Multiple sequence alignment - TraesCS5B01G110700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G110700 chr5B 100.000 4082 0 0 1 4082 162494414 162490333 0.000000e+00 7539.0
1 TraesCS5B01G110700 chr5D 95.711 3917 115 20 2 3896 170317656 170313771 0.000000e+00 6253.0
2 TraesCS5B01G110700 chr5A 95.364 3602 110 21 1 3568 176445919 176449497 0.000000e+00 5674.0
3 TraesCS5B01G110700 chr5A 85.714 483 37 14 3630 4081 176449836 176450317 7.940000e-132 481.0
4 TraesCS5B01G110700 chr5A 95.082 61 3 0 3569 3629 176449731 176449791 3.360000e-16 97.1
5 TraesCS5B01G110700 chr3A 84.000 100 13 2 3749 3845 149985409 149985508 4.340000e-15 93.5
6 TraesCS5B01G110700 chr3A 77.692 130 24 4 3749 3874 712695396 712695524 1.570000e-09 75.0
7 TraesCS5B01G110700 chr4D 86.047 86 9 2 3766 3849 37539608 37539692 5.620000e-14 89.8
8 TraesCS5B01G110700 chr7B 78.740 127 23 2 3770 3896 134628045 134627923 9.400000e-12 82.4
9 TraesCS5B01G110700 chr4A 84.722 72 6 4 3899 3965 581958123 581958194 2.630000e-07 67.6
10 TraesCS5B01G110700 chr3B 88.889 45 5 0 3902 3946 662460591 662460635 5.700000e-04 56.5
11 TraesCS5B01G110700 chr3B 100.000 29 0 0 3769 3797 173122406 173122378 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G110700 chr5B 162490333 162494414 4081 True 7539.000000 7539 100.000000 1 4082 1 chr5B.!!$R1 4081
1 TraesCS5B01G110700 chr5D 170313771 170317656 3885 True 6253.000000 6253 95.711000 2 3896 1 chr5D.!!$R1 3894
2 TraesCS5B01G110700 chr5A 176445919 176450317 4398 False 2084.033333 5674 92.053333 1 4081 3 chr5A.!!$F1 4080

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 1.152735 TCGCCGAGGCCTCTCTATT 60.153 57.895 29.73 0.0 37.86 1.73 F
1106 1115 1.160137 CGCTCAAACTTCCTTCCTGG 58.840 55.000 0.00 0.0 37.10 4.45 F
1821 1831 0.598680 GAATCTCCGATCCACCAGCG 60.599 60.000 0.00 0.0 0.00 5.18 F
2731 2741 1.413445 ACAGGCAAGAAAATTGCTGCA 59.587 42.857 11.90 0.0 44.36 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1148 1157 0.251297 AGGCATGCTTGTACAAGGCA 60.251 50.0 31.42 27.77 38.80 4.75 R
2774 2784 0.249657 TGCGTCAAAAATGGTTGCCC 60.250 50.0 0.00 0.00 0.00 5.36 R
2791 2801 1.276415 GAGTCGTCTTGAGCATCTGC 58.724 55.0 0.00 0.00 42.49 4.26 R
3885 4203 0.392461 GCACCTCCAAGTCGGCATAA 60.392 55.0 0.00 0.00 33.14 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.303054 TCTGATCTCGATTCATCTACCTCTT 58.697 40.000 0.00 0.00 0.00 2.85
117 118 1.152735 TCGCCGAGGCCTCTCTATT 60.153 57.895 29.73 0.00 37.86 1.73
278 279 4.894784 TGAGATCCTATTATTGCGGTTCC 58.105 43.478 0.00 0.00 0.00 3.62
328 329 1.287041 GGGTTTCGTCGTTTCCCTCG 61.287 60.000 11.80 0.00 35.63 4.63
581 590 1.691976 GGGTGATCCATGGATGTCGTA 59.308 52.381 32.05 9.71 34.60 3.43
605 614 3.366781 GGAGCTTGCTTCCAAATTCTCAC 60.367 47.826 0.00 0.00 34.74 3.51
775 784 2.477863 GCAATCGATTTGTGCACCCTAC 60.478 50.000 15.69 2.81 38.19 3.18
805 814 1.659211 GCGCACTTGAAGGTTTGTACG 60.659 52.381 0.30 0.00 0.00 3.67
856 865 5.735285 TGGATGTTCATTTGCAATTGGTA 57.265 34.783 18.52 7.09 0.00 3.25
857 866 6.297080 TGGATGTTCATTTGCAATTGGTAT 57.703 33.333 18.52 11.57 0.00 2.73
858 867 7.415592 TGGATGTTCATTTGCAATTGGTATA 57.584 32.000 18.52 8.28 0.00 1.47
887 896 5.668558 AACACAATACGTTTCCTCTTCAC 57.331 39.130 0.00 0.00 0.00 3.18
893 902 3.107642 ACGTTTCCTCTTCACGATGTT 57.892 42.857 0.00 0.00 37.37 2.71
914 923 4.832590 TTAGCTATCGTTCTAGTCCTGC 57.167 45.455 0.00 0.00 0.00 4.85
915 924 2.656002 AGCTATCGTTCTAGTCCTGCA 58.344 47.619 0.00 0.00 0.00 4.41
939 948 3.067106 GTGATCACCCGGTGCAATATAG 58.933 50.000 15.31 0.00 32.98 1.31
1044 1053 2.290323 GGTTTATGTGAGGCACCACTCT 60.290 50.000 10.57 2.63 38.32 3.24
1106 1115 1.160137 CGCTCAAACTTCCTTCCTGG 58.840 55.000 0.00 0.00 37.10 4.45
1133 1142 3.013921 ACCATATTGCAACAGGTAACGG 58.986 45.455 15.40 6.36 46.39 4.44
1148 1157 2.961768 CGGCTGCCATTTCCGTTT 59.038 55.556 20.29 0.00 38.47 3.60
1183 1192 1.908619 TGCCTAGATTCTTGTGCCAGA 59.091 47.619 0.00 0.00 0.00 3.86
1243 1252 4.467769 AGCCAATCTGATGAATAGTTGGG 58.532 43.478 6.19 0.00 37.24 4.12
1295 1304 7.713734 ACCACAGCTTGTCTAGTTAATACTA 57.286 36.000 0.00 0.00 35.78 1.82
1473 1482 7.195839 ACAGAAACTTTTGATACTCTGCTTC 57.804 36.000 0.00 0.00 34.89 3.86
1475 1484 7.041508 ACAGAAACTTTTGATACTCTGCTTCTG 60.042 37.037 0.00 0.00 41.01 3.02
1602 1612 8.377799 TGTTATGCATGATTGAGATAGTATGGT 58.622 33.333 10.16 0.00 0.00 3.55
1654 1664 1.805428 ATTTCCCTGTTGCGTGTGGC 61.805 55.000 0.00 0.00 43.96 5.01
1676 1686 3.081061 TGTCCATTACTGCCATGTGTTC 58.919 45.455 0.00 0.00 0.00 3.18
1678 1688 2.308570 TCCATTACTGCCATGTGTTCCT 59.691 45.455 0.00 0.00 0.00 3.36
1679 1689 3.521531 TCCATTACTGCCATGTGTTCCTA 59.478 43.478 0.00 0.00 0.00 2.94
1680 1690 4.165950 TCCATTACTGCCATGTGTTCCTAT 59.834 41.667 0.00 0.00 0.00 2.57
1681 1691 5.368230 TCCATTACTGCCATGTGTTCCTATA 59.632 40.000 0.00 0.00 0.00 1.31
1821 1831 0.598680 GAATCTCCGATCCACCAGCG 60.599 60.000 0.00 0.00 0.00 5.18
2099 2109 6.173339 ACATATGTGATATAAAGGAAGCCGG 58.827 40.000 7.78 0.00 0.00 6.13
2127 2137 5.071788 TGACAAGTGGATTAGGAACTCTGTT 59.928 40.000 0.00 0.00 41.75 3.16
2273 2283 4.287067 AGAAAGACTAATGAGTGCCCTTGA 59.713 41.667 0.00 0.00 35.45 3.02
2664 2674 5.734140 TCAAGTTCCCCTCCAAGGAAATATA 59.266 40.000 0.00 0.00 44.84 0.86
2731 2741 1.413445 ACAGGCAAGAAAATTGCTGCA 59.587 42.857 11.90 0.00 44.36 4.41
2774 2784 1.519408 CTTGTGGACGTTAACCAGGG 58.481 55.000 0.00 0.00 38.14 4.45
2973 2983 4.196971 GGGATATTGGTTTCAGTAGCGTT 58.803 43.478 0.00 0.00 0.00 4.84
3032 3042 5.309543 TGATAGAAGAGGTGTTTGGAAAGGA 59.690 40.000 0.00 0.00 0.00 3.36
3137 3147 4.025813 CCGAACCTGCTTTTGAAATTTGTG 60.026 41.667 0.00 0.00 0.00 3.33
3153 3163 0.038251 TGTGCAGTGGTAGCTCTTCG 60.038 55.000 0.00 0.00 0.00 3.79
3444 3465 7.119846 GCTTTCCTTCTACTTGCATCTTTTCTA 59.880 37.037 0.00 0.00 0.00 2.10
3677 3992 2.024464 CCATCCCCACTTTTGATACCCA 60.024 50.000 0.00 0.00 0.00 4.51
3685 4000 5.010282 CCACTTTTGATACCCAGCTAAACT 58.990 41.667 0.00 0.00 0.00 2.66
3691 4006 4.037222 TGATACCCAGCTAAACTCATCCA 58.963 43.478 0.00 0.00 0.00 3.41
3703 4018 7.941238 AGCTAAACTCATCCATAGCAATATGTT 59.059 33.333 6.43 0.00 42.45 2.71
3704 4019 8.233190 GCTAAACTCATCCATAGCAATATGTTC 58.767 37.037 0.00 0.00 40.32 3.18
3708 4023 6.939163 ACTCATCCATAGCAATATGTTCTTCC 59.061 38.462 0.00 0.00 0.00 3.46
3796 4114 8.397906 TGCTCGTATTTTCTGGATTTATTTCAG 58.602 33.333 0.00 0.00 0.00 3.02
3862 4180 4.559835 CGAGGCGCGTATGATGAT 57.440 55.556 8.43 0.00 34.64 2.45
3865 4183 1.526887 CGAGGCGCGTATGATGATTTT 59.473 47.619 8.43 0.00 34.64 1.82
3893 4211 9.061435 TCAATCAATGTTAATATGTTATGCCGA 57.939 29.630 0.00 0.00 0.00 5.54
3896 4214 8.445275 TCAATGTTAATATGTTATGCCGACTT 57.555 30.769 0.00 0.00 0.00 3.01
3898 4216 6.612247 TGTTAATATGTTATGCCGACTTGG 57.388 37.500 0.00 0.00 42.50 3.61
3899 4217 6.350103 TGTTAATATGTTATGCCGACTTGGA 58.650 36.000 0.00 0.00 42.00 3.53
3900 4218 6.481976 TGTTAATATGTTATGCCGACTTGGAG 59.518 38.462 0.00 0.00 42.00 3.86
3901 4219 2.332063 ATGTTATGCCGACTTGGAGG 57.668 50.000 0.00 0.00 42.00 4.30
3903 4221 1.338674 TGTTATGCCGACTTGGAGGTG 60.339 52.381 0.00 0.00 42.00 4.00
3904 4222 0.392461 TTATGCCGACTTGGAGGTGC 60.392 55.000 0.00 0.00 42.00 5.01
3905 4223 2.572095 TATGCCGACTTGGAGGTGCG 62.572 60.000 0.00 0.00 42.00 5.34
3906 4224 4.681978 GCCGACTTGGAGGTGCGT 62.682 66.667 0.00 0.00 42.00 5.24
3908 4226 2.029073 CGACTTGGAGGTGCGTGT 59.971 61.111 0.00 0.00 0.00 4.49
3909 4227 2.310233 CGACTTGGAGGTGCGTGTG 61.310 63.158 0.00 0.00 0.00 3.82
3910 4228 1.227556 GACTTGGAGGTGCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
3911 4229 0.814010 GACTTGGAGGTGCGTGTGTT 60.814 55.000 0.00 0.00 0.00 3.32
3912 4230 0.814010 ACTTGGAGGTGCGTGTGTTC 60.814 55.000 0.00 0.00 0.00 3.18
3913 4231 0.813610 CTTGGAGGTGCGTGTGTTCA 60.814 55.000 0.00 0.00 0.00 3.18
3914 4232 0.179032 TTGGAGGTGCGTGTGTTCAT 60.179 50.000 0.00 0.00 0.00 2.57
3923 4269 2.263077 GCGTGTGTTCATAGAGGTGAG 58.737 52.381 0.00 0.00 0.00 3.51
3930 4276 5.480422 TGTGTTCATAGAGGTGAGTGTATGT 59.520 40.000 0.00 0.00 0.00 2.29
3944 4290 7.254455 GGTGAGTGTATGTTCATGTATGTAAGC 60.254 40.741 0.00 0.00 0.00 3.09
3958 4304 6.376177 TGTATGTAAGCGATTTCGATCGTAT 58.624 36.000 15.94 9.95 45.11 3.06
3965 4311 5.038683 AGCGATTTCGATCGTATTGTGTTA 58.961 37.500 15.94 0.00 45.11 2.41
4039 4385 8.109705 TCATATTGTTTCAAACACACATAGCT 57.890 30.769 1.28 0.00 41.97 3.32
4060 4406 4.866486 GCTCAACATCAATTCAAATCCACC 59.134 41.667 0.00 0.00 0.00 4.61
4071 4417 5.936187 TTCAAATCCACCACATATGCAAT 57.064 34.783 1.58 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 2.585698 GGGGCGAAATCGGTACCA 59.414 61.111 13.54 0.00 40.23 3.25
278 279 2.158017 TCGCGCAAATTCGATGAAAG 57.842 45.000 8.75 0.00 0.00 2.62
343 344 2.849096 TACTGGCGATGAGGGGTCGT 62.849 60.000 0.00 0.00 40.98 4.34
424 425 1.407299 CGATGAATCCAAGCCTGGTCA 60.407 52.381 0.15 0.00 43.97 4.02
540 541 4.219725 CCCGGTCAATTCAAATAGGTTTGT 59.780 41.667 0.00 0.00 44.03 2.83
562 564 3.329386 CATACGACATCCATGGATCACC 58.671 50.000 24.93 14.57 31.62 4.02
563 565 3.006859 TCCATACGACATCCATGGATCAC 59.993 47.826 24.93 18.65 42.55 3.06
581 590 3.438183 AGAATTTGGAAGCAAGCTCCAT 58.562 40.909 11.98 1.32 33.06 3.41
605 614 3.461773 ACGGCCGTGATCTCCCTG 61.462 66.667 33.75 0.00 0.00 4.45
670 679 7.849804 AAACTATAGAAGGTGCAACACATAG 57.150 36.000 3.64 7.39 39.98 2.23
671 680 8.537016 ACTAAACTATAGAAGGTGCAACACATA 58.463 33.333 3.64 0.00 39.98 2.29
775 784 0.592637 TCAAGTGCGCATCACCAAAG 59.407 50.000 15.91 0.00 46.81 2.77
805 814 0.038526 CTACCACCGACCACACTGAC 60.039 60.000 0.00 0.00 0.00 3.51
858 867 9.498176 AAGAGGAAACGTATTGTGTTACTTATT 57.502 29.630 0.00 0.00 0.00 1.40
893 902 4.036498 GTGCAGGACTAGAACGATAGCTAA 59.964 45.833 0.00 0.00 42.67 3.09
914 923 2.034879 GCACCGGGTGATCACTGTG 61.035 63.158 30.65 25.25 35.23 3.66
915 924 2.050836 TTGCACCGGGTGATCACTGT 62.051 55.000 30.65 16.14 35.23 3.55
939 948 8.931385 ACAAAATGATGGCAAATAGATACAAC 57.069 30.769 0.00 0.00 0.00 3.32
1044 1053 2.632544 GCCACATGCAAGCTGCTCA 61.633 57.895 1.00 0.00 45.31 4.26
1106 1115 5.852282 ACCTGTTGCAATATGGTATTTCC 57.148 39.130 16.00 0.00 0.00 3.13
1133 1142 1.737735 GGCAAACGGAAATGGCAGC 60.738 57.895 0.00 0.00 41.38 5.25
1145 1154 2.061028 GCATGCTTGTACAAGGCAAAC 58.939 47.619 31.42 21.20 38.80 2.93
1148 1157 0.251297 AGGCATGCTTGTACAAGGCA 60.251 50.000 31.42 27.77 38.80 4.75
1221 1230 4.467769 CCCAACTATTCATCAGATTGGCT 58.532 43.478 0.00 0.00 36.15 4.75
1243 1252 7.330262 TCCATTCTGAAATTCCAAAATTAGGC 58.670 34.615 0.00 0.00 33.93 3.93
1295 1304 3.877508 GTCACTTCTTTAACAGCACTGGT 59.122 43.478 2.21 0.00 34.19 4.00
1452 1461 7.195839 ACAGAAGCAGAGTATCAAAAGTTTC 57.804 36.000 0.00 0.00 37.82 2.78
1467 1476 6.422223 CAAAGTGTAAAGTGTACAGAAGCAG 58.578 40.000 0.00 0.00 0.00 4.24
1468 1477 5.220777 GCAAAGTGTAAAGTGTACAGAAGCA 60.221 40.000 0.00 0.00 0.00 3.91
1473 1482 5.295787 TGGAAGCAAAGTGTAAAGTGTACAG 59.704 40.000 0.00 0.00 0.00 2.74
1475 1484 5.744666 TGGAAGCAAAGTGTAAAGTGTAC 57.255 39.130 0.00 0.00 0.00 2.90
1555 1565 4.043859 TCACGTAGGGGTGATGGG 57.956 61.111 0.00 0.00 41.76 4.00
1602 1612 3.260380 CACAAAGATGGCCAAAATACCCA 59.740 43.478 10.96 0.00 0.00 4.51
1654 1664 2.715046 ACACATGGCAGTAATGGACAG 58.285 47.619 0.00 0.00 0.00 3.51
1679 1689 8.641541 CCCAATCAGCACTTTGGTTTTATATAT 58.358 33.333 9.75 0.00 40.68 0.86
1680 1690 7.617723 ACCCAATCAGCACTTTGGTTTTATATA 59.382 33.333 9.75 0.00 40.68 0.86
1681 1691 6.440328 ACCCAATCAGCACTTTGGTTTTATAT 59.560 34.615 9.75 0.00 40.68 0.86
1706 1716 7.707624 ACAGCTGAAATGGAGAAAATATGAA 57.292 32.000 23.35 0.00 0.00 2.57
1815 1825 1.310933 CCTCACTACCGTACGCTGGT 61.311 60.000 10.49 0.91 43.62 4.00
1821 1831 3.119566 CCTCACTTTCCTCACTACCGTAC 60.120 52.174 0.00 0.00 0.00 3.67
2099 2109 4.020128 AGTTCCTAATCCACTTGTCACTCC 60.020 45.833 0.00 0.00 0.00 3.85
2273 2283 6.043243 TCCTAACTCTTTGAAGGTGTTCAGAT 59.957 38.462 0.00 0.00 43.66 2.90
2474 2484 1.004044 CAGCCCTCTTCCTCAACATGT 59.996 52.381 0.00 0.00 0.00 3.21
2664 2674 2.830923 CTCCTCACCAGACTCTTCATGT 59.169 50.000 0.00 0.00 0.00 3.21
2731 2741 1.216175 CACCATGACATTCCCCTCCAT 59.784 52.381 0.00 0.00 0.00 3.41
2764 2774 0.252057 ATGGTTGCCCCCTGGTTAAC 60.252 55.000 0.00 0.00 33.05 2.01
2765 2775 0.489567 AATGGTTGCCCCCTGGTTAA 59.510 50.000 0.00 0.00 0.00 2.01
2774 2784 0.249657 TGCGTCAAAAATGGTTGCCC 60.250 50.000 0.00 0.00 0.00 5.36
2791 2801 1.276415 GAGTCGTCTTGAGCATCTGC 58.724 55.000 0.00 0.00 42.49 4.26
3032 3042 8.186709 AGAGTCATTTCCATTTTCACAAGAAT 57.813 30.769 0.00 0.00 32.89 2.40
3137 3147 1.797025 AAACGAAGAGCTACCACTGC 58.203 50.000 0.00 0.00 0.00 4.40
3164 3175 3.785486 TCTACAGGCAAGTGAATCATCG 58.215 45.455 0.00 0.00 0.00 3.84
3444 3465 7.071196 TGCTTTGGGAGTGTCATCTACTTATAT 59.929 37.037 0.00 0.00 0.00 0.86
3558 3596 4.085357 TGCAGTTCAGTATTTGTCAGGT 57.915 40.909 0.00 0.00 0.00 4.00
3677 3992 7.456725 ACATATTGCTATGGATGAGTTTAGCT 58.543 34.615 0.00 0.00 39.29 3.32
3685 4000 5.934043 CGGAAGAACATATTGCTATGGATGA 59.066 40.000 0.00 0.00 39.29 2.92
3691 4006 3.990092 TCGCGGAAGAACATATTGCTAT 58.010 40.909 6.13 0.00 0.00 2.97
3703 4018 1.301401 CAGGTTGGTTCGCGGAAGA 60.301 57.895 6.13 0.00 0.00 2.87
3704 4019 2.325082 CCAGGTTGGTTCGCGGAAG 61.325 63.158 6.13 0.00 31.35 3.46
3708 4023 2.398554 CCATCCAGGTTGGTTCGCG 61.399 63.158 8.32 0.00 39.03 5.87
3796 4114 7.693951 CCACTCAACAAATATCATCGAAAAGTC 59.306 37.037 0.00 0.00 0.00 3.01
3813 4131 3.244561 GGAATGTCTTCTCCCACTCAACA 60.245 47.826 0.00 0.00 0.00 3.33
3885 4203 0.392461 GCACCTCCAAGTCGGCATAA 60.392 55.000 0.00 0.00 33.14 1.90
3893 4211 0.814010 GAACACACGCACCTCCAAGT 60.814 55.000 0.00 0.00 0.00 3.16
3896 4214 0.682292 TATGAACACACGCACCTCCA 59.318 50.000 0.00 0.00 0.00 3.86
3898 4216 2.263077 CTCTATGAACACACGCACCTC 58.737 52.381 0.00 0.00 0.00 3.85
3899 4217 1.066858 CCTCTATGAACACACGCACCT 60.067 52.381 0.00 0.00 0.00 4.00
3900 4218 1.337823 ACCTCTATGAACACACGCACC 60.338 52.381 0.00 0.00 0.00 5.01
3901 4219 1.726791 CACCTCTATGAACACACGCAC 59.273 52.381 0.00 0.00 0.00 5.34
3903 4221 2.263077 CTCACCTCTATGAACACACGC 58.737 52.381 0.00 0.00 0.00 5.34
3904 4222 3.245797 CACTCACCTCTATGAACACACG 58.754 50.000 0.00 0.00 0.00 4.49
3905 4223 4.258702 ACACTCACCTCTATGAACACAC 57.741 45.455 0.00 0.00 0.00 3.82
3906 4224 5.480422 ACATACACTCACCTCTATGAACACA 59.520 40.000 0.00 0.00 0.00 3.72
3908 4226 6.210584 TGAACATACACTCACCTCTATGAACA 59.789 38.462 0.00 0.00 0.00 3.18
3909 4227 6.631016 TGAACATACACTCACCTCTATGAAC 58.369 40.000 0.00 0.00 0.00 3.18
3910 4228 6.850752 TGAACATACACTCACCTCTATGAA 57.149 37.500 0.00 0.00 0.00 2.57
3911 4229 6.381133 ACATGAACATACACTCACCTCTATGA 59.619 38.462 0.00 0.00 0.00 2.15
3912 4230 6.577103 ACATGAACATACACTCACCTCTATG 58.423 40.000 0.00 0.00 0.00 2.23
3913 4231 6.798427 ACATGAACATACACTCACCTCTAT 57.202 37.500 0.00 0.00 0.00 1.98
3914 4232 7.342026 ACATACATGAACATACACTCACCTCTA 59.658 37.037 0.00 0.00 0.00 2.43
3923 4269 6.822073 TCGCTTACATACATGAACATACAC 57.178 37.500 0.00 0.00 0.00 2.90
3930 4276 7.105494 GATCGAAATCGCTTACATACATGAA 57.895 36.000 0.00 0.00 39.60 2.57
4037 4383 4.866486 GGTGGATTTGAATTGATGTTGAGC 59.134 41.667 0.00 0.00 0.00 4.26
4039 4385 5.303845 TGTGGTGGATTTGAATTGATGTTGA 59.696 36.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.