Multiple sequence alignment - TraesCS5B01G109400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G109400 chr5B 100.000 2291 0 0 1 2291 153890451 153888161 0.000000e+00 4231
1 TraesCS5B01G109400 chr5D 94.193 1412 56 8 1 1387 387986447 387985037 0.000000e+00 2130
2 TraesCS5B01G109400 chr5D 93.821 1408 62 5 1 1385 374665100 374663695 0.000000e+00 2095
3 TraesCS5B01G109400 chr5D 89.079 467 35 6 1768 2232 188334228 188333776 1.190000e-157 566
4 TraesCS5B01G109400 chr5D 92.079 101 5 2 1386 1484 188334317 188334218 3.070000e-29 139
5 TraesCS5B01G109400 chr6B 94.231 1404 58 3 1 1382 117552512 117551110 0.000000e+00 2122
6 TraesCS5B01G109400 chr6B 91.211 933 61 1 468 1379 664648277 664647345 0.000000e+00 1249
7 TraesCS5B01G109400 chr6D 94.814 1157 38 3 1 1135 341381965 341380809 0.000000e+00 1784
8 TraesCS5B01G109400 chr1D 89.444 1402 124 11 1 1379 86513335 86511935 0.000000e+00 1748
9 TraesCS5B01G109400 chr1D 94.245 1112 38 8 300 1385 6167511 6166400 0.000000e+00 1676
10 TraesCS5B01G109400 chr2B 88.659 1402 135 8 1 1379 221724475 221725875 0.000000e+00 1687
11 TraesCS5B01G109400 chr2B 93.907 279 14 3 1508 1784 776250720 776250443 3.520000e-113 418
12 TraesCS5B01G109400 chr7A 87.714 1400 148 4 2 1379 290622019 290620622 0.000000e+00 1611
13 TraesCS5B01G109400 chr7A 96.565 262 9 0 1508 1769 734933634 734933895 3.500000e-118 435
14 TraesCS5B01G109400 chr5A 89.585 1181 92 8 222 1378 124593018 124594191 0.000000e+00 1471
15 TraesCS5B01G109400 chr5A 90.598 468 38 4 1768 2232 242857214 242857678 1.160000e-172 616
16 TraesCS5B01G109400 chr5A 96.565 262 9 0 1508 1769 45250435 45250174 3.500000e-118 435
17 TraesCS5B01G109400 chr5A 93.939 99 3 2 1388 1484 242857127 242857224 1.830000e-31 147
18 TraesCS5B01G109400 chr1A 83.655 1401 202 6 1 1379 521988771 521987376 0.000000e+00 1293
19 TraesCS5B01G109400 chr4A 91.524 932 52 4 1 906 35573782 35574712 0.000000e+00 1258
20 TraesCS5B01G109400 chr4A 94.604 278 12 3 1512 1786 12206867 12206590 5.850000e-116 427
21 TraesCS5B01G109400 chr3D 95.532 649 22 3 731 1379 366206163 366206804 0.000000e+00 1031
22 TraesCS5B01G109400 chr6A 96.565 262 9 0 1508 1769 181910111 181909850 3.500000e-118 435
23 TraesCS5B01G109400 chr3B 96.565 262 9 0 1508 1769 623667321 623667582 3.500000e-118 435
24 TraesCS5B01G109400 chr3B 96.565 262 9 0 1508 1769 754619720 754619981 3.500000e-118 435
25 TraesCS5B01G109400 chr1B 96.212 264 10 0 1508 1771 636257386 636257649 1.260000e-117 433
26 TraesCS5B01G109400 chr7B 95.849 265 11 0 1508 1772 602082820 602082556 1.630000e-116 429


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G109400 chr5B 153888161 153890451 2290 True 4231.0 4231 100.0000 1 2291 1 chr5B.!!$R1 2290
1 TraesCS5B01G109400 chr5D 387985037 387986447 1410 True 2130.0 2130 94.1930 1 1387 1 chr5D.!!$R2 1386
2 TraesCS5B01G109400 chr5D 374663695 374665100 1405 True 2095.0 2095 93.8210 1 1385 1 chr5D.!!$R1 1384
3 TraesCS5B01G109400 chr5D 188333776 188334317 541 True 352.5 566 90.5790 1386 2232 2 chr5D.!!$R3 846
4 TraesCS5B01G109400 chr6B 117551110 117552512 1402 True 2122.0 2122 94.2310 1 1382 1 chr6B.!!$R1 1381
5 TraesCS5B01G109400 chr6B 664647345 664648277 932 True 1249.0 1249 91.2110 468 1379 1 chr6B.!!$R2 911
6 TraesCS5B01G109400 chr6D 341380809 341381965 1156 True 1784.0 1784 94.8140 1 1135 1 chr6D.!!$R1 1134
7 TraesCS5B01G109400 chr1D 86511935 86513335 1400 True 1748.0 1748 89.4440 1 1379 1 chr1D.!!$R2 1378
8 TraesCS5B01G109400 chr1D 6166400 6167511 1111 True 1676.0 1676 94.2450 300 1385 1 chr1D.!!$R1 1085
9 TraesCS5B01G109400 chr2B 221724475 221725875 1400 False 1687.0 1687 88.6590 1 1379 1 chr2B.!!$F1 1378
10 TraesCS5B01G109400 chr7A 290620622 290622019 1397 True 1611.0 1611 87.7140 2 1379 1 chr7A.!!$R1 1377
11 TraesCS5B01G109400 chr5A 124593018 124594191 1173 False 1471.0 1471 89.5850 222 1378 1 chr5A.!!$F1 1156
12 TraesCS5B01G109400 chr5A 242857127 242857678 551 False 381.5 616 92.2685 1388 2232 2 chr5A.!!$F2 844
13 TraesCS5B01G109400 chr1A 521987376 521988771 1395 True 1293.0 1293 83.6550 1 1379 1 chr1A.!!$R1 1378
14 TraesCS5B01G109400 chr4A 35573782 35574712 930 False 1258.0 1258 91.5240 1 906 1 chr4A.!!$F1 905
15 TraesCS5B01G109400 chr3D 366206163 366206804 641 False 1031.0 1031 95.5320 731 1379 1 chr3D.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 452 1.039233 ATCCCTTGCGGCAAGAATGG 61.039 55.0 37.07 29.36 43.42 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1696 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.0 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 76 6.432472 CCTAAAGAGAATTCACTTTCAGCCTT 59.568 38.462 27.25 10.43 37.76 4.35
92 97 3.077556 AGGACAAGATCGCGGCCT 61.078 61.111 6.13 6.01 0.00 5.19
105 110 1.392710 GCGGCCTAGCTCACTCCTTA 61.393 60.000 0.00 0.00 0.00 2.69
106 111 1.333177 CGGCCTAGCTCACTCCTTAT 58.667 55.000 0.00 0.00 0.00 1.73
357 363 6.375455 GGATCCTAAATCTTCAGAAGTTTGCA 59.625 38.462 10.09 0.00 0.00 4.08
446 452 1.039233 ATCCCTTGCGGCAAGAATGG 61.039 55.000 37.07 29.36 43.42 3.16
466 472 2.032377 GGTCAAAACATCTTTGCGTCGA 60.032 45.455 0.00 0.00 0.00 4.20
670 698 1.064946 TTTGTTGCGCTTTGGGACG 59.935 52.632 9.73 0.00 0.00 4.79
747 775 3.780294 TCACTACCAATGGCCACTATTCT 59.220 43.478 8.16 0.00 0.00 2.40
1027 1056 2.486966 GTTGGCTGGCGCTTCATC 59.513 61.111 7.64 0.00 36.09 2.92
1037 1066 1.002366 GCGCTTCATCATGTTCGACT 58.998 50.000 0.00 0.00 0.00 4.18
1286 1315 2.159156 TGAGTAACATTATGCCGCGAGT 60.159 45.455 8.23 0.00 0.00 4.18
1472 1506 2.124320 CCGCCGATTCCCACCATT 60.124 61.111 0.00 0.00 0.00 3.16
1484 1518 1.074727 CCCACCATTAACACAGGGTCA 59.925 52.381 0.00 0.00 0.00 4.02
1485 1519 2.436417 CCACCATTAACACAGGGTCAG 58.564 52.381 0.00 0.00 0.00 3.51
1486 1520 1.812571 CACCATTAACACAGGGTCAGC 59.187 52.381 0.00 0.00 0.00 4.26
1487 1521 1.705186 ACCATTAACACAGGGTCAGCT 59.295 47.619 0.00 0.00 0.00 4.24
1488 1522 2.910319 ACCATTAACACAGGGTCAGCTA 59.090 45.455 0.00 0.00 0.00 3.32
1489 1523 3.270877 CCATTAACACAGGGTCAGCTAC 58.729 50.000 0.00 0.00 0.00 3.58
1502 1536 4.522722 GTCAGCTACCAGAGTTTACAGT 57.477 45.455 0.00 0.00 0.00 3.55
1503 1537 5.640189 GTCAGCTACCAGAGTTTACAGTA 57.360 43.478 0.00 0.00 0.00 2.74
1504 1538 5.400703 GTCAGCTACCAGAGTTTACAGTAC 58.599 45.833 0.00 0.00 0.00 2.73
1505 1539 5.048224 GTCAGCTACCAGAGTTTACAGTACA 60.048 44.000 0.00 0.00 0.00 2.90
1506 1540 5.537295 TCAGCTACCAGAGTTTACAGTACAA 59.463 40.000 0.00 0.00 0.00 2.41
1507 1541 6.041182 TCAGCTACCAGAGTTTACAGTACAAA 59.959 38.462 0.00 0.00 0.00 2.83
1508 1542 6.874134 CAGCTACCAGAGTTTACAGTACAAAT 59.126 38.462 0.00 0.00 0.00 2.32
1509 1543 7.063544 CAGCTACCAGAGTTTACAGTACAAATC 59.936 40.741 0.00 0.00 0.00 2.17
1510 1544 6.313164 GCTACCAGAGTTTACAGTACAAATCC 59.687 42.308 0.00 0.00 0.00 3.01
1511 1545 5.557866 ACCAGAGTTTACAGTACAAATCCC 58.442 41.667 0.00 0.00 0.00 3.85
1512 1546 4.941873 CCAGAGTTTACAGTACAAATCCCC 59.058 45.833 0.00 0.00 0.00 4.81
1513 1547 5.514136 CCAGAGTTTACAGTACAAATCCCCA 60.514 44.000 0.00 0.00 0.00 4.96
1514 1548 6.001460 CAGAGTTTACAGTACAAATCCCCAA 58.999 40.000 0.00 0.00 0.00 4.12
1515 1549 6.002082 AGAGTTTACAGTACAAATCCCCAAC 58.998 40.000 0.00 0.00 0.00 3.77
1516 1550 5.074804 AGTTTACAGTACAAATCCCCAACC 58.925 41.667 0.00 0.00 0.00 3.77
1517 1551 2.597578 ACAGTACAAATCCCCAACCC 57.402 50.000 0.00 0.00 0.00 4.11
1518 1552 1.783979 ACAGTACAAATCCCCAACCCA 59.216 47.619 0.00 0.00 0.00 4.51
1519 1553 2.167662 CAGTACAAATCCCCAACCCAC 58.832 52.381 0.00 0.00 0.00 4.61
1520 1554 1.076513 AGTACAAATCCCCAACCCACC 59.923 52.381 0.00 0.00 0.00 4.61
1521 1555 1.158904 TACAAATCCCCAACCCACCA 58.841 50.000 0.00 0.00 0.00 4.17
1522 1556 0.178935 ACAAATCCCCAACCCACCAG 60.179 55.000 0.00 0.00 0.00 4.00
1523 1557 0.114168 CAAATCCCCAACCCACCAGA 59.886 55.000 0.00 0.00 0.00 3.86
1524 1558 0.409484 AAATCCCCAACCCACCAGAG 59.591 55.000 0.00 0.00 0.00 3.35
1525 1559 0.776080 AATCCCCAACCCACCAGAGT 60.776 55.000 0.00 0.00 0.00 3.24
1526 1560 0.776080 ATCCCCAACCCACCAGAGTT 60.776 55.000 0.00 0.00 0.00 3.01
1527 1561 1.074951 CCCCAACCCACCAGAGTTC 59.925 63.158 0.00 0.00 0.00 3.01
1528 1562 1.715019 CCCCAACCCACCAGAGTTCA 61.715 60.000 0.00 0.00 0.00 3.18
1529 1563 0.184933 CCCAACCCACCAGAGTTCAA 59.815 55.000 0.00 0.00 0.00 2.69
1530 1564 1.410932 CCCAACCCACCAGAGTTCAAA 60.411 52.381 0.00 0.00 0.00 2.69
1531 1565 2.597455 CCAACCCACCAGAGTTCAAAT 58.403 47.619 0.00 0.00 0.00 2.32
1532 1566 2.558359 CCAACCCACCAGAGTTCAAATC 59.442 50.000 0.00 0.00 0.00 2.17
1533 1567 2.558359 CAACCCACCAGAGTTCAAATCC 59.442 50.000 0.00 0.00 0.00 3.01
1534 1568 2.065799 ACCCACCAGAGTTCAAATCCT 58.934 47.619 0.00 0.00 0.00 3.24
1535 1569 2.224867 ACCCACCAGAGTTCAAATCCTG 60.225 50.000 0.00 0.00 0.00 3.86
1536 1570 2.040278 CCCACCAGAGTTCAAATCCTGA 59.960 50.000 0.00 0.00 0.00 3.86
1537 1571 3.308688 CCCACCAGAGTTCAAATCCTGAT 60.309 47.826 0.00 0.00 32.78 2.90
1538 1572 3.693085 CCACCAGAGTTCAAATCCTGATG 59.307 47.826 0.00 0.00 32.78 3.07
1539 1573 3.128242 CACCAGAGTTCAAATCCTGATGC 59.872 47.826 0.00 0.00 32.78 3.91
1540 1574 3.009916 ACCAGAGTTCAAATCCTGATGCT 59.990 43.478 0.00 0.00 32.78 3.79
1541 1575 3.626670 CCAGAGTTCAAATCCTGATGCTC 59.373 47.826 0.00 0.00 37.01 4.26
1542 1576 3.309138 CAGAGTTCAAATCCTGATGCTCG 59.691 47.826 0.00 0.00 39.50 5.03
1543 1577 2.012673 AGTTCAAATCCTGATGCTCGC 58.987 47.619 0.00 0.00 32.78 5.03
1544 1578 1.739466 GTTCAAATCCTGATGCTCGCA 59.261 47.619 0.00 0.00 32.78 5.10
1545 1579 2.336945 TCAAATCCTGATGCTCGCAT 57.663 45.000 3.70 3.70 39.69 4.73
1546 1580 2.646930 TCAAATCCTGATGCTCGCATT 58.353 42.857 5.79 0.00 36.70 3.56
1547 1581 3.807553 TCAAATCCTGATGCTCGCATTA 58.192 40.909 5.79 0.89 36.70 1.90
1548 1582 4.392047 TCAAATCCTGATGCTCGCATTAT 58.608 39.130 5.79 0.00 36.70 1.28
1549 1583 4.823442 TCAAATCCTGATGCTCGCATTATT 59.177 37.500 5.79 2.29 36.70 1.40
1550 1584 5.300034 TCAAATCCTGATGCTCGCATTATTT 59.700 36.000 5.79 7.47 36.70 1.40
1551 1585 5.368256 AATCCTGATGCTCGCATTATTTC 57.632 39.130 5.79 0.00 36.70 2.17
1552 1586 4.077300 TCCTGATGCTCGCATTATTTCT 57.923 40.909 5.79 0.00 36.70 2.52
1553 1587 3.811497 TCCTGATGCTCGCATTATTTCTG 59.189 43.478 5.79 0.00 36.70 3.02
1554 1588 3.058432 CCTGATGCTCGCATTATTTCTGG 60.058 47.826 5.79 3.80 36.70 3.86
1555 1589 3.807553 TGATGCTCGCATTATTTCTGGA 58.192 40.909 5.79 0.00 36.70 3.86
1556 1590 4.392047 TGATGCTCGCATTATTTCTGGAT 58.608 39.130 5.79 0.00 36.70 3.41
1557 1591 4.823442 TGATGCTCGCATTATTTCTGGATT 59.177 37.500 5.79 0.00 36.70 3.01
1558 1592 5.300034 TGATGCTCGCATTATTTCTGGATTT 59.700 36.000 5.79 0.00 36.70 2.17
1559 1593 6.486320 TGATGCTCGCATTATTTCTGGATTTA 59.514 34.615 5.79 0.00 36.70 1.40
1560 1594 6.882610 TGCTCGCATTATTTCTGGATTTAT 57.117 33.333 0.00 0.00 0.00 1.40
1561 1595 7.275888 TGCTCGCATTATTTCTGGATTTATT 57.724 32.000 0.00 0.00 0.00 1.40
1562 1596 7.715657 TGCTCGCATTATTTCTGGATTTATTT 58.284 30.769 0.00 0.00 0.00 1.40
1563 1597 7.862372 TGCTCGCATTATTTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
1564 1598 7.862372 GCTCGCATTATTTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
1565 1599 9.390795 CTCGCATTATTTCTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
1566 1600 8.352201 TCGCATTATTTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
1567 1601 8.352201 CGCATTATTTCTGGATTTATTTCAGGA 58.648 33.333 0.00 0.00 0.00 3.86
1573 1607 6.942532 TCTGGATTTATTTCAGGATTTCCG 57.057 37.500 0.00 0.00 42.08 4.30
1574 1608 5.827797 TCTGGATTTATTTCAGGATTTCCGG 59.172 40.000 0.00 0.00 42.08 5.14
1575 1609 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
1576 1610 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
1577 1611 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
1578 1612 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
1579 1613 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
1580 1614 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
1581 1615 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
1592 1626 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
1593 1627 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
1594 1628 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
1595 1629 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
1596 1630 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
1597 1631 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
1598 1632 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
1599 1633 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
1600 1634 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
1601 1635 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
1602 1636 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
1603 1637 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
1626 1660 2.021106 GACGACGAGGCGACTACG 59.979 66.667 4.95 9.81 44.43 3.51
1627 1661 3.431683 GACGACGAGGCGACTACGG 62.432 68.421 4.95 0.00 44.43 4.02
1628 1662 3.494336 CGACGAGGCGACTACGGT 61.494 66.667 13.41 2.17 44.43 4.83
1629 1663 2.099831 GACGAGGCGACTACGGTG 59.900 66.667 13.41 0.00 44.43 4.94
1630 1664 2.359107 ACGAGGCGACTACGGTGA 60.359 61.111 13.41 0.00 44.43 4.02
1631 1665 2.099831 CGAGGCGACTACGGTGAC 59.900 66.667 0.00 0.00 44.43 3.67
1632 1666 2.396955 CGAGGCGACTACGGTGACT 61.397 63.158 0.00 0.00 44.43 3.41
1633 1667 1.881602 GAGGCGACTACGGTGACTT 59.118 57.895 0.00 0.00 44.43 3.01
1634 1668 0.243095 GAGGCGACTACGGTGACTTT 59.757 55.000 0.00 0.00 44.43 2.66
1635 1669 0.038526 AGGCGACTACGGTGACTTTG 60.039 55.000 0.00 0.00 40.61 2.77
1636 1670 0.319297 GGCGACTACGGTGACTTTGT 60.319 55.000 0.00 0.00 40.15 2.83
1637 1671 1.068333 GGCGACTACGGTGACTTTGTA 60.068 52.381 0.00 0.00 40.15 2.41
1638 1672 2.607771 GGCGACTACGGTGACTTTGTAA 60.608 50.000 0.00 0.00 40.15 2.41
1639 1673 3.052036 GCGACTACGGTGACTTTGTAAA 58.948 45.455 0.00 0.00 40.15 2.01
1640 1674 3.676646 GCGACTACGGTGACTTTGTAAAT 59.323 43.478 0.00 0.00 40.15 1.40
1641 1675 4.201561 GCGACTACGGTGACTTTGTAAATC 60.202 45.833 0.00 0.00 40.15 2.17
1642 1676 5.159209 CGACTACGGTGACTTTGTAAATCT 58.841 41.667 0.00 0.00 35.72 2.40
1643 1677 5.285607 CGACTACGGTGACTTTGTAAATCTC 59.714 44.000 0.00 0.00 35.72 2.75
1644 1678 6.092955 ACTACGGTGACTTTGTAAATCTCA 57.907 37.500 0.00 0.00 0.00 3.27
1645 1679 6.518493 ACTACGGTGACTTTGTAAATCTCAA 58.482 36.000 0.00 0.00 0.00 3.02
1646 1680 5.924475 ACGGTGACTTTGTAAATCTCAAG 57.076 39.130 0.00 0.00 0.00 3.02
1647 1681 5.607477 ACGGTGACTTTGTAAATCTCAAGA 58.393 37.500 0.00 0.00 0.00 3.02
1648 1682 6.231211 ACGGTGACTTTGTAAATCTCAAGAT 58.769 36.000 0.00 0.00 36.07 2.40
1649 1683 6.147821 ACGGTGACTTTGTAAATCTCAAGATG 59.852 38.462 0.00 0.00 34.49 2.90
1650 1684 6.368791 CGGTGACTTTGTAAATCTCAAGATGA 59.631 38.462 0.00 0.00 34.49 2.92
1651 1685 7.065085 CGGTGACTTTGTAAATCTCAAGATGAT 59.935 37.037 0.00 0.00 34.49 2.45
1652 1686 9.383519 GGTGACTTTGTAAATCTCAAGATGATA 57.616 33.333 0.00 0.00 34.49 2.15
1655 1689 9.875675 GACTTTGTAAATCTCAAGATGATATGC 57.124 33.333 0.00 0.00 34.49 3.14
1656 1690 8.844244 ACTTTGTAAATCTCAAGATGATATGCC 58.156 33.333 0.00 0.00 34.49 4.40
1657 1691 7.425577 TTGTAAATCTCAAGATGATATGCCG 57.574 36.000 0.00 0.00 34.49 5.69
1658 1692 5.934043 TGTAAATCTCAAGATGATATGCCGG 59.066 40.000 0.00 0.00 34.49 6.13
1659 1693 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
1660 1694 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
1661 1695 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
1662 1696 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
1663 1697 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
1664 1698 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
1665 1699 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
1666 1700 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
1667 1701 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
1668 1702 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
1669 1703 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
1670 1704 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
1671 1705 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
1672 1706 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
1673 1707 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
1674 1708 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
1675 1709 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
1676 1710 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
1677 1711 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
1678 1712 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
1679 1713 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
1680 1714 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
1681 1715 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
1682 1716 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
1683 1717 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
1684 1718 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
1685 1719 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
1686 1720 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
1687 1721 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
1688 1722 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
1689 1723 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
1690 1724 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
1691 1725 0.941963 AGGTGCTCATAGGGGTAGGA 59.058 55.000 0.00 0.00 0.00 2.94
1692 1726 1.509961 AGGTGCTCATAGGGGTAGGAT 59.490 52.381 0.00 0.00 0.00 3.24
1693 1727 1.625818 GGTGCTCATAGGGGTAGGATG 59.374 57.143 0.00 0.00 0.00 3.51
1694 1728 2.330216 GTGCTCATAGGGGTAGGATGT 58.670 52.381 0.00 0.00 0.00 3.06
1695 1729 2.037772 GTGCTCATAGGGGTAGGATGTG 59.962 54.545 0.00 0.00 0.00 3.21
1696 1730 1.002544 GCTCATAGGGGTAGGATGTGC 59.997 57.143 0.00 0.00 0.00 4.57
1697 1731 1.273606 CTCATAGGGGTAGGATGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
1698 1732 1.048601 CATAGGGGTAGGATGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
1699 1733 1.048601 ATAGGGGTAGGATGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
1700 1734 0.324923 TAGGGGTAGGATGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
1701 1735 1.449601 GGGGTAGGATGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
1702 1736 1.295423 GGGTAGGATGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
1703 1737 1.019278 GGGTAGGATGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
1704 1738 1.635663 GGTAGGATGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
1705 1739 1.736282 TAGGATGTGCGTGTGTGCG 60.736 57.895 0.00 0.00 37.81 5.34
1706 1740 2.428960 TAGGATGTGCGTGTGTGCGT 62.429 55.000 0.00 0.00 37.81 5.24
1707 1741 2.631428 GATGTGCGTGTGTGCGTT 59.369 55.556 0.00 0.00 37.81 4.84
1708 1742 1.438710 GATGTGCGTGTGTGCGTTC 60.439 57.895 0.00 0.00 37.81 3.95
1709 1743 2.100024 GATGTGCGTGTGTGCGTTCA 62.100 55.000 0.00 0.00 37.81 3.18
1710 1744 1.506309 ATGTGCGTGTGTGCGTTCAT 61.506 50.000 0.00 0.00 37.81 2.57
1711 1745 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
1712 1746 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
1713 1747 0.319125 TGCGTGTGTGCGTTCATAGA 60.319 50.000 0.00 0.00 37.81 1.98
1714 1748 0.366871 GCGTGTGTGCGTTCATAGAG 59.633 55.000 0.00 0.00 0.00 2.43
1715 1749 1.977188 CGTGTGTGCGTTCATAGAGA 58.023 50.000 0.00 0.00 0.00 3.10
1716 1750 2.530177 CGTGTGTGCGTTCATAGAGAT 58.470 47.619 0.00 0.00 0.00 2.75
1717 1751 2.279921 CGTGTGTGCGTTCATAGAGATG 59.720 50.000 0.00 0.00 0.00 2.90
1718 1752 3.511699 GTGTGTGCGTTCATAGAGATGA 58.488 45.455 0.00 0.00 40.45 2.92
1719 1753 3.549471 GTGTGTGCGTTCATAGAGATGAG 59.451 47.826 0.00 0.00 43.03 2.90
1720 1754 3.193479 TGTGTGCGTTCATAGAGATGAGT 59.807 43.478 0.00 0.00 43.03 3.41
1721 1755 3.549471 GTGTGCGTTCATAGAGATGAGTG 59.451 47.826 0.00 0.00 43.03 3.51
1722 1756 3.193479 TGTGCGTTCATAGAGATGAGTGT 59.807 43.478 0.00 0.00 43.03 3.55
1723 1757 4.398044 TGTGCGTTCATAGAGATGAGTGTA 59.602 41.667 0.00 0.00 43.03 2.90
1724 1758 5.067805 TGTGCGTTCATAGAGATGAGTGTAT 59.932 40.000 0.00 0.00 43.03 2.29
1725 1759 5.400782 GTGCGTTCATAGAGATGAGTGTATG 59.599 44.000 0.00 0.00 43.03 2.39
1726 1760 4.384247 GCGTTCATAGAGATGAGTGTATGC 59.616 45.833 0.00 0.00 43.03 3.14
1727 1761 4.614702 CGTTCATAGAGATGAGTGTATGCG 59.385 45.833 0.00 0.00 43.03 4.73
1728 1762 4.166187 TCATAGAGATGAGTGTATGCGC 57.834 45.455 0.00 0.00 37.15 6.09
1729 1763 2.688364 TAGAGATGAGTGTATGCGCG 57.312 50.000 0.00 0.00 0.00 6.86
1730 1764 0.741326 AGAGATGAGTGTATGCGCGT 59.259 50.000 8.43 7.55 0.00 6.01
1731 1765 0.848942 GAGATGAGTGTATGCGCGTG 59.151 55.000 13.61 0.00 0.00 5.34
1732 1766 0.173481 AGATGAGTGTATGCGCGTGT 59.827 50.000 13.61 0.00 0.00 4.49
1733 1767 1.404035 AGATGAGTGTATGCGCGTGTA 59.596 47.619 13.61 0.00 0.00 2.90
1734 1768 2.034685 AGATGAGTGTATGCGCGTGTAT 59.965 45.455 13.61 4.63 0.00 2.29
1735 1769 3.252458 AGATGAGTGTATGCGCGTGTATA 59.748 43.478 13.61 2.40 0.00 1.47
1736 1770 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
1737 1771 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
1738 1772 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
1739 1773 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
1740 1774 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
1743 1777 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
1744 1778 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
1745 1779 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
1746 1780 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
1747 1781 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
1748 1782 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
1749 1783 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
1750 1784 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
1751 1785 4.607955 GTGTATATGAGCGCTTGTGTCTA 58.392 43.478 13.26 0.00 0.00 2.59
1752 1786 5.223382 GTGTATATGAGCGCTTGTGTCTAT 58.777 41.667 13.26 5.57 0.00 1.98
1753 1787 6.379386 GTGTATATGAGCGCTTGTGTCTATA 58.621 40.000 13.26 4.61 0.00 1.31
1754 1788 6.305877 GTGTATATGAGCGCTTGTGTCTATAC 59.694 42.308 13.26 15.61 0.00 1.47
1755 1789 5.713792 ATATGAGCGCTTGTGTCTATACT 57.286 39.130 13.26 0.00 0.00 2.12
1756 1790 3.150848 TGAGCGCTTGTGTCTATACTG 57.849 47.619 13.26 0.00 0.00 2.74
1757 1791 2.752903 TGAGCGCTTGTGTCTATACTGA 59.247 45.455 13.26 0.00 0.00 3.41
1758 1792 3.381590 TGAGCGCTTGTGTCTATACTGAT 59.618 43.478 13.26 0.00 0.00 2.90
1759 1793 3.711086 AGCGCTTGTGTCTATACTGATG 58.289 45.455 2.64 0.00 0.00 3.07
1760 1794 2.219674 GCGCTTGTGTCTATACTGATGC 59.780 50.000 0.00 0.00 0.00 3.91
1761 1795 3.711086 CGCTTGTGTCTATACTGATGCT 58.289 45.455 0.00 0.00 0.00 3.79
1762 1796 4.793028 GCGCTTGTGTCTATACTGATGCTA 60.793 45.833 0.00 0.00 0.00 3.49
1763 1797 5.281727 CGCTTGTGTCTATACTGATGCTAA 58.718 41.667 0.00 0.00 0.00 3.09
1764 1798 5.748630 CGCTTGTGTCTATACTGATGCTAAA 59.251 40.000 0.00 0.00 0.00 1.85
1765 1799 6.255670 CGCTTGTGTCTATACTGATGCTAAAA 59.744 38.462 0.00 0.00 0.00 1.52
1766 1800 7.201522 CGCTTGTGTCTATACTGATGCTAAAAA 60.202 37.037 0.00 0.00 0.00 1.94
1795 1829 0.249447 TCAGCTACGCGGGATTCATG 60.249 55.000 12.47 0.00 0.00 3.07
1807 1841 1.681166 GGATTCATGGAGTGCAGTGCT 60.681 52.381 17.60 0.00 0.00 4.40
1809 1843 1.241165 TTCATGGAGTGCAGTGCTTG 58.759 50.000 19.11 19.11 0.00 4.01
1850 1884 6.819284 TCTGTGATGCATATGACACTAATCA 58.181 36.000 20.26 10.88 34.81 2.57
2036 2072 0.521735 CCCCAACAAGACTAAAGCGC 59.478 55.000 0.00 0.00 0.00 5.92
2064 2100 3.181442 CCAGGAATGATGAGAGCCAATCT 60.181 47.826 0.00 0.00 42.61 2.40
2107 2143 0.106708 GCCGTGCCTGATCCTTGATA 59.893 55.000 0.00 0.00 0.00 2.15
2121 2157 3.895041 TCCTTGATATCCTGTATCACGCA 59.105 43.478 0.00 0.00 34.07 5.24
2122 2158 4.528206 TCCTTGATATCCTGTATCACGCAT 59.472 41.667 0.00 0.00 34.07 4.73
2144 2180 1.153429 GTGGATGGTCGTAGCCCAC 60.153 63.158 0.00 0.00 40.20 4.61
2149 2185 2.365582 GATGGTCGTAGCCCACAAAAT 58.634 47.619 0.00 0.00 0.00 1.82
2162 2198 2.414029 CCACAAAATATGCACGCGTTCT 60.414 45.455 10.22 0.00 0.00 3.01
2232 2269 1.847328 TGAGAGGCCACGTCTATGAA 58.153 50.000 5.01 0.00 0.00 2.57
2233 2270 1.751351 TGAGAGGCCACGTCTATGAAG 59.249 52.381 5.01 0.00 0.00 3.02
2234 2271 2.025155 GAGAGGCCACGTCTATGAAGA 58.975 52.381 5.01 0.00 0.00 2.87
2235 2272 2.028130 AGAGGCCACGTCTATGAAGAG 58.972 52.381 5.01 0.00 30.45 2.85
2236 2273 1.067821 GAGGCCACGTCTATGAAGAGG 59.932 57.143 5.01 0.00 42.20 3.69
2237 2274 0.530870 GGCCACGTCTATGAAGAGGC 60.531 60.000 11.77 11.77 43.79 4.70
2238 2275 0.530870 GCCACGTCTATGAAGAGGCC 60.531 60.000 9.78 0.00 40.39 5.19
2239 2276 0.105039 CCACGTCTATGAAGAGGCCC 59.895 60.000 0.00 0.00 40.55 5.80
2240 2277 0.824109 CACGTCTATGAAGAGGCCCA 59.176 55.000 0.00 0.00 40.55 5.36
2241 2278 0.824759 ACGTCTATGAAGAGGCCCAC 59.175 55.000 0.00 0.00 40.55 4.61
2242 2279 0.105039 CGTCTATGAAGAGGCCCACC 59.895 60.000 0.00 0.00 31.38 4.61
2243 2280 1.204146 GTCTATGAAGAGGCCCACCA 58.796 55.000 0.00 0.00 39.06 4.17
2244 2281 1.134371 GTCTATGAAGAGGCCCACCAC 60.134 57.143 0.00 0.00 39.06 4.16
2245 2282 0.911769 CTATGAAGAGGCCCACCACA 59.088 55.000 0.00 0.00 39.06 4.17
2246 2283 0.618458 TATGAAGAGGCCCACCACAC 59.382 55.000 0.00 0.00 39.06 3.82
2247 2284 2.034221 GAAGAGGCCCACCACACC 59.966 66.667 0.00 0.00 39.06 4.16
2248 2285 3.901797 GAAGAGGCCCACCACACCG 62.902 68.421 0.00 0.00 39.06 4.94
2249 2286 4.954118 AGAGGCCCACCACACCGA 62.954 66.667 0.00 0.00 39.06 4.69
2250 2287 3.948719 GAGGCCCACCACACCGAA 61.949 66.667 0.00 0.00 39.06 4.30
2251 2288 3.485346 GAGGCCCACCACACCGAAA 62.485 63.158 0.00 0.00 39.06 3.46
2252 2289 2.983592 GGCCCACCACACCGAAAG 60.984 66.667 0.00 0.00 35.26 2.62
2253 2290 2.203294 GCCCACCACACCGAAAGT 60.203 61.111 0.00 0.00 0.00 2.66
2254 2291 2.258726 GCCCACCACACCGAAAGTC 61.259 63.158 0.00 0.00 0.00 3.01
2255 2292 1.450211 CCCACCACACCGAAAGTCT 59.550 57.895 0.00 0.00 0.00 3.24
2256 2293 0.602905 CCCACCACACCGAAAGTCTC 60.603 60.000 0.00 0.00 0.00 3.36
2257 2294 0.105964 CCACCACACCGAAAGTCTCA 59.894 55.000 0.00 0.00 0.00 3.27
2258 2295 1.474320 CCACCACACCGAAAGTCTCAA 60.474 52.381 0.00 0.00 0.00 3.02
2259 2296 1.597663 CACCACACCGAAAGTCTCAAC 59.402 52.381 0.00 0.00 0.00 3.18
2260 2297 1.208535 ACCACACCGAAAGTCTCAACA 59.791 47.619 0.00 0.00 0.00 3.33
2261 2298 1.597663 CCACACCGAAAGTCTCAACAC 59.402 52.381 0.00 0.00 0.00 3.32
2262 2299 1.597663 CACACCGAAAGTCTCAACACC 59.402 52.381 0.00 0.00 0.00 4.16
2263 2300 0.859232 CACCGAAAGTCTCAACACCG 59.141 55.000 0.00 0.00 0.00 4.94
2264 2301 0.249741 ACCGAAAGTCTCAACACCGG 60.250 55.000 0.00 0.00 38.76 5.28
2265 2302 0.249741 CCGAAAGTCTCAACACCGGT 60.250 55.000 0.00 0.00 32.70 5.28
2266 2303 1.578583 CGAAAGTCTCAACACCGGTT 58.421 50.000 2.97 0.00 37.87 4.44
2267 2304 1.525619 CGAAAGTCTCAACACCGGTTC 59.474 52.381 2.97 0.00 34.21 3.62
2268 2305 2.802057 CGAAAGTCTCAACACCGGTTCT 60.802 50.000 2.97 0.00 34.21 3.01
2269 2306 3.551454 CGAAAGTCTCAACACCGGTTCTA 60.551 47.826 2.97 0.00 34.21 2.10
2270 2307 3.662247 AAGTCTCAACACCGGTTCTAG 57.338 47.619 2.97 0.00 34.21 2.43
2271 2308 1.893801 AGTCTCAACACCGGTTCTAGG 59.106 52.381 2.97 0.00 34.21 3.02
2272 2309 1.891150 GTCTCAACACCGGTTCTAGGA 59.109 52.381 2.97 0.00 34.21 2.94
2273 2310 2.496470 GTCTCAACACCGGTTCTAGGAT 59.504 50.000 2.97 0.00 34.21 3.24
2274 2311 2.758979 TCTCAACACCGGTTCTAGGATC 59.241 50.000 2.97 0.00 34.21 3.36
2275 2312 1.475280 TCAACACCGGTTCTAGGATCG 59.525 52.381 2.97 0.00 34.21 3.69
2276 2313 1.203994 CAACACCGGTTCTAGGATCGT 59.796 52.381 2.97 0.00 34.21 3.73
2277 2314 2.424601 CAACACCGGTTCTAGGATCGTA 59.575 50.000 2.97 0.00 34.21 3.43
2278 2315 2.019984 ACACCGGTTCTAGGATCGTAC 58.980 52.381 2.97 0.00 0.00 3.67
2279 2316 1.336125 CACCGGTTCTAGGATCGTACC 59.664 57.143 2.97 0.00 0.00 3.34
2281 2318 0.590195 CGGTTCTAGGATCGTACCGG 59.410 60.000 16.78 0.00 45.88 5.28
2282 2319 1.685148 GGTTCTAGGATCGTACCGGT 58.315 55.000 13.98 13.98 34.73 5.28
2283 2320 1.336125 GGTTCTAGGATCGTACCGGTG 59.664 57.143 19.93 0.15 34.73 4.94
2284 2321 1.336125 GTTCTAGGATCGTACCGGTGG 59.664 57.143 19.93 9.49 34.73 4.61
2285 2322 0.839277 TCTAGGATCGTACCGGTGGA 59.161 55.000 19.93 15.25 34.73 4.02
2286 2323 1.202734 TCTAGGATCGTACCGGTGGAG 60.203 57.143 19.93 8.49 34.73 3.86
2287 2324 0.820891 TAGGATCGTACCGGTGGAGC 60.821 60.000 19.93 16.95 34.73 4.70
2288 2325 2.420568 GGATCGTACCGGTGGAGCA 61.421 63.158 19.93 0.00 0.00 4.26
2289 2326 1.065928 GATCGTACCGGTGGAGCAG 59.934 63.158 19.93 1.79 0.00 4.24
2290 2327 2.955751 GATCGTACCGGTGGAGCAGC 62.956 65.000 19.93 2.47 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 76 0.102481 GCCGCGATCTTGTCCTCTAA 59.898 55.000 8.23 0.00 0.00 2.10
92 97 5.012148 GCTTTCCCATATAAGGAGTGAGCTA 59.988 44.000 0.00 0.00 34.98 3.32
105 110 2.101917 GCTGCAACATGCTTTCCCATAT 59.898 45.455 3.78 0.00 45.31 1.78
106 111 1.477700 GCTGCAACATGCTTTCCCATA 59.522 47.619 3.78 0.00 45.31 2.74
437 443 5.333568 GCAAAGATGTTTTGACCATTCTTGC 60.334 40.000 3.97 0.00 35.22 4.01
446 452 2.964768 GTCGACGCAAAGATGTTTTGAC 59.035 45.455 0.00 0.00 0.00 3.18
670 698 2.568623 AACTGAATGTGGGTGAGTCC 57.431 50.000 0.00 0.00 0.00 3.85
747 775 2.187685 CTGTATGCCGAGGCTGCA 59.812 61.111 15.75 1.68 43.97 4.41
1027 1056 2.159379 TCCACTCATCGAGTCGAACATG 60.159 50.000 20.74 13.64 41.37 3.21
1037 1066 1.137675 CCAGAGCAATCCACTCATCGA 59.862 52.381 0.00 0.00 36.58 3.59
1102 1131 1.381928 ATAAGCGGCCTTCTCGACGA 61.382 55.000 0.00 0.00 32.47 4.20
1190 1219 1.156803 AACACTCCCACCGGGACTA 59.843 57.895 6.32 0.00 46.17 2.59
1286 1315 5.372343 AGGCCAGAATATAACACATCACA 57.628 39.130 5.01 0.00 0.00 3.58
1379 1413 6.925165 TCAATTTCTTGTGCCATTTCTTCTTC 59.075 34.615 0.00 0.00 33.87 2.87
1382 1416 6.347160 GCTTCAATTTCTTGTGCCATTTCTTC 60.347 38.462 0.00 0.00 33.87 2.87
1385 1419 4.751098 TGCTTCAATTTCTTGTGCCATTTC 59.249 37.500 0.00 0.00 34.50 2.17
1386 1420 4.706035 TGCTTCAATTTCTTGTGCCATTT 58.294 34.783 0.00 0.00 34.50 2.32
1387 1421 4.339872 TGCTTCAATTTCTTGTGCCATT 57.660 36.364 0.00 0.00 34.50 3.16
1388 1422 4.020928 TCATGCTTCAATTTCTTGTGCCAT 60.021 37.500 0.00 0.00 34.50 4.40
1389 1423 3.321396 TCATGCTTCAATTTCTTGTGCCA 59.679 39.130 0.00 0.00 34.50 4.92
1390 1424 3.916761 TCATGCTTCAATTTCTTGTGCC 58.083 40.909 0.00 0.00 34.50 5.01
1391 1425 5.610982 CGTTTCATGCTTCAATTTCTTGTGC 60.611 40.000 0.00 0.00 35.29 4.57
1403 1437 2.038269 TCCCGGCGTTTCATGCTTC 61.038 57.895 6.01 0.00 0.00 3.86
1449 1483 2.513897 GGGAATCGGCGGGTCTTG 60.514 66.667 7.21 0.00 0.00 3.02
1461 1495 2.381961 ACCCTGTGTTAATGGTGGGAAT 59.618 45.455 11.76 0.00 38.08 3.01
1484 1518 6.415206 TTTGTACTGTAAACTCTGGTAGCT 57.585 37.500 0.00 0.00 0.00 3.32
1485 1519 6.313164 GGATTTGTACTGTAAACTCTGGTAGC 59.687 42.308 0.00 0.00 0.00 3.58
1486 1520 6.817140 GGGATTTGTACTGTAAACTCTGGTAG 59.183 42.308 0.00 0.00 0.00 3.18
1487 1521 6.296030 GGGGATTTGTACTGTAAACTCTGGTA 60.296 42.308 0.00 0.00 0.00 3.25
1488 1522 5.514310 GGGGATTTGTACTGTAAACTCTGGT 60.514 44.000 0.00 0.00 0.00 4.00
1489 1523 4.941873 GGGGATTTGTACTGTAAACTCTGG 59.058 45.833 0.00 0.00 0.00 3.86
1490 1524 5.556915 TGGGGATTTGTACTGTAAACTCTG 58.443 41.667 0.00 0.00 0.00 3.35
1491 1525 5.836024 TGGGGATTTGTACTGTAAACTCT 57.164 39.130 0.00 0.00 0.00 3.24
1492 1526 5.182570 GGTTGGGGATTTGTACTGTAAACTC 59.817 44.000 0.00 0.00 0.00 3.01
1493 1527 5.074804 GGTTGGGGATTTGTACTGTAAACT 58.925 41.667 0.00 0.00 0.00 2.66
1494 1528 4.219070 GGGTTGGGGATTTGTACTGTAAAC 59.781 45.833 0.00 0.00 0.00 2.01
1495 1529 4.140994 TGGGTTGGGGATTTGTACTGTAAA 60.141 41.667 0.00 0.00 0.00 2.01
1496 1530 3.398292 TGGGTTGGGGATTTGTACTGTAA 59.602 43.478 0.00 0.00 0.00 2.41
1497 1531 2.987437 TGGGTTGGGGATTTGTACTGTA 59.013 45.455 0.00 0.00 0.00 2.74
1498 1532 1.783979 TGGGTTGGGGATTTGTACTGT 59.216 47.619 0.00 0.00 0.00 3.55
1499 1533 2.167662 GTGGGTTGGGGATTTGTACTG 58.832 52.381 0.00 0.00 0.00 2.74
1500 1534 1.076513 GGTGGGTTGGGGATTTGTACT 59.923 52.381 0.00 0.00 0.00 2.73
1501 1535 1.203075 TGGTGGGTTGGGGATTTGTAC 60.203 52.381 0.00 0.00 0.00 2.90
1502 1536 1.076350 CTGGTGGGTTGGGGATTTGTA 59.924 52.381 0.00 0.00 0.00 2.41
1503 1537 0.178935 CTGGTGGGTTGGGGATTTGT 60.179 55.000 0.00 0.00 0.00 2.83
1504 1538 0.114168 TCTGGTGGGTTGGGGATTTG 59.886 55.000 0.00 0.00 0.00 2.32
1505 1539 0.409484 CTCTGGTGGGTTGGGGATTT 59.591 55.000 0.00 0.00 0.00 2.17
1506 1540 0.776080 ACTCTGGTGGGTTGGGGATT 60.776 55.000 0.00 0.00 0.00 3.01
1507 1541 0.776080 AACTCTGGTGGGTTGGGGAT 60.776 55.000 0.00 0.00 0.00 3.85
1508 1542 1.386772 AACTCTGGTGGGTTGGGGA 60.387 57.895 0.00 0.00 0.00 4.81
1509 1543 1.074951 GAACTCTGGTGGGTTGGGG 59.925 63.158 0.00 0.00 0.00 4.96
1510 1544 0.184933 TTGAACTCTGGTGGGTTGGG 59.815 55.000 0.00 0.00 0.00 4.12
1511 1545 2.065899 TTTGAACTCTGGTGGGTTGG 57.934 50.000 0.00 0.00 0.00 3.77
1512 1546 2.558359 GGATTTGAACTCTGGTGGGTTG 59.442 50.000 0.00 0.00 0.00 3.77
1513 1547 2.447047 AGGATTTGAACTCTGGTGGGTT 59.553 45.455 0.00 0.00 0.00 4.11
1514 1548 2.065799 AGGATTTGAACTCTGGTGGGT 58.934 47.619 0.00 0.00 0.00 4.51
1515 1549 2.040278 TCAGGATTTGAACTCTGGTGGG 59.960 50.000 0.00 0.00 31.34 4.61
1516 1550 3.423539 TCAGGATTTGAACTCTGGTGG 57.576 47.619 0.00 0.00 31.34 4.61
1517 1551 3.128242 GCATCAGGATTTGAACTCTGGTG 59.872 47.826 0.00 0.00 39.77 4.17
1518 1552 3.009916 AGCATCAGGATTTGAACTCTGGT 59.990 43.478 0.00 0.00 39.77 4.00
1519 1553 3.618351 AGCATCAGGATTTGAACTCTGG 58.382 45.455 0.00 0.00 39.77 3.86
1520 1554 3.309138 CGAGCATCAGGATTTGAACTCTG 59.691 47.826 0.00 0.00 39.30 3.35
1521 1555 3.529533 CGAGCATCAGGATTTGAACTCT 58.470 45.455 0.00 0.00 39.30 3.24
1522 1556 2.031437 GCGAGCATCAGGATTTGAACTC 59.969 50.000 0.00 0.00 39.77 3.01
1523 1557 2.012673 GCGAGCATCAGGATTTGAACT 58.987 47.619 0.00 0.00 39.77 3.01
1524 1558 1.739466 TGCGAGCATCAGGATTTGAAC 59.261 47.619 0.00 0.00 39.77 3.18
1525 1559 2.112380 TGCGAGCATCAGGATTTGAA 57.888 45.000 0.00 0.00 39.77 2.69
1526 1560 2.336945 ATGCGAGCATCAGGATTTGA 57.663 45.000 4.52 0.00 40.85 2.69
1527 1561 4.761235 ATAATGCGAGCATCAGGATTTG 57.239 40.909 11.26 0.00 35.31 2.32
1528 1562 5.533903 AGAAATAATGCGAGCATCAGGATTT 59.466 36.000 11.26 13.27 35.31 2.17
1529 1563 5.048921 CAGAAATAATGCGAGCATCAGGATT 60.049 40.000 11.26 6.38 35.31 3.01
1530 1564 4.454847 CAGAAATAATGCGAGCATCAGGAT 59.545 41.667 11.26 0.00 35.31 3.24
1531 1565 3.811497 CAGAAATAATGCGAGCATCAGGA 59.189 43.478 11.26 0.00 35.31 3.86
1532 1566 3.058432 CCAGAAATAATGCGAGCATCAGG 60.058 47.826 11.26 2.17 35.31 3.86
1533 1567 3.811497 TCCAGAAATAATGCGAGCATCAG 59.189 43.478 11.26 0.00 35.31 2.90
1534 1568 3.807553 TCCAGAAATAATGCGAGCATCA 58.192 40.909 11.26 0.00 35.31 3.07
1535 1569 5.368256 AATCCAGAAATAATGCGAGCATC 57.632 39.130 11.26 0.00 35.31 3.91
1536 1570 5.779529 AAATCCAGAAATAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
1537 1571 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
1538 1572 7.862372 TGAAATAAATCCAGAAATAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
1539 1573 9.390795 CTGAAATAAATCCAGAAATAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
1540 1574 8.352201 CCTGAAATAAATCCAGAAATAATGCGA 58.648 33.333 0.00 0.00 0.00 5.10
1541 1575 8.352201 TCCTGAAATAAATCCAGAAATAATGCG 58.648 33.333 0.00 0.00 0.00 4.73
1547 1581 8.416329 CGGAAATCCTGAAATAAATCCAGAAAT 58.584 33.333 0.00 0.00 0.00 2.17
1548 1582 7.147915 CCGGAAATCCTGAAATAAATCCAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
1549 1583 6.321181 CCGGAAATCCTGAAATAAATCCAGAA 59.679 38.462 0.00 0.00 0.00 3.02
1550 1584 5.827797 CCGGAAATCCTGAAATAAATCCAGA 59.172 40.000 0.00 0.00 0.00 3.86
1551 1585 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
1552 1586 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
1553 1587 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
1554 1588 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
1555 1589 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
1556 1590 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
1557 1591 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
1558 1592 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
1559 1593 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
1560 1594 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
1561 1595 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
1562 1596 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
1563 1597 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
1564 1598 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
1575 1609 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
1576 1610 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
1577 1611 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
1578 1612 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
1579 1613 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
1580 1614 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
1581 1615 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
1582 1616 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
1583 1617 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
1584 1618 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
1585 1619 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
1586 1620 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
1587 1621 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
1607 1641 2.125952 TAGTCGCCTCGTCGTCGA 60.126 61.111 4.42 4.42 44.12 4.20
1608 1642 2.021106 GTAGTCGCCTCGTCGTCG 59.979 66.667 0.00 0.00 38.55 5.12
1609 1643 2.021106 CGTAGTCGCCTCGTCGTC 59.979 66.667 0.00 0.00 0.00 4.20
1610 1644 3.494336 CCGTAGTCGCCTCGTCGT 61.494 66.667 0.00 0.00 35.54 4.34
1611 1645 3.494336 ACCGTAGTCGCCTCGTCG 61.494 66.667 0.00 0.00 35.54 5.12
1612 1646 2.099831 CACCGTAGTCGCCTCGTC 59.900 66.667 0.00 0.00 35.54 4.20
1613 1647 2.359107 TCACCGTAGTCGCCTCGT 60.359 61.111 0.00 0.00 35.54 4.18
1614 1648 1.919956 AAGTCACCGTAGTCGCCTCG 61.920 60.000 0.00 0.00 35.54 4.63
1615 1649 0.243095 AAAGTCACCGTAGTCGCCTC 59.757 55.000 0.00 0.00 35.54 4.70
1616 1650 0.038526 CAAAGTCACCGTAGTCGCCT 60.039 55.000 0.00 0.00 35.54 5.52
1617 1651 0.319297 ACAAAGTCACCGTAGTCGCC 60.319 55.000 0.00 0.00 35.54 5.54
1618 1652 2.336554 TACAAAGTCACCGTAGTCGC 57.663 50.000 0.00 0.00 35.54 5.19
1619 1653 5.159209 AGATTTACAAAGTCACCGTAGTCG 58.841 41.667 0.00 0.00 0.00 4.18
1620 1654 6.154445 TGAGATTTACAAAGTCACCGTAGTC 58.846 40.000 0.00 0.00 0.00 2.59
1621 1655 6.092955 TGAGATTTACAAAGTCACCGTAGT 57.907 37.500 0.00 0.00 0.00 2.73
1622 1656 6.866770 TCTTGAGATTTACAAAGTCACCGTAG 59.133 38.462 0.00 0.00 0.00 3.51
1623 1657 6.751157 TCTTGAGATTTACAAAGTCACCGTA 58.249 36.000 0.00 0.00 0.00 4.02
1624 1658 5.607477 TCTTGAGATTTACAAAGTCACCGT 58.393 37.500 0.00 0.00 0.00 4.83
1625 1659 6.368791 TCATCTTGAGATTTACAAAGTCACCG 59.631 38.462 0.00 0.00 31.21 4.94
1626 1660 7.672983 TCATCTTGAGATTTACAAAGTCACC 57.327 36.000 0.00 0.00 31.21 4.02
1629 1663 9.875675 GCATATCATCTTGAGATTTACAAAGTC 57.124 33.333 0.00 0.00 31.21 3.01
1630 1664 8.844244 GGCATATCATCTTGAGATTTACAAAGT 58.156 33.333 0.00 0.00 31.21 2.66
1631 1665 8.013947 CGGCATATCATCTTGAGATTTACAAAG 58.986 37.037 0.00 0.00 31.21 2.77
1632 1666 7.041167 CCGGCATATCATCTTGAGATTTACAAA 60.041 37.037 0.00 0.00 31.21 2.83
1633 1667 6.427853 CCGGCATATCATCTTGAGATTTACAA 59.572 38.462 0.00 0.00 31.21 2.41
1634 1668 5.934043 CCGGCATATCATCTTGAGATTTACA 59.066 40.000 0.00 0.00 31.21 2.41
1635 1669 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
1636 1670 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
1637 1671 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
1638 1672 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
1639 1673 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
1640 1674 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
1641 1675 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
1642 1676 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
1643 1677 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
1644 1678 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
1645 1679 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
1646 1680 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
1647 1681 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
1648 1682 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
1649 1683 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
1650 1684 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
1651 1685 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
1652 1686 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
1653 1687 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
1654 1688 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
1655 1689 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
1656 1690 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
1657 1691 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
1658 1692 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
1659 1693 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
1660 1694 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
1661 1695 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
1662 1696 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
1663 1697 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
1664 1698 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
1665 1699 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
1666 1700 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
1667 1701 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
1668 1702 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
1669 1703 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
1670 1704 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
1671 1705 1.133136 TCCTACCCCTATGAGCACCTC 60.133 57.143 0.00 0.00 0.00 3.85
1672 1706 0.941963 TCCTACCCCTATGAGCACCT 59.058 55.000 0.00 0.00 0.00 4.00
1673 1707 1.625818 CATCCTACCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
1674 1708 2.037772 CACATCCTACCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
1675 1709 2.329267 CACATCCTACCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
1676 1710 1.002544 GCACATCCTACCCCTATGAGC 59.997 57.143 0.00 0.00 31.75 4.26
1677 1711 1.273606 CGCACATCCTACCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
1678 1712 1.338107 CGCACATCCTACCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
1679 1713 1.048601 ACGCACATCCTACCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
1680 1714 1.048601 CACGCACATCCTACCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
1681 1715 0.324923 ACACGCACATCCTACCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
1682 1716 1.612442 ACACGCACATCCTACCCCT 60.612 57.895 0.00 0.00 0.00 4.79
1683 1717 1.449601 CACACGCACATCCTACCCC 60.450 63.158 0.00 0.00 0.00 4.95
1684 1718 1.019278 CACACACGCACATCCTACCC 61.019 60.000 0.00 0.00 0.00 3.69
1685 1719 1.635663 GCACACACGCACATCCTACC 61.636 60.000 0.00 0.00 0.00 3.18
1686 1720 1.787847 GCACACACGCACATCCTAC 59.212 57.895 0.00 0.00 0.00 3.18
1687 1721 1.736282 CGCACACACGCACATCCTA 60.736 57.895 0.00 0.00 0.00 2.94
1688 1722 3.043713 CGCACACACGCACATCCT 61.044 61.111 0.00 0.00 0.00 3.24
1689 1723 2.764251 GAACGCACACACGCACATCC 62.764 60.000 0.00 0.00 36.19 3.51
1690 1724 1.438710 GAACGCACACACGCACATC 60.439 57.895 0.00 0.00 36.19 3.06
1691 1725 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
1692 1726 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
1693 1727 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
1694 1728 0.319125 TCTATGAACGCACACACGCA 60.319 50.000 0.00 0.00 36.19 5.24
1695 1729 0.366871 CTCTATGAACGCACACACGC 59.633 55.000 0.00 0.00 36.19 5.34
1696 1730 1.977188 TCTCTATGAACGCACACACG 58.023 50.000 0.00 0.00 39.50 4.49
1697 1731 3.511699 TCATCTCTATGAACGCACACAC 58.488 45.455 0.00 0.00 39.20 3.82
1698 1732 3.193479 ACTCATCTCTATGAACGCACACA 59.807 43.478 0.00 0.00 41.57 3.72
1699 1733 3.549471 CACTCATCTCTATGAACGCACAC 59.451 47.826 0.00 0.00 41.57 3.82
1700 1734 3.193479 ACACTCATCTCTATGAACGCACA 59.807 43.478 0.00 0.00 41.57 4.57
1701 1735 3.775202 ACACTCATCTCTATGAACGCAC 58.225 45.455 0.00 0.00 41.57 5.34
1702 1736 5.523369 CATACACTCATCTCTATGAACGCA 58.477 41.667 0.00 0.00 41.57 5.24
1703 1737 4.384247 GCATACACTCATCTCTATGAACGC 59.616 45.833 0.00 0.00 41.57 4.84
1704 1738 4.614702 CGCATACACTCATCTCTATGAACG 59.385 45.833 0.00 0.00 41.57 3.95
1705 1739 4.384247 GCGCATACACTCATCTCTATGAAC 59.616 45.833 0.30 0.00 41.57 3.18
1706 1740 4.550422 GCGCATACACTCATCTCTATGAA 58.450 43.478 0.30 0.00 41.57 2.57
1707 1741 3.365364 CGCGCATACACTCATCTCTATGA 60.365 47.826 8.75 0.00 39.87 2.15
1708 1742 2.913590 CGCGCATACACTCATCTCTATG 59.086 50.000 8.75 0.00 0.00 2.23
1709 1743 2.554462 ACGCGCATACACTCATCTCTAT 59.446 45.455 5.73 0.00 0.00 1.98
1710 1744 1.947456 ACGCGCATACACTCATCTCTA 59.053 47.619 5.73 0.00 0.00 2.43
1711 1745 0.741326 ACGCGCATACACTCATCTCT 59.259 50.000 5.73 0.00 0.00 3.10
1712 1746 0.848942 CACGCGCATACACTCATCTC 59.151 55.000 5.73 0.00 0.00 2.75
1713 1747 0.173481 ACACGCGCATACACTCATCT 59.827 50.000 5.73 0.00 0.00 2.90
1714 1748 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
1715 1749 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
1716 1750 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
1717 1751 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
1718 1752 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
1719 1753 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
1720 1754 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
1721 1755 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
1722 1756 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
1723 1757 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
1724 1758 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
1728 1762 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
1729 1763 3.448686 AGACACAAGCGCTCATATACAC 58.551 45.455 12.06 0.00 0.00 2.90
1730 1764 3.801114 AGACACAAGCGCTCATATACA 57.199 42.857 12.06 0.00 0.00 2.29
1731 1765 6.524933 CAGTATAGACACAAGCGCTCATATAC 59.475 42.308 12.06 15.71 0.00 1.47
1732 1766 6.430000 TCAGTATAGACACAAGCGCTCATATA 59.570 38.462 12.06 4.88 0.00 0.86
1733 1767 5.241728 TCAGTATAGACACAAGCGCTCATAT 59.758 40.000 12.06 5.85 0.00 1.78
1734 1768 4.578928 TCAGTATAGACACAAGCGCTCATA 59.421 41.667 12.06 0.00 0.00 2.15
1735 1769 3.381590 TCAGTATAGACACAAGCGCTCAT 59.618 43.478 12.06 0.00 0.00 2.90
1736 1770 2.752903 TCAGTATAGACACAAGCGCTCA 59.247 45.455 12.06 0.00 0.00 4.26
1737 1771 3.422417 TCAGTATAGACACAAGCGCTC 57.578 47.619 12.06 0.00 0.00 5.03
1738 1772 3.711086 CATCAGTATAGACACAAGCGCT 58.289 45.455 2.64 2.64 0.00 5.92
1739 1773 2.219674 GCATCAGTATAGACACAAGCGC 59.780 50.000 0.00 0.00 0.00 5.92
1740 1774 3.711086 AGCATCAGTATAGACACAAGCG 58.289 45.455 0.00 0.00 0.00 4.68
1741 1775 7.539712 TTTTAGCATCAGTATAGACACAAGC 57.460 36.000 0.00 0.00 0.00 4.01
1764 1798 2.218603 CGTAGCTGACCCTGTGTTTTT 58.781 47.619 0.00 0.00 0.00 1.94
1765 1799 1.878953 CGTAGCTGACCCTGTGTTTT 58.121 50.000 0.00 0.00 0.00 2.43
1766 1800 3.606886 CGTAGCTGACCCTGTGTTT 57.393 52.632 0.00 0.00 0.00 2.83
1780 1814 0.389391 ACTCCATGAATCCCGCGTAG 59.611 55.000 4.92 0.00 0.00 3.51
1795 1829 1.673665 CTCCCAAGCACTGCACTCC 60.674 63.158 3.30 0.00 0.00 3.85
1807 1841 1.911766 GTCTGTCCCCGACTCCCAA 60.912 63.158 0.00 0.00 33.15 4.12
1809 1843 2.037527 AGTCTGTCCCCGACTCCC 59.962 66.667 0.00 0.00 37.13 4.30
1827 1861 7.486802 TTGATTAGTGTCATATGCATCACAG 57.513 36.000 16.06 1.11 33.84 3.66
1922 1957 9.232082 CGTTTTTGTATTCATTCAACTTCTTCA 57.768 29.630 0.00 0.00 0.00 3.02
2036 2072 1.482182 TCTCATCATTCCTGGGACGTG 59.518 52.381 0.00 0.00 0.00 4.49
2073 2109 1.041437 ACGGCTATAGGTGAAGGCTC 58.959 55.000 1.04 0.00 36.21 4.70
2084 2120 1.344438 CAAGGATCAGGCACGGCTATA 59.656 52.381 0.00 0.00 0.00 1.31
2107 2143 0.601046 CGGCATGCGTGATACAGGAT 60.601 55.000 12.44 0.00 0.00 3.24
2121 2157 1.441729 CTACGACCATCCACGGCAT 59.558 57.895 0.00 0.00 0.00 4.40
2122 2158 2.889617 CTACGACCATCCACGGCA 59.110 61.111 0.00 0.00 0.00 5.69
2134 2170 2.680841 GTGCATATTTTGTGGGCTACGA 59.319 45.455 0.00 0.00 0.00 3.43
2144 2180 2.176369 CCAGAACGCGTGCATATTTTG 58.824 47.619 21.64 7.50 0.00 2.44
2149 2185 1.739929 CCACCAGAACGCGTGCATA 60.740 57.895 21.64 0.00 0.00 3.14
2204 2240 0.396060 GTGGCCTCTCATCCCTCATC 59.604 60.000 3.32 0.00 0.00 2.92
2232 2269 4.954118 TCGGTGTGGTGGGCCTCT 62.954 66.667 4.53 0.00 35.27 3.69
2233 2270 3.485346 TTTCGGTGTGGTGGGCCTC 62.485 63.158 4.53 0.00 35.27 4.70
2234 2271 3.491598 CTTTCGGTGTGGTGGGCCT 62.492 63.158 4.53 0.00 35.27 5.19
2235 2272 2.983592 CTTTCGGTGTGGTGGGCC 60.984 66.667 0.00 0.00 0.00 5.80
2236 2273 2.203294 ACTTTCGGTGTGGTGGGC 60.203 61.111 0.00 0.00 0.00 5.36
2237 2274 0.602905 GAGACTTTCGGTGTGGTGGG 60.603 60.000 0.00 0.00 0.00 4.61
2238 2275 0.105964 TGAGACTTTCGGTGTGGTGG 59.894 55.000 0.00 0.00 0.00 4.61
2239 2276 1.597663 GTTGAGACTTTCGGTGTGGTG 59.402 52.381 0.00 0.00 0.00 4.17
2240 2277 1.208535 TGTTGAGACTTTCGGTGTGGT 59.791 47.619 0.00 0.00 0.00 4.16
2241 2278 1.597663 GTGTTGAGACTTTCGGTGTGG 59.402 52.381 0.00 0.00 0.00 4.17
2242 2279 1.597663 GGTGTTGAGACTTTCGGTGTG 59.402 52.381 0.00 0.00 0.00 3.82
2243 2280 1.805120 CGGTGTTGAGACTTTCGGTGT 60.805 52.381 0.00 0.00 0.00 4.16
2244 2281 0.859232 CGGTGTTGAGACTTTCGGTG 59.141 55.000 0.00 0.00 0.00 4.94
2245 2282 0.249741 CCGGTGTTGAGACTTTCGGT 60.250 55.000 0.00 0.00 32.73 4.69
2246 2283 0.249741 ACCGGTGTTGAGACTTTCGG 60.250 55.000 6.12 0.00 38.36 4.30
2247 2284 1.525619 GAACCGGTGTTGAGACTTTCG 59.474 52.381 8.52 0.00 33.97 3.46
2248 2285 2.835027 AGAACCGGTGTTGAGACTTTC 58.165 47.619 8.52 0.00 33.97 2.62
2249 2286 3.244112 CCTAGAACCGGTGTTGAGACTTT 60.244 47.826 8.52 0.00 33.97 2.66
2250 2287 2.299297 CCTAGAACCGGTGTTGAGACTT 59.701 50.000 8.52 0.00 33.97 3.01
2251 2288 1.893801 CCTAGAACCGGTGTTGAGACT 59.106 52.381 8.52 2.07 33.97 3.24
2252 2289 1.891150 TCCTAGAACCGGTGTTGAGAC 59.109 52.381 8.52 0.00 33.97 3.36
2253 2290 2.297698 TCCTAGAACCGGTGTTGAGA 57.702 50.000 8.52 0.00 33.97 3.27
2254 2291 2.479730 CGATCCTAGAACCGGTGTTGAG 60.480 54.545 8.52 3.20 33.97 3.02
2255 2292 1.475280 CGATCCTAGAACCGGTGTTGA 59.525 52.381 8.52 0.83 33.97 3.18
2256 2293 1.203994 ACGATCCTAGAACCGGTGTTG 59.796 52.381 8.52 0.00 33.97 3.33
2257 2294 1.553706 ACGATCCTAGAACCGGTGTT 58.446 50.000 8.52 1.17 37.42 3.32
2258 2295 2.019984 GTACGATCCTAGAACCGGTGT 58.980 52.381 8.52 0.11 0.00 4.16
2259 2296 1.336125 GGTACGATCCTAGAACCGGTG 59.664 57.143 8.52 0.00 0.00 4.94
2260 2297 1.685148 GGTACGATCCTAGAACCGGT 58.315 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.