCGGCTAGGGTTA 60.761 63.158 13.24 0.00 0.00 2.85
3676 6103 1.749334 CTGGAGGCGGCTAGGGTTAG 61.749 65.000 13.24 0.25 0.00 2.34
3677 6104 2.508751 GGAGGCGGCTAGGGTTAGG 61.509 68.421 13.24 0.00 0.00 2.69
3678 6105 2.446036 AGGCGGCTAGGGTTAGGG 60.446 66.667 11.03 0.00 0.00 3.53
3679 6106 2.767073 GGCGGCTAGGGTTAGGGT 60.767 66.667 0.00 0.00 0.00 4.34
3680 6107 2.372890 GGCGGCTAGGGTTAGGGTT 61.373 63.158 0.00 0.00 0.00 4.11
3681 6108 1.145598 GCGGCTAGGGTTAGGGTTC 59.854 63.158 0.00 0.00 0.00 3.62
3682 6109 1.440476 CGGCTAGGGTTAGGGTTCG 59.560 63.158 0.00 0.00 0.00 3.95
3683 6110 1.828081 GGCTAGGGTTAGGGTTCGG 59.172 63.158 0.00 0.00 0.00 4.30
3684 6111 1.145598 GCTAGGGTTAGGGTTCGGC 59.854 63.158 0.00 0.00 0.00 5.54
3685 6112 1.335882 GCTAGGGTTAGGGTTCGGCT 61.336 60.000 0.00 0.00 0.00 5.52
3686 6113 0.751452 CTAGGGTTAGGGTTCGGCTC 59.249 60.000 0.00 0.00 0.00 4.70
3687 6114 0.688749 TAGGGTTAGGGTTCGGCTCC 60.689 60.000 0.00 0.00 0.00 4.70
3688 6115 1.993948 GGGTTAGGGTTCGGCTCCT 60.994 63.158 0.00 0.00 37.18 3.69
3689 6116 1.221021 GGTTAGGGTTCGGCTCCTG 59.779 63.158 0.00 0.00 34.75 3.86
3690 6117 1.551019 GGTTAGGGTTCGGCTCCTGT 61.551 60.000 0.00 0.00 34.75 4.00
3691 6118 0.391263 GTTAGGGTTCGGCTCCTGTG 60.391 60.000 0.00 0.00 34.75 3.66
3692 6119 1.550130 TTAGGGTTCGGCTCCTGTGG 61.550 60.000 0.00 0.00 34.75 4.17
3693 6120 4.410400 GGGTTCGGCTCCTGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
3694 6121 3.319198 GGTTCGGCTCCTGTGGGA 61.319 66.667 0.00 0.00 39.70 4.37
3704 6131 4.431131 CTGTGGGAGCCGGGCAAT 62.431 66.667 23.09 0.00 0.00 3.56
3705 6132 3.012119 TGTGGGAGCCGGGCAATA 61.012 61.111 23.09 1.15 0.00 1.90
3706 6133 2.203209 GTGGGAGCCGGGCAATAG 60.203 66.667 23.09 0.00 0.00 1.73
3707 6134 2.366301 TGGGAGCCGGGCAATAGA 60.366 61.111 23.09 0.00 0.00 1.98
3708 6135 1.770110 TGGGAGCCGGGCAATAGAT 60.770 57.895 23.09 0.00 0.00 1.98
3709 6136 1.352622 TGGGAGCCGGGCAATAGATT 61.353 55.000 23.09 0.00 0.00 2.40
3710 6137 0.178990 GGGAGCCGGGCAATAGATTT 60.179 55.000 23.09 0.00 0.00 2.17
3711 6138 1.073284 GGGAGCCGGGCAATAGATTTA 59.927 52.381 23.09 0.00 0.00 1.40
3712 6139 2.290960 GGGAGCCGGGCAATAGATTTAT 60.291 50.000 23.09 0.00 0.00 1.40
3713 6140 3.421844 GGAGCCGGGCAATAGATTTATT 58.578 45.455 23.09 0.00 0.00 1.40
3714 6141 3.440522 GGAGCCGGGCAATAGATTTATTC 59.559 47.826 23.09 4.84 0.00 1.75
3715 6142 4.327680 GAGCCGGGCAATAGATTTATTCT 58.672 43.478 23.09 0.00 38.57 2.40
3716 6143 4.729868 AGCCGGGCAATAGATTTATTCTT 58.270 39.130 23.09 0.00 35.79 2.52
3717 6144 5.876357 AGCCGGGCAATAGATTTATTCTTA 58.124 37.500 23.09 0.00 35.79 2.10
3718 6145 6.485171 AGCCGGGCAATAGATTTATTCTTAT 58.515 36.000 23.09 0.00 35.79 1.73
3719 6146 6.948309 AGCCGGGCAATAGATTTATTCTTATT 59.052 34.615 23.09 0.00 35.79 1.40
3720 6147 7.029563 GCCGGGCAATAGATTTATTCTTATTG 58.970 38.462 15.62 0.00 35.79 1.90
3721 6148 7.029563 CCGGGCAATAGATTTATTCTTATTGC 58.970 38.462 15.86 15.86 42.73 3.56
3722 6149 7.094205 CCGGGCAATAGATTTATTCTTATTGCT 60.094 37.037 20.67 0.00 42.86 3.91
3723 6150 8.299570 CGGGCAATAGATTTATTCTTATTGCTT 58.700 33.333 20.67 0.00 42.86 3.91
3724 6151 9.415544 GGGCAATAGATTTATTCTTATTGCTTG 57.584 33.333 20.67 0.00 42.86 4.01
3737 6164 9.624373 ATTCTTATTGCTTGATTGTCATAGAGT 57.376 29.630 0.00 0.00 0.00 3.24
3738 6165 8.654230 TCTTATTGCTTGATTGTCATAGAGTC 57.346 34.615 0.00 0.00 0.00 3.36
3739 6166 8.481314 TCTTATTGCTTGATTGTCATAGAGTCT 58.519 33.333 0.00 0.00 0.00 3.24
3740 6167 9.107177 CTTATTGCTTGATTGTCATAGAGTCTT 57.893 33.333 0.00 0.00 0.00 3.01
3742 6169 7.834068 TTGCTTGATTGTCATAGAGTCTTAC 57.166 36.000 0.00 0.00 0.00 2.34
3743 6170 6.935167 TGCTTGATTGTCATAGAGTCTTACA 58.065 36.000 0.00 0.00 0.00 2.41
3744 6171 7.386059 TGCTTGATTGTCATAGAGTCTTACAA 58.614 34.615 14.21 14.21 34.81 2.41
3745 6172 7.331934 TGCTTGATTGTCATAGAGTCTTACAAC 59.668 37.037 14.17 10.40 33.27 3.32
3746 6173 7.547370 GCTTGATTGTCATAGAGTCTTACAACT 59.453 37.037 14.17 7.14 33.27 3.16
3749 6176 9.244292 TGATTGTCATAGAGTCTTACAACTAGT 57.756 33.333 14.17 0.00 33.27 2.57
3789 6216 9.965824 ATGGAAAATAAAATAGATAACTTGCGG 57.034 29.630 0.00 0.00 0.00 5.69
3790 6217 8.410141 TGGAAAATAAAATAGATAACTTGCGGG 58.590 33.333 0.00 0.00 0.00 6.13
3791 6218 7.381408 GGAAAATAAAATAGATAACTTGCGGGC 59.619 37.037 0.00 0.00 0.00 6.13
3792 6219 7.582667 AAATAAAATAGATAACTTGCGGGCT 57.417 32.000 0.00 0.00 0.00 5.19
3793 6220 8.685838 AAATAAAATAGATAACTTGCGGGCTA 57.314 30.769 0.00 0.00 0.00 3.93
3794 6221 8.685838 AATAAAATAGATAACTTGCGGGCTAA 57.314 30.769 0.00 0.00 0.00 3.09
3795 6222 6.619801 AAAATAGATAACTTGCGGGCTAAG 57.380 37.500 0.00 0.00 0.00 2.18
3796 6223 1.954927 AGATAACTTGCGGGCTAAGC 58.045 50.000 0.00 0.00 0.00 3.09
3809 6236 2.928334 GGCTAAGCCCCTAACTAAACC 58.072 52.381 0.00 0.00 44.06 3.27
3810 6237 2.508716 GGCTAAGCCCCTAACTAAACCT 59.491 50.000 0.00 0.00 44.06 3.50
3811 6238 3.542648 GCTAAGCCCCTAACTAAACCTG 58.457 50.000 0.00 0.00 0.00 4.00
3812 6239 2.509166 AAGCCCCTAACTAAACCTGC 57.491 50.000 0.00 0.00 0.00 4.85
3813 6240 0.624254 AGCCCCTAACTAAACCTGCC 59.376 55.000 0.00 0.00 0.00 4.85
3814 6241 0.395311 GCCCCTAACTAAACCTGCCC 60.395 60.000 0.00 0.00 0.00 5.36
3815 6242 0.996583 CCCCTAACTAAACCTGCCCA 59.003 55.000 0.00 0.00 0.00 5.36
3816 6243 1.064685 CCCCTAACTAAACCTGCCCAG 60.065 57.143 0.00 0.00 0.00 4.45
3817 6244 1.633945 CCCTAACTAAACCTGCCCAGT 59.366 52.381 0.00 0.00 0.00 4.00
3818 6245 2.618045 CCCTAACTAAACCTGCCCAGTG 60.618 54.545 0.00 0.00 0.00 3.66
3819 6246 2.618045 CCTAACTAAACCTGCCCAGTGG 60.618 54.545 0.63 0.63 0.00 4.00
3829 6256 2.285368 CCCAGTGGGCCTCCTACA 60.285 66.667 17.33 0.00 35.35 2.74
3830 6257 2.370445 CCCAGTGGGCCTCCTACAG 61.370 68.421 17.33 0.00 35.35 2.74
3831 6258 2.370445 CCAGTGGGCCTCCTACAGG 61.370 68.421 4.53 0.00 46.82 4.00
3848 6275 4.126524 GCATAAGTCTGCCCGGTC 57.873 61.111 0.00 0.00 36.10 4.79
3849 6276 1.220749 GCATAAGTCTGCCCGGTCA 59.779 57.895 0.00 0.00 36.10 4.02
3850 6277 0.179045 GCATAAGTCTGCCCGGTCAT 60.179 55.000 0.00 0.00 36.10 3.06
3851 6278 1.070134 GCATAAGTCTGCCCGGTCATA 59.930 52.381 0.00 0.00 36.10 2.15
3852 6279 2.484770 GCATAAGTCTGCCCGGTCATAA 60.485 50.000 0.00 0.00 36.10 1.90
3853 6280 2.973694 TAAGTCTGCCCGGTCATAAC 57.026 50.000 0.00 0.00 0.00 1.89
3854 6281 0.981183 AAGTCTGCCCGGTCATAACA 59.019 50.000 0.00 0.00 0.00 2.41
3855 6282 0.249398 AGTCTGCCCGGTCATAACAC 59.751 55.000 0.00 0.00 0.00 3.32
3856 6283 0.249398 GTCTGCCCGGTCATAACACT 59.751 55.000 0.00 0.00 0.00 3.55
3857 6284 0.981183 TCTGCCCGGTCATAACACTT 59.019 50.000 0.00 0.00 0.00 3.16
3874 6301 2.529894 CACTTGACTTTTGCGAAAACCG 59.470 45.455 0.00 0.00 42.21 4.44
3899 6326 4.021456 TGCACACTATATTATGGGACGGAG 60.021 45.833 0.00 0.00 0.00 4.63
3943 6371 3.517296 TTGATCTTTGGTTGTGGGCTA 57.483 42.857 0.00 0.00 0.00 3.93
3955 6391 3.634568 TGTGGGCTATTGTTTTCAACG 57.365 42.857 0.00 0.00 42.94 4.10
4066 6510 1.542915 CTGCAAACCATTGACCTCTGG 59.457 52.381 0.00 0.00 38.94 3.86
4209 6653 5.191522 TCTCAACCATGTATTCTCCATTCCA 59.808 40.000 0.00 0.00 0.00 3.53
4243 6747 5.067805 CCAGTGTTTTTCCTGCTAAACTCTT 59.932 40.000 0.00 0.00 36.50 2.85
4373 6879 8.581578 TCCATTTAACTAATCTTTTGTTGGTCC 58.418 33.333 0.00 0.00 0.00 4.46
4590 7098 3.591254 AAGGAAGTGACCGCCGAGC 62.591 63.158 0.00 0.00 34.73 5.03
4825 7343 5.047847 GCGGTACAGAGATAATTACAGCAA 58.952 41.667 0.00 0.00 36.17 3.91
4833 7351 8.263640 ACAGAGATAATTACAGCAAACTCATCT 58.736 33.333 0.00 0.00 0.00 2.90
4856 7374 9.848710 ATCTTTAGAAATACTAGTAAAAGGGCC 57.151 33.333 17.78 0.00 32.30 5.80
4880 7398 3.428534 GTGCGTTGCAAAGGGATTAAAAG 59.571 43.478 14.31 0.00 41.47 2.27
4932 7450 2.342648 GAAGCCCTCGGACACGTT 59.657 61.111 0.00 0.00 41.85 3.99
5014 7534 4.196626 TCTCCAAAACGACATAACCGAT 57.803 40.909 0.00 0.00 0.00 4.18
5057 7579 1.035932 TACCTCAGGTAGAGCACGGC 61.036 60.000 0.00 0.00 43.31 5.68
5099 7621 1.515519 GCGAGATTGTACGACGGCA 60.516 57.895 0.00 0.00 0.00 5.69
5105 7627 0.036765 ATTGTACGACGGCATGTGGT 60.037 50.000 0.00 1.92 42.62 4.16
5256 8106 5.379732 TTTAACCTTGCAATTAGAACCCG 57.620 39.130 0.00 0.00 0.00 5.28
5281 8131 5.077564 AGGGTTTAGTGATGTCTTTTTCCC 58.922 41.667 0.00 0.00 0.00 3.97
5327 8177 9.090103 TCTGGATATGAATTGGGTACTAGTAAG 57.910 37.037 3.61 0.00 0.00 2.34
5329 8179 9.886337 TGGATATGAATTGGGTACTAGTAAGTA 57.114 33.333 3.61 0.00 37.15 2.24
5377 8249 4.769688 TCGATTGATGGAACTGTAGCAAT 58.230 39.130 0.00 0.00 0.00 3.56
5378 8250 5.912892 TCGATTGATGGAACTGTAGCAATA 58.087 37.500 0.00 0.00 0.00 1.90
5379 8251 6.345298 TCGATTGATGGAACTGTAGCAATAA 58.655 36.000 0.00 0.00 0.00 1.40
5380 8252 6.257849 TCGATTGATGGAACTGTAGCAATAAC 59.742 38.462 0.00 0.00 0.00 1.89
5381 8253 6.037062 CGATTGATGGAACTGTAGCAATAACA 59.963 38.462 0.00 0.00 0.00 2.41
5382 8254 7.413988 CGATTGATGGAACTGTAGCAATAACAA 60.414 37.037 0.00 0.00 0.00 2.83
5383 8255 6.494893 TGATGGAACTGTAGCAATAACAAC 57.505 37.500 0.00 0.00 0.00 3.32
5384 8256 6.000840 TGATGGAACTGTAGCAATAACAACA 58.999 36.000 0.00 0.00 0.00 3.33
5385 8257 5.940192 TGGAACTGTAGCAATAACAACAG 57.060 39.130 0.00 0.00 0.00 3.16
5386 8258 4.215399 TGGAACTGTAGCAATAACAACAGC 59.785 41.667 1.43 0.00 0.00 4.40
5387 8259 4.215399 GGAACTGTAGCAATAACAACAGCA 59.785 41.667 1.43 0.00 0.00 4.41
5388 8260 5.278266 GGAACTGTAGCAATAACAACAGCAA 60.278 40.000 1.43 0.00 0.00 3.91
5389 8261 5.964958 ACTGTAGCAATAACAACAGCAAT 57.035 34.783 1.43 0.00 0.00 3.56
5390 8262 5.942872 ACTGTAGCAATAACAACAGCAATC 58.057 37.500 1.43 0.00 0.00 2.67
5391 8263 5.473162 ACTGTAGCAATAACAACAGCAATCA 59.527 36.000 1.43 0.00 0.00 2.57
5392 8264 5.941733 TGTAGCAATAACAACAGCAATCAG 58.058 37.500 0.00 0.00 0.00 2.90
5393 8265 5.473162 TGTAGCAATAACAACAGCAATCAGT 59.527 36.000 0.00 0.00 0.00 3.41
5394 8266 6.652900 TGTAGCAATAACAACAGCAATCAGTA 59.347 34.615 0.00 0.00 0.00 2.74
5395 8267 6.187125 AGCAATAACAACAGCAATCAGTAG 57.813 37.500 0.00 0.00 0.00 2.57
5396 8268 4.795278 GCAATAACAACAGCAATCAGTAGC 59.205 41.667 0.00 0.00 0.00 3.58
5397 8269 5.619757 GCAATAACAACAGCAATCAGTAGCA 60.620 40.000 0.00 0.00 0.00 3.49
5398 8270 6.380995 CAATAACAACAGCAATCAGTAGCAA 58.619 36.000 0.00 0.00 0.00 3.91
5442 8314 3.957671 AATGTGCATCAATCAGTAGCG 57.042 42.857 0.00 0.00 0.00 4.26
5454 8326 7.873739 TCAATCAGTAGCGACATACATTATG 57.126 36.000 0.00 0.00 41.88 1.90
5640 8533 4.821589 GCCTCCCCGTCTTCAGCG 62.822 72.222 0.00 0.00 0.00 5.18
5690 8589 5.920193 ATCAATTTGGTCGGATGTGAAAT 57.080 34.783 0.00 0.00 0.00 2.17
5719 8618 3.703052 GAGGATGGAATGAACCTGCATTT 59.297 43.478 0.00 0.00 38.53 2.32
5725 8624 3.319755 GAATGAACCTGCATTTGTGGTG 58.680 45.455 0.00 0.00 38.53 4.17
5751 8650 2.829206 TTGCGAACTTGTGGCACGG 61.829 57.895 13.77 10.80 41.13 4.94
5752 8651 4.683334 GCGAACTTGTGGCACGGC 62.683 66.667 13.77 5.58 0.00 5.68
5775 8674 2.359975 GGGGAGCAACTTGACCCG 60.360 66.667 14.34 0.00 42.90 5.28
5785 8684 1.079543 CTTGACCCGTGCTCCTGAG 60.080 63.158 0.00 0.00 0.00 3.35
5786 8685 1.821061 CTTGACCCGTGCTCCTGAGT 61.821 60.000 0.00 0.00 0.00 3.41
5787 8686 1.816863 TTGACCCGTGCTCCTGAGTC 61.817 60.000 0.00 0.00 0.00 3.36
5788 8687 2.997897 ACCCGTGCTCCTGAGTCC 60.998 66.667 0.00 0.00 0.00 3.85
5789 8688 2.681778 CCCGTGCTCCTGAGTCCT 60.682 66.667 0.00 0.00 0.00 3.85
5790 8689 2.575993 CCGTGCTCCTGAGTCCTG 59.424 66.667 0.00 0.00 0.00 3.86
5791 8690 1.979155 CCGTGCTCCTGAGTCCTGA 60.979 63.158 0.00 0.00 0.00 3.86
5792 8691 1.536073 CCGTGCTCCTGAGTCCTGAA 61.536 60.000 0.00 0.00 0.00 3.02
5793 8692 0.108898 CGTGCTCCTGAGTCCTGAAG 60.109 60.000 0.00 0.00 0.00 3.02
5794 8693 1.261480 GTGCTCCTGAGTCCTGAAGA 58.739 55.000 0.00 0.00 0.00 2.87
5795 8694 1.830477 GTGCTCCTGAGTCCTGAAGAT 59.170 52.381 0.00 0.00 0.00 2.40
5796 8695 2.106566 TGCTCCTGAGTCCTGAAGATC 58.893 52.381 0.00 0.00 0.00 2.75
5797 8696 2.292126 TGCTCCTGAGTCCTGAAGATCT 60.292 50.000 0.00 0.00 0.00 2.75
5798 8697 2.362077 GCTCCTGAGTCCTGAAGATCTC 59.638 54.545 0.00 0.00 0.00 2.75
5799 8698 2.958355 CTCCTGAGTCCTGAAGATCTCC 59.042 54.545 0.00 0.00 0.00 3.71
5800 8699 2.584965 TCCTGAGTCCTGAAGATCTCCT 59.415 50.000 0.00 0.00 0.00 3.69
5801 8700 2.958355 CCTGAGTCCTGAAGATCTCCTC 59.042 54.545 0.00 0.00 0.00 3.71
5802 8701 2.958355 CTGAGTCCTGAAGATCTCCTCC 59.042 54.545 0.00 0.00 0.00 4.30
5803 8702 2.584965 TGAGTCCTGAAGATCTCCTCCT 59.415 50.000 0.00 0.00 0.00 3.69
5804 8703 3.222603 GAGTCCTGAAGATCTCCTCCTC 58.777 54.545 0.00 0.00 0.00 3.71
5805 8704 1.953686 GTCCTGAAGATCTCCTCCTCG 59.046 57.143 0.00 0.00 0.00 4.63
5806 8705 1.133637 TCCTGAAGATCTCCTCCTCGG 60.134 57.143 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.485633 CACAATTGTTGCATCACGAGAG 58.514 45.455 8.77 0.00 0.00 3.20
190 191 4.403432 CCTTTGTCTATTCATGCCCATTGT 59.597 41.667 0.00 0.00 0.00 2.71
206 207 5.967088 TCTGCAAGATAGTACTCCTTTGTC 58.033 41.667 0.00 0.73 38.67 3.18
378 381 1.021202 CAAAAACGAGCAGGACCACA 58.979 50.000 0.00 0.00 0.00 4.17
483 486 6.399639 ACCCACATTGTCGTAAAAGAATTT 57.600 33.333 0.00 0.00 42.41 1.82
530 533 2.489938 AAGCTCTAATGCGGTTTGGA 57.510 45.000 0.00 0.00 38.13 3.53
552 555 8.690203 TTTTCAATCTCCTTGTATGTCTGAAA 57.310 30.769 0.00 0.00 36.20 2.69
590 593 7.720957 TCAATGAGATCTTCCTGAAGTTGAAAA 59.279 33.333 0.00 0.00 39.38 2.29
617 620 0.758123 CAACCCTTTGCCAATGGTGT 59.242 50.000 8.40 3.77 31.64 4.16
835 838 1.239296 TTCTTTGCGCTGCTGCATCT 61.239 50.000 16.29 0.00 45.78 2.90
854 857 2.986728 ACAGGTCTGTTTTGGGGTCTAT 59.013 45.455 0.00 0.00 41.83 1.98
855 858 2.414612 ACAGGTCTGTTTTGGGGTCTA 58.585 47.619 0.00 0.00 41.83 2.59
866 871 9.975218 ATGAAATATACCTTTTTACAGGTCTGT 57.025 29.630 8.74 8.74 44.63 3.41
938 944 4.154347 CAGACCCCGCTCTGGCTC 62.154 72.222 0.00 0.00 35.00 4.70
943 949 1.454847 CTCTAGCAGACCCCGCTCT 60.455 63.158 0.00 0.00 40.96 4.09
950 956 3.193691 TGTAAGAGCAACTCTAGCAGACC 59.806 47.826 0.00 0.00 40.28 3.85
951 957 4.442375 TGTAAGAGCAACTCTAGCAGAC 57.558 45.455 0.00 0.00 40.28 3.51
952 958 5.468540 TTTGTAAGAGCAACTCTAGCAGA 57.531 39.130 0.00 0.00 40.28 4.26
953 959 5.106908 GGTTTTGTAAGAGCAACTCTAGCAG 60.107 44.000 0.00 0.00 40.28 4.24
954 960 4.755123 GGTTTTGTAAGAGCAACTCTAGCA 59.245 41.667 0.00 0.00 40.28 3.49
955 961 4.154375 GGGTTTTGTAAGAGCAACTCTAGC 59.846 45.833 0.00 0.00 40.28 3.42
956 962 4.695928 GGGGTTTTGTAAGAGCAACTCTAG 59.304 45.833 0.00 0.00 40.28 2.43
957 963 4.648651 GGGGTTTTGTAAGAGCAACTCTA 58.351 43.478 0.00 0.00 40.28 2.43
958 964 3.487372 GGGGTTTTGTAAGAGCAACTCT 58.513 45.455 0.00 0.00 43.37 3.24
959 965 2.225727 CGGGGTTTTGTAAGAGCAACTC 59.774 50.000 0.00 0.00 0.00 3.01
960 966 2.158726 TCGGGGTTTTGTAAGAGCAACT 60.159 45.455 0.00 0.00 0.00 3.16
961 967 2.223745 TCGGGGTTTTGTAAGAGCAAC 58.776 47.619 0.00 0.00 0.00 4.17
962 968 2.642154 TCGGGGTTTTGTAAGAGCAA 57.358 45.000 0.00 0.00 0.00 3.91
963 969 2.039216 TGATCGGGGTTTTGTAAGAGCA 59.961 45.455 0.00 0.00 0.00 4.26
964 970 2.678336 CTGATCGGGGTTTTGTAAGAGC 59.322 50.000 0.00 0.00 0.00 4.09
965 971 4.184629 CTCTGATCGGGGTTTTGTAAGAG 58.815 47.826 0.62 0.00 0.00 2.85
966 972 3.618997 GCTCTGATCGGGGTTTTGTAAGA 60.619 47.826 2.68 0.00 0.00 2.10
967 973 2.678336 GCTCTGATCGGGGTTTTGTAAG 59.322 50.000 2.68 0.00 0.00 2.34
1243 1267 6.467677 TCTTTTGGTGTAGAAGAAGATGAGG 58.532 40.000 0.00 0.00 0.00 3.86
1247 1271 6.012508 TGGGATCTTTTGGTGTAGAAGAAGAT 60.013 38.462 0.00 0.00 36.76 2.40
1587 2252 2.340453 TACCCTATCGCGCCAACGAC 62.340 60.000 0.00 0.00 46.28 4.34
1729 2394 3.372440 AGCTATTTTGGAGTTGAGGGG 57.628 47.619 0.00 0.00 0.00 4.79
2092 2767 8.579850 AATTAAAGATGAACCAGAGCATACAA 57.420 30.769 0.00 0.00 0.00 2.41
2199 2970 2.749621 CAGGTGGACCTACAGAATTTGC 59.250 50.000 0.00 0.00 46.65 3.68
2690 3723 1.005242 CATTTCATCGAGCTGCAGTCG 60.005 52.381 23.87 23.87 38.84 4.18
2845 3878 1.550524 TCATCAACTCCCGGAGTCTTG 59.449 52.381 20.70 15.67 42.59 3.02
2854 3887 6.375455 ACATTTGACTTACATCATCAACTCCC 59.625 38.462 0.00 0.00 32.21 4.30
2900 3933 9.903682 AAATAAAGCATGCAAGTATGACATATC 57.096 29.630 21.98 0.00 0.00 1.63
2929 3962 4.332543 TGTGGAAGCAATGATCACGATAAC 59.667 41.667 0.00 0.00 0.00 1.89
3065 4103 0.749649 TCACCCACAACACAATTGGC 59.250 50.000 10.83 0.00 0.00 4.52
3281 4320 3.943671 AATCCCATACGATTTGGTCCA 57.056 42.857 0.00 0.00 31.99 4.02
3299 4338 2.158813 CCCCTAACATCCAGTGCGTAAT 60.159 50.000 0.00 0.00 0.00 1.89
3325 4383 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3327 4385 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
3329 4387 1.377856 CCCCACACACACACACACA 60.378 57.895 0.00 0.00 0.00 3.72
3330 4388 2.118404 CCCCCACACACACACACAC 61.118 63.158 0.00 0.00 0.00 3.82
3331 4389 2.273776 CCCCCACACACACACACA 59.726 61.111 0.00 0.00 0.00 3.72
3350 4408 1.847328 CACACTATTTTGGGACCCCC 58.153 55.000 8.45 0.00 45.71 5.40
3351 4409 1.182667 GCACACTATTTTGGGACCCC 58.817 55.000 8.45 2.69 0.00 4.95
3352 4410 1.917872 TGCACACTATTTTGGGACCC 58.082 50.000 2.45 2.45 0.00 4.46
3353 4411 4.947388 TCTAATGCACACTATTTTGGGACC 59.053 41.667 0.00 0.00 0.00 4.46
3493 5920 6.974622 ACAAACTTTGACAATTGCTTGTAGAG 59.025 34.615 5.05 0.00 45.57 2.43
3494 5921 6.751425 CACAAACTTTGACAATTGCTTGTAGA 59.249 34.615 5.05 0.00 45.57 2.59
3495 5922 6.751425 TCACAAACTTTGACAATTGCTTGTAG 59.249 34.615 5.05 0.00 45.57 2.74
3501 5928 4.567959 AGCTTCACAAACTTTGACAATTGC 59.432 37.500 5.05 0.00 0.00 3.56
3506 5933 5.342433 CATCAAGCTTCACAAACTTTGACA 58.658 37.500 8.55 0.00 0.00 3.58
3525 5952 1.133136 GGGTCCTAGCTCCTACCATCA 60.133 57.143 11.99 0.00 33.46 3.07
3526 5953 1.634960 GGGTCCTAGCTCCTACCATC 58.365 60.000 11.99 0.00 33.46 3.51
3527 5954 0.178958 CGGGTCCTAGCTCCTACCAT 60.179 60.000 11.99 0.00 33.46 3.55
3528 5955 1.229359 CGGGTCCTAGCTCCTACCA 59.771 63.158 11.99 0.00 33.46 3.25
3529 5956 1.531128 CCGGGTCCTAGCTCCTACC 60.531 68.421 0.00 0.00 0.00 3.18
3530 5957 1.531128 CCCGGGTCCTAGCTCCTAC 60.531 68.421 14.18 0.00 0.00 3.18
3531 5958 2.004408 GACCCGGGTCCTAGCTCCTA 62.004 65.000 39.24 0.00 39.08 2.94
3532 5959 3.357082 ACCCGGGTCCTAGCTCCT 61.357 66.667 24.16 0.00 0.00 3.69
3533 5960 2.004408 TAGACCCGGGTCCTAGCTCC 62.004 65.000 43.37 22.07 45.59 4.70
3534 5961 0.537828 CTAGACCCGGGTCCTAGCTC 60.538 65.000 43.37 22.83 45.59 4.09
3535 5962 1.537669 CTAGACCCGGGTCCTAGCT 59.462 63.158 43.37 29.62 45.59 3.32
3536 5963 1.531128 CCTAGACCCGGGTCCTAGC 60.531 68.421 43.37 24.33 45.59 3.42
3537 5964 1.153292 CCCTAGACCCGGGTCCTAG 59.847 68.421 43.37 36.76 45.59 3.02
3538 5965 3.078843 GCCCTAGACCCGGGTCCTA 62.079 68.421 43.37 31.91 45.59 2.94
3539 5966 4.477119 GCCCTAGACCCGGGTCCT 62.477 72.222 43.37 32.44 45.59 3.85
3541 5968 3.721370 TACGCCCTAGACCCGGGTC 62.721 68.421 41.42 41.42 43.92 4.46
3542 5969 3.728292 CTACGCCCTAGACCCGGGT 62.728 68.421 30.81 30.81 43.92 5.28
3543 5970 2.910994 CTACGCCCTAGACCCGGG 60.911 72.222 22.25 22.25 44.89 5.73
3544 5971 2.910994 CCTACGCCCTAGACCCGG 60.911 72.222 0.00 0.00 0.00 5.73
3545 5972 1.755783 AACCTACGCCCTAGACCCG 60.756 63.158 0.00 0.00 0.00 5.28
3546 5973 0.974525 ACAACCTACGCCCTAGACCC 60.975 60.000 0.00 0.00 0.00 4.46
3547 5974 1.680207 CTACAACCTACGCCCTAGACC 59.320 57.143 0.00 0.00 0.00 3.85
3548 5975 1.680207 CCTACAACCTACGCCCTAGAC 59.320 57.143 0.00 0.00 0.00 2.59
3549 5976 1.410648 CCCTACAACCTACGCCCTAGA 60.411 57.143 0.00 0.00 0.00 2.43
3550 5977 1.038280 CCCTACAACCTACGCCCTAG 58.962 60.000 0.00 0.00 0.00 3.02
3551 5978 0.397535 CCCCTACAACCTACGCCCTA 60.398 60.000 0.00 0.00 0.00 3.53
3552 5979 1.688187 CCCCTACAACCTACGCCCT 60.688 63.158 0.00 0.00 0.00 5.19
3553 5980 1.266867 TTCCCCTACAACCTACGCCC 61.267 60.000 0.00 0.00 0.00 6.13
3554 5981 0.177373 CTTCCCCTACAACCTACGCC 59.823 60.000 0.00 0.00 0.00 5.68
3555 5982 0.177373 CCTTCCCCTACAACCTACGC 59.823 60.000 0.00 0.00 0.00 4.42
3556 5983 1.755380 CTCCTTCCCCTACAACCTACG 59.245 57.143 0.00 0.00 0.00 3.51
3557 5984 2.117051 CCTCCTTCCCCTACAACCTAC 58.883 57.143 0.00 0.00 0.00 3.18
3558 5985 1.009183 CCCTCCTTCCCCTACAACCTA 59.991 57.143 0.00 0.00 0.00 3.08
3559 5986 0.253207 CCCTCCTTCCCCTACAACCT 60.253 60.000 0.00 0.00 0.00 3.50
3560 5987 1.279749 CCCCTCCTTCCCCTACAACC 61.280 65.000 0.00 0.00 0.00 3.77
3561 5988 1.279749 CCCCCTCCTTCCCCTACAAC 61.280 65.000 0.00 0.00 0.00 3.32
3562 5989 1.084084 CCCCCTCCTTCCCCTACAA 59.916 63.158 0.00 0.00 0.00 2.41
3563 5990 2.792222 CCCCCTCCTTCCCCTACA 59.208 66.667 0.00 0.00 0.00 2.74
3564 5991 2.773053 GCCCCCTCCTTCCCCTAC 60.773 72.222 0.00 0.00 0.00 3.18
3565 5992 2.964632 AGCCCCCTCCTTCCCCTA 60.965 66.667 0.00 0.00 0.00 3.53
3566 5993 4.767892 CAGCCCCCTCCTTCCCCT 62.768 72.222 0.00 0.00 0.00 4.79
3568 5995 4.760220 TCCAGCCCCCTCCTTCCC 62.760 72.222 0.00 0.00 0.00 3.97
3569 5996 3.412408 GTCCAGCCCCCTCCTTCC 61.412 72.222 0.00 0.00 0.00 3.46
3570 5997 3.787001 CGTCCAGCCCCCTCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
3571 5998 4.658786 ACGTCCAGCCCCCTCCTT 62.659 66.667 0.00 0.00 0.00 3.36
3581 6008 2.811317 GAGCTTCGCCACGTCCAG 60.811 66.667 0.00 0.00 0.00 3.86
3582 6009 4.717629 CGAGCTTCGCCACGTCCA 62.718 66.667 0.00 0.00 31.14 4.02
3583 6010 4.719369 ACGAGCTTCGCCACGTCC 62.719 66.667 5.63 0.00 45.12 4.79
3584 6011 3.470567 CACGAGCTTCGCCACGTC 61.471 66.667 5.63 0.00 45.12 4.34
3586 6013 3.620300 TACCACGAGCTTCGCCACG 62.620 63.158 5.63 0.00 45.12 4.94
3587 6014 1.805945 CTACCACGAGCTTCGCCAC 60.806 63.158 5.63 0.00 45.12 5.01
3588 6015 2.571757 CTACCACGAGCTTCGCCA 59.428 61.111 5.63 0.00 45.12 5.69
3589 6016 2.886124 GCTACCACGAGCTTCGCC 60.886 66.667 5.63 0.00 45.12 5.54
3590 6017 2.886124 GGCTACCACGAGCTTCGC 60.886 66.667 5.63 0.00 45.12 4.70
3591 6018 2.579787 CGGCTACCACGAGCTTCG 60.580 66.667 0.00 0.00 46.93 3.79
3592 6019 2.202756 CCGGCTACCACGAGCTTC 60.203 66.667 0.00 0.00 42.43 3.86
3593 6020 4.452733 GCCGGCTACCACGAGCTT 62.453 66.667 22.15 0.00 42.43 3.74
3651 6078 3.984186 TAGCCGCCTCCAGCTCCTT 62.984 63.158 0.00 0.00 40.56 3.36
3652 6079 4.465446 TAGCCGCCTCCAGCTCCT 62.465 66.667 0.00 0.00 40.56 3.69
3653 6080 3.922640 CTAGCCGCCTCCAGCTCC 61.923 72.222 0.00 0.00 40.56 4.70
3654 6081 3.922640 CCTAGCCGCCTCCAGCTC 61.923 72.222 0.00 0.00 40.56 4.09
3657 6084 1.749334 CTAACCCTAGCCGCCTCCAG 61.749 65.000 0.00 0.00 0.00 3.86
3658 6085 1.760875 CTAACCCTAGCCGCCTCCA 60.761 63.158 0.00 0.00 0.00 3.86
3659 6086 2.508751 CCTAACCCTAGCCGCCTCC 61.509 68.421 0.00 0.00 0.00 4.30
3660 6087 2.508751 CCCTAACCCTAGCCGCCTC 61.509 68.421 0.00 0.00 0.00 4.70
3661 6088 2.446036 CCCTAACCCTAGCCGCCT 60.446 66.667 0.00 0.00 0.00 5.52
3662 6089 2.321263 GAACCCTAACCCTAGCCGCC 62.321 65.000 0.00 0.00 0.00 6.13
3663 6090 1.145598 GAACCCTAACCCTAGCCGC 59.854 63.158 0.00 0.00 0.00 6.53
3664 6091 1.440476 CGAACCCTAACCCTAGCCG 59.560 63.158 0.00 0.00 0.00 5.52
3665 6092 1.828081 CCGAACCCTAACCCTAGCC 59.172 63.158 0.00 0.00 0.00 3.93
3666 6093 1.145598 GCCGAACCCTAACCCTAGC 59.854 63.158 0.00 0.00 0.00 3.42
3667 6094 0.751452 GAGCCGAACCCTAACCCTAG 59.249 60.000 0.00 0.00 0.00 3.02
3668 6095 0.688749 GGAGCCGAACCCTAACCCTA 60.689 60.000 0.00 0.00 0.00 3.53
3669 6096 1.993948 GGAGCCGAACCCTAACCCT 60.994 63.158 0.00 0.00 0.00 4.34
3670 6097 1.993948 AGGAGCCGAACCCTAACCC 60.994 63.158 0.00 0.00 0.00 4.11
3671 6098 1.221021 CAGGAGCCGAACCCTAACC 59.779 63.158 0.00 0.00 0.00 2.85
3672 6099 0.391263 CACAGGAGCCGAACCCTAAC 60.391 60.000 0.00 0.00 0.00 2.34
3673 6100 1.550130 CCACAGGAGCCGAACCCTAA 61.550 60.000 0.00 0.00 0.00 2.69
3674 6101 1.987855 CCACAGGAGCCGAACCCTA 60.988 63.158 0.00 0.00 0.00 3.53
3675 6102 3.322466 CCACAGGAGCCGAACCCT 61.322 66.667 0.00 0.00 0.00 4.34
3676 6103 4.410400 CCCACAGGAGCCGAACCC 62.410 72.222 0.00 0.00 33.47 4.11
3677 6104 3.319198 TCCCACAGGAGCCGAACC 61.319 66.667 0.00 0.00 37.19 3.62
3687 6114 2.947938 CTATTGCCCGGCTCCCACAG 62.948 65.000 11.61 0.00 0.00 3.66
3688 6115 3.012119 TATTGCCCGGCTCCCACA 61.012 61.111 11.61 0.00 0.00 4.17
3689 6116 2.056906 ATCTATTGCCCGGCTCCCAC 62.057 60.000 11.61 0.00 0.00 4.61
3690 6117 1.352622 AATCTATTGCCCGGCTCCCA 61.353 55.000 11.61 0.00 0.00 4.37
3691 6118 0.178990 AAATCTATTGCCCGGCTCCC 60.179 55.000 11.61 0.00 0.00 4.30
3692 6119 2.561478 TAAATCTATTGCCCGGCTCC 57.439 50.000 11.61 0.00 0.00 4.70
3693 6120 4.327680 AGAATAAATCTATTGCCCGGCTC 58.672 43.478 11.61 0.00 36.32 4.70
3694 6121 4.373156 AGAATAAATCTATTGCCCGGCT 57.627 40.909 11.61 0.00 36.32 5.52
3695 6122 6.759497 ATAAGAATAAATCTATTGCCCGGC 57.241 37.500 1.04 1.04 37.42 6.13
3696 6123 7.029563 GCAATAAGAATAAATCTATTGCCCGG 58.970 38.462 12.47 0.00 42.15 5.73
3697 6124 7.820648 AGCAATAAGAATAAATCTATTGCCCG 58.179 34.615 17.54 0.00 44.91 6.13
3698 6125 9.415544 CAAGCAATAAGAATAAATCTATTGCCC 57.584 33.333 17.54 0.00 44.91 5.36
3711 6138 9.624373 ACTCTATGACAATCAAGCAATAAGAAT 57.376 29.630 0.00 0.00 0.00 2.40
3712 6139 9.102757 GACTCTATGACAATCAAGCAATAAGAA 57.897 33.333 0.00 0.00 0.00 2.52
3713 6140 8.481314 AGACTCTATGACAATCAAGCAATAAGA 58.519 33.333 0.00 0.00 0.00 2.10
3714 6141 8.659925 AGACTCTATGACAATCAAGCAATAAG 57.340 34.615 0.00 0.00 0.00 1.73
3716 6143 9.534565 GTAAGACTCTATGACAATCAAGCAATA 57.465 33.333 0.00 0.00 0.00 1.90
3717 6144 8.043113 TGTAAGACTCTATGACAATCAAGCAAT 58.957 33.333 0.00 0.00 0.00 3.56
3718 6145 7.386059 TGTAAGACTCTATGACAATCAAGCAA 58.614 34.615 0.00 0.00 0.00 3.91
3719 6146 6.935167 TGTAAGACTCTATGACAATCAAGCA 58.065 36.000 0.00 0.00 0.00 3.91
3720 6147 7.547370 AGTTGTAAGACTCTATGACAATCAAGC 59.453 37.037 5.03 0.00 32.99 4.01
3721 6148 8.994429 AGTTGTAAGACTCTATGACAATCAAG 57.006 34.615 5.03 0.00 32.99 3.02
3723 6150 9.244292 ACTAGTTGTAAGACTCTATGACAATCA 57.756 33.333 0.00 0.00 32.99 2.57
3763 6190 9.965824 CCGCAAGTTATCTATTTTATTTTCCAT 57.034 29.630 0.00 0.00 0.00 3.41
3764 6191 8.410141 CCCGCAAGTTATCTATTTTATTTTCCA 58.590 33.333 0.00 0.00 0.00 3.53
3765 6192 7.381408 GCCCGCAAGTTATCTATTTTATTTTCC 59.619 37.037 0.00 0.00 0.00 3.13
3766 6193 8.135529 AGCCCGCAAGTTATCTATTTTATTTTC 58.864 33.333 0.00 0.00 0.00 2.29
3767 6194 8.007405 AGCCCGCAAGTTATCTATTTTATTTT 57.993 30.769 0.00 0.00 0.00 1.82
3768 6195 7.582667 AGCCCGCAAGTTATCTATTTTATTT 57.417 32.000 0.00 0.00 0.00 1.40
3769 6196 8.685838 TTAGCCCGCAAGTTATCTATTTTATT 57.314 30.769 0.00 0.00 0.00 1.40
3770 6197 7.094762 GCTTAGCCCGCAAGTTATCTATTTTAT 60.095 37.037 0.00 0.00 0.00 1.40
3771 6198 6.204108 GCTTAGCCCGCAAGTTATCTATTTTA 59.796 38.462 0.00 0.00 0.00 1.52
3772 6199 5.008712 GCTTAGCCCGCAAGTTATCTATTTT 59.991 40.000 0.00 0.00 0.00 1.82
3773 6200 4.515567 GCTTAGCCCGCAAGTTATCTATTT 59.484 41.667 0.00 0.00 0.00 1.40
3774 6201 4.065789 GCTTAGCCCGCAAGTTATCTATT 58.934 43.478 0.00 0.00 0.00 1.73
3775 6202 3.557264 GGCTTAGCCCGCAAGTTATCTAT 60.557 47.826 13.12 0.00 44.06 1.98
3776 6203 2.224209 GGCTTAGCCCGCAAGTTATCTA 60.224 50.000 13.12 0.00 44.06 1.98
3777 6204 1.475213 GGCTTAGCCCGCAAGTTATCT 60.475 52.381 13.12 0.00 44.06 1.98
3778 6205 0.945099 GGCTTAGCCCGCAAGTTATC 59.055 55.000 13.12 0.00 44.06 1.75
3779 6206 3.095922 GGCTTAGCCCGCAAGTTAT 57.904 52.632 13.12 0.00 44.06 1.89
3780 6207 4.629779 GGCTTAGCCCGCAAGTTA 57.370 55.556 13.12 0.00 44.06 2.24
3790 6217 3.542648 CAGGTTTAGTTAGGGGCTTAGC 58.457 50.000 0.00 0.00 0.00 3.09
3791 6218 3.542648 GCAGGTTTAGTTAGGGGCTTAG 58.457 50.000 0.00 0.00 0.00 2.18
3792 6219 2.240414 GGCAGGTTTAGTTAGGGGCTTA 59.760 50.000 0.00 0.00 0.00 3.09
3793 6220 1.005569 GGCAGGTTTAGTTAGGGGCTT 59.994 52.381 0.00 0.00 0.00 4.35
3794 6221 0.624254 GGCAGGTTTAGTTAGGGGCT 59.376 55.000 0.00 0.00 0.00 5.19
3795 6222 0.395311 GGGCAGGTTTAGTTAGGGGC 60.395 60.000 0.00 0.00 0.00 5.80
3796 6223 0.996583 TGGGCAGGTTTAGTTAGGGG 59.003 55.000 0.00 0.00 0.00 4.79
3797 6224 1.633945 ACTGGGCAGGTTTAGTTAGGG 59.366 52.381 0.00 0.00 0.00 3.53
3798 6225 2.618045 CCACTGGGCAGGTTTAGTTAGG 60.618 54.545 0.00 0.00 0.00 2.69
3799 6226 2.618045 CCCACTGGGCAGGTTTAGTTAG 60.618 54.545 0.00 0.00 35.35 2.34
3800 6227 1.353022 CCCACTGGGCAGGTTTAGTTA 59.647 52.381 0.00 0.00 35.35 2.24
3801 6228 0.112412 CCCACTGGGCAGGTTTAGTT 59.888 55.000 0.00 0.00 35.35 2.24
3802 6229 1.767692 CCCACTGGGCAGGTTTAGT 59.232 57.895 0.00 0.00 35.35 2.24
3803 6230 4.743018 CCCACTGGGCAGGTTTAG 57.257 61.111 0.00 0.00 35.35 1.85
3813 6240 2.370445 CCTGTAGGAGGCCCACTGG 61.370 68.421 0.00 2.41 34.01 4.00
3814 6241 3.313874 CCTGTAGGAGGCCCACTG 58.686 66.667 0.00 0.00 34.01 3.66
3821 6248 2.224161 GCAGACTTATGCCTGTAGGAGG 60.224 54.545 1.17 0.00 46.13 4.30
3822 6249 3.104843 GCAGACTTATGCCTGTAGGAG 57.895 52.381 1.17 0.00 40.43 3.69
3831 6258 0.179045 ATGACCGGGCAGACTTATGC 60.179 55.000 18.96 0.00 45.74 3.14
3832 6259 3.131396 GTTATGACCGGGCAGACTTATG 58.869 50.000 18.96 0.00 0.00 1.90
3833 6260 2.769663 TGTTATGACCGGGCAGACTTAT 59.230 45.455 18.96 0.00 0.00 1.73
3834 6261 2.093869 GTGTTATGACCGGGCAGACTTA 60.094 50.000 18.96 0.00 0.00 2.24
3835 6262 0.981183 TGTTATGACCGGGCAGACTT 59.019 50.000 18.96 0.00 0.00 3.01
3836 6263 0.249398 GTGTTATGACCGGGCAGACT 59.751 55.000 18.96 0.02 0.00 3.24
3837 6264 0.249398 AGTGTTATGACCGGGCAGAC 59.751 55.000 18.96 18.05 0.00 3.51
3838 6265 0.981183 AAGTGTTATGACCGGGCAGA 59.019 50.000 18.96 9.10 0.00 4.26
3839 6266 1.086696 CAAGTGTTATGACCGGGCAG 58.913 55.000 18.96 0.00 0.00 4.85
3840 6267 0.687920 TCAAGTGTTATGACCGGGCA 59.312 50.000 15.46 15.46 0.00 5.36
3841 6268 1.084289 GTCAAGTGTTATGACCGGGC 58.916 55.000 6.32 1.57 41.02 6.13
3842 6269 2.762535 AGTCAAGTGTTATGACCGGG 57.237 50.000 6.32 0.00 46.60 5.73
3843 6270 4.783242 CAAAAGTCAAGTGTTATGACCGG 58.217 43.478 0.00 0.00 46.60 5.28
3844 6271 4.219033 GCAAAAGTCAAGTGTTATGACCG 58.781 43.478 3.23 0.00 46.60 4.79
3845 6272 4.024387 TCGCAAAAGTCAAGTGTTATGACC 60.024 41.667 3.23 0.00 46.60 4.02
3846 6273 5.090652 TCGCAAAAGTCAAGTGTTATGAC 57.909 39.130 0.00 0.00 45.94 3.06
3847 6274 5.743026 TTCGCAAAAGTCAAGTGTTATGA 57.257 34.783 0.00 0.00 0.00 2.15
3848 6275 6.291585 GGTTTTCGCAAAAGTCAAGTGTTATG 60.292 38.462 0.00 0.00 0.00 1.90
3849 6276 5.746721 GGTTTTCGCAAAAGTCAAGTGTTAT 59.253 36.000 0.00 0.00 0.00 1.89
3850 6277 5.096849 GGTTTTCGCAAAAGTCAAGTGTTA 58.903 37.500 0.00 0.00 0.00 2.41
3851 6278 3.924073 GGTTTTCGCAAAAGTCAAGTGTT 59.076 39.130 0.00 0.00 0.00 3.32
3852 6279 3.507786 GGTTTTCGCAAAAGTCAAGTGT 58.492 40.909 0.00 0.00 0.00 3.55
3853 6280 2.529894 CGGTTTTCGCAAAAGTCAAGTG 59.470 45.455 0.00 0.00 0.00 3.16
3854 6281 2.420722 TCGGTTTTCGCAAAAGTCAAGT 59.579 40.909 0.00 0.00 39.05 3.16
3855 6282 3.059634 TCGGTTTTCGCAAAAGTCAAG 57.940 42.857 0.00 0.00 39.05 3.02
3856 6283 3.367607 CATCGGTTTTCGCAAAAGTCAA 58.632 40.909 0.00 0.00 39.05 3.18
3857 6284 2.856720 GCATCGGTTTTCGCAAAAGTCA 60.857 45.455 0.00 0.00 39.05 3.41
3874 6301 4.870426 CCGTCCCATAATATAGTGTGCATC 59.130 45.833 0.00 0.00 0.00 3.91
3955 6391 4.919653 TGGAACATGCGAGCTCTC 57.080 55.556 12.85 4.04 0.00 3.20
4066 6510 4.715713 ACCTTGACAAAAGAGGGAAGTAC 58.284 43.478 0.00 0.00 34.81 2.73
4209 6653 3.520569 GAAAAACACTGGTGCAACACAT 58.479 40.909 0.00 0.00 39.98 3.21
4243 6747 7.036996 TGAAATACATCAAGACAGCAAAACA 57.963 32.000 0.00 0.00 0.00 2.83
4277 6781 4.321745 CACAGTGAAAATCTTATGCAACGC 59.678 41.667 0.00 0.00 0.00 4.84
4278 6782 5.688823 TCACAGTGAAAATCTTATGCAACG 58.311 37.500 0.00 0.00 0.00 4.10
4373 6879 6.236409 AGTTCAGGCCATAAGATGATATGTG 58.764 40.000 5.01 0.00 32.48 3.21
4590 7098 2.138320 TCACGAAAGAGCTTTCTGCAG 58.862 47.619 17.85 7.63 44.93 4.41
4833 7351 7.049754 CGGGCCCTTTTACTAGTATTTCTAAA 58.950 38.462 22.43 0.25 0.00 1.85
4856 7374 2.141122 AATCCCTTTGCAACGCACGG 62.141 55.000 0.00 0.00 38.71 4.94
4869 7387 9.125026 GTGATGTTGATGATACTTTTAATCCCT 57.875 33.333 0.00 0.00 0.00 4.20
4880 7398 4.452455 GGGATTCGGTGATGTTGATGATAC 59.548 45.833 0.00 0.00 0.00 2.24
4932 7450 1.612950 CAGGTTGCCACATGCTTTACA 59.387 47.619 0.00 0.00 42.00 2.41
5002 7522 5.007234 TGCCAATCTAAAATCGGTTATGTCG 59.993 40.000 0.00 0.00 0.00 4.35
5014 7534 4.756642 CGCCTATCTCATGCCAATCTAAAA 59.243 41.667 0.00 0.00 0.00 1.52
5057 7579 1.067425 TCTACCAACATCGTTGGACCG 60.067 52.381 27.99 16.39 42.06 4.79
5099 7621 2.349755 GCCACCCGTACACCACAT 59.650 61.111 0.00 0.00 0.00 3.21
5105 7627 3.069946 CCGTAGGCCACCCGTACA 61.070 66.667 5.01 0.00 46.14 2.90
5134 7656 6.431543 CGACATACCTCTATACAATCTCACCT 59.568 42.308 0.00 0.00 0.00 4.00
5256 8106 6.294564 GGGAAAAAGACATCACTAAACCCTTC 60.295 42.308 0.00 0.00 0.00 3.46
5281 8131 5.805486 CCAGAAAATTTGCATCTGTCATCAG 59.195 40.000 14.36 0.00 39.10 2.90
5366 8216 5.766150 TTGCTGTTGTTATTGCTACAGTT 57.234 34.783 0.00 0.00 41.75 3.16
5377 8249 4.083324 GCTTGCTACTGATTGCTGTTGTTA 60.083 41.667 0.00 0.00 0.00 2.41
5378 8250 3.304928 GCTTGCTACTGATTGCTGTTGTT 60.305 43.478 0.00 0.00 0.00 2.83
5379 8251 2.227388 GCTTGCTACTGATTGCTGTTGT 59.773 45.455 0.00 0.00 0.00 3.32
5380 8252 2.726989 CGCTTGCTACTGATTGCTGTTG 60.727 50.000 0.00 0.00 0.00 3.33
5381 8253 1.466167 CGCTTGCTACTGATTGCTGTT 59.534 47.619 0.00 0.00 0.00 3.16
5382 8254 1.081892 CGCTTGCTACTGATTGCTGT 58.918 50.000 0.00 0.00 0.00 4.40
5383 8255 1.061711 GTCGCTTGCTACTGATTGCTG 59.938 52.381 0.00 0.00 0.00 4.41
5384 8256 1.338105 TGTCGCTTGCTACTGATTGCT 60.338 47.619 0.00 0.00 0.00 3.91
5385 8257 1.078709 TGTCGCTTGCTACTGATTGC 58.921 50.000 0.00 0.00 0.00 3.56
5386 8258 2.674852 ACATGTCGCTTGCTACTGATTG 59.325 45.455 0.00 0.00 0.00 2.67
5387 8259 2.932614 GACATGTCGCTTGCTACTGATT 59.067 45.455 10.69 0.00 0.00 2.57
5388 8260 2.167281 AGACATGTCGCTTGCTACTGAT 59.833 45.455 19.85 0.00 34.09 2.90
5389 8261 1.546029 AGACATGTCGCTTGCTACTGA 59.454 47.619 19.85 0.00 34.09 3.41
5390 8262 1.657594 CAGACATGTCGCTTGCTACTG 59.342 52.381 19.85 5.92 34.09 2.74
5391 8263 1.273606 ACAGACATGTCGCTTGCTACT 59.726 47.619 19.85 0.00 32.99 2.57
5392 8264 1.714794 ACAGACATGTCGCTTGCTAC 58.285 50.000 19.85 0.00 32.99 3.58
5393 8265 2.029020 AGAACAGACATGTCGCTTGCTA 60.029 45.455 19.85 0.00 39.29 3.49
5394 8266 1.151668 GAACAGACATGTCGCTTGCT 58.848 50.000 19.85 4.75 39.29 3.91
5395 8267 1.127582 GAGAACAGACATGTCGCTTGC 59.872 52.381 19.85 9.88 39.29 4.01
5396 8268 2.681706 AGAGAACAGACATGTCGCTTG 58.318 47.619 19.85 15.04 39.29 4.01
5397 8269 4.400884 AGATAGAGAACAGACATGTCGCTT 59.599 41.667 19.85 14.43 39.29 4.68
5398 8270 3.951037 AGATAGAGAACAGACATGTCGCT 59.049 43.478 19.85 15.11 39.29 4.93
5454 8326 5.303971 AGATAGATGTATGGTGCTTCTTGC 58.696 41.667 0.00 0.00 43.25 4.01
5580 8473 0.710588 TTAGGGGAGAGAGCACAGGA 59.289 55.000 0.00 0.00 0.00 3.86
5582 8475 1.208293 GGTTTAGGGGAGAGAGCACAG 59.792 57.143 0.00 0.00 0.00 3.66
5690 8589 6.127366 GCAGGTTCATTCCATCCTCAATTTAA 60.127 38.462 0.00 0.00 0.00 1.52
5719 8618 3.762293 GCAACATCTGCCACCACA 58.238 55.556 0.00 0.00 46.13 4.17
5736 8635 4.368808 CGCCGTGCCACAAGTTCG 62.369 66.667 0.00 0.00 0.00 3.95
5751 8650 1.675641 AAGTTGCTCCCCACATCGC 60.676 57.895 0.00 0.00 0.00 4.58
5752 8651 0.321564 TCAAGTTGCTCCCCACATCG 60.322 55.000 0.00 0.00 0.00 3.84
5775 8674 1.261480 TCTTCAGGACTCAGGAGCAC 58.739 55.000 0.00 0.00 0.00 4.40
5785 8684 1.953686 CGAGGAGGAGATCTTCAGGAC 59.046 57.143 3.21 0.00 33.68 3.85
5786 8685 1.133637 CCGAGGAGGAGATCTTCAGGA 60.134 57.143 3.21 0.00 45.00 3.86
5787 8686 1.327303 CCGAGGAGGAGATCTTCAGG 58.673 60.000 3.21 0.00 45.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.