Multiple sequence alignment - TraesCS5B01G108900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G108900 chr5B 100.000 3387 0 0 1 3387 149332191 149328805 0.000000e+00 6255.0
1 TraesCS5B01G108900 chr5D 91.829 2570 101 31 620 3145 136349389 136351893 0.000000e+00 3482.0
2 TraesCS5B01G108900 chr5D 91.437 327 11 2 305 619 136349016 136349337 1.870000e-117 433.0
3 TraesCS5B01G108900 chr5D 94.215 242 9 2 39 277 136346606 136346845 6.910000e-97 364.0
4 TraesCS5B01G108900 chr5D 77.328 247 40 13 3145 3387 503646821 503646587 7.630000e-27 132.0
5 TraesCS5B01G108900 chr5A 85.705 1490 101 33 1022 2445 168864959 168863516 0.000000e+00 1469.0
6 TraesCS5B01G108900 chr5A 93.698 603 27 5 2554 3146 168849254 168848653 0.000000e+00 893.0
7 TraesCS5B01G108900 chr5A 91.139 395 13 3 340 714 168865648 168865256 1.800000e-142 516.0
8 TraesCS5B01G108900 chr5A 84.502 271 23 12 698 962 168865239 168864982 2.020000e-62 250.0
9 TraesCS5B01G108900 chr2B 82.520 246 35 6 3143 3385 442328493 442328253 3.420000e-50 209.0
10 TraesCS5B01G108900 chr2D 81.557 244 41 4 3143 3385 372800893 372800653 7.410000e-47 198.0
11 TraesCS5B01G108900 chr3D 81.452 248 37 7 3145 3387 89926373 89926130 9.590000e-46 195.0
12 TraesCS5B01G108900 chr1D 79.339 242 41 6 3143 3382 370907472 370907238 9.730000e-36 161.0
13 TraesCS5B01G108900 chr1D 93.182 44 3 0 3143 3186 250606835 250606792 7.840000e-07 65.8
14 TraesCS5B01G108900 chr3B 78.652 267 30 12 3143 3385 700928657 700928394 5.850000e-33 152.0
15 TraesCS5B01G108900 chr4A 78.481 237 38 9 3147 3380 649426422 649426196 3.520000e-30 143.0
16 TraesCS5B01G108900 chr2A 80.402 199 30 7 3143 3338 504556704 504556896 3.520000e-30 143.0
17 TraesCS5B01G108900 chr7A 77.966 236 42 7 3147 3380 41870730 41870503 4.560000e-29 139.0
18 TraesCS5B01G108900 chr1B 80.488 123 21 3 3180 3301 610024686 610024566 1.290000e-14 91.6
19 TraesCS5B01G108900 chr3A 73.494 249 50 13 3145 3387 129980463 129980225 2.800000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G108900 chr5B 149328805 149332191 3386 True 6255.000000 6255 100.000000 1 3387 1 chr5B.!!$R1 3386
1 TraesCS5B01G108900 chr5D 136346606 136351893 5287 False 1426.333333 3482 92.493667 39 3145 3 chr5D.!!$F1 3106
2 TraesCS5B01G108900 chr5A 168848653 168849254 601 True 893.000000 893 93.698000 2554 3146 1 chr5A.!!$R1 592
3 TraesCS5B01G108900 chr5A 168863516 168865648 2132 True 745.000000 1469 87.115333 340 2445 3 chr5A.!!$R2 2105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 3152 0.107017 TCTGGCCCTAATCAAGCAGC 60.107 55.0 0.0 0.0 0.00 5.25 F
1804 4107 0.256752 CAATGAGACCCATCCTGGCA 59.743 55.0 0.0 0.0 35.79 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 4365 0.032403 GCACAATGAAGCCTGTTGCA 59.968 50.0 0.00 0.0 44.83 4.08 R
3209 5567 0.039617 CGCAATTTTTGAGACGGCCA 60.040 50.0 2.24 0.0 31.66 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.185394 TGCACAATAACGGTACATACAGG 58.815 43.478 0.00 0.00 0.00 4.00
23 24 4.186159 GCACAATAACGGTACATACAGGT 58.814 43.478 0.00 0.00 0.00 4.00
24 25 4.632688 GCACAATAACGGTACATACAGGTT 59.367 41.667 0.00 4.01 0.00 3.50
25 26 5.811613 GCACAATAACGGTACATACAGGTTA 59.188 40.000 0.00 7.14 0.00 2.85
26 27 6.237915 GCACAATAACGGTACATACAGGTTAC 60.238 42.308 0.00 0.00 0.00 2.50
27 28 6.812656 CACAATAACGGTACATACAGGTTACA 59.187 38.462 0.00 0.00 0.00 2.41
28 29 7.493320 CACAATAACGGTACATACAGGTTACAT 59.507 37.037 0.00 0.00 0.00 2.29
29 30 8.694540 ACAATAACGGTACATACAGGTTACATA 58.305 33.333 0.00 0.00 0.00 2.29
30 31 8.971321 CAATAACGGTACATACAGGTTACATAC 58.029 37.037 0.00 0.00 0.00 2.39
31 32 6.528537 AACGGTACATACAGGTTACATACA 57.471 37.500 0.00 0.00 0.00 2.29
32 33 6.528537 ACGGTACATACAGGTTACATACAA 57.471 37.500 0.00 0.00 0.00 2.41
33 34 7.116075 ACGGTACATACAGGTTACATACAAT 57.884 36.000 0.00 0.00 0.00 2.71
34 35 7.558604 ACGGTACATACAGGTTACATACAATT 58.441 34.615 0.00 0.00 0.00 2.32
35 36 7.707893 ACGGTACATACAGGTTACATACAATTC 59.292 37.037 0.00 0.00 0.00 2.17
36 37 7.707464 CGGTACATACAGGTTACATACAATTCA 59.293 37.037 0.00 0.00 0.00 2.57
37 38 9.386010 GGTACATACAGGTTACATACAATTCAA 57.614 33.333 0.00 0.00 0.00 2.69
42 43 6.677913 ACAGGTTACATACAATTCAACAAGC 58.322 36.000 0.00 0.00 0.00 4.01
159 160 4.201920 TGGAATCGACTATGAGTTCACGAG 60.202 45.833 0.00 0.00 28.02 4.18
162 163 6.432607 AATCGACTATGAGTTCACGAGTTA 57.567 37.500 0.00 0.00 28.02 2.24
202 206 0.459237 GTGCATCCGTGACTGAGAGG 60.459 60.000 0.00 0.00 0.00 3.69
210 214 2.289072 CCGTGACTGAGAGGTTTGACAT 60.289 50.000 0.00 0.00 0.00 3.06
221 225 5.701224 AGAGGTTTGACATTCCCTTTTGTA 58.299 37.500 0.00 0.00 0.00 2.41
277 281 4.038642 TCTTGTTAAAACCCTTGGCATGAC 59.961 41.667 0.00 0.00 0.00 3.06
278 282 3.571590 TGTTAAAACCCTTGGCATGACT 58.428 40.909 0.00 0.00 0.00 3.41
279 283 3.964031 TGTTAAAACCCTTGGCATGACTT 59.036 39.130 0.00 0.00 0.00 3.01
280 284 4.038642 TGTTAAAACCCTTGGCATGACTTC 59.961 41.667 0.00 0.00 0.00 3.01
282 1706 1.244019 AACCCTTGGCATGACTTCGC 61.244 55.000 0.00 0.00 0.00 4.70
284 1708 1.243342 CCCTTGGCATGACTTCGCAA 61.243 55.000 0.00 0.00 0.00 4.85
287 1711 2.545532 CCTTGGCATGACTTCGCAAAAA 60.546 45.455 0.00 0.00 0.00 1.94
392 2539 1.507140 AGTCAGAACAGAACCCACCA 58.493 50.000 0.00 0.00 0.00 4.17
468 2615 3.539593 TTGACCGCCTCCTCCCTCA 62.540 63.158 0.00 0.00 0.00 3.86
571 2734 5.448225 CGACACCATCAATTCATCTCCTTTG 60.448 44.000 0.00 0.00 0.00 2.77
631 2845 2.891580 CCTACATATACGCCTCACTGGT 59.108 50.000 0.00 0.00 38.35 4.00
710 2950 3.262151 ACAGCCTACCTTCTTCTTCTTCC 59.738 47.826 0.00 0.00 0.00 3.46
714 2954 4.957327 GCCTACCTTCTTCTTCTTCCTCTA 59.043 45.833 0.00 0.00 0.00 2.43
715 2955 5.068591 GCCTACCTTCTTCTTCTTCCTCTAG 59.931 48.000 0.00 0.00 0.00 2.43
726 2974 5.723887 TCTTCTTCCTCTAGAGCAGGATTTT 59.276 40.000 14.73 0.00 39.91 1.82
727 2975 5.350504 TCTTCCTCTAGAGCAGGATTTTG 57.649 43.478 14.73 0.00 39.91 2.44
728 2976 3.550437 TCCTCTAGAGCAGGATTTTGC 57.450 47.619 14.73 0.00 44.41 3.68
753 3001 6.763355 TGCTATTTATTTTTGGCTTTGGTCA 58.237 32.000 0.00 0.00 0.00 4.02
757 3005 7.728847 ATTTATTTTTGGCTTTGGTCAAGAC 57.271 32.000 0.00 0.00 41.69 3.01
764 3012 1.401539 GCTTTGGTCAAGACGAATGGC 60.402 52.381 10.99 9.10 33.80 4.40
822 3070 3.701205 TGCTGTCCTCTGCTTGATTTA 57.299 42.857 0.00 0.00 38.91 1.40
826 3074 4.213059 GCTGTCCTCTGCTTGATTTATAGC 59.787 45.833 0.00 0.00 37.89 2.97
829 3080 6.418101 TGTCCTCTGCTTGATTTATAGCTTT 58.582 36.000 0.00 0.00 38.22 3.51
851 3102 4.741321 TTTCGGTTACTAGTACATGGGG 57.259 45.455 0.91 0.00 0.00 4.96
852 3103 3.668141 TCGGTTACTAGTACATGGGGA 57.332 47.619 0.91 0.00 0.00 4.81
898 3152 0.107017 TCTGGCCCTAATCAAGCAGC 60.107 55.000 0.00 0.00 0.00 5.25
928 3182 4.994217 TGTATTTTCTCATCAACTGCGTCA 59.006 37.500 0.00 0.00 0.00 4.35
989 3243 9.524496 TCTACCTAATACTAACACTCTGTTTCA 57.476 33.333 0.00 0.00 41.45 2.69
990 3244 9.790389 CTACCTAATACTAACACTCTGTTTCAG 57.210 37.037 0.00 0.00 41.45 3.02
991 3245 8.418597 ACCTAATACTAACACTCTGTTTCAGA 57.581 34.615 0.00 0.00 41.45 3.27
992 3246 9.036980 ACCTAATACTAACACTCTGTTTCAGAT 57.963 33.333 0.00 0.00 41.45 2.90
993 3247 9.877178 CCTAATACTAACACTCTGTTTCAGATT 57.123 33.333 0.00 0.00 41.45 2.40
998 3252 7.379750 ACTAACACTCTGTTTCAGATTCTACC 58.620 38.462 0.00 0.00 41.45 3.18
999 3253 4.810790 ACACTCTGTTTCAGATTCTACCG 58.189 43.478 0.00 0.00 39.92 4.02
1000 3254 4.523173 ACACTCTGTTTCAGATTCTACCGA 59.477 41.667 0.00 0.00 39.92 4.69
1001 3255 5.010719 ACACTCTGTTTCAGATTCTACCGAA 59.989 40.000 0.00 0.00 39.92 4.30
1002 3256 6.102663 CACTCTGTTTCAGATTCTACCGAAT 58.897 40.000 0.00 0.00 39.92 3.34
1003 3257 6.591834 CACTCTGTTTCAGATTCTACCGAATT 59.408 38.462 0.00 0.00 39.92 2.17
1004 3258 6.814146 ACTCTGTTTCAGATTCTACCGAATTC 59.186 38.462 0.00 0.00 39.92 2.17
1005 3259 5.805486 TCTGTTTCAGATTCTACCGAATTCG 59.195 40.000 20.92 20.92 39.89 3.34
1006 3260 5.716094 TGTTTCAGATTCTACCGAATTCGA 58.284 37.500 28.76 9.08 39.89 3.71
1007 3261 5.805486 TGTTTCAGATTCTACCGAATTCGAG 59.195 40.000 28.76 18.50 39.89 4.04
1008 3262 5.578005 TTCAGATTCTACCGAATTCGAGT 57.422 39.130 28.76 23.90 39.89 4.18
1009 3263 5.578005 TCAGATTCTACCGAATTCGAGTT 57.422 39.130 28.76 14.50 39.89 3.01
1010 3264 5.962433 TCAGATTCTACCGAATTCGAGTTT 58.038 37.500 28.76 12.11 39.89 2.66
1011 3265 6.034591 TCAGATTCTACCGAATTCGAGTTTC 58.965 40.000 28.76 17.38 39.89 2.78
1012 3266 5.805486 CAGATTCTACCGAATTCGAGTTTCA 59.195 40.000 28.76 8.54 39.89 2.69
1013 3267 6.310467 CAGATTCTACCGAATTCGAGTTTCAA 59.690 38.462 28.76 15.90 39.89 2.69
1014 3268 6.872020 AGATTCTACCGAATTCGAGTTTCAAA 59.128 34.615 28.76 12.94 39.89 2.69
1015 3269 6.847956 TTCTACCGAATTCGAGTTTCAAAA 57.152 33.333 28.76 8.92 43.02 2.44
1016 3270 6.847956 TCTACCGAATTCGAGTTTCAAAAA 57.152 33.333 28.76 7.38 43.02 1.94
1094 3352 2.203252 CACCGATGGAGGCCATGG 60.203 66.667 7.63 7.63 45.26 3.66
1246 3507 1.712977 GGAAGAAGCAGCAGCCATCG 61.713 60.000 0.00 0.00 43.56 3.84
1266 3533 1.079503 GCTTCCGATGACCACAAGAC 58.920 55.000 0.00 0.00 0.00 3.01
1432 3699 4.459089 GCTCCAGCCTCACCCGAC 62.459 72.222 0.00 0.00 34.31 4.79
1465 3732 2.162681 CAACAACCTGATGGGAGGAAC 58.837 52.381 0.00 0.00 36.51 3.62
1487 3760 1.918957 AGAGGGATGTGAAGGGGAAAG 59.081 52.381 0.00 0.00 0.00 2.62
1518 3791 3.407967 GGCCACCCATCCGGAGAA 61.408 66.667 11.34 0.00 34.64 2.87
1519 3792 2.190578 GCCACCCATCCGGAGAAG 59.809 66.667 11.34 2.71 34.64 2.85
1521 3794 2.669133 CCACCCATCCGGAGAAGCA 61.669 63.158 11.34 0.00 34.64 3.91
1607 3892 3.196207 AAGAAGCCTCAAGCCGCCA 62.196 57.895 0.00 0.00 45.47 5.69
1625 3910 3.067833 GCCACTAACAGTTCACCTTCTC 58.932 50.000 0.00 0.00 0.00 2.87
1666 3969 2.716217 CCTCCGAAAGCCAAGAAATCT 58.284 47.619 0.00 0.00 0.00 2.40
1714 4017 1.978455 TTGTCCAGGGTGACGCAACT 61.978 55.000 1.61 0.00 38.11 3.16
1715 4018 1.668151 GTCCAGGGTGACGCAACTC 60.668 63.158 1.61 0.00 0.00 3.01
1716 4019 2.137528 TCCAGGGTGACGCAACTCA 61.138 57.895 1.61 0.00 0.00 3.41
1735 4038 6.699575 ACTCATAATGATGTTAAACAGGGC 57.300 37.500 0.00 0.00 34.41 5.19
1782 4085 3.437795 GCGTGCTGCCATTGCTCT 61.438 61.111 0.00 0.00 38.71 4.09
1783 4086 2.986306 GCGTGCTGCCATTGCTCTT 61.986 57.895 0.00 0.00 38.71 2.85
1788 4091 1.897133 TGCTGCCATTGCTCTTTCAAT 59.103 42.857 0.00 0.00 37.16 2.57
1799 4102 2.948315 GCTCTTTCAATGAGACCCATCC 59.052 50.000 4.47 0.00 33.53 3.51
1800 4103 3.371380 GCTCTTTCAATGAGACCCATCCT 60.371 47.826 4.47 0.00 33.53 3.24
1801 4104 4.197750 CTCTTTCAATGAGACCCATCCTG 58.802 47.826 0.00 0.00 33.53 3.86
1802 4105 3.054139 TCTTTCAATGAGACCCATCCTGG 60.054 47.826 0.00 0.00 37.25 4.45
1803 4106 0.548031 TCAATGAGACCCATCCTGGC 59.452 55.000 0.00 0.00 35.79 4.85
1804 4107 0.256752 CAATGAGACCCATCCTGGCA 59.743 55.000 0.00 0.00 35.79 4.92
2062 4365 3.965539 GAGCAGCATGTCCGGCAGT 62.966 63.158 0.00 0.00 39.31 4.40
2077 4383 0.316204 GCAGTGCAACAGGCTTCATT 59.684 50.000 11.09 0.00 45.15 2.57
2091 4397 2.719739 CTTCATTGTGCCAGAGGTGAT 58.280 47.619 0.00 0.00 0.00 3.06
2492 4830 4.934602 TGCTTTTCAAGGGAAAACAACAAG 59.065 37.500 0.00 0.00 45.51 3.16
2573 4922 3.423749 TCAAGATGTCACCATTGCACAT 58.576 40.909 0.00 0.00 33.32 3.21
2574 4923 4.587891 TCAAGATGTCACCATTGCACATA 58.412 39.130 0.00 0.00 30.71 2.29
2575 4924 4.395854 TCAAGATGTCACCATTGCACATAC 59.604 41.667 0.00 0.00 30.71 2.39
2576 4925 3.282021 AGATGTCACCATTGCACATACC 58.718 45.455 0.00 0.00 30.71 2.73
2577 4926 2.575805 TGTCACCATTGCACATACCA 57.424 45.000 0.00 0.00 0.00 3.25
2578 4927 3.084536 TGTCACCATTGCACATACCAT 57.915 42.857 0.00 0.00 0.00 3.55
2579 4928 4.227864 TGTCACCATTGCACATACCATA 57.772 40.909 0.00 0.00 0.00 2.74
2580 4929 3.944650 TGTCACCATTGCACATACCATAC 59.055 43.478 0.00 0.00 0.00 2.39
2581 4930 3.315191 GTCACCATTGCACATACCATACC 59.685 47.826 0.00 0.00 0.00 2.73
2582 4931 3.054065 TCACCATTGCACATACCATACCA 60.054 43.478 0.00 0.00 0.00 3.25
2592 4941 5.436175 CACATACCATACCAAGATGTCCAA 58.564 41.667 0.00 0.00 0.00 3.53
2630 4979 0.322816 AGGTGGCAGTGCAATACCAG 60.323 55.000 26.92 0.00 33.31 4.00
2660 5009 7.201376 GCATGAAATTACAATGTACAGCACAAG 60.201 37.037 0.33 0.00 41.55 3.16
2682 5031 1.808945 GTCAGTTCTGCCTGATGGTTG 59.191 52.381 0.00 0.00 43.03 3.77
2788 5146 6.293955 CGGTTCCTCATGTTAAGTGTTCATTT 60.294 38.462 0.00 0.00 0.00 2.32
3146 5504 6.161381 AGCTTGAACAAATGCTGAATTAAGG 58.839 36.000 0.00 0.00 34.19 2.69
3147 5505 5.349543 GCTTGAACAAATGCTGAATTAAGGG 59.650 40.000 0.00 0.00 0.00 3.95
3148 5506 4.819769 TGAACAAATGCTGAATTAAGGGC 58.180 39.130 0.00 0.00 0.00 5.19
3149 5507 3.893326 ACAAATGCTGAATTAAGGGCC 57.107 42.857 0.00 0.00 0.00 5.80
3150 5508 3.444029 ACAAATGCTGAATTAAGGGCCT 58.556 40.909 0.00 0.00 0.00 5.19
3151 5509 3.448660 ACAAATGCTGAATTAAGGGCCTC 59.551 43.478 6.46 0.00 0.00 4.70
3152 5510 3.677156 AATGCTGAATTAAGGGCCTCT 57.323 42.857 6.46 0.00 0.00 3.69
3153 5511 3.677156 ATGCTGAATTAAGGGCCTCTT 57.323 42.857 6.46 7.24 39.40 2.85
3154 5512 3.456380 TGCTGAATTAAGGGCCTCTTT 57.544 42.857 6.46 0.01 36.93 2.52
3155 5513 3.091545 TGCTGAATTAAGGGCCTCTTTG 58.908 45.455 6.46 0.45 36.93 2.77
3156 5514 3.245229 TGCTGAATTAAGGGCCTCTTTGA 60.245 43.478 6.46 0.00 36.93 2.69
3157 5515 3.956848 GCTGAATTAAGGGCCTCTTTGAT 59.043 43.478 6.46 0.00 36.93 2.57
3158 5516 4.403752 GCTGAATTAAGGGCCTCTTTGATT 59.596 41.667 6.46 0.00 36.93 2.57
3159 5517 5.451103 GCTGAATTAAGGGCCTCTTTGATTC 60.451 44.000 6.46 20.78 37.34 2.52
3160 5518 4.640201 TGAATTAAGGGCCTCTTTGATTCG 59.360 41.667 6.46 0.00 38.38 3.34
3161 5519 2.038387 TAAGGGCCTCTTTGATTCGC 57.962 50.000 6.46 0.00 36.93 4.70
3162 5520 0.038166 AAGGGCCTCTTTGATTCGCA 59.962 50.000 6.46 0.00 29.99 5.10
3163 5521 0.393537 AGGGCCTCTTTGATTCGCAG 60.394 55.000 0.00 0.00 0.00 5.18
3164 5522 1.379642 GGGCCTCTTTGATTCGCAGG 61.380 60.000 0.84 0.00 0.00 4.85
3165 5523 0.392998 GGCCTCTTTGATTCGCAGGA 60.393 55.000 0.00 0.00 0.00 3.86
3166 5524 1.673168 GCCTCTTTGATTCGCAGGAT 58.327 50.000 0.00 0.00 0.00 3.24
3167 5525 1.601430 GCCTCTTTGATTCGCAGGATC 59.399 52.381 0.00 0.00 0.00 3.36
3168 5526 2.216898 CCTCTTTGATTCGCAGGATCC 58.783 52.381 2.48 2.48 0.00 3.36
3169 5527 2.158842 CCTCTTTGATTCGCAGGATCCT 60.159 50.000 9.02 9.02 0.00 3.24
3170 5528 3.070159 CCTCTTTGATTCGCAGGATCCTA 59.930 47.826 15.67 0.00 0.00 2.94
3171 5529 4.443457 CCTCTTTGATTCGCAGGATCCTAA 60.443 45.833 15.67 5.85 0.00 2.69
3172 5530 5.097742 TCTTTGATTCGCAGGATCCTAAA 57.902 39.130 15.67 9.81 0.00 1.85
3173 5531 5.496556 TCTTTGATTCGCAGGATCCTAAAA 58.503 37.500 15.67 9.44 0.00 1.52
3174 5532 5.943416 TCTTTGATTCGCAGGATCCTAAAAA 59.057 36.000 15.67 9.06 0.00 1.94
3175 5533 5.560966 TTGATTCGCAGGATCCTAAAAAC 57.439 39.130 15.67 8.38 0.00 2.43
3176 5534 4.584874 TGATTCGCAGGATCCTAAAAACA 58.415 39.130 15.67 10.81 0.00 2.83
3177 5535 5.192927 TGATTCGCAGGATCCTAAAAACAT 58.807 37.500 15.67 1.94 0.00 2.71
3178 5536 4.963276 TTCGCAGGATCCTAAAAACATG 57.037 40.909 15.67 0.95 0.00 3.21
3179 5537 3.278574 TCGCAGGATCCTAAAAACATGG 58.721 45.455 15.67 0.00 0.00 3.66
3180 5538 2.358898 CGCAGGATCCTAAAAACATGGG 59.641 50.000 15.67 4.96 0.00 4.00
3181 5539 3.631250 GCAGGATCCTAAAAACATGGGA 58.369 45.455 15.67 0.00 0.00 4.37
3182 5540 4.023291 GCAGGATCCTAAAAACATGGGAA 58.977 43.478 15.67 0.00 0.00 3.97
3183 5541 4.651045 GCAGGATCCTAAAAACATGGGAAT 59.349 41.667 15.67 0.00 0.00 3.01
3184 5542 5.452356 GCAGGATCCTAAAAACATGGGAATG 60.452 44.000 15.67 0.00 0.00 2.67
3185 5543 5.069516 CAGGATCCTAAAAACATGGGAATGG 59.930 44.000 15.67 0.00 0.00 3.16
3186 5544 5.043432 AGGATCCTAAAAACATGGGAATGGA 60.043 40.000 14.27 0.00 0.00 3.41
3187 5545 5.660864 GGATCCTAAAAACATGGGAATGGAA 59.339 40.000 3.84 0.00 0.00 3.53
3188 5546 6.156083 GGATCCTAAAAACATGGGAATGGAAA 59.844 38.462 3.84 0.00 0.00 3.13
3189 5547 7.310983 GGATCCTAAAAACATGGGAATGGAAAA 60.311 37.037 3.84 0.00 0.00 2.29
3190 5548 7.380423 TCCTAAAAACATGGGAATGGAAAAA 57.620 32.000 0.00 0.00 0.00 1.94
3191 5549 7.220740 TCCTAAAAACATGGGAATGGAAAAAC 58.779 34.615 0.00 0.00 0.00 2.43
3192 5550 6.995091 CCTAAAAACATGGGAATGGAAAAACA 59.005 34.615 0.00 0.00 0.00 2.83
3193 5551 7.665145 CCTAAAAACATGGGAATGGAAAAACAT 59.335 33.333 0.00 0.00 0.00 2.71
3194 5552 9.717942 CTAAAAACATGGGAATGGAAAAACATA 57.282 29.630 0.00 0.00 0.00 2.29
3195 5553 8.620116 AAAAACATGGGAATGGAAAAACATAG 57.380 30.769 0.00 0.00 0.00 2.23
3196 5554 5.937975 ACATGGGAATGGAAAAACATAGG 57.062 39.130 0.00 0.00 0.00 2.57
3197 5555 5.588845 ACATGGGAATGGAAAAACATAGGA 58.411 37.500 0.00 0.00 0.00 2.94
3198 5556 6.204555 ACATGGGAATGGAAAAACATAGGAT 58.795 36.000 0.00 0.00 0.00 3.24
3199 5557 6.673537 ACATGGGAATGGAAAAACATAGGATT 59.326 34.615 0.00 0.00 0.00 3.01
3200 5558 6.543430 TGGGAATGGAAAAACATAGGATTG 57.457 37.500 0.00 0.00 0.00 2.67
3201 5559 5.424895 TGGGAATGGAAAAACATAGGATTGG 59.575 40.000 0.00 0.00 0.00 3.16
3202 5560 5.660864 GGGAATGGAAAAACATAGGATTGGA 59.339 40.000 0.00 0.00 0.00 3.53
3203 5561 6.156083 GGGAATGGAAAAACATAGGATTGGAA 59.844 38.462 0.00 0.00 0.00 3.53
3204 5562 7.147497 GGGAATGGAAAAACATAGGATTGGAAT 60.147 37.037 0.00 0.00 0.00 3.01
3205 5563 7.712205 GGAATGGAAAAACATAGGATTGGAATG 59.288 37.037 0.00 0.00 0.00 2.67
3206 5564 7.738437 ATGGAAAAACATAGGATTGGAATGT 57.262 32.000 0.00 0.00 35.40 2.71
3207 5565 7.169158 TGGAAAAACATAGGATTGGAATGTC 57.831 36.000 0.00 0.00 32.80 3.06
3208 5566 6.723515 TGGAAAAACATAGGATTGGAATGTCA 59.276 34.615 0.00 0.00 32.80 3.58
3209 5567 7.399765 TGGAAAAACATAGGATTGGAATGTCAT 59.600 33.333 0.00 0.00 32.80 3.06
3210 5568 7.707893 GGAAAAACATAGGATTGGAATGTCATG 59.292 37.037 0.00 0.00 32.80 3.07
3211 5569 6.720112 AAACATAGGATTGGAATGTCATGG 57.280 37.500 0.00 0.00 32.80 3.66
3212 5570 4.147321 ACATAGGATTGGAATGTCATGGC 58.853 43.478 0.00 0.00 0.00 4.40
3213 5571 2.077687 AGGATTGGAATGTCATGGCC 57.922 50.000 0.00 0.00 0.00 5.36
3214 5572 0.670162 GGATTGGAATGTCATGGCCG 59.330 55.000 0.00 0.00 0.00 6.13
3215 5573 1.392589 GATTGGAATGTCATGGCCGT 58.607 50.000 0.00 0.00 0.00 5.68
3216 5574 1.334869 GATTGGAATGTCATGGCCGTC 59.665 52.381 0.00 0.00 0.00 4.79
3217 5575 0.327924 TTGGAATGTCATGGCCGTCT 59.672 50.000 0.00 0.00 0.00 4.18
3218 5576 0.107703 TGGAATGTCATGGCCGTCTC 60.108 55.000 0.00 0.00 0.00 3.36
3219 5577 0.107703 GGAATGTCATGGCCGTCTCA 60.108 55.000 0.00 0.00 0.00 3.27
3220 5578 1.678728 GGAATGTCATGGCCGTCTCAA 60.679 52.381 0.00 0.00 0.00 3.02
3221 5579 2.083774 GAATGTCATGGCCGTCTCAAA 58.916 47.619 0.00 0.00 0.00 2.69
3222 5580 2.198827 ATGTCATGGCCGTCTCAAAA 57.801 45.000 0.00 0.00 0.00 2.44
3223 5581 1.974265 TGTCATGGCCGTCTCAAAAA 58.026 45.000 0.00 0.00 0.00 1.94
3224 5582 2.513753 TGTCATGGCCGTCTCAAAAAT 58.486 42.857 0.00 0.00 0.00 1.82
3225 5583 2.890311 TGTCATGGCCGTCTCAAAAATT 59.110 40.909 0.00 0.00 0.00 1.82
3226 5584 3.244976 GTCATGGCCGTCTCAAAAATTG 58.755 45.455 0.00 0.00 0.00 2.32
3227 5585 1.994779 CATGGCCGTCTCAAAAATTGC 59.005 47.619 0.00 0.00 0.00 3.56
3228 5586 0.039617 TGGCCGTCTCAAAAATTGCG 60.040 50.000 0.00 0.00 0.00 4.85
3229 5587 0.239879 GGCCGTCTCAAAAATTGCGA 59.760 50.000 0.00 0.00 0.00 5.10
3230 5588 1.335506 GGCCGTCTCAAAAATTGCGAA 60.336 47.619 0.00 0.00 0.00 4.70
3231 5589 1.978782 GCCGTCTCAAAAATTGCGAAG 59.021 47.619 0.00 0.00 0.00 3.79
3232 5590 2.350388 GCCGTCTCAAAAATTGCGAAGA 60.350 45.455 0.00 0.00 0.00 2.87
3233 5591 3.670627 GCCGTCTCAAAAATTGCGAAGAT 60.671 43.478 0.00 0.00 0.00 2.40
3234 5592 4.475944 CCGTCTCAAAAATTGCGAAGATT 58.524 39.130 0.00 0.00 0.00 2.40
3235 5593 4.917415 CCGTCTCAAAAATTGCGAAGATTT 59.083 37.500 0.00 0.00 0.00 2.17
3236 5594 5.402270 CCGTCTCAAAAATTGCGAAGATTTT 59.598 36.000 0.00 0.00 38.09 1.82
3237 5595 6.283992 CGTCTCAAAAATTGCGAAGATTTTG 58.716 36.000 13.04 13.04 41.69 2.44
3238 5596 6.584056 GTCTCAAAAATTGCGAAGATTTTGG 58.416 36.000 16.60 7.31 41.04 3.28
3239 5597 5.695816 TCTCAAAAATTGCGAAGATTTTGGG 59.304 36.000 16.60 14.88 42.06 4.12
3240 5598 4.213059 TCAAAAATTGCGAAGATTTTGGGC 59.787 37.500 16.60 0.00 41.04 5.36
3241 5599 3.683365 AAATTGCGAAGATTTTGGGCT 57.317 38.095 0.00 0.00 0.00 5.19
3242 5600 2.660189 ATTGCGAAGATTTTGGGCTG 57.340 45.000 0.00 0.00 0.00 4.85
3243 5601 1.327303 TTGCGAAGATTTTGGGCTGT 58.673 45.000 0.00 0.00 0.00 4.40
3244 5602 1.327303 TGCGAAGATTTTGGGCTGTT 58.673 45.000 0.00 0.00 0.00 3.16
3245 5603 1.269448 TGCGAAGATTTTGGGCTGTTC 59.731 47.619 0.00 0.00 0.00 3.18
3246 5604 1.729149 GCGAAGATTTTGGGCTGTTCG 60.729 52.381 0.00 0.00 40.07 3.95
3247 5605 1.804151 CGAAGATTTTGGGCTGTTCGA 59.196 47.619 0.00 0.00 39.64 3.71
3248 5606 2.420022 CGAAGATTTTGGGCTGTTCGAT 59.580 45.455 0.00 0.00 39.64 3.59
3249 5607 3.119849 CGAAGATTTTGGGCTGTTCGATT 60.120 43.478 0.00 0.00 39.64 3.34
3250 5608 3.855689 AGATTTTGGGCTGTTCGATTG 57.144 42.857 0.00 0.00 0.00 2.67
3251 5609 2.094545 AGATTTTGGGCTGTTCGATTGC 60.095 45.455 0.00 0.00 0.00 3.56
3252 5610 1.035923 TTTTGGGCTGTTCGATTGCA 58.964 45.000 7.03 0.00 0.00 4.08
3253 5611 1.255882 TTTGGGCTGTTCGATTGCAT 58.744 45.000 0.00 0.00 0.00 3.96
3254 5612 0.810648 TTGGGCTGTTCGATTGCATC 59.189 50.000 0.00 0.00 0.00 3.91
3255 5613 0.322366 TGGGCTGTTCGATTGCATCA 60.322 50.000 0.00 2.92 0.00 3.07
3256 5614 0.099436 GGGCTGTTCGATTGCATCAC 59.901 55.000 0.00 0.00 0.00 3.06
3257 5615 0.804364 GGCTGTTCGATTGCATCACA 59.196 50.000 0.00 0.00 0.00 3.58
3258 5616 1.202110 GGCTGTTCGATTGCATCACAG 60.202 52.381 6.77 6.77 36.76 3.66
3259 5617 1.202110 GCTGTTCGATTGCATCACAGG 60.202 52.381 11.87 0.00 35.20 4.00
3260 5618 2.349590 CTGTTCGATTGCATCACAGGA 58.650 47.619 3.70 0.00 32.60 3.86
3261 5619 2.743664 CTGTTCGATTGCATCACAGGAA 59.256 45.455 3.70 0.00 32.60 3.36
3262 5620 3.145286 TGTTCGATTGCATCACAGGAAA 58.855 40.909 0.00 0.00 0.00 3.13
3263 5621 3.567585 TGTTCGATTGCATCACAGGAAAA 59.432 39.130 0.00 0.00 0.00 2.29
3264 5622 4.037327 TGTTCGATTGCATCACAGGAAAAA 59.963 37.500 0.00 0.00 0.00 1.94
3265 5623 4.159377 TCGATTGCATCACAGGAAAAAC 57.841 40.909 0.00 0.00 0.00 2.43
3266 5624 3.567585 TCGATTGCATCACAGGAAAAACA 59.432 39.130 0.00 0.00 0.00 2.83
3267 5625 4.037327 TCGATTGCATCACAGGAAAAACAA 59.963 37.500 0.00 0.00 0.00 2.83
3268 5626 4.744137 CGATTGCATCACAGGAAAAACAAA 59.256 37.500 0.00 0.00 0.00 2.83
3269 5627 5.107760 CGATTGCATCACAGGAAAAACAAAG 60.108 40.000 0.00 0.00 0.00 2.77
3270 5628 4.057406 TGCATCACAGGAAAAACAAAGG 57.943 40.909 0.00 0.00 0.00 3.11
3271 5629 3.703556 TGCATCACAGGAAAAACAAAGGA 59.296 39.130 0.00 0.00 0.00 3.36
3272 5630 4.344679 TGCATCACAGGAAAAACAAAGGAT 59.655 37.500 0.00 0.00 0.00 3.24
3273 5631 5.163322 TGCATCACAGGAAAAACAAAGGATT 60.163 36.000 0.00 0.00 0.00 3.01
3274 5632 5.406477 GCATCACAGGAAAAACAAAGGATTC 59.594 40.000 0.00 0.00 0.00 2.52
3275 5633 6.739565 GCATCACAGGAAAAACAAAGGATTCT 60.740 38.462 0.00 0.00 0.00 2.40
3276 5634 6.790232 TCACAGGAAAAACAAAGGATTCTT 57.210 33.333 0.00 0.00 34.07 2.52
3277 5635 7.181569 TCACAGGAAAAACAAAGGATTCTTT 57.818 32.000 0.00 0.00 43.41 2.52
3278 5636 7.264947 TCACAGGAAAAACAAAGGATTCTTTC 58.735 34.615 0.00 0.00 40.92 2.62
3279 5637 7.124147 TCACAGGAAAAACAAAGGATTCTTTCT 59.876 33.333 0.00 0.00 40.92 2.52
3280 5638 8.413229 CACAGGAAAAACAAAGGATTCTTTCTA 58.587 33.333 0.00 0.00 40.92 2.10
3281 5639 8.977412 ACAGGAAAAACAAAGGATTCTTTCTAA 58.023 29.630 0.00 0.00 40.92 2.10
3282 5640 9.468532 CAGGAAAAACAAAGGATTCTTTCTAAG 57.531 33.333 0.00 0.00 40.92 2.18
3283 5641 9.421399 AGGAAAAACAAAGGATTCTTTCTAAGA 57.579 29.630 0.00 0.00 40.92 2.10
3284 5642 9.684448 GGAAAAACAAAGGATTCTTTCTAAGAG 57.316 33.333 0.00 0.00 40.92 2.85
3285 5643 9.684448 GAAAAACAAAGGATTCTTTCTAAGAGG 57.316 33.333 0.00 0.00 40.92 3.69
3286 5644 8.768501 AAAACAAAGGATTCTTTCTAAGAGGT 57.231 30.769 0.00 0.00 40.92 3.85
3287 5645 8.768501 AAACAAAGGATTCTTTCTAAGAGGTT 57.231 30.769 0.00 0.00 40.92 3.50
3288 5646 8.768501 AACAAAGGATTCTTTCTAAGAGGTTT 57.231 30.769 0.00 0.00 40.92 3.27
3289 5647 8.171164 ACAAAGGATTCTTTCTAAGAGGTTTG 57.829 34.615 0.00 0.00 40.92 2.93
3290 5648 7.998964 ACAAAGGATTCTTTCTAAGAGGTTTGA 59.001 33.333 0.00 0.00 40.92 2.69
3291 5649 8.510505 CAAAGGATTCTTTCTAAGAGGTTTGAG 58.489 37.037 0.00 0.00 40.92 3.02
3292 5650 7.323052 AGGATTCTTTCTAAGAGGTTTGAGT 57.677 36.000 0.00 0.00 39.03 3.41
3293 5651 7.164803 AGGATTCTTTCTAAGAGGTTTGAGTG 58.835 38.462 0.00 0.00 39.03 3.51
3294 5652 6.372937 GGATTCTTTCTAAGAGGTTTGAGTGG 59.627 42.308 0.00 0.00 39.03 4.00
3295 5653 6.494666 TTCTTTCTAAGAGGTTTGAGTGGA 57.505 37.500 0.00 0.00 39.03 4.02
3296 5654 6.688073 TCTTTCTAAGAGGTTTGAGTGGAT 57.312 37.500 0.00 0.00 32.71 3.41
3297 5655 6.467677 TCTTTCTAAGAGGTTTGAGTGGATG 58.532 40.000 0.00 0.00 32.71 3.51
3298 5656 6.270000 TCTTTCTAAGAGGTTTGAGTGGATGA 59.730 38.462 0.00 0.00 32.71 2.92
3299 5657 6.627087 TTCTAAGAGGTTTGAGTGGATGAT 57.373 37.500 0.00 0.00 0.00 2.45
3300 5658 7.733773 TTCTAAGAGGTTTGAGTGGATGATA 57.266 36.000 0.00 0.00 0.00 2.15
3301 5659 7.921041 TCTAAGAGGTTTGAGTGGATGATAT 57.079 36.000 0.00 0.00 0.00 1.63
3302 5660 9.434275 TTCTAAGAGGTTTGAGTGGATGATATA 57.566 33.333 0.00 0.00 0.00 0.86
3303 5661 9.434275 TCTAAGAGGTTTGAGTGGATGATATAA 57.566 33.333 0.00 0.00 0.00 0.98
3314 5672 9.782900 TGAGTGGATGATATAAATACTATGGGA 57.217 33.333 0.00 0.00 0.00 4.37
3330 5688 7.793948 ACTATGGGAAGTAGTACAAAGAAGT 57.206 36.000 2.52 0.00 30.91 3.01
3331 5689 7.838884 ACTATGGGAAGTAGTACAAAGAAGTC 58.161 38.462 2.52 0.00 30.91 3.01
3332 5690 5.479124 TGGGAAGTAGTACAAAGAAGTCC 57.521 43.478 2.52 0.00 0.00 3.85
3333 5691 5.152934 TGGGAAGTAGTACAAAGAAGTCCT 58.847 41.667 2.52 0.00 0.00 3.85
3334 5692 5.605488 TGGGAAGTAGTACAAAGAAGTCCTT 59.395 40.000 2.52 0.00 36.47 3.36
3335 5693 6.783977 TGGGAAGTAGTACAAAGAAGTCCTTA 59.216 38.462 2.52 0.00 34.00 2.69
3336 5694 7.039223 TGGGAAGTAGTACAAAGAAGTCCTTAG 60.039 40.741 2.52 0.00 34.00 2.18
3337 5695 7.321908 GGAAGTAGTACAAAGAAGTCCTTAGG 58.678 42.308 2.52 0.00 34.00 2.69
3338 5696 7.178097 GGAAGTAGTACAAAGAAGTCCTTAGGA 59.822 40.741 0.00 0.00 34.00 2.94
3339 5697 8.488308 AAGTAGTACAAAGAAGTCCTTAGGAA 57.512 34.615 0.98 0.00 34.00 3.36
3340 5698 8.488308 AGTAGTACAAAGAAGTCCTTAGGAAA 57.512 34.615 0.98 0.00 34.00 3.13
3341 5699 8.931568 AGTAGTACAAAGAAGTCCTTAGGAAAA 58.068 33.333 0.98 0.00 34.00 2.29
3342 5700 9.551734 GTAGTACAAAGAAGTCCTTAGGAAAAA 57.448 33.333 0.98 0.00 34.00 1.94
3380 5738 9.921637 TTTAATCCTATGAATCAAACAACCAAC 57.078 29.630 0.00 0.00 0.00 3.77
3381 5739 7.537596 AATCCTATGAATCAAACAACCAACA 57.462 32.000 0.00 0.00 0.00 3.33
3382 5740 6.325919 TCCTATGAATCAAACAACCAACAC 57.674 37.500 0.00 0.00 0.00 3.32
3383 5741 5.830457 TCCTATGAATCAAACAACCAACACA 59.170 36.000 0.00 0.00 0.00 3.72
3384 5742 6.016360 TCCTATGAATCAAACAACCAACACAG 60.016 38.462 0.00 0.00 0.00 3.66
3385 5743 4.383850 TGAATCAAACAACCAACACAGG 57.616 40.909 0.00 0.00 0.00 4.00
3386 5744 4.019858 TGAATCAAACAACCAACACAGGA 58.980 39.130 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.185394 CCTGTATGTACCGTTATTGTGCA 58.815 43.478 0.00 0.00 32.88 4.57
1 2 4.186159 ACCTGTATGTACCGTTATTGTGC 58.814 43.478 0.00 0.00 0.00 4.57
2 3 6.812656 TGTAACCTGTATGTACCGTTATTGTG 59.187 38.462 0.00 0.00 0.00 3.33
3 4 6.934056 TGTAACCTGTATGTACCGTTATTGT 58.066 36.000 0.00 0.00 0.00 2.71
4 5 8.971321 GTATGTAACCTGTATGTACCGTTATTG 58.029 37.037 0.00 0.00 0.00 1.90
5 6 8.694540 TGTATGTAACCTGTATGTACCGTTATT 58.305 33.333 0.00 0.00 0.00 1.40
6 7 8.236585 TGTATGTAACCTGTATGTACCGTTAT 57.763 34.615 0.00 0.00 0.00 1.89
7 8 7.637631 TGTATGTAACCTGTATGTACCGTTA 57.362 36.000 0.00 0.00 0.00 3.18
8 9 6.528537 TGTATGTAACCTGTATGTACCGTT 57.471 37.500 0.00 0.00 0.00 4.44
9 10 6.528537 TTGTATGTAACCTGTATGTACCGT 57.471 37.500 0.00 0.00 0.00 4.83
10 11 7.707464 TGAATTGTATGTAACCTGTATGTACCG 59.293 37.037 0.00 0.00 0.00 4.02
11 12 8.951787 TGAATTGTATGTAACCTGTATGTACC 57.048 34.615 0.00 0.00 0.00 3.34
13 14 9.945904 TGTTGAATTGTATGTAACCTGTATGTA 57.054 29.630 0.00 0.00 0.00 2.29
14 15 8.856153 TGTTGAATTGTATGTAACCTGTATGT 57.144 30.769 0.00 0.00 0.00 2.29
15 16 9.773328 CTTGTTGAATTGTATGTAACCTGTATG 57.227 33.333 0.00 0.00 0.00 2.39
16 17 8.458843 GCTTGTTGAATTGTATGTAACCTGTAT 58.541 33.333 0.00 0.00 0.00 2.29
17 18 7.445707 TGCTTGTTGAATTGTATGTAACCTGTA 59.554 33.333 0.00 0.00 0.00 2.74
18 19 6.264292 TGCTTGTTGAATTGTATGTAACCTGT 59.736 34.615 0.00 0.00 0.00 4.00
19 20 6.676950 TGCTTGTTGAATTGTATGTAACCTG 58.323 36.000 0.00 0.00 0.00 4.00
20 21 6.892658 TGCTTGTTGAATTGTATGTAACCT 57.107 33.333 0.00 0.00 0.00 3.50
21 22 7.700656 GGTATGCTTGTTGAATTGTATGTAACC 59.299 37.037 0.00 0.00 0.00 2.85
22 23 8.240682 TGGTATGCTTGTTGAATTGTATGTAAC 58.759 33.333 0.00 0.00 0.00 2.50
23 24 8.341892 TGGTATGCTTGTTGAATTGTATGTAA 57.658 30.769 0.00 0.00 0.00 2.41
24 25 7.929941 TGGTATGCTTGTTGAATTGTATGTA 57.070 32.000 0.00 0.00 0.00 2.29
25 26 6.832520 TGGTATGCTTGTTGAATTGTATGT 57.167 33.333 0.00 0.00 0.00 2.29
26 27 7.259882 ACATGGTATGCTTGTTGAATTGTATG 58.740 34.615 0.00 0.00 0.00 2.39
27 28 7.408756 ACATGGTATGCTTGTTGAATTGTAT 57.591 32.000 0.00 0.00 0.00 2.29
28 29 6.832520 ACATGGTATGCTTGTTGAATTGTA 57.167 33.333 0.00 0.00 0.00 2.41
29 30 5.726980 ACATGGTATGCTTGTTGAATTGT 57.273 34.783 0.00 0.00 0.00 2.71
36 37 3.069300 TGTTGCAACATGGTATGCTTGTT 59.931 39.130 27.96 0.00 42.97 2.83
37 38 2.627221 TGTTGCAACATGGTATGCTTGT 59.373 40.909 27.96 0.00 42.97 3.16
103 104 8.590204 TGTAATCACAATGTAGTCTACAGGAAA 58.410 33.333 17.43 7.21 42.77 3.13
104 105 8.033038 GTGTAATCACAATGTAGTCTACAGGAA 58.967 37.037 17.43 7.49 41.85 3.36
162 163 8.487313 TGCACAGTTATAAATCGTAATTCACT 57.513 30.769 0.00 0.00 0.00 3.41
169 173 5.460748 CACGGATGCACAGTTATAAATCGTA 59.539 40.000 0.00 0.00 0.00 3.43
181 185 0.244721 TCTCAGTCACGGATGCACAG 59.755 55.000 0.00 0.00 0.00 3.66
202 206 6.752815 TCGTTTTACAAAAGGGAATGTCAAAC 59.247 34.615 7.15 5.91 38.95 2.93
210 214 6.812656 GGTTTTCTTCGTTTTACAAAAGGGAA 59.187 34.615 7.15 4.71 35.22 3.97
221 225 1.202325 GCCACGGGTTTTCTTCGTTTT 60.202 47.619 0.00 0.00 34.73 2.43
248 252 3.136009 AGGGTTTTAACAAGACGGAGG 57.864 47.619 0.00 0.00 0.00 4.30
293 1717 2.629617 CCCAGTCTCATGCCAAGTTTTT 59.370 45.455 0.00 0.00 0.00 1.94
298 1722 1.001764 TGCCCAGTCTCATGCCAAG 60.002 57.895 0.00 0.00 0.00 3.61
303 1727 2.486472 AAACTCTGCCCAGTCTCATG 57.514 50.000 0.00 0.00 0.00 3.07
312 2459 1.269051 CCACGTTTGAAAACTCTGCCC 60.269 52.381 4.54 0.00 36.77 5.36
392 2539 5.074115 TGAATATGACGTGGGAAAAGGTTT 58.926 37.500 0.00 0.00 0.00 3.27
448 2595 2.046217 GGGAGGAGGCGGTCAAAC 60.046 66.667 0.00 0.00 0.00 2.93
571 2734 2.586357 GAGGCGATCGGGTCAAGC 60.586 66.667 18.30 0.00 0.00 4.01
631 2845 0.038251 CTAGCGCTGGTCAGAACACA 60.038 55.000 22.90 0.00 0.00 3.72
658 2872 1.124780 TTCTCGGTGGACTGGTCAAA 58.875 50.000 3.10 0.00 0.00 2.69
726 2974 5.642919 CCAAAGCCAAAAATAAATAGCAGCA 59.357 36.000 0.00 0.00 0.00 4.41
727 2975 5.643348 ACCAAAGCCAAAAATAAATAGCAGC 59.357 36.000 0.00 0.00 0.00 5.25
728 2976 6.873076 TGACCAAAGCCAAAAATAAATAGCAG 59.127 34.615 0.00 0.00 0.00 4.24
737 2985 3.383185 TCGTCTTGACCAAAGCCAAAAAT 59.617 39.130 0.00 0.00 35.69 1.82
770 3018 2.125512 GATGCCGGCTTCACTCGT 60.126 61.111 31.35 2.33 0.00 4.18
781 3029 0.721718 GAAGAAACTCACCGATGCCG 59.278 55.000 0.00 0.00 0.00 5.69
829 3080 4.776837 TCCCCATGTACTAGTAACCGAAAA 59.223 41.667 3.61 0.00 0.00 2.29
840 3091 3.021695 CGTGAACTCTCCCCATGTACTA 58.978 50.000 0.00 0.00 0.00 1.82
841 3092 1.825474 CGTGAACTCTCCCCATGTACT 59.175 52.381 0.00 0.00 0.00 2.73
843 3094 1.191535 CCGTGAACTCTCCCCATGTA 58.808 55.000 0.00 0.00 0.00 2.29
844 3095 0.544357 TCCGTGAACTCTCCCCATGT 60.544 55.000 0.00 0.00 0.00 3.21
846 3097 1.358152 TTTCCGTGAACTCTCCCCAT 58.642 50.000 0.00 0.00 0.00 4.00
847 3098 1.358152 ATTTCCGTGAACTCTCCCCA 58.642 50.000 0.00 0.00 0.00 4.96
848 3099 2.084546 CAATTTCCGTGAACTCTCCCC 58.915 52.381 0.00 0.00 0.00 4.81
849 3100 2.084546 CCAATTTCCGTGAACTCTCCC 58.915 52.381 0.00 0.00 0.00 4.30
851 3102 2.084546 CCCCAATTTCCGTGAACTCTC 58.915 52.381 0.00 0.00 0.00 3.20
852 3103 1.702957 TCCCCAATTTCCGTGAACTCT 59.297 47.619 0.00 0.00 0.00 3.24
880 3131 1.105759 GGCTGCTTGATTAGGGCCAG 61.106 60.000 6.18 0.00 39.38 4.85
898 3152 4.944962 TGATGAGAAAATACAAGCACGG 57.055 40.909 0.00 0.00 0.00 4.94
928 3182 6.145338 AGCAACTAACTAGTACGTATGCAT 57.855 37.500 20.30 3.79 37.46 3.96
977 3231 4.523173 TCGGTAGAATCTGAAACAGAGTGT 59.477 41.667 6.45 5.42 44.08 3.55
989 3243 5.962433 TGAAACTCGAATTCGGTAGAATCT 58.038 37.500 26.47 5.79 45.66 2.40
990 3244 6.642683 TTGAAACTCGAATTCGGTAGAATC 57.357 37.500 26.47 18.61 45.66 2.52
992 3246 6.847956 TTTTGAAACTCGAATTCGGTAGAA 57.152 33.333 26.47 13.23 41.13 2.10
993 3247 6.847956 TTTTTGAAACTCGAATTCGGTAGA 57.152 33.333 26.47 7.38 40.29 2.59
1246 3507 0.036388 TCTTGTGGTCATCGGAAGCC 60.036 55.000 0.00 0.00 0.00 4.35
1252 3513 0.798776 GCCTTGTCTTGTGGTCATCG 59.201 55.000 0.00 0.00 0.00 3.84
1261 3522 1.242076 CCTTGACCAGCCTTGTCTTG 58.758 55.000 0.00 0.00 33.83 3.02
1266 3533 0.673644 CCGTACCTTGACCAGCCTTG 60.674 60.000 0.00 0.00 0.00 3.61
1425 3692 4.530857 GAGATGGCCCGTCGGGTG 62.531 72.222 30.60 7.71 46.51 4.61
1432 3699 0.734889 GTTGTTGATGAGATGGCCCG 59.265 55.000 0.00 0.00 0.00 6.13
1435 3702 2.715046 TCAGGTTGTTGATGAGATGGC 58.285 47.619 0.00 0.00 0.00 4.40
1465 3732 1.289160 TCCCCTTCACATCCCTCTTG 58.711 55.000 0.00 0.00 0.00 3.02
1502 3775 2.190578 CTTCTCCGGATGGGTGGC 59.809 66.667 3.57 0.00 37.00 5.01
1518 3791 2.571212 TGTTCAGTGATTCGGTTTGCT 58.429 42.857 0.00 0.00 0.00 3.91
1519 3792 3.003275 TCTTGTTCAGTGATTCGGTTTGC 59.997 43.478 0.00 0.00 0.00 3.68
1521 3794 3.815401 CCTCTTGTTCAGTGATTCGGTTT 59.185 43.478 0.00 0.00 0.00 3.27
1586 3871 1.916697 GCGGCTTGAGGCTTCTTCAC 61.917 60.000 0.00 0.00 41.46 3.18
1588 3873 2.402572 GGCGGCTTGAGGCTTCTTC 61.403 63.158 0.00 0.00 41.46 2.87
1607 3892 5.128827 TCTTGTGAGAAGGTGAACTGTTAGT 59.871 40.000 0.00 0.00 0.00 2.24
1625 3910 2.677875 GCCAGCCCCCTTCTTGTG 60.678 66.667 0.00 0.00 0.00 3.33
1714 4017 6.663093 ACTTGCCCTGTTTAACATCATTATGA 59.337 34.615 0.00 0.00 36.54 2.15
1715 4018 6.866480 ACTTGCCCTGTTTAACATCATTATG 58.134 36.000 0.00 0.00 39.17 1.90
1716 4019 6.663093 TGACTTGCCCTGTTTAACATCATTAT 59.337 34.615 0.00 0.00 0.00 1.28
1735 4038 2.095161 GTCGGGAGTGTAGAGTGACTTG 60.095 54.545 0.00 0.00 0.00 3.16
2048 4351 3.848301 TTGCACTGCCGGACATGCT 62.848 57.895 20.56 0.00 35.27 3.79
2062 4365 0.032403 GCACAATGAAGCCTGTTGCA 59.968 50.000 0.00 0.00 44.83 4.08
2077 4383 1.002990 CAGCATCACCTCTGGCACA 60.003 57.895 0.00 0.00 0.00 4.57
2218 4524 4.101942 CGATCTTGGAGAAGAGAGTTTCG 58.898 47.826 0.00 0.00 41.62 3.46
2492 4830 6.417191 TCTCCGTCACAATTATTTTACAGC 57.583 37.500 0.00 0.00 0.00 4.40
2508 4846 4.377839 TTGAGATGTGAGATTCTCCGTC 57.622 45.455 11.12 12.09 38.05 4.79
2573 4922 5.708736 ACATTGGACATCTTGGTATGGTA 57.291 39.130 0.00 0.00 0.00 3.25
2574 4923 4.591321 ACATTGGACATCTTGGTATGGT 57.409 40.909 0.00 0.00 0.00 3.55
2575 4924 6.183360 GGTTAACATTGGACATCTTGGTATGG 60.183 42.308 8.10 0.00 0.00 2.74
2576 4925 6.376864 TGGTTAACATTGGACATCTTGGTATG 59.623 38.462 8.10 0.00 0.00 2.39
2577 4926 6.489603 TGGTTAACATTGGACATCTTGGTAT 58.510 36.000 8.10 0.00 0.00 2.73
2578 4927 5.882040 TGGTTAACATTGGACATCTTGGTA 58.118 37.500 8.10 0.00 0.00 3.25
2579 4928 4.735369 TGGTTAACATTGGACATCTTGGT 58.265 39.130 8.10 0.00 0.00 3.67
2580 4929 5.720371 TTGGTTAACATTGGACATCTTGG 57.280 39.130 8.10 0.00 0.00 3.61
2581 4930 7.605449 AGATTTGGTTAACATTGGACATCTTG 58.395 34.615 8.10 0.00 0.00 3.02
2582 4931 7.362056 CGAGATTTGGTTAACATTGGACATCTT 60.362 37.037 8.10 0.00 0.00 2.40
2592 4941 4.695455 CACCTGTCGAGATTTGGTTAACAT 59.305 41.667 8.10 0.00 0.00 2.71
2630 4979 6.021468 GCTGTACATTGTAATTTCATGCGTTC 60.021 38.462 0.00 0.00 0.00 3.95
2682 5031 1.290009 GTGCCTGGGTGTTGATTGC 59.710 57.895 0.00 0.00 0.00 3.56
2741 5099 4.322049 CGGTGAGAGTACATTCCAGTCTTT 60.322 45.833 0.00 0.00 0.00 2.52
2788 5146 0.684535 TGTTTCGACATCTGGCTCCA 59.315 50.000 0.00 0.00 0.00 3.86
2841 5199 8.615211 GCACTGATTTTCTTTTTCAAGGAAATT 58.385 29.630 3.29 0.00 45.06 1.82
2845 5203 5.128499 TGGCACTGATTTTCTTTTTCAAGGA 59.872 36.000 0.00 0.00 0.00 3.36
3146 5504 0.392998 TCCTGCGAATCAAAGAGGCC 60.393 55.000 0.00 0.00 0.00 5.19
3147 5505 1.601430 GATCCTGCGAATCAAAGAGGC 59.399 52.381 0.00 0.00 0.00 4.70
3148 5506 2.158842 AGGATCCTGCGAATCAAAGAGG 60.159 50.000 15.29 0.00 0.00 3.69
3149 5507 3.191078 AGGATCCTGCGAATCAAAGAG 57.809 47.619 15.29 0.00 0.00 2.85
3150 5508 4.753516 TTAGGATCCTGCGAATCAAAGA 57.246 40.909 25.28 0.00 0.00 2.52
3151 5509 5.818136 TTTTAGGATCCTGCGAATCAAAG 57.182 39.130 25.28 0.00 0.00 2.77
3152 5510 5.475220 TGTTTTTAGGATCCTGCGAATCAAA 59.525 36.000 25.28 11.77 0.00 2.69
3153 5511 5.007034 TGTTTTTAGGATCCTGCGAATCAA 58.993 37.500 25.28 5.60 0.00 2.57
3154 5512 4.584874 TGTTTTTAGGATCCTGCGAATCA 58.415 39.130 25.28 16.15 0.00 2.57
3155 5513 5.506317 CCATGTTTTTAGGATCCTGCGAATC 60.506 44.000 25.28 14.06 0.00 2.52
3156 5514 4.339247 CCATGTTTTTAGGATCCTGCGAAT 59.661 41.667 25.28 7.51 0.00 3.34
3157 5515 3.694072 CCATGTTTTTAGGATCCTGCGAA 59.306 43.478 25.28 13.07 0.00 4.70
3158 5516 3.278574 CCATGTTTTTAGGATCCTGCGA 58.721 45.455 25.28 7.36 0.00 5.10
3159 5517 2.358898 CCCATGTTTTTAGGATCCTGCG 59.641 50.000 25.28 3.39 0.00 5.18
3160 5518 3.631250 TCCCATGTTTTTAGGATCCTGC 58.369 45.455 25.28 9.44 0.00 4.85
3161 5519 5.069516 CCATTCCCATGTTTTTAGGATCCTG 59.930 44.000 25.28 5.43 0.00 3.86
3162 5520 5.043432 TCCATTCCCATGTTTTTAGGATCCT 60.043 40.000 20.48 20.48 0.00 3.24
3163 5521 5.208121 TCCATTCCCATGTTTTTAGGATCC 58.792 41.667 2.48 2.48 0.00 3.36
3164 5522 6.790232 TTCCATTCCCATGTTTTTAGGATC 57.210 37.500 0.00 0.00 0.00 3.36
3165 5523 7.566658 TTTTCCATTCCCATGTTTTTAGGAT 57.433 32.000 0.00 0.00 0.00 3.24
3166 5524 7.147479 TGTTTTTCCATTCCCATGTTTTTAGGA 60.147 33.333 0.00 0.00 0.00 2.94
3167 5525 6.995091 TGTTTTTCCATTCCCATGTTTTTAGG 59.005 34.615 0.00 0.00 0.00 2.69
3168 5526 8.620116 ATGTTTTTCCATTCCCATGTTTTTAG 57.380 30.769 0.00 0.00 0.00 1.85
3169 5527 9.717942 CTATGTTTTTCCATTCCCATGTTTTTA 57.282 29.630 0.00 0.00 0.00 1.52
3170 5528 7.665145 CCTATGTTTTTCCATTCCCATGTTTTT 59.335 33.333 0.00 0.00 0.00 1.94
3171 5529 7.017056 TCCTATGTTTTTCCATTCCCATGTTTT 59.983 33.333 0.00 0.00 0.00 2.43
3172 5530 6.500049 TCCTATGTTTTTCCATTCCCATGTTT 59.500 34.615 0.00 0.00 0.00 2.83
3173 5531 6.022315 TCCTATGTTTTTCCATTCCCATGTT 58.978 36.000 0.00 0.00 0.00 2.71
3174 5532 5.588845 TCCTATGTTTTTCCATTCCCATGT 58.411 37.500 0.00 0.00 0.00 3.21
3175 5533 6.736110 ATCCTATGTTTTTCCATTCCCATG 57.264 37.500 0.00 0.00 0.00 3.66
3176 5534 6.100134 CCAATCCTATGTTTTTCCATTCCCAT 59.900 38.462 0.00 0.00 0.00 4.00
3177 5535 5.424895 CCAATCCTATGTTTTTCCATTCCCA 59.575 40.000 0.00 0.00 0.00 4.37
3178 5536 5.660864 TCCAATCCTATGTTTTTCCATTCCC 59.339 40.000 0.00 0.00 0.00 3.97
3179 5537 6.790232 TCCAATCCTATGTTTTTCCATTCC 57.210 37.500 0.00 0.00 0.00 3.01
3180 5538 8.260114 ACATTCCAATCCTATGTTTTTCCATTC 58.740 33.333 0.00 0.00 0.00 2.67
3181 5539 8.149631 ACATTCCAATCCTATGTTTTTCCATT 57.850 30.769 0.00 0.00 0.00 3.16
3182 5540 7.399765 TGACATTCCAATCCTATGTTTTTCCAT 59.600 33.333 0.00 0.00 32.94 3.41
3183 5541 6.723515 TGACATTCCAATCCTATGTTTTTCCA 59.276 34.615 0.00 0.00 32.94 3.53
3184 5542 7.169158 TGACATTCCAATCCTATGTTTTTCC 57.831 36.000 0.00 0.00 32.94 3.13
3185 5543 7.707893 CCATGACATTCCAATCCTATGTTTTTC 59.292 37.037 0.00 0.00 32.94 2.29
3186 5544 7.558604 CCATGACATTCCAATCCTATGTTTTT 58.441 34.615 0.00 0.00 32.94 1.94
3187 5545 6.407299 GCCATGACATTCCAATCCTATGTTTT 60.407 38.462 0.00 0.00 32.94 2.43
3188 5546 5.069516 GCCATGACATTCCAATCCTATGTTT 59.930 40.000 0.00 0.00 32.94 2.83
3189 5547 4.586001 GCCATGACATTCCAATCCTATGTT 59.414 41.667 0.00 0.00 32.94 2.71
3190 5548 4.147321 GCCATGACATTCCAATCCTATGT 58.853 43.478 0.00 0.00 35.33 2.29
3191 5549 3.508793 GGCCATGACATTCCAATCCTATG 59.491 47.826 0.00 0.00 0.00 2.23
3192 5550 3.771216 GGCCATGACATTCCAATCCTAT 58.229 45.455 0.00 0.00 0.00 2.57
3193 5551 2.487086 CGGCCATGACATTCCAATCCTA 60.487 50.000 2.24 0.00 0.00 2.94
3194 5552 1.751733 CGGCCATGACATTCCAATCCT 60.752 52.381 2.24 0.00 0.00 3.24
3195 5553 0.670162 CGGCCATGACATTCCAATCC 59.330 55.000 2.24 0.00 0.00 3.01
3196 5554 1.334869 GACGGCCATGACATTCCAATC 59.665 52.381 2.24 0.00 0.00 2.67
3197 5555 1.064463 AGACGGCCATGACATTCCAAT 60.064 47.619 2.24 0.00 0.00 3.16
3198 5556 0.327924 AGACGGCCATGACATTCCAA 59.672 50.000 2.24 0.00 0.00 3.53
3199 5557 0.107703 GAGACGGCCATGACATTCCA 60.108 55.000 2.24 0.00 0.00 3.53
3200 5558 0.107703 TGAGACGGCCATGACATTCC 60.108 55.000 2.24 0.00 0.00 3.01
3201 5559 1.737838 TTGAGACGGCCATGACATTC 58.262 50.000 2.24 0.00 0.00 2.67
3202 5560 2.198827 TTTGAGACGGCCATGACATT 57.801 45.000 2.24 0.00 0.00 2.71
3203 5561 2.198827 TTTTGAGACGGCCATGACAT 57.801 45.000 2.24 0.00 0.00 3.06
3204 5562 1.974265 TTTTTGAGACGGCCATGACA 58.026 45.000 2.24 0.00 0.00 3.58
3205 5563 3.244976 CAATTTTTGAGACGGCCATGAC 58.755 45.455 2.24 0.00 0.00 3.06
3206 5564 2.352617 GCAATTTTTGAGACGGCCATGA 60.353 45.455 2.24 0.00 0.00 3.07
3207 5565 1.994779 GCAATTTTTGAGACGGCCATG 59.005 47.619 2.24 0.00 0.00 3.66
3208 5566 1.402720 CGCAATTTTTGAGACGGCCAT 60.403 47.619 2.24 0.00 31.66 4.40
3209 5567 0.039617 CGCAATTTTTGAGACGGCCA 60.040 50.000 2.24 0.00 31.66 5.36
3210 5568 0.239879 TCGCAATTTTTGAGACGGCC 59.760 50.000 0.00 0.00 34.50 6.13
3211 5569 1.978782 CTTCGCAATTTTTGAGACGGC 59.021 47.619 0.00 0.00 39.21 5.68
3212 5570 3.536158 TCTTCGCAATTTTTGAGACGG 57.464 42.857 0.00 0.00 39.21 4.79
3213 5571 6.283992 CAAAATCTTCGCAATTTTTGAGACG 58.716 36.000 0.00 0.00 40.01 4.18
3214 5572 6.346838 CCCAAAATCTTCGCAATTTTTGAGAC 60.347 38.462 8.18 0.00 40.01 3.36
3215 5573 5.695816 CCCAAAATCTTCGCAATTTTTGAGA 59.304 36.000 8.18 0.00 40.01 3.27
3216 5574 5.615325 GCCCAAAATCTTCGCAATTTTTGAG 60.615 40.000 8.18 0.00 40.01 3.02
3217 5575 4.213059 GCCCAAAATCTTCGCAATTTTTGA 59.787 37.500 8.18 0.00 40.01 2.69
3218 5576 4.213906 AGCCCAAAATCTTCGCAATTTTTG 59.786 37.500 0.00 0.00 38.28 2.44
3219 5577 4.213906 CAGCCCAAAATCTTCGCAATTTTT 59.786 37.500 0.00 0.00 34.84 1.94
3220 5578 3.747529 CAGCCCAAAATCTTCGCAATTTT 59.252 39.130 0.00 0.00 36.91 1.82
3221 5579 3.244181 ACAGCCCAAAATCTTCGCAATTT 60.244 39.130 0.00 0.00 0.00 1.82
3222 5580 2.299867 ACAGCCCAAAATCTTCGCAATT 59.700 40.909 0.00 0.00 0.00 2.32
3223 5581 1.895131 ACAGCCCAAAATCTTCGCAAT 59.105 42.857 0.00 0.00 0.00 3.56
3224 5582 1.327303 ACAGCCCAAAATCTTCGCAA 58.673 45.000 0.00 0.00 0.00 4.85
3225 5583 1.269448 GAACAGCCCAAAATCTTCGCA 59.731 47.619 0.00 0.00 0.00 5.10
3226 5584 1.729149 CGAACAGCCCAAAATCTTCGC 60.729 52.381 0.00 0.00 0.00 4.70
3227 5585 1.804151 TCGAACAGCCCAAAATCTTCG 59.196 47.619 0.00 0.00 33.47 3.79
3228 5586 4.168760 CAATCGAACAGCCCAAAATCTTC 58.831 43.478 0.00 0.00 0.00 2.87
3229 5587 3.614870 GCAATCGAACAGCCCAAAATCTT 60.615 43.478 0.00 0.00 0.00 2.40
3230 5588 2.094545 GCAATCGAACAGCCCAAAATCT 60.095 45.455 0.00 0.00 0.00 2.40
3231 5589 2.262211 GCAATCGAACAGCCCAAAATC 58.738 47.619 0.00 0.00 0.00 2.17
3232 5590 1.617850 TGCAATCGAACAGCCCAAAAT 59.382 42.857 0.00 0.00 0.00 1.82
3233 5591 1.035923 TGCAATCGAACAGCCCAAAA 58.964 45.000 0.00 0.00 0.00 2.44
3234 5592 1.202114 GATGCAATCGAACAGCCCAAA 59.798 47.619 0.00 0.00 31.13 3.28
3235 5593 0.810648 GATGCAATCGAACAGCCCAA 59.189 50.000 0.00 0.00 31.13 4.12
3236 5594 2.481212 GATGCAATCGAACAGCCCA 58.519 52.632 0.00 0.00 31.13 5.36
3246 5604 5.178067 CCTTTGTTTTTCCTGTGATGCAATC 59.822 40.000 0.00 0.00 45.83 2.67
3247 5605 5.058490 CCTTTGTTTTTCCTGTGATGCAAT 58.942 37.500 0.00 0.00 0.00 3.56
3248 5606 4.161189 TCCTTTGTTTTTCCTGTGATGCAA 59.839 37.500 0.00 0.00 0.00 4.08
3249 5607 3.703556 TCCTTTGTTTTTCCTGTGATGCA 59.296 39.130 0.00 0.00 0.00 3.96
3250 5608 4.320608 TCCTTTGTTTTTCCTGTGATGC 57.679 40.909 0.00 0.00 0.00 3.91
3251 5609 6.752168 AGAATCCTTTGTTTTTCCTGTGATG 58.248 36.000 0.00 0.00 0.00 3.07
3252 5610 6.983906 AGAATCCTTTGTTTTTCCTGTGAT 57.016 33.333 0.00 0.00 0.00 3.06
3253 5611 6.790232 AAGAATCCTTTGTTTTTCCTGTGA 57.210 33.333 0.00 0.00 0.00 3.58
3254 5612 7.267857 AGAAAGAATCCTTTGTTTTTCCTGTG 58.732 34.615 0.00 0.00 42.30 3.66
3255 5613 7.423844 AGAAAGAATCCTTTGTTTTTCCTGT 57.576 32.000 0.00 0.00 42.30 4.00
3256 5614 9.468532 CTTAGAAAGAATCCTTTGTTTTTCCTG 57.531 33.333 0.00 0.00 42.30 3.86
3257 5615 9.421399 TCTTAGAAAGAATCCTTTGTTTTTCCT 57.579 29.630 0.00 0.00 42.30 3.36
3258 5616 9.684448 CTCTTAGAAAGAATCCTTTGTTTTTCC 57.316 33.333 0.00 0.00 42.30 3.13
3259 5617 9.684448 CCTCTTAGAAAGAATCCTTTGTTTTTC 57.316 33.333 0.00 0.00 42.30 2.29
3260 5618 9.201989 ACCTCTTAGAAAGAATCCTTTGTTTTT 57.798 29.630 0.00 0.00 42.30 1.94
3261 5619 8.768501 ACCTCTTAGAAAGAATCCTTTGTTTT 57.231 30.769 0.00 0.00 42.30 2.43
3262 5620 8.768501 AACCTCTTAGAAAGAATCCTTTGTTT 57.231 30.769 0.00 0.00 42.30 2.83
3263 5621 8.633561 CAAACCTCTTAGAAAGAATCCTTTGTT 58.366 33.333 0.00 0.00 42.30 2.83
3264 5622 7.998964 TCAAACCTCTTAGAAAGAATCCTTTGT 59.001 33.333 0.00 0.00 42.30 2.83
3265 5623 8.396272 TCAAACCTCTTAGAAAGAATCCTTTG 57.604 34.615 0.00 0.00 42.30 2.77
3266 5624 8.221251 ACTCAAACCTCTTAGAAAGAATCCTTT 58.779 33.333 0.00 0.00 44.73 3.11
3267 5625 7.663493 CACTCAAACCTCTTAGAAAGAATCCTT 59.337 37.037 0.00 0.00 37.02 3.36
3268 5626 7.164803 CACTCAAACCTCTTAGAAAGAATCCT 58.835 38.462 0.00 0.00 37.02 3.24
3269 5627 6.372937 CCACTCAAACCTCTTAGAAAGAATCC 59.627 42.308 0.00 0.00 37.02 3.01
3270 5628 7.162082 TCCACTCAAACCTCTTAGAAAGAATC 58.838 38.462 0.00 0.00 37.02 2.52
3271 5629 7.079451 TCCACTCAAACCTCTTAGAAAGAAT 57.921 36.000 0.00 0.00 37.02 2.40
3272 5630 6.494666 TCCACTCAAACCTCTTAGAAAGAA 57.505 37.500 0.00 0.00 37.02 2.52
3273 5631 6.270000 TCATCCACTCAAACCTCTTAGAAAGA 59.730 38.462 0.00 0.00 35.87 2.52
3274 5632 6.467677 TCATCCACTCAAACCTCTTAGAAAG 58.532 40.000 0.00 0.00 0.00 2.62
3275 5633 6.433847 TCATCCACTCAAACCTCTTAGAAA 57.566 37.500 0.00 0.00 0.00 2.52
3276 5634 6.627087 ATCATCCACTCAAACCTCTTAGAA 57.373 37.500 0.00 0.00 0.00 2.10
3277 5635 7.921041 ATATCATCCACTCAAACCTCTTAGA 57.079 36.000 0.00 0.00 0.00 2.10
3288 5646 9.782900 TCCCATAGTATTTATATCATCCACTCA 57.217 33.333 0.00 0.00 0.00 3.41
3304 5662 9.490083 ACTTCTTTGTACTACTTCCCATAGTAT 57.510 33.333 0.00 0.00 37.44 2.12
3305 5663 8.890410 ACTTCTTTGTACTACTTCCCATAGTA 57.110 34.615 0.00 0.00 34.66 1.82
3306 5664 7.093421 GGACTTCTTTGTACTACTTCCCATAGT 60.093 40.741 0.00 0.00 36.79 2.12
3307 5665 7.124448 AGGACTTCTTTGTACTACTTCCCATAG 59.876 40.741 0.00 0.00 27.52 2.23
3308 5666 6.958192 AGGACTTCTTTGTACTACTTCCCATA 59.042 38.462 0.00 0.00 27.52 2.74
3309 5667 5.785940 AGGACTTCTTTGTACTACTTCCCAT 59.214 40.000 0.00 0.00 27.52 4.00
3310 5668 5.152934 AGGACTTCTTTGTACTACTTCCCA 58.847 41.667 0.00 0.00 27.52 4.37
3311 5669 5.741962 AGGACTTCTTTGTACTACTTCCC 57.258 43.478 0.00 0.00 27.52 3.97
3312 5670 7.178097 TCCTAAGGACTTCTTTGTACTACTTCC 59.822 40.741 0.00 0.00 36.93 3.46
3313 5671 8.120140 TCCTAAGGACTTCTTTGTACTACTTC 57.880 38.462 0.00 0.00 36.93 3.01
3314 5672 8.488308 TTCCTAAGGACTTCTTTGTACTACTT 57.512 34.615 0.00 0.00 36.93 2.24
3315 5673 8.488308 TTTCCTAAGGACTTCTTTGTACTACT 57.512 34.615 0.00 0.00 36.93 2.57
3316 5674 9.551734 TTTTTCCTAAGGACTTCTTTGTACTAC 57.448 33.333 0.00 0.00 36.93 2.73
3354 5712 9.921637 GTTGGTTGTTTGATTCATAGGATTAAA 57.078 29.630 0.00 0.00 0.00 1.52
3355 5713 9.083422 TGTTGGTTGTTTGATTCATAGGATTAA 57.917 29.630 0.00 0.00 0.00 1.40
3356 5714 8.519526 GTGTTGGTTGTTTGATTCATAGGATTA 58.480 33.333 0.00 0.00 0.00 1.75
3357 5715 7.015098 TGTGTTGGTTGTTTGATTCATAGGATT 59.985 33.333 0.00 0.00 0.00 3.01
3358 5716 6.493115 TGTGTTGGTTGTTTGATTCATAGGAT 59.507 34.615 0.00 0.00 0.00 3.24
3359 5717 5.830457 TGTGTTGGTTGTTTGATTCATAGGA 59.170 36.000 0.00 0.00 0.00 2.94
3360 5718 6.083098 TGTGTTGGTTGTTTGATTCATAGG 57.917 37.500 0.00 0.00 0.00 2.57
3361 5719 6.016360 TCCTGTGTTGGTTGTTTGATTCATAG 60.016 38.462 0.00 0.00 0.00 2.23
3362 5720 5.830457 TCCTGTGTTGGTTGTTTGATTCATA 59.170 36.000 0.00 0.00 0.00 2.15
3363 5721 4.648762 TCCTGTGTTGGTTGTTTGATTCAT 59.351 37.500 0.00 0.00 0.00 2.57
3364 5722 4.019858 TCCTGTGTTGGTTGTTTGATTCA 58.980 39.130 0.00 0.00 0.00 2.57
3365 5723 4.647424 TCCTGTGTTGGTTGTTTGATTC 57.353 40.909 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.