Multiple sequence alignment - TraesCS5B01G110200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G110200 chr5B 100.000 2287 0 0 1 2287 158773435 158771149 0.000000e+00 4224.0
1 TraesCS5B01G110200 chr5B 89.721 681 60 7 903 1576 146258138 146257461 0.000000e+00 861.0
2 TraesCS5B01G110200 chr5B 81.806 731 99 24 1577 2287 96014629 96013913 1.180000e-162 582.0
3 TraesCS5B01G110200 chr5B 83.080 526 72 10 396 919 146258670 146258160 1.600000e-126 462.0
4 TraesCS5B01G110200 chr5B 93.281 253 7 6 66 309 235766126 235765875 4.640000e-97 364.0
5 TraesCS5B01G110200 chr5D 83.036 1291 148 34 302 1555 507868862 507867606 0.000000e+00 1105.0
6 TraesCS5B01G110200 chr5D 81.640 1329 175 39 293 1576 404764895 404766199 0.000000e+00 1038.0
7 TraesCS5B01G110200 chr5D 80.776 593 81 17 304 879 24920588 24921164 1.250000e-117 433.0
8 TraesCS5B01G110200 chr5D 87.798 336 11 6 1 307 322982795 322983129 1.290000e-97 366.0
9 TraesCS5B01G110200 chr5D 93.574 249 8 5 66 307 206104712 206104465 4.640000e-97 364.0
10 TraesCS5B01G110200 chr5D 81.818 165 21 7 355 514 398359002 398359162 1.840000e-26 130.0
11 TraesCS5B01G110200 chr5A 81.050 1314 173 39 302 1576 577438164 577439440 0.000000e+00 977.0
12 TraesCS5B01G110200 chr5A 90.923 672 50 6 911 1576 619442616 619443282 0.000000e+00 893.0
13 TraesCS5B01G110200 chr5A 82.805 221 33 4 302 520 457002586 457002369 2.320000e-45 193.0
14 TraesCS5B01G110200 chr5A 81.457 151 26 2 355 504 531022493 531022344 3.090000e-24 122.0
15 TraesCS5B01G110200 chr1D 92.377 669 46 3 911 1576 263074959 263075625 0.000000e+00 948.0
16 TraesCS5B01G110200 chr1D 83.256 645 77 12 302 919 263074291 263074931 4.270000e-157 564.0
17 TraesCS5B01G110200 chr1D 75.131 571 93 30 344 890 454302523 454301978 2.960000e-54 222.0
18 TraesCS5B01G110200 chr1D 87.671 73 9 0 911 983 418099381 418099309 4.050000e-13 86.1
19 TraesCS5B01G110200 chr1D 90.909 55 3 1 903 957 402292479 402292531 3.150000e-09 73.1
20 TraesCS5B01G110200 chr4B 91.876 677 42 9 903 1575 662000683 662000016 0.000000e+00 933.0
21 TraesCS5B01G110200 chr4B 91.642 670 51 4 911 1576 650773026 650773694 0.000000e+00 922.0
22 TraesCS5B01G110200 chr4B 84.421 751 59 23 1573 2287 295716668 295717396 0.000000e+00 686.0
23 TraesCS5B01G110200 chr4B 73.748 739 132 54 1573 2287 336329289 336329989 1.370000e-57 233.0
24 TraesCS5B01G110200 chr4B 90.816 98 9 0 2190 2287 286333802 286333899 5.130000e-27 132.0
25 TraesCS5B01G110200 chr4B 91.304 92 8 0 419 510 514489341 514489250 2.390000e-25 126.0
26 TraesCS5B01G110200 chr7D 91.581 677 46 6 903 1576 33715226 33715894 0.000000e+00 924.0
27 TraesCS5B01G110200 chr7D 88.095 336 10 7 1 307 364747665 364747999 2.770000e-99 372.0
28 TraesCS5B01G110200 chr7D 86.378 323 12 8 1 294 474078822 474079141 7.880000e-85 324.0
29 TraesCS5B01G110200 chr7D 84.362 243 22 10 691 919 56841229 56841469 8.220000e-55 224.0
30 TraesCS5B01G110200 chr7D 73.718 312 50 20 596 889 633536762 633536465 2.420000e-15 93.5
31 TraesCS5B01G110200 chr7D 93.182 44 1 2 472 514 161189536 161189578 1.900000e-06 63.9
32 TraesCS5B01G110200 chr3A 90.441 680 55 7 901 1576 583741461 583740788 0.000000e+00 887.0
33 TraesCS5B01G110200 chr3A 90.774 672 48 9 911 1576 711213926 711213263 0.000000e+00 885.0
34 TraesCS5B01G110200 chr3A 80.564 638 87 21 302 919 711214574 711213954 7.450000e-125 457.0
35 TraesCS5B01G110200 chr6A 90.103 677 52 9 903 1576 216459273 216459937 0.000000e+00 865.0
36 TraesCS5B01G110200 chr6A 81.458 631 79 22 302 914 216458636 216459246 1.230000e-132 483.0
37 TraesCS5B01G110200 chr6A 79.221 616 79 22 302 906 50121936 50121359 1.280000e-102 383.0
38 TraesCS5B01G110200 chr6A 79.365 126 26 0 380 505 224607808 224607933 3.130000e-14 89.8
39 TraesCS5B01G110200 chr6B 89.211 621 59 8 1575 2192 324999461 325000076 0.000000e+00 769.0
40 TraesCS5B01G110200 chr6B 89.537 583 57 4 1574 2155 316927370 316926791 0.000000e+00 736.0
41 TraesCS5B01G110200 chr6B 87.781 622 70 6 1574 2192 325015363 325015981 0.000000e+00 723.0
42 TraesCS5B01G110200 chr6B 87.541 305 29 4 1 296 475702964 475702660 6.050000e-91 344.0
43 TraesCS5B01G110200 chr6B 76.190 210 44 5 299 505 698016175 698016381 3.110000e-19 106.0
44 TraesCS5B01G110200 chr7B 89.085 623 59 8 1574 2191 377538058 377538676 0.000000e+00 765.0
45 TraesCS5B01G110200 chr7B 87.680 625 61 12 1574 2192 504761556 504762170 0.000000e+00 713.0
46 TraesCS5B01G110200 chr7B 79.682 566 88 23 1577 2133 363212737 363212190 1.280000e-102 383.0
47 TraesCS5B01G110200 chr7B 75.332 754 122 47 1574 2287 413229697 413230426 1.030000e-78 303.0
48 TraesCS5B01G110200 chr7B 82.171 258 39 6 318 575 156756842 156757092 4.950000e-52 215.0
49 TraesCS5B01G110200 chr1B 89.106 615 65 2 1579 2192 218400747 218401360 0.000000e+00 763.0
50 TraesCS5B01G110200 chr1B 84.196 734 90 15 1574 2287 227915084 227914357 0.000000e+00 689.0
51 TraesCS5B01G110200 chr1B 79.221 616 75 16 302 903 465383352 465382776 1.660000e-101 379.0
52 TraesCS5B01G110200 chr1B 74.954 543 85 32 379 897 658948074 658948589 3.850000e-48 202.0
53 TraesCS5B01G110200 chr1B 78.698 169 29 4 758 919 623881887 623882055 3.110000e-19 106.0
54 TraesCS5B01G110200 chr1B 82.759 116 16 4 401 514 403992248 403992361 1.450000e-17 100.0
55 TraesCS5B01G110200 chrUn 89.032 620 61 6 1575 2192 78591787 78591173 0.000000e+00 761.0
56 TraesCS5B01G110200 chr2B 87.601 621 69 8 1574 2191 139614465 139615080 0.000000e+00 713.0
57 TraesCS5B01G110200 chr2B 82.564 390 49 12 553 924 687465702 687465314 2.190000e-85 326.0
58 TraesCS5B01G110200 chr2B 89.011 91 10 0 2192 2282 519003373 519003283 1.860000e-21 113.0
59 TraesCS5B01G110200 chr2B 85.417 96 12 2 2193 2287 509628372 509628466 5.200000e-17 99.0
60 TraesCS5B01G110200 chr4A 81.350 622 98 10 302 909 673409033 673409650 7.340000e-135 490.0
61 TraesCS5B01G110200 chr4A 76.344 558 85 21 358 900 677817895 677818420 2.920000e-64 255.0
62 TraesCS5B01G110200 chr3B 77.487 764 99 49 1574 2287 677171644 677170904 7.660000e-105 390.0
63 TraesCS5B01G110200 chr3B 82.075 212 29 7 306 514 125668540 125668745 3.020000e-39 172.0
64 TraesCS5B01G110200 chr3B 81.720 186 29 3 325 510 125776344 125776524 1.420000e-32 150.0
65 TraesCS5B01G110200 chr7A 88.855 332 10 6 1 307 202984509 202984180 1.280000e-102 383.0
66 TraesCS5B01G110200 chr7A 88.393 336 9 6 1 307 62740901 62741235 5.960000e-101 377.0
67 TraesCS5B01G110200 chr7A 80.890 382 58 9 553 919 668499374 668498993 1.030000e-73 287.0
68 TraesCS5B01G110200 chr2D 88.095 336 10 6 1 307 463874052 463874386 2.770000e-99 372.0
69 TraesCS5B01G110200 chr2D 80.247 405 64 9 302 706 410414004 410413616 7.990000e-75 291.0
70 TraesCS5B01G110200 chr2D 77.801 482 70 26 462 919 83912087 83911619 1.740000e-66 263.0
71 TraesCS5B01G110200 chr1A 93.281 253 7 5 66 309 447066337 447066086 4.640000e-97 364.0
72 TraesCS5B01G110200 chr1A 87.385 325 12 5 1 296 116167565 116167241 1.680000e-91 346.0
73 TraesCS5B01G110200 chr1A 75.272 368 62 14 534 891 547947167 547946819 5.090000e-32 148.0
74 TraesCS5B01G110200 chr1A 73.600 500 74 33 462 919 7196493 7196976 3.060000e-29 139.0
75 TraesCS5B01G110200 chr4D 78.238 579 96 16 356 919 432417919 432418482 6.050000e-91 344.0
76 TraesCS5B01G110200 chr4D 84.667 150 21 1 302 451 465180181 465180328 5.090000e-32 148.0
77 TraesCS5B01G110200 chr6D 87.077 325 13 4 1 296 400693789 400693465 7.820000e-90 340.0
78 TraesCS5B01G110200 chr6D 84.985 333 24 15 1 309 84074687 84075017 4.740000e-82 315.0
79 TraesCS5B01G110200 chr6D 84.444 315 22 14 1 307 430840094 430839799 3.720000e-73 285.0
80 TraesCS5B01G110200 chr6D 77.838 370 48 23 544 890 470662460 470662818 4.980000e-47 198.0
81 TraesCS5B01G110200 chr3D 86.810 326 12 7 1 296 225853621 225853945 3.640000e-88 335.0
82 TraesCS5B01G110200 chr3D 85.849 318 31 10 1 309 603693832 603693520 2.190000e-85 326.0
83 TraesCS5B01G110200 chr3D 89.474 95 10 0 417 511 566924582 566924488 1.110000e-23 121.0
84 TraesCS5B01G110200 chr2A 77.893 484 72 15 424 891 756935840 756935376 3.740000e-68 268.0
85 TraesCS5B01G110200 chr2A 82.390 159 28 0 355 513 694449581 694449423 3.060000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G110200 chr5B 158771149 158773435 2286 True 4224.0 4224 100.0000 1 2287 1 chr5B.!!$R2 2286
1 TraesCS5B01G110200 chr5B 146257461 146258670 1209 True 661.5 861 86.4005 396 1576 2 chr5B.!!$R4 1180
2 TraesCS5B01G110200 chr5B 96013913 96014629 716 True 582.0 582 81.8060 1577 2287 1 chr5B.!!$R1 710
3 TraesCS5B01G110200 chr5D 507867606 507868862 1256 True 1105.0 1105 83.0360 302 1555 1 chr5D.!!$R2 1253
4 TraesCS5B01G110200 chr5D 404764895 404766199 1304 False 1038.0 1038 81.6400 293 1576 1 chr5D.!!$F4 1283
5 TraesCS5B01G110200 chr5D 24920588 24921164 576 False 433.0 433 80.7760 304 879 1 chr5D.!!$F1 575
6 TraesCS5B01G110200 chr5A 577438164 577439440 1276 False 977.0 977 81.0500 302 1576 1 chr5A.!!$F1 1274
7 TraesCS5B01G110200 chr5A 619442616 619443282 666 False 893.0 893 90.9230 911 1576 1 chr5A.!!$F2 665
8 TraesCS5B01G110200 chr1D 263074291 263075625 1334 False 756.0 948 87.8165 302 1576 2 chr1D.!!$F2 1274
9 TraesCS5B01G110200 chr1D 454301978 454302523 545 True 222.0 222 75.1310 344 890 1 chr1D.!!$R2 546
10 TraesCS5B01G110200 chr4B 662000016 662000683 667 True 933.0 933 91.8760 903 1575 1 chr4B.!!$R2 672
11 TraesCS5B01G110200 chr4B 650773026 650773694 668 False 922.0 922 91.6420 911 1576 1 chr4B.!!$F4 665
12 TraesCS5B01G110200 chr4B 295716668 295717396 728 False 686.0 686 84.4210 1573 2287 1 chr4B.!!$F2 714
13 TraesCS5B01G110200 chr4B 336329289 336329989 700 False 233.0 233 73.7480 1573 2287 1 chr4B.!!$F3 714
14 TraesCS5B01G110200 chr7D 33715226 33715894 668 False 924.0 924 91.5810 903 1576 1 chr7D.!!$F1 673
15 TraesCS5B01G110200 chr3A 583740788 583741461 673 True 887.0 887 90.4410 901 1576 1 chr3A.!!$R1 675
16 TraesCS5B01G110200 chr3A 711213263 711214574 1311 True 671.0 885 85.6690 302 1576 2 chr3A.!!$R2 1274
17 TraesCS5B01G110200 chr6A 216458636 216459937 1301 False 674.0 865 85.7805 302 1576 2 chr6A.!!$F2 1274
18 TraesCS5B01G110200 chr6A 50121359 50121936 577 True 383.0 383 79.2210 302 906 1 chr6A.!!$R1 604
19 TraesCS5B01G110200 chr6B 324999461 325000076 615 False 769.0 769 89.2110 1575 2192 1 chr6B.!!$F1 617
20 TraesCS5B01G110200 chr6B 316926791 316927370 579 True 736.0 736 89.5370 1574 2155 1 chr6B.!!$R1 581
21 TraesCS5B01G110200 chr6B 325015363 325015981 618 False 723.0 723 87.7810 1574 2192 1 chr6B.!!$F2 618
22 TraesCS5B01G110200 chr7B 377538058 377538676 618 False 765.0 765 89.0850 1574 2191 1 chr7B.!!$F2 617
23 TraesCS5B01G110200 chr7B 504761556 504762170 614 False 713.0 713 87.6800 1574 2192 1 chr7B.!!$F4 618
24 TraesCS5B01G110200 chr7B 363212190 363212737 547 True 383.0 383 79.6820 1577 2133 1 chr7B.!!$R1 556
25 TraesCS5B01G110200 chr7B 413229697 413230426 729 False 303.0 303 75.3320 1574 2287 1 chr7B.!!$F3 713
26 TraesCS5B01G110200 chr1B 218400747 218401360 613 False 763.0 763 89.1060 1579 2192 1 chr1B.!!$F1 613
27 TraesCS5B01G110200 chr1B 227914357 227915084 727 True 689.0 689 84.1960 1574 2287 1 chr1B.!!$R1 713
28 TraesCS5B01G110200 chr1B 465382776 465383352 576 True 379.0 379 79.2210 302 903 1 chr1B.!!$R2 601
29 TraesCS5B01G110200 chr1B 658948074 658948589 515 False 202.0 202 74.9540 379 897 1 chr1B.!!$F4 518
30 TraesCS5B01G110200 chrUn 78591173 78591787 614 True 761.0 761 89.0320 1575 2192 1 chrUn.!!$R1 617
31 TraesCS5B01G110200 chr2B 139614465 139615080 615 False 713.0 713 87.6010 1574 2191 1 chr2B.!!$F1 617
32 TraesCS5B01G110200 chr4A 673409033 673409650 617 False 490.0 490 81.3500 302 909 1 chr4A.!!$F1 607
33 TraesCS5B01G110200 chr4A 677817895 677818420 525 False 255.0 255 76.3440 358 900 1 chr4A.!!$F2 542
34 TraesCS5B01G110200 chr3B 677170904 677171644 740 True 390.0 390 77.4870 1574 2287 1 chr3B.!!$R1 713
35 TraesCS5B01G110200 chr4D 432417919 432418482 563 False 344.0 344 78.2380 356 919 1 chr4D.!!$F1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.030638 GACCAGCATGCGTTTTGTGT 59.969 50.0 13.01 5.39 31.97 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1915 0.040067 CCGGTTACCCTACGTATCGC 60.04 60.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.751166 ACTGGACGACTCCTTTGATG 57.249 50.000 0.00 0.00 37.48 3.07
21 22 2.248248 ACTGGACGACTCCTTTGATGA 58.752 47.619 0.00 0.00 37.48 2.92
22 23 2.232452 ACTGGACGACTCCTTTGATGAG 59.768 50.000 0.00 0.00 37.48 2.90
23 24 2.493675 CTGGACGACTCCTTTGATGAGA 59.506 50.000 0.00 0.00 37.48 3.27
24 25 2.231478 TGGACGACTCCTTTGATGAGAC 59.769 50.000 0.00 0.00 37.48 3.36
25 26 2.417515 GGACGACTCCTTTGATGAGACC 60.418 54.545 0.00 0.00 33.07 3.85
26 27 2.231478 GACGACTCCTTTGATGAGACCA 59.769 50.000 0.00 0.00 33.95 4.02
27 28 2.232452 ACGACTCCTTTGATGAGACCAG 59.768 50.000 0.00 0.00 33.95 4.00
28 29 2.626840 GACTCCTTTGATGAGACCAGC 58.373 52.381 0.00 0.00 33.95 4.85
29 30 1.980765 ACTCCTTTGATGAGACCAGCA 59.019 47.619 0.00 0.00 36.84 4.41
30 31 2.575279 ACTCCTTTGATGAGACCAGCAT 59.425 45.455 0.00 0.00 38.62 3.79
31 32 2.943690 CTCCTTTGATGAGACCAGCATG 59.056 50.000 0.00 0.00 38.62 4.06
32 33 1.404391 CCTTTGATGAGACCAGCATGC 59.596 52.381 10.51 10.51 38.62 4.06
33 34 1.063616 CTTTGATGAGACCAGCATGCG 59.936 52.381 13.01 7.31 38.62 4.73
34 35 0.036105 TTGATGAGACCAGCATGCGT 60.036 50.000 13.01 4.77 38.62 5.24
35 36 0.036105 TGATGAGACCAGCATGCGTT 60.036 50.000 13.01 0.00 33.19 4.84
36 37 1.089920 GATGAGACCAGCATGCGTTT 58.910 50.000 13.01 0.00 31.97 3.60
37 38 1.470098 GATGAGACCAGCATGCGTTTT 59.530 47.619 13.01 0.00 31.97 2.43
38 39 0.592637 TGAGACCAGCATGCGTTTTG 59.407 50.000 13.01 4.74 31.97 2.44
39 40 0.593128 GAGACCAGCATGCGTTTTGT 59.407 50.000 13.01 6.19 31.97 2.83
40 41 0.311790 AGACCAGCATGCGTTTTGTG 59.688 50.000 13.01 3.52 31.97 3.33
41 42 0.030638 GACCAGCATGCGTTTTGTGT 59.969 50.000 13.01 5.39 31.97 3.72
42 43 1.265635 GACCAGCATGCGTTTTGTGTA 59.734 47.619 13.01 0.00 31.97 2.90
43 44 1.266718 ACCAGCATGCGTTTTGTGTAG 59.733 47.619 13.01 0.00 31.97 2.74
44 45 1.330306 CAGCATGCGTTTTGTGTAGC 58.670 50.000 13.01 0.00 0.00 3.58
45 46 0.110238 AGCATGCGTTTTGTGTAGCG 60.110 50.000 13.01 0.00 0.00 4.26
46 47 0.110419 GCATGCGTTTTGTGTAGCGA 60.110 50.000 0.00 0.00 0.00 4.93
47 48 1.661743 GCATGCGTTTTGTGTAGCGAA 60.662 47.619 0.00 0.00 0.00 4.70
48 49 2.850321 CATGCGTTTTGTGTAGCGAAT 58.150 42.857 0.00 0.00 0.00 3.34
49 50 2.587612 TGCGTTTTGTGTAGCGAATC 57.412 45.000 0.00 0.00 0.00 2.52
50 51 1.195900 TGCGTTTTGTGTAGCGAATCC 59.804 47.619 0.00 0.00 0.00 3.01
51 52 1.195900 GCGTTTTGTGTAGCGAATCCA 59.804 47.619 0.00 0.00 0.00 3.41
52 53 2.350007 GCGTTTTGTGTAGCGAATCCAA 60.350 45.455 0.00 0.00 0.00 3.53
53 54 3.479006 CGTTTTGTGTAGCGAATCCAAG 58.521 45.455 0.00 0.00 0.00 3.61
54 55 3.185594 CGTTTTGTGTAGCGAATCCAAGA 59.814 43.478 0.00 0.00 0.00 3.02
55 56 4.666655 CGTTTTGTGTAGCGAATCCAAGAG 60.667 45.833 0.00 0.00 0.00 2.85
56 57 3.678056 TTGTGTAGCGAATCCAAGAGT 57.322 42.857 0.00 0.00 0.00 3.24
57 58 3.232213 TGTGTAGCGAATCCAAGAGTC 57.768 47.619 0.00 0.00 0.00 3.36
58 59 2.826128 TGTGTAGCGAATCCAAGAGTCT 59.174 45.455 0.00 0.00 0.00 3.24
59 60 3.182967 GTGTAGCGAATCCAAGAGTCTG 58.817 50.000 0.00 0.00 0.00 3.51
60 61 3.089284 TGTAGCGAATCCAAGAGTCTGA 58.911 45.455 0.00 0.00 0.00 3.27
61 62 2.957491 AGCGAATCCAAGAGTCTGAG 57.043 50.000 0.00 0.00 0.00 3.35
62 63 1.480137 AGCGAATCCAAGAGTCTGAGG 59.520 52.381 0.00 0.00 0.00 3.86
63 64 1.205893 GCGAATCCAAGAGTCTGAGGT 59.794 52.381 10.73 0.00 0.00 3.85
64 65 2.737039 GCGAATCCAAGAGTCTGAGGTC 60.737 54.545 10.73 3.19 0.00 3.85
65 66 2.493675 CGAATCCAAGAGTCTGAGGTCA 59.506 50.000 10.73 0.00 0.00 4.02
66 67 3.056536 CGAATCCAAGAGTCTGAGGTCAA 60.057 47.826 10.73 0.00 0.00 3.18
67 68 4.502962 GAATCCAAGAGTCTGAGGTCAAG 58.497 47.826 10.73 0.00 0.00 3.02
68 69 2.251818 TCCAAGAGTCTGAGGTCAAGG 58.748 52.381 10.73 0.00 0.00 3.61
69 70 2.158310 TCCAAGAGTCTGAGGTCAAGGA 60.158 50.000 10.73 0.00 0.00 3.36
70 71 2.233431 CCAAGAGTCTGAGGTCAAGGAG 59.767 54.545 0.00 0.00 0.00 3.69
71 72 2.230130 AGAGTCTGAGGTCAAGGAGG 57.770 55.000 0.00 0.00 0.00 4.30
72 73 0.534873 GAGTCTGAGGTCAAGGAGGC 59.465 60.000 0.00 0.00 0.00 4.70
73 74 0.178921 AGTCTGAGGTCAAGGAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
74 75 0.687354 GTCTGAGGTCAAGGAGGCAA 59.313 55.000 0.00 0.00 0.00 4.52
75 76 0.979665 TCTGAGGTCAAGGAGGCAAG 59.020 55.000 0.00 0.00 0.00 4.01
76 77 0.035630 CTGAGGTCAAGGAGGCAAGG 60.036 60.000 0.00 0.00 0.00 3.61
77 78 1.377856 GAGGTCAAGGAGGCAAGGC 60.378 63.158 0.00 0.00 0.00 4.35
78 79 2.747855 GGTCAAGGAGGCAAGGCG 60.748 66.667 0.00 0.00 0.00 5.52
79 80 2.347490 GTCAAGGAGGCAAGGCGA 59.653 61.111 0.00 0.00 0.00 5.54
80 81 1.078143 GTCAAGGAGGCAAGGCGAT 60.078 57.895 0.00 0.00 0.00 4.58
81 82 0.178068 GTCAAGGAGGCAAGGCGATA 59.822 55.000 0.00 0.00 0.00 2.92
82 83 0.465705 TCAAGGAGGCAAGGCGATAG 59.534 55.000 0.00 0.00 0.00 2.08
83 84 0.533755 CAAGGAGGCAAGGCGATAGG 60.534 60.000 0.00 0.00 0.00 2.57
95 96 2.770164 GCGATAGGCCCTGATTGTAT 57.230 50.000 0.00 0.00 34.80 2.29
96 97 2.622436 GCGATAGGCCCTGATTGTATC 58.378 52.381 0.00 0.00 34.80 2.24
97 98 2.678190 GCGATAGGCCCTGATTGTATCC 60.678 54.545 0.00 0.00 34.80 2.59
98 99 2.093447 CGATAGGCCCTGATTGTATCCC 60.093 54.545 0.00 0.00 0.00 3.85
99 100 1.742308 TAGGCCCTGATTGTATCCCC 58.258 55.000 0.00 0.00 0.00 4.81
100 101 0.328450 AGGCCCTGATTGTATCCCCA 60.328 55.000 0.00 0.00 0.00 4.96
101 102 0.779997 GGCCCTGATTGTATCCCCAT 59.220 55.000 0.00 0.00 0.00 4.00
102 103 1.147817 GGCCCTGATTGTATCCCCATT 59.852 52.381 0.00 0.00 0.00 3.16
103 104 2.242043 GCCCTGATTGTATCCCCATTG 58.758 52.381 0.00 0.00 0.00 2.82
104 105 2.158475 GCCCTGATTGTATCCCCATTGA 60.158 50.000 0.00 0.00 0.00 2.57
105 106 3.759581 CCCTGATTGTATCCCCATTGAG 58.240 50.000 0.00 0.00 0.00 3.02
106 107 3.499202 CCCTGATTGTATCCCCATTGAGG 60.499 52.174 0.00 0.00 37.03 3.86
107 108 3.139025 CCTGATTGTATCCCCATTGAGGT 59.861 47.826 0.00 0.00 34.66 3.85
108 109 4.139786 CTGATTGTATCCCCATTGAGGTG 58.860 47.826 0.00 0.00 34.66 4.00
109 110 3.527253 TGATTGTATCCCCATTGAGGTGT 59.473 43.478 0.00 0.00 34.66 4.16
110 111 3.364460 TTGTATCCCCATTGAGGTGTG 57.636 47.619 0.00 0.00 34.66 3.82
111 112 1.563879 TGTATCCCCATTGAGGTGTGG 59.436 52.381 0.00 0.00 34.66 4.17
112 113 1.843851 GTATCCCCATTGAGGTGTGGA 59.156 52.381 0.00 0.00 37.72 4.02
113 114 1.381867 ATCCCCATTGAGGTGTGGAA 58.618 50.000 0.00 0.00 37.72 3.53
114 115 1.153539 TCCCCATTGAGGTGTGGAAA 58.846 50.000 0.00 0.00 37.72 3.13
115 116 1.075374 TCCCCATTGAGGTGTGGAAAG 59.925 52.381 0.00 0.00 37.72 2.62
116 117 1.549203 CCCATTGAGGTGTGGAAAGG 58.451 55.000 0.00 0.00 37.72 3.11
117 118 0.890683 CCATTGAGGTGTGGAAAGGC 59.109 55.000 0.00 0.00 37.72 4.35
118 119 0.890683 CATTGAGGTGTGGAAAGGCC 59.109 55.000 0.00 0.00 37.10 5.19
119 120 0.779997 ATTGAGGTGTGGAAAGGCCT 59.220 50.000 0.00 0.00 37.63 5.19
120 121 0.110486 TTGAGGTGTGGAAAGGCCTC 59.890 55.000 5.23 0.00 45.64 4.70
121 122 0.768221 TGAGGTGTGGAAAGGCCTCT 60.768 55.000 5.23 0.00 45.64 3.69
122 123 0.322008 GAGGTGTGGAAAGGCCTCTG 60.322 60.000 5.23 0.00 42.99 3.35
123 124 1.303643 GGTGTGGAAAGGCCTCTGG 60.304 63.158 5.23 0.00 37.63 3.86
124 125 1.303643 GTGTGGAAAGGCCTCTGGG 60.304 63.158 5.23 0.00 37.63 4.45
125 126 1.463214 TGTGGAAAGGCCTCTGGGA 60.463 57.895 5.23 0.00 37.63 4.37
126 127 1.002011 GTGGAAAGGCCTCTGGGAC 60.002 63.158 5.23 0.00 42.21 4.46
127 128 1.463214 TGGAAAGGCCTCTGGGACA 60.463 57.895 5.23 0.00 45.05 4.02
128 129 1.065410 TGGAAAGGCCTCTGGGACAA 61.065 55.000 5.23 0.00 45.05 3.18
129 130 0.609406 GGAAAGGCCTCTGGGACAAC 60.609 60.000 5.23 0.00 45.05 3.32
130 131 0.955919 GAAAGGCCTCTGGGACAACG 60.956 60.000 5.23 0.00 45.05 4.10
131 132 1.415672 AAAGGCCTCTGGGACAACGA 61.416 55.000 5.23 0.00 45.05 3.85
132 133 1.201429 AAGGCCTCTGGGACAACGAT 61.201 55.000 5.23 0.00 45.05 3.73
133 134 0.325296 AGGCCTCTGGGACAACGATA 60.325 55.000 0.00 0.00 45.05 2.92
134 135 0.105039 GGCCTCTGGGACAACGATAG 59.895 60.000 0.00 0.00 41.30 2.08
135 136 0.824759 GCCTCTGGGACAACGATAGT 59.175 55.000 0.00 0.00 44.44 2.12
136 137 2.029623 GCCTCTGGGACAACGATAGTA 58.970 52.381 0.00 0.00 42.23 1.82
137 138 2.628657 GCCTCTGGGACAACGATAGTAT 59.371 50.000 0.00 0.00 42.23 2.12
138 139 3.553096 GCCTCTGGGACAACGATAGTATG 60.553 52.174 0.00 0.00 42.23 2.39
139 140 3.005897 CCTCTGGGACAACGATAGTATGG 59.994 52.174 0.00 0.00 42.23 2.74
140 141 6.588243 CCTCTGGGACAACGATAGTATGGC 62.588 54.167 0.00 0.00 42.23 4.40
165 166 8.424274 CTAACCAAGCTTTTCAACTTCATTTT 57.576 30.769 0.00 0.00 0.00 1.82
166 167 7.686438 AACCAAGCTTTTCAACTTCATTTTT 57.314 28.000 0.00 0.00 0.00 1.94
167 168 7.307493 ACCAAGCTTTTCAACTTCATTTTTC 57.693 32.000 0.00 0.00 0.00 2.29
168 169 6.035975 ACCAAGCTTTTCAACTTCATTTTTCG 59.964 34.615 0.00 0.00 0.00 3.46
169 170 6.413269 CAAGCTTTTCAACTTCATTTTTCGG 58.587 36.000 0.00 0.00 0.00 4.30
170 171 5.049828 AGCTTTTCAACTTCATTTTTCGGG 58.950 37.500 0.00 0.00 0.00 5.14
171 172 4.318760 GCTTTTCAACTTCATTTTTCGGGC 60.319 41.667 0.00 0.00 0.00 6.13
172 173 4.392921 TTTCAACTTCATTTTTCGGGCA 57.607 36.364 0.00 0.00 0.00 5.36
173 174 4.392921 TTCAACTTCATTTTTCGGGCAA 57.607 36.364 0.00 0.00 0.00 4.52
174 175 4.392921 TCAACTTCATTTTTCGGGCAAA 57.607 36.364 0.00 0.00 0.00 3.68
175 176 4.116238 TCAACTTCATTTTTCGGGCAAAC 58.884 39.130 0.00 0.00 0.00 2.93
176 177 3.810310 ACTTCATTTTTCGGGCAAACA 57.190 38.095 0.00 0.00 0.00 2.83
177 178 4.130286 ACTTCATTTTTCGGGCAAACAA 57.870 36.364 0.00 0.00 0.00 2.83
178 179 4.119136 ACTTCATTTTTCGGGCAAACAAG 58.881 39.130 0.00 0.00 0.00 3.16
179 180 4.142049 ACTTCATTTTTCGGGCAAACAAGA 60.142 37.500 0.00 0.00 0.00 3.02
180 181 4.599047 TCATTTTTCGGGCAAACAAGAT 57.401 36.364 0.00 0.00 0.00 2.40
181 182 4.305769 TCATTTTTCGGGCAAACAAGATG 58.694 39.130 0.00 0.00 0.00 2.90
182 183 2.147436 TTTTCGGGCAAACAAGATGC 57.853 45.000 0.00 0.00 43.08 3.91
190 191 3.648339 GCAAACAAGATGCCAGAAGAA 57.352 42.857 0.00 0.00 37.85 2.52
191 192 4.184079 GCAAACAAGATGCCAGAAGAAT 57.816 40.909 0.00 0.00 37.85 2.40
192 193 3.924686 GCAAACAAGATGCCAGAAGAATG 59.075 43.478 0.00 0.00 37.85 2.67
193 194 4.321452 GCAAACAAGATGCCAGAAGAATGA 60.321 41.667 0.00 0.00 37.85 2.57
194 195 5.399858 CAAACAAGATGCCAGAAGAATGAG 58.600 41.667 0.00 0.00 0.00 2.90
195 196 4.564782 ACAAGATGCCAGAAGAATGAGA 57.435 40.909 0.00 0.00 0.00 3.27
196 197 4.515361 ACAAGATGCCAGAAGAATGAGAG 58.485 43.478 0.00 0.00 0.00 3.20
197 198 4.019501 ACAAGATGCCAGAAGAATGAGAGT 60.020 41.667 0.00 0.00 0.00 3.24
198 199 5.188555 ACAAGATGCCAGAAGAATGAGAGTA 59.811 40.000 0.00 0.00 0.00 2.59
199 200 6.126825 ACAAGATGCCAGAAGAATGAGAGTAT 60.127 38.462 0.00 0.00 0.00 2.12
200 201 7.070447 ACAAGATGCCAGAAGAATGAGAGTATA 59.930 37.037 0.00 0.00 0.00 1.47
201 202 7.795534 AGATGCCAGAAGAATGAGAGTATAT 57.204 36.000 0.00 0.00 0.00 0.86
202 203 8.204903 AGATGCCAGAAGAATGAGAGTATATT 57.795 34.615 0.00 0.00 0.00 1.28
203 204 9.319060 AGATGCCAGAAGAATGAGAGTATATTA 57.681 33.333 0.00 0.00 0.00 0.98
204 205 9.585099 GATGCCAGAAGAATGAGAGTATATTAG 57.415 37.037 0.00 0.00 0.00 1.73
205 206 8.484214 TGCCAGAAGAATGAGAGTATATTAGT 57.516 34.615 0.00 0.00 0.00 2.24
206 207 9.588096 TGCCAGAAGAATGAGAGTATATTAGTA 57.412 33.333 0.00 0.00 0.00 1.82
207 208 9.849166 GCCAGAAGAATGAGAGTATATTAGTAC 57.151 37.037 0.00 0.00 0.00 2.73
225 226 7.979444 TTAGTACCAATCTTCAAGAACAAGG 57.021 36.000 0.00 0.00 0.00 3.61
226 227 5.316987 AGTACCAATCTTCAAGAACAAGGG 58.683 41.667 0.00 0.00 0.00 3.95
227 228 3.500343 ACCAATCTTCAAGAACAAGGGG 58.500 45.455 0.00 0.00 0.00 4.79
228 229 2.827921 CCAATCTTCAAGAACAAGGGGG 59.172 50.000 0.00 0.00 0.00 5.40
229 230 3.500289 CCAATCTTCAAGAACAAGGGGGA 60.500 47.826 0.00 0.00 0.00 4.81
230 231 4.347607 CAATCTTCAAGAACAAGGGGGAT 58.652 43.478 0.00 0.00 0.00 3.85
231 232 3.439857 TCTTCAAGAACAAGGGGGATG 57.560 47.619 0.00 0.00 0.00 3.51
232 233 2.716424 TCTTCAAGAACAAGGGGGATGT 59.284 45.455 0.00 0.00 0.00 3.06
233 234 3.140144 TCTTCAAGAACAAGGGGGATGTT 59.860 43.478 0.00 0.00 43.37 2.71
238 239 2.887151 AACAAGGGGGATGTTCAGAG 57.113 50.000 0.00 0.00 36.28 3.35
239 240 1.747444 ACAAGGGGGATGTTCAGAGT 58.253 50.000 0.00 0.00 0.00 3.24
240 241 2.065799 ACAAGGGGGATGTTCAGAGTT 58.934 47.619 0.00 0.00 0.00 3.01
241 242 2.224867 ACAAGGGGGATGTTCAGAGTTG 60.225 50.000 0.00 0.00 0.00 3.16
242 243 1.747444 AGGGGGATGTTCAGAGTTGT 58.253 50.000 0.00 0.00 0.00 3.32
243 244 2.915869 AGGGGGATGTTCAGAGTTGTA 58.084 47.619 0.00 0.00 0.00 2.41
244 245 2.572104 AGGGGGATGTTCAGAGTTGTAC 59.428 50.000 0.00 0.00 0.00 2.90
245 246 2.572104 GGGGGATGTTCAGAGTTGTACT 59.428 50.000 0.00 0.00 0.00 2.73
246 247 3.773119 GGGGGATGTTCAGAGTTGTACTA 59.227 47.826 0.00 0.00 0.00 1.82
247 248 4.224370 GGGGGATGTTCAGAGTTGTACTAA 59.776 45.833 0.00 0.00 0.00 2.24
248 249 5.104485 GGGGGATGTTCAGAGTTGTACTAAT 60.104 44.000 0.00 0.00 0.00 1.73
249 250 6.415573 GGGGATGTTCAGAGTTGTACTAATT 58.584 40.000 0.00 0.00 0.00 1.40
250 251 7.365295 GGGGGATGTTCAGAGTTGTACTAATTA 60.365 40.741 0.00 0.00 0.00 1.40
251 252 8.211629 GGGGATGTTCAGAGTTGTACTAATTAT 58.788 37.037 0.00 0.00 0.00 1.28
252 253 9.262358 GGGATGTTCAGAGTTGTACTAATTATC 57.738 37.037 0.00 0.00 0.00 1.75
253 254 8.969267 GGATGTTCAGAGTTGTACTAATTATCG 58.031 37.037 0.00 0.00 0.00 2.92
254 255 9.517609 GATGTTCAGAGTTGTACTAATTATCGT 57.482 33.333 0.00 0.00 0.00 3.73
255 256 8.683550 TGTTCAGAGTTGTACTAATTATCGTG 57.316 34.615 0.00 0.00 0.00 4.35
256 257 7.758076 TGTTCAGAGTTGTACTAATTATCGTGG 59.242 37.037 0.00 0.00 0.00 4.94
257 258 7.634671 TCAGAGTTGTACTAATTATCGTGGA 57.365 36.000 0.00 0.00 0.00 4.02
258 259 8.058667 TCAGAGTTGTACTAATTATCGTGGAA 57.941 34.615 0.00 0.00 0.00 3.53
259 260 8.692710 TCAGAGTTGTACTAATTATCGTGGAAT 58.307 33.333 0.00 0.00 0.00 3.01
260 261 9.314321 CAGAGTTGTACTAATTATCGTGGAATT 57.686 33.333 0.00 0.00 0.00 2.17
264 265 9.859692 GTTGTACTAATTATCGTGGAATTAAGC 57.140 33.333 0.00 0.00 30.40 3.09
265 266 9.826574 TTGTACTAATTATCGTGGAATTAAGCT 57.173 29.630 0.00 0.00 30.40 3.74
266 267 9.256477 TGTACTAATTATCGTGGAATTAAGCTG 57.744 33.333 0.00 0.00 30.40 4.24
267 268 9.472361 GTACTAATTATCGTGGAATTAAGCTGA 57.528 33.333 0.00 0.00 30.40 4.26
269 270 8.993121 ACTAATTATCGTGGAATTAAGCTGATG 58.007 33.333 0.00 0.00 30.40 3.07
270 271 9.208022 CTAATTATCGTGGAATTAAGCTGATGA 57.792 33.333 0.00 0.00 30.40 2.92
271 272 7.664082 ATTATCGTGGAATTAAGCTGATGAG 57.336 36.000 0.00 0.00 0.00 2.90
272 273 3.198068 TCGTGGAATTAAGCTGATGAGC 58.802 45.455 0.00 0.00 46.64 4.26
285 286 5.232610 GCTGATGAGCCATATAATGAAGC 57.767 43.478 0.00 0.00 39.57 3.86
286 287 4.942483 GCTGATGAGCCATATAATGAAGCT 59.058 41.667 0.00 0.00 39.57 3.74
287 288 6.111382 GCTGATGAGCCATATAATGAAGCTA 58.889 40.000 0.00 0.00 39.57 3.32
288 289 6.766944 GCTGATGAGCCATATAATGAAGCTAT 59.233 38.462 0.00 0.00 39.57 2.97
289 290 7.254829 GCTGATGAGCCATATAATGAAGCTATG 60.255 40.741 0.00 0.00 39.57 2.23
290 291 7.052248 TGATGAGCCATATAATGAAGCTATGG 58.948 38.462 5.23 5.23 43.13 2.74
291 292 5.748402 TGAGCCATATAATGAAGCTATGGG 58.252 41.667 10.66 0.00 41.40 4.00
292 293 5.488561 TGAGCCATATAATGAAGCTATGGGA 59.511 40.000 10.66 0.00 41.40 4.37
293 294 5.999044 AGCCATATAATGAAGCTATGGGAG 58.001 41.667 10.66 0.00 41.40 4.30
294 295 5.728253 AGCCATATAATGAAGCTATGGGAGA 59.272 40.000 10.66 0.00 41.40 3.71
295 296 6.054295 GCCATATAATGAAGCTATGGGAGAG 58.946 44.000 10.66 0.00 41.40 3.20
296 297 6.352565 GCCATATAATGAAGCTATGGGAGAGT 60.353 42.308 10.66 0.00 41.40 3.24
297 298 7.271511 CCATATAATGAAGCTATGGGAGAGTC 58.728 42.308 2.00 0.00 38.71 3.36
298 299 7.093156 CCATATAATGAAGCTATGGGAGAGTCA 60.093 40.741 2.00 0.00 38.71 3.41
299 300 6.949117 ATAATGAAGCTATGGGAGAGTCAT 57.051 37.500 0.00 0.00 33.72 3.06
300 301 4.620589 ATGAAGCTATGGGAGAGTCATG 57.379 45.455 0.00 0.00 32.05 3.07
338 339 1.213094 GCACGATATTAGCACCGCGT 61.213 55.000 4.92 0.00 0.00 6.01
384 386 3.700970 TGCATCCGTTCTGGGCGA 61.701 61.111 0.00 0.00 38.76 5.54
529 537 1.075970 ACTGCCGCCATCCTCTCTA 60.076 57.895 0.00 0.00 0.00 2.43
531 539 1.814772 CTGCCGCCATCCTCTCTAGG 61.815 65.000 0.00 0.00 45.21 3.02
533 541 1.532794 CCGCCATCCTCTCTAGGCT 60.533 63.158 0.00 0.00 44.85 4.58
624 633 1.151899 ACCCCTTCCTACACCTGCA 60.152 57.895 0.00 0.00 0.00 4.41
640 661 4.636435 CAACCCCTCCGCCGTTGT 62.636 66.667 0.00 0.00 33.72 3.32
711 747 2.583441 CCTCCAAGCACCGGTCTCA 61.583 63.158 2.59 0.00 0.00 3.27
743 779 2.281484 ATGGCGCCACGAACAACT 60.281 55.556 35.50 10.89 0.00 3.16
754 790 3.249973 GAACAACTTCGGCACCGGC 62.250 63.158 9.58 0.00 40.25 6.13
809 865 2.600173 CCCAAATGTGGCGGTGGT 60.600 61.111 0.00 0.00 44.46 4.16
847 903 0.320421 CGGGAAGAAGAACAAGGCGA 60.320 55.000 0.00 0.00 0.00 5.54
958 1057 3.979911 TGCCCACAAGGTATGATTTCAT 58.020 40.909 0.00 0.00 38.26 2.57
960 1059 4.210331 GCCCACAAGGTATGATTTCATCT 58.790 43.478 0.00 0.00 38.26 2.90
962 1061 5.239525 GCCCACAAGGTATGATTTCATCTAC 59.760 44.000 0.00 0.00 38.26 2.59
1077 1184 8.224025 ACATATATGTCAATTATGGGTGTTGGA 58.776 33.333 12.75 0.00 35.87 3.53
1171 1280 0.660595 GAGGGTATCGTCGATGCACG 60.661 60.000 22.27 0.00 41.36 5.34
1194 1303 0.905337 AGGAAGAGCGGGCAACTACT 60.905 55.000 0.00 0.00 0.00 2.57
1202 1311 0.469917 CGGGCAACTACTCCATGGAT 59.530 55.000 16.63 8.36 0.00 3.41
1255 1364 1.001120 TGTCTAGGGATGCCACCGA 59.999 57.895 5.86 0.00 0.00 4.69
1256 1365 1.327690 TGTCTAGGGATGCCACCGAC 61.328 60.000 5.86 9.17 0.00 4.79
1285 1394 9.284131 AGGGGATCAAAGTAGATATGCATATTA 57.716 33.333 20.00 11.38 0.00 0.98
1334 1443 9.260002 GATTTACACAACAAAAGTGGAATTGAT 57.740 29.630 0.00 0.00 39.41 2.57
1358 1467 3.506810 CACGAAAAGATCTCTTCGCTCT 58.493 45.455 26.87 8.77 46.46 4.09
1392 1501 6.219302 CAATCAACAAAGATTGTCAAAGGC 57.781 37.500 8.17 0.00 46.12 4.35
1418 1530 3.354678 GCACTTGGCGGTTGACAT 58.645 55.556 0.00 0.00 28.93 3.06
1420 1532 1.081242 CACTTGGCGGTTGACATGC 60.081 57.895 0.00 0.00 31.52 4.06
1425 1537 1.164411 TGGCGGTTGACATGCTAAAG 58.836 50.000 0.00 0.00 0.00 1.85
1478 1598 5.988310 AGTGCCATTTCTTTCATGATTCA 57.012 34.783 0.00 0.00 0.00 2.57
1561 1685 8.143835 AGCTCACTATTGCACAAAACTTATTTT 58.856 29.630 0.00 0.00 38.61 1.82
1624 1748 4.202441 CGATCTTTCATGTTTGGAGGGAT 58.798 43.478 0.00 0.00 0.00 3.85
1666 1804 0.473117 ACGAGAGGGGAAACAAGGGA 60.473 55.000 0.00 0.00 0.00 4.20
1692 1831 4.095782 CACGAGGGAAACACAAGAGAAAAA 59.904 41.667 0.00 0.00 0.00 1.94
1773 1915 4.768968 ACAAGATCTGAATCCAACAAAGGG 59.231 41.667 0.00 0.00 31.78 3.95
1780 1923 1.663695 ATCCAACAAAGGGCGATACG 58.336 50.000 0.00 0.00 0.00 3.06
1961 2112 5.957771 TCACATTGCTAACCCTAGAAGAT 57.042 39.130 0.00 0.00 0.00 2.40
1999 2157 9.744125 TCATATATATAGGCTAAGGGGACAAAT 57.256 33.333 0.00 0.00 0.00 2.32
2086 2252 0.965439 ATGATCTAGGCTCTGTCCGC 59.035 55.000 0.00 0.00 0.00 5.54
2133 2299 2.282391 AAGATGCAAGCGGTGGCA 60.282 55.556 20.61 20.61 45.23 4.92
2204 2405 0.620556 ATGATCCAGCTTCGGGTGTT 59.379 50.000 0.00 0.00 41.39 3.32
2205 2406 0.321564 TGATCCAGCTTCGGGTGTTG 60.322 55.000 0.00 0.00 41.39 3.33
2209 2411 0.817634 CCAGCTTCGGGTGTTGTTGA 60.818 55.000 0.00 0.00 41.39 3.18
2269 2471 1.826921 GGGCTCTGTCCGGATCGTA 60.827 63.158 7.81 0.00 0.00 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.231478 GTCTCATCAAAGGAGTCGTCCA 59.769 50.000 0.00 0.00 46.80 4.02
4 5 2.417515 GGTCTCATCAAAGGAGTCGTCC 60.418 54.545 0.00 0.00 44.33 4.79
5 6 2.231478 TGGTCTCATCAAAGGAGTCGTC 59.769 50.000 0.00 0.00 34.04 4.20
7 8 2.886081 CTGGTCTCATCAAAGGAGTCG 58.114 52.381 0.00 0.00 34.04 4.18
8 9 2.027745 TGCTGGTCTCATCAAAGGAGTC 60.028 50.000 0.00 0.00 34.04 3.36
9 10 1.980765 TGCTGGTCTCATCAAAGGAGT 59.019 47.619 0.00 0.00 34.04 3.85
10 11 2.775911 TGCTGGTCTCATCAAAGGAG 57.224 50.000 0.00 0.00 0.00 3.69
11 12 2.942752 GCATGCTGGTCTCATCAAAGGA 60.943 50.000 11.37 0.00 0.00 3.36
12 13 1.404391 GCATGCTGGTCTCATCAAAGG 59.596 52.381 11.37 0.00 0.00 3.11
13 14 1.063616 CGCATGCTGGTCTCATCAAAG 59.936 52.381 17.13 0.00 0.00 2.77
14 15 1.089112 CGCATGCTGGTCTCATCAAA 58.911 50.000 17.13 0.00 0.00 2.69
15 16 0.036105 ACGCATGCTGGTCTCATCAA 60.036 50.000 17.13 0.00 0.00 2.57
16 17 0.036105 AACGCATGCTGGTCTCATCA 60.036 50.000 17.13 0.00 0.00 3.07
17 18 1.089920 AAACGCATGCTGGTCTCATC 58.910 50.000 17.13 0.00 0.00 2.92
18 19 1.200716 CAAAACGCATGCTGGTCTCAT 59.799 47.619 17.13 0.00 0.00 2.90
19 20 0.592637 CAAAACGCATGCTGGTCTCA 59.407 50.000 17.13 0.00 0.00 3.27
20 21 0.593128 ACAAAACGCATGCTGGTCTC 59.407 50.000 17.13 0.00 0.00 3.36
21 22 0.311790 CACAAAACGCATGCTGGTCT 59.688 50.000 17.13 0.00 0.00 3.85
22 23 0.030638 ACACAAAACGCATGCTGGTC 59.969 50.000 17.13 0.00 0.00 4.02
23 24 1.266718 CTACACAAAACGCATGCTGGT 59.733 47.619 17.13 4.01 0.00 4.00
24 25 1.967762 CTACACAAAACGCATGCTGG 58.032 50.000 17.13 3.27 0.00 4.85
25 26 1.330306 GCTACACAAAACGCATGCTG 58.670 50.000 17.13 9.68 0.00 4.41
26 27 0.110238 CGCTACACAAAACGCATGCT 60.110 50.000 17.13 0.00 0.00 3.79
27 28 0.110419 TCGCTACACAAAACGCATGC 60.110 50.000 7.91 7.91 0.00 4.06
28 29 2.308347 TTCGCTACACAAAACGCATG 57.692 45.000 0.00 0.00 0.00 4.06
29 30 2.159572 GGATTCGCTACACAAAACGCAT 60.160 45.455 0.00 0.00 0.00 4.73
30 31 1.195900 GGATTCGCTACACAAAACGCA 59.804 47.619 0.00 0.00 0.00 5.24
31 32 1.195900 TGGATTCGCTACACAAAACGC 59.804 47.619 0.00 0.00 0.00 4.84
32 33 3.185594 TCTTGGATTCGCTACACAAAACG 59.814 43.478 0.00 0.00 0.00 3.60
33 34 4.213482 ACTCTTGGATTCGCTACACAAAAC 59.787 41.667 0.00 0.00 0.00 2.43
34 35 4.385825 ACTCTTGGATTCGCTACACAAAA 58.614 39.130 0.00 0.00 0.00 2.44
35 36 3.994392 GACTCTTGGATTCGCTACACAAA 59.006 43.478 0.00 0.00 0.00 2.83
36 37 3.258372 AGACTCTTGGATTCGCTACACAA 59.742 43.478 0.00 0.00 0.00 3.33
37 38 2.826128 AGACTCTTGGATTCGCTACACA 59.174 45.455 0.00 0.00 0.00 3.72
38 39 3.119459 TCAGACTCTTGGATTCGCTACAC 60.119 47.826 0.00 0.00 0.00 2.90
39 40 3.089284 TCAGACTCTTGGATTCGCTACA 58.911 45.455 0.00 0.00 0.00 2.74
40 41 3.490078 CCTCAGACTCTTGGATTCGCTAC 60.490 52.174 0.00 0.00 0.00 3.58
41 42 2.690497 CCTCAGACTCTTGGATTCGCTA 59.310 50.000 0.00 0.00 0.00 4.26
42 43 1.480137 CCTCAGACTCTTGGATTCGCT 59.520 52.381 0.00 0.00 0.00 4.93
43 44 1.205893 ACCTCAGACTCTTGGATTCGC 59.794 52.381 2.65 0.00 0.00 4.70
44 45 2.493675 TGACCTCAGACTCTTGGATTCG 59.506 50.000 2.65 0.00 0.00 3.34
45 46 4.502962 CTTGACCTCAGACTCTTGGATTC 58.497 47.826 2.65 0.00 0.00 2.52
46 47 3.262915 CCTTGACCTCAGACTCTTGGATT 59.737 47.826 2.65 0.00 0.00 3.01
47 48 2.836981 CCTTGACCTCAGACTCTTGGAT 59.163 50.000 2.65 0.00 0.00 3.41
48 49 2.158310 TCCTTGACCTCAGACTCTTGGA 60.158 50.000 2.65 0.00 0.00 3.53
49 50 2.233431 CTCCTTGACCTCAGACTCTTGG 59.767 54.545 0.00 0.00 0.00 3.61
50 51 2.233431 CCTCCTTGACCTCAGACTCTTG 59.767 54.545 0.00 0.00 0.00 3.02
51 52 2.534990 CCTCCTTGACCTCAGACTCTT 58.465 52.381 0.00 0.00 0.00 2.85
52 53 1.894978 GCCTCCTTGACCTCAGACTCT 60.895 57.143 0.00 0.00 0.00 3.24
53 54 0.534873 GCCTCCTTGACCTCAGACTC 59.465 60.000 0.00 0.00 0.00 3.36
54 55 0.178921 TGCCTCCTTGACCTCAGACT 60.179 55.000 0.00 0.00 0.00 3.24
55 56 0.687354 TTGCCTCCTTGACCTCAGAC 59.313 55.000 0.00 0.00 0.00 3.51
56 57 0.979665 CTTGCCTCCTTGACCTCAGA 59.020 55.000 0.00 0.00 0.00 3.27
57 58 0.035630 CCTTGCCTCCTTGACCTCAG 60.036 60.000 0.00 0.00 0.00 3.35
58 59 2.069776 CCTTGCCTCCTTGACCTCA 58.930 57.895 0.00 0.00 0.00 3.86
59 60 1.377856 GCCTTGCCTCCTTGACCTC 60.378 63.158 0.00 0.00 0.00 3.85
60 61 2.759795 GCCTTGCCTCCTTGACCT 59.240 61.111 0.00 0.00 0.00 3.85
61 62 2.543067 ATCGCCTTGCCTCCTTGACC 62.543 60.000 0.00 0.00 0.00 4.02
62 63 0.178068 TATCGCCTTGCCTCCTTGAC 59.822 55.000 0.00 0.00 0.00 3.18
63 64 0.465705 CTATCGCCTTGCCTCCTTGA 59.534 55.000 0.00 0.00 0.00 3.02
64 65 0.533755 CCTATCGCCTTGCCTCCTTG 60.534 60.000 0.00 0.00 0.00 3.61
65 66 1.832912 CCTATCGCCTTGCCTCCTT 59.167 57.895 0.00 0.00 0.00 3.36
66 67 2.812619 GCCTATCGCCTTGCCTCCT 61.813 63.158 0.00 0.00 0.00 3.69
67 68 2.281139 GCCTATCGCCTTGCCTCC 60.281 66.667 0.00 0.00 0.00 4.30
76 77 2.622436 GATACAATCAGGGCCTATCGC 58.378 52.381 5.28 0.00 0.00 4.58
77 78 2.093447 GGGATACAATCAGGGCCTATCG 60.093 54.545 5.28 0.00 39.74 2.92
78 79 2.239907 GGGGATACAATCAGGGCCTATC 59.760 54.545 5.28 4.20 39.74 2.08
79 80 2.279173 GGGGATACAATCAGGGCCTAT 58.721 52.381 5.28 0.00 39.74 2.57
80 81 1.060954 TGGGGATACAATCAGGGCCTA 60.061 52.381 5.28 0.00 39.74 3.93
81 82 0.328450 TGGGGATACAATCAGGGCCT 60.328 55.000 0.00 0.00 39.74 5.19
82 83 0.779997 ATGGGGATACAATCAGGGCC 59.220 55.000 0.00 0.00 39.74 5.80
83 84 2.158475 TCAATGGGGATACAATCAGGGC 60.158 50.000 0.00 0.00 39.74 5.19
84 85 3.499202 CCTCAATGGGGATACAATCAGGG 60.499 52.174 0.00 0.00 39.74 4.45
85 86 3.139025 ACCTCAATGGGGATACAATCAGG 59.861 47.826 5.97 0.00 41.11 3.86
86 87 4.139786 CACCTCAATGGGGATACAATCAG 58.860 47.826 5.97 0.00 43.63 2.90
87 88 3.527253 ACACCTCAATGGGGATACAATCA 59.473 43.478 5.97 0.00 43.63 2.57
88 89 3.885297 CACACCTCAATGGGGATACAATC 59.115 47.826 5.97 0.00 43.63 2.67
89 90 3.902218 CACACCTCAATGGGGATACAAT 58.098 45.455 5.97 0.00 43.63 2.71
90 91 3.364460 CACACCTCAATGGGGATACAA 57.636 47.619 5.97 0.00 43.63 2.41
96 97 1.549203 CTTTCCACACCTCAATGGGG 58.451 55.000 0.00 0.00 45.45 4.96
97 98 1.549203 CCTTTCCACACCTCAATGGG 58.451 55.000 0.00 0.00 41.11 4.00
98 99 0.890683 GCCTTTCCACACCTCAATGG 59.109 55.000 0.00 0.00 42.93 3.16
99 100 0.890683 GGCCTTTCCACACCTCAATG 59.109 55.000 0.00 0.00 34.01 2.82
100 101 0.779997 AGGCCTTTCCACACCTCAAT 59.220 50.000 0.00 0.00 37.29 2.57
101 102 0.110486 GAGGCCTTTCCACACCTCAA 59.890 55.000 6.77 0.00 46.57 3.02
102 103 1.761174 GAGGCCTTTCCACACCTCA 59.239 57.895 6.77 0.00 46.57 3.86
103 104 4.724262 GAGGCCTTTCCACACCTC 57.276 61.111 6.77 0.00 41.81 3.85
104 105 1.763770 CAGAGGCCTTTCCACACCT 59.236 57.895 6.77 0.00 37.29 4.00
105 106 1.303643 CCAGAGGCCTTTCCACACC 60.304 63.158 6.77 0.00 37.29 4.16
106 107 1.303643 CCCAGAGGCCTTTCCACAC 60.304 63.158 6.77 0.00 37.29 3.82
107 108 1.463214 TCCCAGAGGCCTTTCCACA 60.463 57.895 6.77 0.00 37.29 4.17
108 109 1.002011 GTCCCAGAGGCCTTTCCAC 60.002 63.158 6.77 0.00 37.29 4.02
109 110 1.065410 TTGTCCCAGAGGCCTTTCCA 61.065 55.000 6.77 0.00 37.29 3.53
110 111 0.609406 GTTGTCCCAGAGGCCTTTCC 60.609 60.000 6.77 0.00 0.00 3.13
111 112 0.955919 CGTTGTCCCAGAGGCCTTTC 60.956 60.000 6.77 0.00 0.00 2.62
112 113 1.073199 CGTTGTCCCAGAGGCCTTT 59.927 57.895 6.77 0.00 0.00 3.11
113 114 1.201429 ATCGTTGTCCCAGAGGCCTT 61.201 55.000 6.77 0.00 0.00 4.35
114 115 0.325296 TATCGTTGTCCCAGAGGCCT 60.325 55.000 3.86 3.86 0.00 5.19
115 116 0.105039 CTATCGTTGTCCCAGAGGCC 59.895 60.000 0.00 0.00 0.00 5.19
116 117 0.824759 ACTATCGTTGTCCCAGAGGC 59.175 55.000 0.00 0.00 0.00 4.70
117 118 3.005897 CCATACTATCGTTGTCCCAGAGG 59.994 52.174 0.00 0.00 0.00 3.69
118 119 3.553096 GCCATACTATCGTTGTCCCAGAG 60.553 52.174 0.00 0.00 0.00 3.35
119 120 2.364324 GCCATACTATCGTTGTCCCAGA 59.636 50.000 0.00 0.00 0.00 3.86
120 121 2.365617 AGCCATACTATCGTTGTCCCAG 59.634 50.000 0.00 0.00 0.00 4.45
121 122 2.394632 AGCCATACTATCGTTGTCCCA 58.605 47.619 0.00 0.00 0.00 4.37
122 123 4.304939 GTTAGCCATACTATCGTTGTCCC 58.695 47.826 0.00 0.00 0.00 4.46
123 124 4.202182 TGGTTAGCCATACTATCGTTGTCC 60.202 45.833 0.00 0.00 40.46 4.02
124 125 4.940463 TGGTTAGCCATACTATCGTTGTC 58.060 43.478 0.00 0.00 40.46 3.18
125 126 5.347620 TTGGTTAGCCATACTATCGTTGT 57.652 39.130 0.00 0.00 45.56 3.32
126 127 4.211374 GCTTGGTTAGCCATACTATCGTTG 59.789 45.833 0.00 0.00 45.56 4.10
127 128 4.377897 GCTTGGTTAGCCATACTATCGTT 58.622 43.478 0.00 0.00 45.56 3.85
128 129 3.991367 GCTTGGTTAGCCATACTATCGT 58.009 45.455 0.00 0.00 45.56 3.73
140 141 8.424274 AAAATGAAGTTGAAAAGCTTGGTTAG 57.576 30.769 0.00 0.00 0.00 2.34
141 142 8.785329 AAAAATGAAGTTGAAAAGCTTGGTTA 57.215 26.923 0.00 0.00 0.00 2.85
142 143 7.412891 CGAAAAATGAAGTTGAAAAGCTTGGTT 60.413 33.333 0.00 0.00 0.00 3.67
143 144 6.035975 CGAAAAATGAAGTTGAAAAGCTTGGT 59.964 34.615 0.00 0.00 0.00 3.67
144 145 6.413269 CGAAAAATGAAGTTGAAAAGCTTGG 58.587 36.000 0.00 0.00 0.00 3.61
145 146 6.413269 CCGAAAAATGAAGTTGAAAAGCTTG 58.587 36.000 0.00 0.00 0.00 4.01
146 147 5.523552 CCCGAAAAATGAAGTTGAAAAGCTT 59.476 36.000 0.00 0.00 0.00 3.74
147 148 5.049828 CCCGAAAAATGAAGTTGAAAAGCT 58.950 37.500 0.00 0.00 0.00 3.74
148 149 4.318760 GCCCGAAAAATGAAGTTGAAAAGC 60.319 41.667 0.00 0.00 0.00 3.51
149 150 4.808364 TGCCCGAAAAATGAAGTTGAAAAG 59.192 37.500 0.00 0.00 0.00 2.27
150 151 4.759782 TGCCCGAAAAATGAAGTTGAAAA 58.240 34.783 0.00 0.00 0.00 2.29
151 152 4.392921 TGCCCGAAAAATGAAGTTGAAA 57.607 36.364 0.00 0.00 0.00 2.69
152 153 4.392921 TTGCCCGAAAAATGAAGTTGAA 57.607 36.364 0.00 0.00 0.00 2.69
153 154 4.116238 GTTTGCCCGAAAAATGAAGTTGA 58.884 39.130 0.00 0.00 0.00 3.18
154 155 3.868077 TGTTTGCCCGAAAAATGAAGTTG 59.132 39.130 0.00 0.00 0.00 3.16
155 156 4.130286 TGTTTGCCCGAAAAATGAAGTT 57.870 36.364 0.00 0.00 0.00 2.66
156 157 3.810310 TGTTTGCCCGAAAAATGAAGT 57.190 38.095 0.00 0.00 0.00 3.01
157 158 4.367450 TCTTGTTTGCCCGAAAAATGAAG 58.633 39.130 0.00 0.00 0.00 3.02
158 159 4.392921 TCTTGTTTGCCCGAAAAATGAA 57.607 36.364 0.00 0.00 0.00 2.57
159 160 4.305769 CATCTTGTTTGCCCGAAAAATGA 58.694 39.130 0.00 0.00 0.00 2.57
160 161 3.120580 GCATCTTGTTTGCCCGAAAAATG 60.121 43.478 0.00 0.00 33.95 2.32
161 162 3.066380 GCATCTTGTTTGCCCGAAAAAT 58.934 40.909 0.00 0.00 33.95 1.82
162 163 2.478831 GCATCTTGTTTGCCCGAAAAA 58.521 42.857 0.00 0.00 33.95 1.94
163 164 2.147436 GCATCTTGTTTGCCCGAAAA 57.853 45.000 0.00 0.00 33.95 2.29
164 165 3.883997 GCATCTTGTTTGCCCGAAA 57.116 47.368 0.00 0.00 33.95 3.46
170 171 3.648339 TTCTTCTGGCATCTTGTTTGC 57.352 42.857 0.00 0.00 39.41 3.68
171 172 5.182570 TCTCATTCTTCTGGCATCTTGTTTG 59.817 40.000 0.00 0.00 0.00 2.93
172 173 5.319453 TCTCATTCTTCTGGCATCTTGTTT 58.681 37.500 0.00 0.00 0.00 2.83
173 174 4.914983 TCTCATTCTTCTGGCATCTTGTT 58.085 39.130 0.00 0.00 0.00 2.83
174 175 4.019501 ACTCTCATTCTTCTGGCATCTTGT 60.020 41.667 0.00 0.00 0.00 3.16
175 176 4.515361 ACTCTCATTCTTCTGGCATCTTG 58.485 43.478 0.00 0.00 0.00 3.02
176 177 4.840716 ACTCTCATTCTTCTGGCATCTT 57.159 40.909 0.00 0.00 0.00 2.40
177 178 7.795534 ATATACTCTCATTCTTCTGGCATCT 57.204 36.000 0.00 0.00 0.00 2.90
178 179 9.585099 CTAATATACTCTCATTCTTCTGGCATC 57.415 37.037 0.00 0.00 0.00 3.91
179 180 9.099071 ACTAATATACTCTCATTCTTCTGGCAT 57.901 33.333 0.00 0.00 0.00 4.40
180 181 8.484214 ACTAATATACTCTCATTCTTCTGGCA 57.516 34.615 0.00 0.00 0.00 4.92
181 182 9.849166 GTACTAATATACTCTCATTCTTCTGGC 57.151 37.037 0.00 0.00 0.00 4.85
199 200 9.667107 CCTTGTTCTTGAAGATTGGTACTAATA 57.333 33.333 4.22 0.00 0.00 0.98
200 201 7.611855 CCCTTGTTCTTGAAGATTGGTACTAAT 59.388 37.037 3.84 3.84 0.00 1.73
201 202 6.940298 CCCTTGTTCTTGAAGATTGGTACTAA 59.060 38.462 0.00 0.00 0.00 2.24
202 203 6.472887 CCCTTGTTCTTGAAGATTGGTACTA 58.527 40.000 0.00 0.00 0.00 1.82
203 204 5.316987 CCCTTGTTCTTGAAGATTGGTACT 58.683 41.667 0.00 0.00 0.00 2.73
204 205 4.459337 CCCCTTGTTCTTGAAGATTGGTAC 59.541 45.833 0.00 0.00 0.00 3.34
205 206 4.508405 CCCCCTTGTTCTTGAAGATTGGTA 60.508 45.833 0.00 0.00 0.00 3.25
206 207 3.500343 CCCCTTGTTCTTGAAGATTGGT 58.500 45.455 0.00 0.00 0.00 3.67
207 208 2.827921 CCCCCTTGTTCTTGAAGATTGG 59.172 50.000 0.00 0.00 0.00 3.16
208 209 3.766545 TCCCCCTTGTTCTTGAAGATTG 58.233 45.455 0.00 0.00 0.00 2.67
209 210 4.202716 ACATCCCCCTTGTTCTTGAAGATT 60.203 41.667 0.00 0.00 0.00 2.40
210 211 3.334881 ACATCCCCCTTGTTCTTGAAGAT 59.665 43.478 0.00 0.00 0.00 2.40
211 212 2.716424 ACATCCCCCTTGTTCTTGAAGA 59.284 45.455 0.00 0.00 0.00 2.87
212 213 3.160679 ACATCCCCCTTGTTCTTGAAG 57.839 47.619 0.00 0.00 0.00 3.02
213 214 3.496331 GAACATCCCCCTTGTTCTTGAA 58.504 45.455 8.82 0.00 46.03 2.69
214 215 3.154827 GAACATCCCCCTTGTTCTTGA 57.845 47.619 8.82 0.00 46.03 3.02
219 220 2.065799 ACTCTGAACATCCCCCTTGTT 58.934 47.619 0.00 0.00 39.91 2.83
220 221 1.747444 ACTCTGAACATCCCCCTTGT 58.253 50.000 0.00 0.00 0.00 3.16
221 222 2.224867 ACAACTCTGAACATCCCCCTTG 60.225 50.000 0.00 0.00 0.00 3.61
222 223 2.065799 ACAACTCTGAACATCCCCCTT 58.934 47.619 0.00 0.00 0.00 3.95
223 224 1.747444 ACAACTCTGAACATCCCCCT 58.253 50.000 0.00 0.00 0.00 4.79
224 225 2.572104 AGTACAACTCTGAACATCCCCC 59.428 50.000 0.00 0.00 0.00 5.40
225 226 3.983044 AGTACAACTCTGAACATCCCC 57.017 47.619 0.00 0.00 0.00 4.81
226 227 9.262358 GATAATTAGTACAACTCTGAACATCCC 57.738 37.037 0.00 0.00 0.00 3.85
227 228 8.969267 CGATAATTAGTACAACTCTGAACATCC 58.031 37.037 0.00 0.00 0.00 3.51
228 229 9.517609 ACGATAATTAGTACAACTCTGAACATC 57.482 33.333 0.00 0.00 0.00 3.06
229 230 9.302345 CACGATAATTAGTACAACTCTGAACAT 57.698 33.333 0.00 0.00 0.00 2.71
230 231 7.758076 CCACGATAATTAGTACAACTCTGAACA 59.242 37.037 0.00 0.00 0.00 3.18
231 232 7.972277 TCCACGATAATTAGTACAACTCTGAAC 59.028 37.037 0.00 0.00 0.00 3.18
232 233 8.058667 TCCACGATAATTAGTACAACTCTGAA 57.941 34.615 0.00 0.00 0.00 3.02
233 234 7.634671 TCCACGATAATTAGTACAACTCTGA 57.365 36.000 0.00 0.00 0.00 3.27
234 235 8.873215 ATTCCACGATAATTAGTACAACTCTG 57.127 34.615 0.00 0.00 0.00 3.35
238 239 9.859692 GCTTAATTCCACGATAATTAGTACAAC 57.140 33.333 0.00 0.00 32.10 3.32
239 240 9.826574 AGCTTAATTCCACGATAATTAGTACAA 57.173 29.630 0.00 0.00 32.10 2.41
240 241 9.256477 CAGCTTAATTCCACGATAATTAGTACA 57.744 33.333 0.00 0.00 32.10 2.90
241 242 9.472361 TCAGCTTAATTCCACGATAATTAGTAC 57.528 33.333 0.00 0.00 32.10 2.73
243 244 8.993121 CATCAGCTTAATTCCACGATAATTAGT 58.007 33.333 0.00 0.00 32.10 2.24
244 245 9.208022 TCATCAGCTTAATTCCACGATAATTAG 57.792 33.333 0.00 0.00 32.10 1.73
245 246 9.208022 CTCATCAGCTTAATTCCACGATAATTA 57.792 33.333 0.00 0.00 0.00 1.40
246 247 7.308229 GCTCATCAGCTTAATTCCACGATAATT 60.308 37.037 0.00 0.00 43.09 1.40
247 248 6.148480 GCTCATCAGCTTAATTCCACGATAAT 59.852 38.462 0.00 0.00 43.09 1.28
248 249 5.466728 GCTCATCAGCTTAATTCCACGATAA 59.533 40.000 0.00 0.00 43.09 1.75
249 250 4.991056 GCTCATCAGCTTAATTCCACGATA 59.009 41.667 0.00 0.00 43.09 2.92
250 251 3.812053 GCTCATCAGCTTAATTCCACGAT 59.188 43.478 0.00 0.00 43.09 3.73
251 252 3.198068 GCTCATCAGCTTAATTCCACGA 58.802 45.455 0.00 0.00 43.09 4.35
252 253 2.289002 GGCTCATCAGCTTAATTCCACG 59.711 50.000 0.00 0.00 46.03 4.94
253 254 3.282021 TGGCTCATCAGCTTAATTCCAC 58.718 45.455 0.00 0.00 46.03 4.02
254 255 3.650281 TGGCTCATCAGCTTAATTCCA 57.350 42.857 0.00 0.00 46.03 3.53
255 256 7.928307 TTATATGGCTCATCAGCTTAATTCC 57.072 36.000 0.00 0.00 46.03 3.01
256 257 9.170734 TCATTATATGGCTCATCAGCTTAATTC 57.829 33.333 0.00 0.00 46.03 2.17
257 258 9.524496 TTCATTATATGGCTCATCAGCTTAATT 57.476 29.630 0.00 0.00 46.03 1.40
258 259 9.175312 CTTCATTATATGGCTCATCAGCTTAAT 57.825 33.333 0.00 0.00 46.03 1.40
259 260 7.120285 GCTTCATTATATGGCTCATCAGCTTAA 59.880 37.037 0.00 0.00 46.03 1.85
260 261 6.596888 GCTTCATTATATGGCTCATCAGCTTA 59.403 38.462 0.00 0.00 46.03 3.09
261 262 5.415077 GCTTCATTATATGGCTCATCAGCTT 59.585 40.000 0.00 0.00 46.03 3.74
262 263 4.942483 GCTTCATTATATGGCTCATCAGCT 59.058 41.667 0.00 0.00 46.03 4.24
263 264 4.942483 AGCTTCATTATATGGCTCATCAGC 59.058 41.667 0.00 0.00 46.06 4.26
264 265 7.226918 CCATAGCTTCATTATATGGCTCATCAG 59.773 40.741 0.00 0.00 39.52 2.90
265 266 7.052248 CCATAGCTTCATTATATGGCTCATCA 58.948 38.462 0.00 0.00 39.52 3.07
266 267 6.485984 CCCATAGCTTCATTATATGGCTCATC 59.514 42.308 4.18 0.00 43.05 2.92
267 268 6.159222 TCCCATAGCTTCATTATATGGCTCAT 59.841 38.462 4.18 0.00 43.05 2.90
268 269 5.488561 TCCCATAGCTTCATTATATGGCTCA 59.511 40.000 4.18 0.00 43.05 4.26
269 270 5.994250 TCCCATAGCTTCATTATATGGCTC 58.006 41.667 4.18 0.00 43.05 4.70
270 271 5.728253 TCTCCCATAGCTTCATTATATGGCT 59.272 40.000 4.18 0.00 43.05 4.75
271 272 5.994250 TCTCCCATAGCTTCATTATATGGC 58.006 41.667 4.18 0.00 43.05 4.40
272 273 7.093156 TGACTCTCCCATAGCTTCATTATATGG 60.093 40.741 0.00 0.00 43.71 2.74
273 274 7.845037 TGACTCTCCCATAGCTTCATTATATG 58.155 38.462 0.00 0.00 0.00 1.78
274 275 8.484575 CATGACTCTCCCATAGCTTCATTATAT 58.515 37.037 0.00 0.00 28.88 0.86
275 276 7.675619 TCATGACTCTCCCATAGCTTCATTATA 59.324 37.037 0.00 0.00 28.88 0.98
276 277 6.499699 TCATGACTCTCCCATAGCTTCATTAT 59.500 38.462 0.00 0.00 28.88 1.28
277 278 5.840693 TCATGACTCTCCCATAGCTTCATTA 59.159 40.000 0.00 0.00 28.88 1.90
278 279 4.657504 TCATGACTCTCCCATAGCTTCATT 59.342 41.667 0.00 0.00 28.88 2.57
279 280 4.229639 TCATGACTCTCCCATAGCTTCAT 58.770 43.478 0.00 0.00 30.52 2.57
280 281 3.640498 CTCATGACTCTCCCATAGCTTCA 59.360 47.826 0.00 0.00 0.00 3.02
281 282 3.894427 TCTCATGACTCTCCCATAGCTTC 59.106 47.826 0.00 0.00 0.00 3.86
282 283 3.896888 CTCTCATGACTCTCCCATAGCTT 59.103 47.826 0.00 0.00 0.00 3.74
283 284 3.499338 CTCTCATGACTCTCCCATAGCT 58.501 50.000 0.00 0.00 0.00 3.32
284 285 2.029110 GCTCTCATGACTCTCCCATAGC 60.029 54.545 0.00 0.00 0.00 2.97
285 286 3.229293 TGCTCTCATGACTCTCCCATAG 58.771 50.000 0.00 0.00 0.00 2.23
286 287 3.319031 TGCTCTCATGACTCTCCCATA 57.681 47.619 0.00 0.00 0.00 2.74
287 288 2.171568 TGCTCTCATGACTCTCCCAT 57.828 50.000 0.00 0.00 0.00 4.00
288 289 2.037901 GATGCTCTCATGACTCTCCCA 58.962 52.381 0.00 0.00 31.96 4.37
289 290 2.318908 AGATGCTCTCATGACTCTCCC 58.681 52.381 0.00 0.00 31.96 4.30
290 291 3.384146 TGAAGATGCTCTCATGACTCTCC 59.616 47.826 0.00 0.00 31.96 3.71
291 292 4.652421 TGAAGATGCTCTCATGACTCTC 57.348 45.455 0.00 0.00 31.96 3.20
292 293 4.222366 TGTTGAAGATGCTCTCATGACTCT 59.778 41.667 0.00 0.00 31.96 3.24
293 294 4.329528 GTGTTGAAGATGCTCTCATGACTC 59.670 45.833 0.00 0.00 31.96 3.36
294 295 4.252073 GTGTTGAAGATGCTCTCATGACT 58.748 43.478 0.00 0.00 31.96 3.41
295 296 3.061831 CGTGTTGAAGATGCTCTCATGAC 59.938 47.826 0.00 0.00 31.96 3.06
296 297 3.256558 CGTGTTGAAGATGCTCTCATGA 58.743 45.455 0.00 0.00 31.96 3.07
297 298 2.222976 GCGTGTTGAAGATGCTCTCATG 60.223 50.000 0.00 0.00 31.96 3.07
298 299 2.005451 GCGTGTTGAAGATGCTCTCAT 58.995 47.619 0.00 0.00 35.17 2.90
299 300 1.432514 GCGTGTTGAAGATGCTCTCA 58.567 50.000 0.00 0.00 0.00 3.27
300 301 0.368227 CGCGTGTTGAAGATGCTCTC 59.632 55.000 4.98 0.00 0.00 3.20
310 311 1.849829 CTAATATCGTGCGCGTGTTGA 59.150 47.619 20.50 0.00 39.49 3.18
316 317 1.487231 GGTGCTAATATCGTGCGCG 59.513 57.895 14.79 14.79 38.00 6.86
362 364 4.505217 CAGAACGGATGCACGCGC 62.505 66.667 5.73 0.00 37.37 6.86
371 373 2.682136 TGGATCGCCCAGAACGGA 60.682 61.111 0.00 0.00 40.82 4.69
412 414 1.990799 CGCTGAACCACTTATGTCGA 58.009 50.000 0.00 0.00 0.00 4.20
578 587 3.135457 TCAGCGCGACCGTCCATA 61.135 61.111 12.10 0.00 36.67 2.74
624 633 4.324991 GACAACGGCGGAGGGGTT 62.325 66.667 13.24 0.00 0.00 4.11
637 658 3.959975 GGTTTGCGCTGGCGACAA 61.960 61.111 19.31 17.37 44.10 3.18
640 661 3.950794 CTAGGGTTTGCGCTGGCGA 62.951 63.158 19.31 1.28 44.10 5.54
688 724 2.348998 CGGTGCTTGGAGGAGCTT 59.651 61.111 0.00 0.00 43.11 3.74
689 725 3.710722 CCGGTGCTTGGAGGAGCT 61.711 66.667 0.00 0.00 43.11 4.09
711 747 2.491152 CATGAAAAGGCCGCGCAT 59.509 55.556 8.75 0.00 0.00 4.73
754 790 4.776322 TGGCTTCACGATGGGCCG 62.776 66.667 0.00 0.00 46.72 6.13
755 791 3.134127 GTGGCTTCACGATGGGCC 61.134 66.667 0.00 0.00 44.31 5.80
809 865 3.429372 AACACCTTGCCCGCCTTCA 62.429 57.895 0.00 0.00 0.00 3.02
847 903 0.745128 CGCCTAGAGGAGTCGTCTGT 60.745 60.000 22.59 3.06 37.39 3.41
1077 1184 5.183530 TGAGACCAATGAGAATGTTGGAT 57.816 39.130 10.80 0.00 46.15 3.41
1171 1280 1.303317 TTGCCCGCTCTTCCTTTCC 60.303 57.895 0.00 0.00 0.00 3.13
1255 1364 2.544844 TCTACTTTGATCCCCTCCGT 57.455 50.000 0.00 0.00 0.00 4.69
1256 1365 4.621747 GCATATCTACTTTGATCCCCTCCG 60.622 50.000 0.00 0.00 0.00 4.63
1285 1394 0.755686 GTGCTCCTTCATCCGGATCT 59.244 55.000 15.88 0.00 0.00 2.75
1307 1416 7.433719 TCAATTCCACTTTTGTTGTGTAAATCG 59.566 33.333 0.00 0.00 33.92 3.34
1334 1443 3.119459 AGCGAAGAGATCTTTTCGTGCTA 60.119 43.478 34.95 0.00 45.76 3.49
1335 1444 1.996191 GCGAAGAGATCTTTTCGTGCT 59.004 47.619 34.95 10.45 45.76 4.40
1358 1467 0.389757 TGTTGATTGTCGACCACCGA 59.610 50.000 14.12 0.00 46.35 4.69
1478 1598 5.105473 CCAAAGAAGAAGCATGAACATGGAT 60.105 40.000 15.15 0.00 39.16 3.41
1561 1685 6.954684 ACCTTACATCACTTCTCCTCTTCTTA 59.045 38.462 0.00 0.00 0.00 2.10
1624 1748 5.763204 GTGTTCTTCATGTTCTTGGTAGGAA 59.237 40.000 0.00 0.00 0.00 3.36
1666 1804 2.943033 CTCTTGTGTTTCCCTCGTGTTT 59.057 45.455 0.00 0.00 0.00 2.83
1692 1831 7.936847 TGTGACTATATTCTTGTTGGTTGAGTT 59.063 33.333 0.00 0.00 0.00 3.01
1773 1915 0.040067 CCGGTTACCCTACGTATCGC 60.040 60.000 0.00 0.00 0.00 4.58
1780 1923 3.095332 AGAGAAGAACCGGTTACCCTAC 58.905 50.000 22.33 6.58 0.00 3.18
1801 1944 2.251818 CCTCTTCAAGACCTCCTCACA 58.748 52.381 0.00 0.00 0.00 3.58
1944 2094 4.654262 CCACCTATCTTCTAGGGTTAGCAA 59.346 45.833 3.51 0.00 39.00 3.91
1961 2112 7.353863 AGCCTATATATATGACTCCTCCACCTA 59.646 40.741 5.44 0.00 0.00 3.08
1999 2157 3.087253 CCGAGGCCCATGTACCCA 61.087 66.667 0.00 0.00 0.00 4.51
2035 2193 2.029666 GATCATCCAGACCCCGCG 59.970 66.667 0.00 0.00 0.00 6.46
2086 2252 1.601759 GGCCATCACCCGGATCATG 60.602 63.158 0.73 0.72 32.57 3.07
2133 2299 2.045926 GACATCCAGGCCAACGCT 60.046 61.111 5.01 0.00 34.44 5.07
2172 2338 1.690219 GGATCATCCGGACACCAGCT 61.690 60.000 6.12 0.00 0.00 4.24
2204 2405 3.489229 CGATCCAGATAACTCGCTCAACA 60.489 47.826 0.00 0.00 0.00 3.33
2205 2406 3.046390 CGATCCAGATAACTCGCTCAAC 58.954 50.000 0.00 0.00 0.00 3.18
2209 2411 1.609555 GGACGATCCAGATAACTCGCT 59.390 52.381 0.00 0.00 36.28 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.