Multiple sequence alignment - TraesCS5B01G108400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G108400 chr5B 100.000 2945 0 0 1 2945 147428199 147431143 0.000000e+00 5439.0
1 TraesCS5B01G108400 chr5A 93.074 1415 50 19 540 1945 169304511 169303136 0.000000e+00 2026.0
2 TraesCS5B01G108400 chr5A 89.022 1002 32 31 1960 2906 169303085 169302107 0.000000e+00 1170.0
3 TraesCS5B01G108400 chr5A 81.769 373 48 13 75 440 169305596 169305237 7.980000e-76 294.0
4 TraesCS5B01G108400 chr5A 87.166 187 21 3 454 640 573618294 573618477 2.970000e-50 209.0
5 TraesCS5B01G108400 chr5D 93.841 1104 37 14 851 1945 135649268 135650349 0.000000e+00 1633.0
6 TraesCS5B01G108400 chr5D 91.822 966 40 23 1964 2906 135650408 135651357 0.000000e+00 1310.0
7 TraesCS5B01G108400 chr5D 86.364 110 6 6 742 851 135649127 135649227 8.630000e-21 111.0
8 TraesCS5B01G108400 chr2B 76.308 325 50 13 136 456 49299336 49299035 6.580000e-32 148.0
9 TraesCS5B01G108400 chr2B 74.928 347 68 12 119 459 415997279 415996946 1.100000e-29 141.0
10 TraesCS5B01G108400 chr2B 85.612 139 12 4 119 255 24954473 24954605 3.960000e-29 139.0
11 TraesCS5B01G108400 chr7B 76.370 292 56 11 123 408 99109274 99108990 8.510000e-31 145.0
12 TraesCS5B01G108400 chr7B 97.368 38 1 0 570 607 496802033 496802070 6.810000e-07 65.8
13 TraesCS5B01G108400 chr4B 76.995 213 41 6 198 408 635682528 635682734 6.670000e-22 115.0
14 TraesCS5B01G108400 chr4A 78.947 114 17 7 351 459 743789531 743789420 1.460000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G108400 chr5B 147428199 147431143 2944 False 5439.000000 5439 100.000000 1 2945 1 chr5B.!!$F1 2944
1 TraesCS5B01G108400 chr5A 169302107 169305596 3489 True 1163.333333 2026 87.955000 75 2906 3 chr5A.!!$R1 2831
2 TraesCS5B01G108400 chr5D 135649127 135651357 2230 False 1018.000000 1633 90.675667 742 2906 3 chr5D.!!$F1 2164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.028770 CACCACAAACGCACATTCGT 59.971 50.0 0.00 0.0 45.58 3.85 F
1027 1711 0.178767 CGCCACCAAGATCATGAGGA 59.821 55.0 11.89 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 2229 1.009900 GGAGTAGACGATGACGCCG 60.010 63.158 0.0 0.0 43.96 6.46 R
2446 3233 0.463204 CAGCGTCAGGATGTGGATCT 59.537 55.000 0.0 0.0 37.40 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.545841 GGCAGGTCCTACCAAAAAGG 58.454 55.000 2.87 0.00 41.95 3.11
32 33 3.780902 CCAAAAAGGTCAAGTTCACCAC 58.219 45.455 0.00 0.00 36.23 4.16
33 34 3.194542 CCAAAAAGGTCAAGTTCACCACA 59.805 43.478 0.00 0.00 36.23 4.17
34 35 4.322349 CCAAAAAGGTCAAGTTCACCACAA 60.322 41.667 0.00 0.00 36.23 3.33
35 36 5.233988 CAAAAAGGTCAAGTTCACCACAAA 58.766 37.500 0.00 0.00 36.23 2.83
36 37 4.450082 AAAGGTCAAGTTCACCACAAAC 57.550 40.909 0.00 0.00 36.23 2.93
37 38 2.014128 AGGTCAAGTTCACCACAAACG 58.986 47.619 0.00 0.00 36.23 3.60
38 39 1.533129 GGTCAAGTTCACCACAAACGC 60.533 52.381 0.00 0.00 33.63 4.84
39 40 1.131504 GTCAAGTTCACCACAAACGCA 59.868 47.619 0.00 0.00 0.00 5.24
40 41 1.131504 TCAAGTTCACCACAAACGCAC 59.868 47.619 0.00 0.00 0.00 5.34
41 42 1.135546 CAAGTTCACCACAAACGCACA 60.136 47.619 0.00 0.00 0.00 4.57
42 43 1.388547 AGTTCACCACAAACGCACAT 58.611 45.000 0.00 0.00 0.00 3.21
43 44 1.748493 AGTTCACCACAAACGCACATT 59.252 42.857 0.00 0.00 0.00 2.71
44 45 2.116366 GTTCACCACAAACGCACATTC 58.884 47.619 0.00 0.00 0.00 2.67
45 46 0.306228 TCACCACAAACGCACATTCG 59.694 50.000 0.00 0.00 0.00 3.34
46 47 0.028770 CACCACAAACGCACATTCGT 59.971 50.000 0.00 0.00 45.58 3.85
52 53 4.278956 ACGCACATTCGTTCCCTC 57.721 55.556 0.00 0.00 40.07 4.30
53 54 1.736645 ACGCACATTCGTTCCCTCG 60.737 57.895 0.00 0.00 40.07 4.63
54 55 1.736645 CGCACATTCGTTCCCTCGT 60.737 57.895 0.00 0.00 0.00 4.18
55 56 1.683790 CGCACATTCGTTCCCTCGTC 61.684 60.000 0.00 0.00 0.00 4.20
56 57 1.359459 GCACATTCGTTCCCTCGTCC 61.359 60.000 0.00 0.00 0.00 4.79
57 58 0.246635 CACATTCGTTCCCTCGTCCT 59.753 55.000 0.00 0.00 0.00 3.85
58 59 0.246635 ACATTCGTTCCCTCGTCCTG 59.753 55.000 0.00 0.00 0.00 3.86
59 60 0.246635 CATTCGTTCCCTCGTCCTGT 59.753 55.000 0.00 0.00 0.00 4.00
60 61 0.974383 ATTCGTTCCCTCGTCCTGTT 59.026 50.000 0.00 0.00 0.00 3.16
61 62 0.754472 TTCGTTCCCTCGTCCTGTTT 59.246 50.000 0.00 0.00 0.00 2.83
62 63 0.754472 TCGTTCCCTCGTCCTGTTTT 59.246 50.000 0.00 0.00 0.00 2.43
63 64 1.962807 TCGTTCCCTCGTCCTGTTTTA 59.037 47.619 0.00 0.00 0.00 1.52
64 65 2.564062 TCGTTCCCTCGTCCTGTTTTAT 59.436 45.455 0.00 0.00 0.00 1.40
65 66 2.671396 CGTTCCCTCGTCCTGTTTTATG 59.329 50.000 0.00 0.00 0.00 1.90
66 67 3.671716 GTTCCCTCGTCCTGTTTTATGT 58.328 45.455 0.00 0.00 0.00 2.29
67 68 4.618927 CGTTCCCTCGTCCTGTTTTATGTA 60.619 45.833 0.00 0.00 0.00 2.29
68 69 4.460948 TCCCTCGTCCTGTTTTATGTAC 57.539 45.455 0.00 0.00 0.00 2.90
69 70 3.119388 TCCCTCGTCCTGTTTTATGTACG 60.119 47.826 0.00 0.00 0.00 3.67
70 71 3.367703 CCCTCGTCCTGTTTTATGTACGT 60.368 47.826 0.00 0.00 0.00 3.57
71 72 3.611113 CCTCGTCCTGTTTTATGTACGTG 59.389 47.826 0.00 0.00 0.00 4.49
72 73 4.478699 CTCGTCCTGTTTTATGTACGTGA 58.521 43.478 0.00 0.00 0.00 4.35
73 74 4.478699 TCGTCCTGTTTTATGTACGTGAG 58.521 43.478 0.00 0.00 0.00 3.51
131 132 2.671070 GCGCCAAAGGAAAATACACAGG 60.671 50.000 0.00 0.00 0.00 4.00
159 160 1.305802 ATGCTCCACCCCTGTACGA 60.306 57.895 0.00 0.00 0.00 3.43
172 173 7.027161 CACCCCTGTACGAAAATTAAATTCAG 58.973 38.462 0.00 0.00 0.00 3.02
229 230 6.306199 TGAAATCTTGGGATCTCAAACTTGA 58.694 36.000 9.80 3.42 27.27 3.02
245 246 5.615925 AACTTGAGTGTCCAACTTACTCT 57.384 39.130 0.00 0.00 40.07 3.24
259 260 9.403583 TCCAACTTACTCTTGTATGAAGTTTTT 57.596 29.630 0.00 0.00 29.68 1.94
260 261 9.450807 CCAACTTACTCTTGTATGAAGTTTTTG 57.549 33.333 0.00 0.00 29.68 2.44
275 277 7.947282 TGAAGTTTTTGTAGAAAATACCAGGG 58.053 34.615 0.00 0.00 31.07 4.45
278 280 7.948357 AGTTTTTGTAGAAAATACCAGGGAAC 58.052 34.615 0.00 0.00 31.07 3.62
284 286 5.687166 AGAAAATACCAGGGAACGTATCA 57.313 39.130 0.00 0.00 0.00 2.15
287 289 4.402056 AATACCAGGGAACGTATCAGTG 57.598 45.455 0.00 0.00 0.00 3.66
289 291 0.902531 CCAGGGAACGTATCAGTGGT 59.097 55.000 0.00 0.00 31.01 4.16
298 300 5.333875 GGAACGTATCAGTGGTGAAGAAAAC 60.334 44.000 0.00 0.00 35.88 2.43
302 305 5.007234 CGTATCAGTGGTGAAGAAAACACAA 59.993 40.000 0.00 0.00 39.65 3.33
305 308 4.035091 TCAGTGGTGAAGAAAACACAATCG 59.965 41.667 0.00 0.00 39.65 3.34
306 309 3.315191 AGTGGTGAAGAAAACACAATCGG 59.685 43.478 0.00 0.00 39.65 4.18
320 323 6.834168 ACACAATCGGAACTAAAATCCATT 57.166 33.333 0.00 0.00 36.74 3.16
327 330 9.855021 AATCGGAACTAAAATCCATTAAAACAG 57.145 29.630 0.00 0.00 36.74 3.16
328 331 8.398878 TCGGAACTAAAATCCATTAAAACAGT 57.601 30.769 0.00 0.00 36.74 3.55
330 333 9.471084 CGGAACTAAAATCCATTAAAACAGTTT 57.529 29.630 0.00 0.00 36.74 2.66
382 385 6.831769 TCTCTTTTTGTCGCTGATATGTTTC 58.168 36.000 0.00 0.00 0.00 2.78
426 429 9.846248 AATTTCACTCTAAAATAGATTGTGCAC 57.154 29.630 10.75 10.75 36.96 4.57
428 431 6.472016 TCACTCTAAAATAGATTGTGCACCA 58.528 36.000 15.69 2.96 36.96 4.17
437 440 3.233507 AGATTGTGCACCAAGGTTTCAT 58.766 40.909 15.69 0.00 36.25 2.57
440 443 5.481473 AGATTGTGCACCAAGGTTTCATATT 59.519 36.000 15.69 0.00 36.25 1.28
441 444 5.543507 TTGTGCACCAAGGTTTCATATTT 57.456 34.783 15.69 0.00 0.00 1.40
442 445 5.132897 TGTGCACCAAGGTTTCATATTTC 57.867 39.130 15.69 0.00 0.00 2.17
443 446 4.586421 TGTGCACCAAGGTTTCATATTTCA 59.414 37.500 15.69 0.00 0.00 2.69
446 449 6.146021 GTGCACCAAGGTTTCATATTTCAAAG 59.854 38.462 5.22 0.00 0.00 2.77
449 452 5.178061 CCAAGGTTTCATATTTCAAAGCCC 58.822 41.667 0.00 0.00 31.62 5.19
452 1057 5.332743 AGGTTTCATATTTCAAAGCCCAGA 58.667 37.500 0.00 0.00 31.62 3.86
457 1062 9.002600 GTTTCATATTTCAAAGCCCAGATTTTT 57.997 29.630 0.00 0.00 0.00 1.94
479 1084 4.265056 ACGAACCTGCACCACCCC 62.265 66.667 0.00 0.00 0.00 4.95
480 1085 4.263572 CGAACCTGCACCACCCCA 62.264 66.667 0.00 0.00 0.00 4.96
481 1086 2.197324 GAACCTGCACCACCCCAA 59.803 61.111 0.00 0.00 0.00 4.12
482 1087 2.123468 AACCTGCACCACCCCAAC 60.123 61.111 0.00 0.00 0.00 3.77
485 1090 2.912025 CTGCACCACCCCAACACC 60.912 66.667 0.00 0.00 0.00 4.16
486 1091 3.425014 TGCACCACCCCAACACCT 61.425 61.111 0.00 0.00 0.00 4.00
490 1097 0.768622 CACCACCCCAACACCTCTAA 59.231 55.000 0.00 0.00 0.00 2.10
502 1109 7.235606 CCCCAACACCTCTAAGATAGATAATGA 59.764 40.741 0.00 0.00 33.66 2.57
506 1113 8.644374 ACACCTCTAAGATAGATAATGAGGTC 57.356 38.462 8.58 0.00 46.61 3.85
509 1116 6.601613 CCTCTAAGATAGATAATGAGGTCGCT 59.398 42.308 0.00 0.00 36.00 4.93
515 1122 2.105477 AGATAATGAGGTCGCTTGCCAT 59.895 45.455 0.00 0.00 0.00 4.40
525 1132 3.307059 GGTCGCTTGCCATCCTAAGATAT 60.307 47.826 0.00 0.00 0.00 1.63
529 1136 4.518249 GCTTGCCATCCTAAGATATACCC 58.482 47.826 0.00 0.00 0.00 3.69
531 1138 5.514834 GCTTGCCATCCTAAGATATACCCAA 60.515 44.000 0.00 0.00 0.00 4.12
534 1141 5.014123 TGCCATCCTAAGATATACCCAAAGG 59.986 44.000 0.00 0.00 40.04 3.11
564 1171 1.316706 CGAGCTCGTTCCTTCCCTCT 61.317 60.000 27.79 0.00 34.11 3.69
582 1211 1.351017 TCTGGCCGTTCTTTCCTTCAT 59.649 47.619 0.00 0.00 0.00 2.57
583 1212 1.470098 CTGGCCGTTCTTTCCTTCATG 59.530 52.381 0.00 0.00 0.00 3.07
585 1214 0.881118 GCCGTTCTTTCCTTCATGCA 59.119 50.000 0.00 0.00 0.00 3.96
603 1232 2.690497 TGCAAAATTCGACTGACCCAAA 59.310 40.909 0.00 0.00 0.00 3.28
611 1241 5.934935 TTCGACTGACCCAAATTCTAAAC 57.065 39.130 0.00 0.00 0.00 2.01
615 1245 5.120830 CGACTGACCCAAATTCTAAACTCAG 59.879 44.000 0.00 0.00 0.00 3.35
616 1246 6.187727 ACTGACCCAAATTCTAAACTCAGA 57.812 37.500 0.00 0.00 0.00 3.27
617 1247 6.784031 ACTGACCCAAATTCTAAACTCAGAT 58.216 36.000 0.00 0.00 0.00 2.90
639 1269 9.920133 CAGATGACTTACATATAGCTATTGTGT 57.080 33.333 21.10 21.10 39.56 3.72
665 1295 7.223260 TGAGAAAACGACTTAGACATAAGGA 57.777 36.000 0.00 0.00 42.38 3.36
666 1296 7.313646 TGAGAAAACGACTTAGACATAAGGAG 58.686 38.462 0.00 0.00 42.38 3.69
670 1300 4.528920 ACGACTTAGACATAAGGAGCTCT 58.471 43.478 14.64 0.00 42.38 4.09
671 1301 4.577283 ACGACTTAGACATAAGGAGCTCTC 59.423 45.833 14.64 3.76 42.38 3.20
680 1310 3.453679 GGAGCTCTCCGGCGACTT 61.454 66.667 14.64 0.00 40.36 3.01
681 1311 2.119655 GGAGCTCTCCGGCGACTTA 61.120 63.158 14.64 0.00 40.36 2.24
682 1312 1.664321 GGAGCTCTCCGGCGACTTAA 61.664 60.000 14.64 0.00 40.36 1.85
694 1324 3.181533 CGGCGACTTAAAACTAGCAGAAC 60.182 47.826 0.00 0.00 0.00 3.01
767 1400 1.578423 GAGTTGTTGGAGCAGCAGC 59.422 57.895 0.00 0.00 42.56 5.25
768 1401 1.860484 GAGTTGTTGGAGCAGCAGCC 61.860 60.000 0.00 0.00 43.56 4.85
769 1402 2.195411 TTGTTGGAGCAGCAGCCA 59.805 55.556 0.00 3.02 43.56 4.75
770 1403 1.900016 TTGTTGGAGCAGCAGCCAG 60.900 57.895 7.05 0.00 43.56 4.85
771 1404 3.745803 GTTGGAGCAGCAGCCAGC 61.746 66.667 7.05 6.31 43.56 4.85
821 1455 4.141551 ACATGCAGCAGGAGAGAAATGATA 60.142 41.667 15.39 0.00 0.00 2.15
822 1456 3.801698 TGCAGCAGGAGAGAAATGATAC 58.198 45.455 0.00 0.00 0.00 2.24
975 1659 2.361104 GCCAAGACCATCGGCCAA 60.361 61.111 2.24 0.00 40.07 4.52
976 1660 1.754234 GCCAAGACCATCGGCCAAT 60.754 57.895 2.24 0.00 40.07 3.16
977 1661 0.465460 GCCAAGACCATCGGCCAATA 60.465 55.000 2.24 0.00 40.07 1.90
978 1662 1.819305 GCCAAGACCATCGGCCAATAT 60.819 52.381 2.24 0.00 40.07 1.28
979 1663 2.154462 CCAAGACCATCGGCCAATATC 58.846 52.381 2.24 0.00 0.00 1.63
980 1664 1.800586 CAAGACCATCGGCCAATATCG 59.199 52.381 2.24 0.00 0.00 2.92
981 1665 0.321671 AGACCATCGGCCAATATCGG 59.678 55.000 2.24 0.00 0.00 4.18
1027 1711 0.178767 CGCCACCAAGATCATGAGGA 59.821 55.000 11.89 0.00 0.00 3.71
1147 1831 3.554342 CTGCATCCCTCCTCCCGG 61.554 72.222 0.00 0.00 0.00 5.73
1860 2547 4.135747 TGTTCTTGACACTGTCATCACA 57.864 40.909 12.71 12.15 42.40 3.58
1862 2549 5.852827 TGTTCTTGACACTGTCATCACATA 58.147 37.500 12.71 0.00 42.40 2.29
1945 2632 2.449137 AGGGGATTTCATTGCCTGAG 57.551 50.000 0.00 0.00 34.68 3.35
1946 2633 1.642762 AGGGGATTTCATTGCCTGAGT 59.357 47.619 0.00 0.00 34.68 3.41
1948 2635 3.464833 AGGGGATTTCATTGCCTGAGTAT 59.535 43.478 0.00 0.00 34.68 2.12
1949 2636 3.823304 GGGGATTTCATTGCCTGAGTATC 59.177 47.826 0.00 0.00 34.68 2.24
1988 2715 2.730382 TGATGGTGATGCTCATTGCTT 58.270 42.857 0.00 0.00 43.37 3.91
2059 2796 8.594550 ACATAGGTGCTGTTAGTATAATTAGGG 58.405 37.037 0.00 0.00 0.00 3.53
2060 2797 8.812972 CATAGGTGCTGTTAGTATAATTAGGGA 58.187 37.037 0.00 0.00 0.00 4.20
2120 2859 7.475137 TCTGTAAATAATTGGAAAACTGGGG 57.525 36.000 0.00 0.00 0.00 4.96
2121 2860 7.013834 TCTGTAAATAATTGGAAAACTGGGGT 58.986 34.615 0.00 0.00 0.00 4.95
2122 2861 7.511028 TCTGTAAATAATTGGAAAACTGGGGTT 59.489 33.333 0.00 0.00 37.24 4.11
2319 3058 0.604578 GCAATCTGGCAGCTTTCCAA 59.395 50.000 10.34 0.00 32.41 3.53
2353 3121 5.982516 TCAAAGTACAAACATGTGCCAAATC 59.017 36.000 0.00 0.00 0.00 2.17
2446 3233 5.957771 AGCTGTATTGTCTGAGGGATAAA 57.042 39.130 0.00 0.00 0.00 1.40
2619 3410 0.251297 TCCACATCAACTTGGCTGGG 60.251 55.000 0.00 0.00 32.37 4.45
2712 3503 2.543037 TTTTTCCTAGGCCCCAATCC 57.457 50.000 2.96 0.00 0.00 3.01
2713 3504 1.388174 TTTTCCTAGGCCCCAATCCA 58.612 50.000 2.96 0.00 0.00 3.41
2714 3505 1.388174 TTTCCTAGGCCCCAATCCAA 58.612 50.000 2.96 0.00 0.00 3.53
2715 3506 0.926293 TTCCTAGGCCCCAATCCAAG 59.074 55.000 2.96 0.00 0.00 3.61
2756 3558 7.690301 GCTCTCAGATCTGGGAAATATGGTAAA 60.690 40.741 25.22 0.00 40.00 2.01
2805 3607 3.868077 GTGCCACAATGCTACAAAAACAA 59.132 39.130 0.00 0.00 0.00 2.83
2815 3617 8.487176 CAATGCTACAAAAACAACTTCCAATAC 58.513 33.333 0.00 0.00 0.00 1.89
2853 3656 0.394352 GTACCATTGGAGCACAGGGG 60.394 60.000 10.37 0.00 31.64 4.79
2906 3709 7.223387 ACAAACGGTGACACTAAAAGTTAGTAG 59.777 37.037 5.39 0.00 0.00 2.57
2907 3710 5.776744 ACGGTGACACTAAAAGTTAGTAGG 58.223 41.667 5.39 0.00 0.00 3.18
2908 3711 5.302823 ACGGTGACACTAAAAGTTAGTAGGT 59.697 40.000 5.39 0.00 0.00 3.08
2909 3712 5.860716 CGGTGACACTAAAAGTTAGTAGGTC 59.139 44.000 5.39 9.84 0.00 3.85
2910 3713 6.515531 CGGTGACACTAAAAGTTAGTAGGTCA 60.516 42.308 13.28 13.28 31.16 4.02
2911 3714 7.384477 GGTGACACTAAAAGTTAGTAGGTCAT 58.616 38.462 17.37 0.00 33.77 3.06
2912 3715 8.526147 GGTGACACTAAAAGTTAGTAGGTCATA 58.474 37.037 17.37 2.06 33.77 2.15
2913 3716 9.351570 GTGACACTAAAAGTTAGTAGGTCATAC 57.648 37.037 17.37 8.06 33.77 2.39
2914 3717 9.081204 TGACACTAAAAGTTAGTAGGTCATACA 57.919 33.333 13.28 0.00 36.79 2.29
2915 3718 9.570488 GACACTAAAAGTTAGTAGGTCATACAG 57.430 37.037 11.10 0.00 36.79 2.74
2916 3719 9.086758 ACACTAAAAGTTAGTAGGTCATACAGT 57.913 33.333 0.51 0.00 36.79 3.55
2938 3741 9.583765 ACAGTACTAATAACAAAGTAGCTAAGC 57.416 33.333 0.00 0.00 0.00 3.09
2939 3742 9.804758 CAGTACTAATAACAAAGTAGCTAAGCT 57.195 33.333 0.00 0.00 43.41 3.74
2944 3747 9.774742 CTAATAACAAAGTAGCTAAGCTTTTGG 57.225 33.333 3.20 0.00 39.34 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.545841 CCTTTTTGGTAGGACCTGCC 58.454 55.000 21.14 21.14 39.58 4.85
11 12 3.194542 TGTGGTGAACTTGACCTTTTTGG 59.805 43.478 0.00 0.00 42.93 3.28
12 13 4.448537 TGTGGTGAACTTGACCTTTTTG 57.551 40.909 0.00 0.00 34.26 2.44
13 14 5.234752 GTTTGTGGTGAACTTGACCTTTTT 58.765 37.500 0.00 0.00 34.26 1.94
14 15 4.617298 CGTTTGTGGTGAACTTGACCTTTT 60.617 41.667 0.00 0.00 34.26 2.27
15 16 3.119637 CGTTTGTGGTGAACTTGACCTTT 60.120 43.478 0.00 0.00 34.26 3.11
16 17 2.422127 CGTTTGTGGTGAACTTGACCTT 59.578 45.455 0.00 0.00 34.26 3.50
17 18 2.014128 CGTTTGTGGTGAACTTGACCT 58.986 47.619 0.00 0.00 34.26 3.85
18 19 1.533129 GCGTTTGTGGTGAACTTGACC 60.533 52.381 0.00 0.00 0.00 4.02
19 20 1.131504 TGCGTTTGTGGTGAACTTGAC 59.868 47.619 0.00 0.00 0.00 3.18
20 21 1.131504 GTGCGTTTGTGGTGAACTTGA 59.868 47.619 0.00 0.00 0.00 3.02
21 22 1.135546 TGTGCGTTTGTGGTGAACTTG 60.136 47.619 0.00 0.00 0.00 3.16
22 23 1.169577 TGTGCGTTTGTGGTGAACTT 58.830 45.000 0.00 0.00 0.00 2.66
23 24 1.388547 ATGTGCGTTTGTGGTGAACT 58.611 45.000 0.00 0.00 0.00 3.01
24 25 2.116366 GAATGTGCGTTTGTGGTGAAC 58.884 47.619 0.00 0.00 0.00 3.18
25 26 1.268285 CGAATGTGCGTTTGTGGTGAA 60.268 47.619 0.00 0.00 0.00 3.18
26 27 0.306228 CGAATGTGCGTTTGTGGTGA 59.694 50.000 0.00 0.00 0.00 4.02
27 28 0.028770 ACGAATGTGCGTTTGTGGTG 59.971 50.000 0.00 0.00 42.71 4.17
28 29 2.399856 ACGAATGTGCGTTTGTGGT 58.600 47.368 0.00 0.00 42.71 4.16
36 37 1.683790 GACGAGGGAACGAATGTGCG 61.684 60.000 0.00 0.00 37.03 5.34
37 38 1.359459 GGACGAGGGAACGAATGTGC 61.359 60.000 0.00 0.00 37.03 4.57
38 39 0.246635 AGGACGAGGGAACGAATGTG 59.753 55.000 0.00 0.00 37.03 3.21
39 40 0.246635 CAGGACGAGGGAACGAATGT 59.753 55.000 0.00 0.00 37.03 2.71
40 41 0.246635 ACAGGACGAGGGAACGAATG 59.753 55.000 0.00 0.00 37.03 2.67
41 42 0.974383 AACAGGACGAGGGAACGAAT 59.026 50.000 0.00 0.00 37.03 3.34
42 43 0.754472 AAACAGGACGAGGGAACGAA 59.246 50.000 0.00 0.00 37.03 3.85
43 44 0.754472 AAAACAGGACGAGGGAACGA 59.246 50.000 0.00 0.00 37.03 3.85
44 45 2.443887 TAAAACAGGACGAGGGAACG 57.556 50.000 0.00 0.00 39.31 3.95
45 46 3.671716 ACATAAAACAGGACGAGGGAAC 58.328 45.455 0.00 0.00 0.00 3.62
46 47 4.618927 CGTACATAAAACAGGACGAGGGAA 60.619 45.833 0.00 0.00 32.20 3.97
47 48 3.119388 CGTACATAAAACAGGACGAGGGA 60.119 47.826 0.00 0.00 32.20 4.20
48 49 3.184541 CGTACATAAAACAGGACGAGGG 58.815 50.000 0.00 0.00 32.20 4.30
49 50 3.611113 CACGTACATAAAACAGGACGAGG 59.389 47.826 4.01 0.00 34.54 4.63
50 51 4.478699 TCACGTACATAAAACAGGACGAG 58.521 43.478 4.01 0.00 34.54 4.18
51 52 4.478699 CTCACGTACATAAAACAGGACGA 58.521 43.478 4.01 0.00 34.54 4.20
52 53 3.060363 GCTCACGTACATAAAACAGGACG 59.940 47.826 0.00 0.00 36.42 4.79
53 54 3.991773 TGCTCACGTACATAAAACAGGAC 59.008 43.478 0.00 0.00 0.00 3.85
54 55 4.260139 TGCTCACGTACATAAAACAGGA 57.740 40.909 0.00 0.00 0.00 3.86
55 56 4.629634 TGATGCTCACGTACATAAAACAGG 59.370 41.667 0.00 0.00 0.00 4.00
56 57 5.725042 GCTGATGCTCACGTACATAAAACAG 60.725 44.000 0.00 0.00 36.03 3.16
57 58 4.092821 GCTGATGCTCACGTACATAAAACA 59.907 41.667 0.00 0.00 36.03 2.83
58 59 4.092821 TGCTGATGCTCACGTACATAAAAC 59.907 41.667 0.00 0.00 40.48 2.43
59 60 4.249661 TGCTGATGCTCACGTACATAAAA 58.750 39.130 0.00 0.00 40.48 1.52
60 61 3.855858 TGCTGATGCTCACGTACATAAA 58.144 40.909 0.00 0.00 40.48 1.40
61 62 3.518634 TGCTGATGCTCACGTACATAA 57.481 42.857 0.00 0.00 40.48 1.90
62 63 3.518634 TTGCTGATGCTCACGTACATA 57.481 42.857 0.00 0.00 40.48 2.29
63 64 2.385013 TTGCTGATGCTCACGTACAT 57.615 45.000 0.00 0.00 40.48 2.29
64 65 2.270923 GATTGCTGATGCTCACGTACA 58.729 47.619 0.00 0.00 40.48 2.90
65 66 1.256376 CGATTGCTGATGCTCACGTAC 59.744 52.381 0.00 0.00 40.48 3.67
66 67 1.134175 TCGATTGCTGATGCTCACGTA 59.866 47.619 0.00 0.00 40.48 3.57
67 68 0.108662 TCGATTGCTGATGCTCACGT 60.109 50.000 0.00 0.00 40.48 4.49
68 69 1.001624 TTCGATTGCTGATGCTCACG 58.998 50.000 0.00 0.00 40.48 4.35
69 70 2.871022 AGATTCGATTGCTGATGCTCAC 59.129 45.455 0.00 0.00 40.48 3.51
70 71 2.870411 CAGATTCGATTGCTGATGCTCA 59.130 45.455 4.26 0.00 40.48 4.26
71 72 2.871022 ACAGATTCGATTGCTGATGCTC 59.129 45.455 14.24 0.00 40.48 4.26
72 73 2.915349 ACAGATTCGATTGCTGATGCT 58.085 42.857 14.24 0.00 40.48 3.79
73 74 3.360533 CAACAGATTCGATTGCTGATGC 58.639 45.455 14.24 0.00 40.20 3.91
114 115 4.321230 GGTGCTCCTGTGTATTTTCCTTTG 60.321 45.833 0.00 0.00 0.00 2.77
116 117 3.074538 AGGTGCTCCTGTGTATTTTCCTT 59.925 43.478 6.51 0.00 43.33 3.36
140 141 1.153369 CGTACAGGGGTGGAGCATG 60.153 63.158 0.00 0.00 0.00 4.06
141 142 0.907704 TTCGTACAGGGGTGGAGCAT 60.908 55.000 0.00 0.00 0.00 3.79
142 143 1.122632 TTTCGTACAGGGGTGGAGCA 61.123 55.000 0.00 0.00 0.00 4.26
143 144 0.035739 TTTTCGTACAGGGGTGGAGC 59.964 55.000 0.00 0.00 0.00 4.70
146 147 5.907866 ATTTAATTTTCGTACAGGGGTGG 57.092 39.130 0.00 0.00 0.00 4.61
147 148 6.915349 TGAATTTAATTTTCGTACAGGGGTG 58.085 36.000 0.00 0.00 0.00 4.61
148 149 6.943718 TCTGAATTTAATTTTCGTACAGGGGT 59.056 34.615 0.00 0.00 0.00 4.95
199 200 7.601705 TTGAGATCCCAAGATTTCAGTTTTT 57.398 32.000 0.00 0.00 42.66 1.94
203 204 5.885465 AGTTTGAGATCCCAAGATTTCAGT 58.115 37.500 0.00 0.00 42.66 3.41
229 230 6.665992 TCATACAAGAGTAAGTTGGACACT 57.334 37.500 0.00 0.00 37.30 3.55
233 234 8.974060 AAAACTTCATACAAGAGTAAGTTGGA 57.026 30.769 0.00 0.00 32.15 3.53
234 235 9.450807 CAAAAACTTCATACAAGAGTAAGTTGG 57.549 33.333 0.00 0.00 32.15 3.77
259 260 4.895668 ACGTTCCCTGGTATTTTCTACA 57.104 40.909 0.00 0.00 0.00 2.74
260 261 6.576185 TGATACGTTCCCTGGTATTTTCTAC 58.424 40.000 0.00 0.00 29.86 2.59
261 262 6.381994 ACTGATACGTTCCCTGGTATTTTCTA 59.618 38.462 0.00 0.00 29.86 2.10
263 264 5.293569 CACTGATACGTTCCCTGGTATTTTC 59.706 44.000 0.00 0.00 29.86 2.29
274 276 3.587797 TCTTCACCACTGATACGTTCC 57.412 47.619 0.00 0.00 0.00 3.62
275 277 5.235616 TGTTTTCTTCACCACTGATACGTTC 59.764 40.000 0.00 0.00 0.00 3.95
278 280 4.509970 TGTGTTTTCTTCACCACTGATACG 59.490 41.667 0.00 0.00 35.25 3.06
284 286 3.315191 CCGATTGTGTTTTCTTCACCACT 59.685 43.478 0.00 0.00 35.25 4.00
287 289 4.036380 AGTTCCGATTGTGTTTTCTTCACC 59.964 41.667 0.00 0.00 35.25 4.02
289 291 6.928979 TTAGTTCCGATTGTGTTTTCTTCA 57.071 33.333 0.00 0.00 0.00 3.02
298 300 9.632807 TTTTAATGGATTTTAGTTCCGATTGTG 57.367 29.630 0.00 0.00 35.94 3.33
302 305 9.020731 ACTGTTTTAATGGATTTTAGTTCCGAT 57.979 29.630 0.00 0.00 35.94 4.18
358 361 6.128282 GGAAACATATCAGCGACAAAAAGAGA 60.128 38.462 0.00 0.00 0.00 3.10
359 362 6.024049 GGAAACATATCAGCGACAAAAAGAG 58.976 40.000 0.00 0.00 0.00 2.85
360 363 5.705441 AGGAAACATATCAGCGACAAAAAGA 59.295 36.000 0.00 0.00 0.00 2.52
361 364 5.796935 CAGGAAACATATCAGCGACAAAAAG 59.203 40.000 0.00 0.00 0.00 2.27
363 366 5.000591 TCAGGAAACATATCAGCGACAAAA 58.999 37.500 0.00 0.00 0.00 2.44
367 370 7.426929 AAATATCAGGAAACATATCAGCGAC 57.573 36.000 0.00 0.00 0.00 5.19
368 371 8.450578 AAAAATATCAGGAAACATATCAGCGA 57.549 30.769 0.00 0.00 0.00 4.93
408 411 6.245408 ACCTTGGTGCACAATCTATTTTAGA 58.755 36.000 20.43 0.00 38.65 2.10
409 412 6.515272 ACCTTGGTGCACAATCTATTTTAG 57.485 37.500 20.43 0.00 38.65 1.85
410 413 6.909550 AACCTTGGTGCACAATCTATTTTA 57.090 33.333 20.43 0.00 38.65 1.52
422 425 5.798125 TTGAAATATGAAACCTTGGTGCA 57.202 34.783 0.00 0.00 0.00 4.57
426 429 5.178061 GGGCTTTGAAATATGAAACCTTGG 58.822 41.667 0.00 0.00 0.00 3.61
428 431 5.779771 TCTGGGCTTTGAAATATGAAACCTT 59.220 36.000 0.00 0.00 0.00 3.50
457 1062 2.029964 GGTGCAGGTTCGTCGGAA 59.970 61.111 0.00 0.00 0.00 4.30
462 1067 4.265056 GGGGTGGTGCAGGTTCGT 62.265 66.667 0.00 0.00 0.00 3.85
485 1090 7.624360 AGCGACCTCATTATCTATCTTAGAG 57.376 40.000 0.00 0.00 38.38 2.43
486 1091 7.575909 GCAAGCGACCTCATTATCTATCTTAGA 60.576 40.741 0.00 0.00 39.50 2.10
490 1097 4.322349 GGCAAGCGACCTCATTATCTATCT 60.322 45.833 0.00 0.00 0.00 1.98
502 1109 0.179000 CTTAGGATGGCAAGCGACCT 59.821 55.000 0.00 0.00 35.11 3.85
506 1113 4.184629 GGTATATCTTAGGATGGCAAGCG 58.815 47.826 0.00 0.00 33.71 4.68
509 1116 6.467194 CCTTTGGGTATATCTTAGGATGGCAA 60.467 42.308 0.00 0.00 33.71 4.52
515 1122 3.914435 GGCCCTTTGGGTATATCTTAGGA 59.086 47.826 4.42 0.00 46.51 2.94
525 1132 1.993391 CGGAGAGGCCCTTTGGGTA 60.993 63.158 0.00 0.00 46.51 3.69
551 1158 2.269241 GGCCAGAGGGAAGGAACG 59.731 66.667 0.00 0.00 35.59 3.95
552 1159 2.125766 AACGGCCAGAGGGAAGGAAC 62.126 60.000 2.24 0.00 35.59 3.62
564 1171 1.533625 CATGAAGGAAAGAACGGCCA 58.466 50.000 2.24 0.00 0.00 5.36
582 1211 1.974265 TGGGTCAGTCGAATTTTGCA 58.026 45.000 0.00 0.00 0.00 4.08
583 1212 3.363341 TTTGGGTCAGTCGAATTTTGC 57.637 42.857 0.00 0.00 0.00 3.68
585 1214 7.519032 TTAGAATTTGGGTCAGTCGAATTTT 57.481 32.000 0.00 0.00 30.71 1.82
637 1267 9.569167 CTTATGTCTAAGTCGTTTTCTCATACA 57.431 33.333 0.00 0.00 31.45 2.29
639 1269 8.963725 TCCTTATGTCTAAGTCGTTTTCTCATA 58.036 33.333 0.00 0.00 33.78 2.15
640 1270 7.837863 TCCTTATGTCTAAGTCGTTTTCTCAT 58.162 34.615 0.00 0.00 33.78 2.90
665 1295 0.606604 TTTTAAGTCGCCGGAGAGCT 59.393 50.000 8.65 6.30 0.00 4.09
666 1296 0.720027 GTTTTAAGTCGCCGGAGAGC 59.280 55.000 8.65 3.80 0.00 4.09
670 1300 1.273048 TGCTAGTTTTAAGTCGCCGGA 59.727 47.619 5.05 0.00 0.00 5.14
671 1301 1.659098 CTGCTAGTTTTAAGTCGCCGG 59.341 52.381 0.00 0.00 0.00 6.13
672 1302 2.602878 TCTGCTAGTTTTAAGTCGCCG 58.397 47.619 0.00 0.00 0.00 6.46
673 1303 3.124806 GGTTCTGCTAGTTTTAAGTCGCC 59.875 47.826 0.00 0.00 0.00 5.54
674 1304 3.744426 TGGTTCTGCTAGTTTTAAGTCGC 59.256 43.478 0.00 0.00 0.00 5.19
675 1305 6.481954 AATGGTTCTGCTAGTTTTAAGTCG 57.518 37.500 0.00 0.00 0.00 4.18
711 1341 9.688592 GCTTCTATCCAGGAATTCATTTATTTG 57.311 33.333 7.93 0.00 0.00 2.32
729 1362 2.035193 TCCTGCGATCTGTGCTTCTATC 59.965 50.000 0.00 0.00 0.00 2.08
767 1400 1.302033 GATATCGCCCACCTGCTGG 60.302 63.158 8.29 8.29 40.26 4.85
768 1401 0.882042 GTGATATCGCCCACCTGCTG 60.882 60.000 4.86 0.00 0.00 4.41
769 1402 1.337384 TGTGATATCGCCCACCTGCT 61.337 55.000 13.60 0.00 32.61 4.24
770 1403 0.250467 ATGTGATATCGCCCACCTGC 60.250 55.000 13.60 0.00 32.61 4.85
771 1404 1.609061 GGATGTGATATCGCCCACCTG 60.609 57.143 13.60 0.00 32.61 4.00
772 1405 0.687354 GGATGTGATATCGCCCACCT 59.313 55.000 13.60 0.00 32.61 4.00
773 1406 0.687354 AGGATGTGATATCGCCCACC 59.313 55.000 13.60 12.94 32.61 4.61
821 1455 0.620030 TGTGGCAGGCATCATGTAGT 59.380 50.000 0.00 0.00 0.00 2.73
822 1456 1.977056 ATGTGGCAGGCATCATGTAG 58.023 50.000 0.00 0.00 0.00 2.74
942 1620 1.388547 TGGCTTGCTTTCAACGTCTT 58.611 45.000 0.00 0.00 0.00 3.01
946 1630 1.600413 GGTCTTGGCTTGCTTTCAACG 60.600 52.381 0.00 0.00 0.00 4.10
1083 1767 4.214327 GAGAAGGGGAGCGCGAGG 62.214 72.222 12.10 0.00 0.00 4.63
1147 1831 4.219999 GAGGCTGAGGGAGAGCGC 62.220 72.222 0.00 0.00 37.32 5.92
1200 1884 1.048160 GGAGGAAGAGGAGCTGGGAG 61.048 65.000 0.00 0.00 0.00 4.30
1542 2229 1.009900 GGAGTAGACGATGACGCCG 60.010 63.158 0.00 0.00 43.96 6.46
1642 2329 2.359107 CAGCAGCGCCTTGAGGAA 60.359 61.111 2.29 0.00 37.39 3.36
1851 2538 4.714308 TGGTAGACCATGTATGTGATGACA 59.286 41.667 0.00 0.00 42.01 3.58
1890 2577 5.977635 TCCAACAGATCACGAGAATAATGT 58.022 37.500 0.00 0.00 0.00 2.71
1945 2632 7.432059 TCATCATGTGAGAAGTCTGATGATAC 58.568 38.462 8.93 0.00 44.28 2.24
1946 2633 7.592885 TCATCATGTGAGAAGTCTGATGATA 57.407 36.000 8.93 0.00 44.28 2.15
1948 2635 5.927281 TCATCATGTGAGAAGTCTGATGA 57.073 39.130 8.93 8.93 45.93 2.92
1949 2636 5.467063 CCATCATCATGTGAGAAGTCTGATG 59.533 44.000 12.02 12.02 42.80 3.07
1953 2640 4.468868 TCACCATCATCATGTGAGAAGTCT 59.531 41.667 0.00 0.00 40.92 3.24
1954 2641 4.763073 TCACCATCATCATGTGAGAAGTC 58.237 43.478 0.00 0.00 40.92 3.01
1956 2643 4.023963 GCATCACCATCATCATGTGAGAAG 60.024 45.833 0.00 0.00 40.92 2.85
1957 2644 3.881089 GCATCACCATCATCATGTGAGAA 59.119 43.478 0.00 0.00 40.92 2.87
1958 2645 3.135895 AGCATCACCATCATCATGTGAGA 59.864 43.478 0.00 0.00 40.92 3.27
1962 2685 3.570912 TGAGCATCACCATCATCATGT 57.429 42.857 0.00 0.00 42.56 3.21
1998 2725 9.921637 CCAGCATTAACAAAAGGATAAAAACTA 57.078 29.630 0.00 0.00 0.00 2.24
2000 2727 8.601845 ACCAGCATTAACAAAAGGATAAAAAC 57.398 30.769 0.00 0.00 0.00 2.43
2059 2796 1.483827 TCTGATGGACCTGATGCACTC 59.516 52.381 0.00 0.00 0.00 3.51
2060 2797 1.576577 TCTGATGGACCTGATGCACT 58.423 50.000 0.00 0.00 0.00 4.40
2446 3233 0.463204 CAGCGTCAGGATGTGGATCT 59.537 55.000 0.00 0.00 37.40 2.75
2462 3249 4.043200 GCGACTTTGGGTGGCAGC 62.043 66.667 8.47 8.47 46.59 5.25
2652 3443 7.563888 TGCTAGTACGTACTTATCATTGAGT 57.436 36.000 31.58 7.20 37.73 3.41
2663 3454 4.243270 CCAAAAAGCTGCTAGTACGTACT 58.757 43.478 29.62 29.62 40.24 2.73
2664 3455 3.992427 ACCAAAAAGCTGCTAGTACGTAC 59.008 43.478 18.10 18.10 0.00 3.67
2665 3456 4.261578 ACCAAAAAGCTGCTAGTACGTA 57.738 40.909 0.90 0.00 0.00 3.57
2666 3457 3.121738 ACCAAAAAGCTGCTAGTACGT 57.878 42.857 0.90 0.00 0.00 3.57
2667 3458 4.689345 AGTTACCAAAAAGCTGCTAGTACG 59.311 41.667 0.90 0.00 0.00 3.67
2699 3490 1.152673 GGCTTGGATTGGGGCCTAG 60.153 63.158 0.84 0.00 41.20 3.02
2700 3491 1.513975 TTGGCTTGGATTGGGGCCTA 61.514 55.000 0.84 0.00 44.36 3.93
2701 3492 2.185533 ATTGGCTTGGATTGGGGCCT 62.186 55.000 0.84 0.00 44.36 5.19
2703 3494 1.689243 GGATTGGCTTGGATTGGGGC 61.689 60.000 0.00 0.00 0.00 5.80
2705 3496 1.570803 TTGGATTGGCTTGGATTGGG 58.429 50.000 0.00 0.00 0.00 4.12
2706 3497 2.103601 GGATTGGATTGGCTTGGATTGG 59.896 50.000 0.00 0.00 0.00 3.16
2707 3498 2.767394 TGGATTGGATTGGCTTGGATTG 59.233 45.455 0.00 0.00 0.00 2.67
2708 3499 3.119009 TGGATTGGATTGGCTTGGATT 57.881 42.857 0.00 0.00 0.00 3.01
2709 3500 2.852714 TGGATTGGATTGGCTTGGAT 57.147 45.000 0.00 0.00 0.00 3.41
2710 3501 2.390696 CATGGATTGGATTGGCTTGGA 58.609 47.619 0.00 0.00 0.00 3.53
2711 3502 1.202604 GCATGGATTGGATTGGCTTGG 60.203 52.381 0.00 0.00 0.00 3.61
2712 3503 1.760613 AGCATGGATTGGATTGGCTTG 59.239 47.619 0.00 0.00 0.00 4.01
2713 3504 2.037144 GAGCATGGATTGGATTGGCTT 58.963 47.619 0.00 0.00 0.00 4.35
2714 3505 1.217183 AGAGCATGGATTGGATTGGCT 59.783 47.619 0.00 0.00 0.00 4.75
2715 3506 1.612463 GAGAGCATGGATTGGATTGGC 59.388 52.381 0.00 0.00 0.00 4.52
2805 3607 3.655777 TCCAAGGTCCTTGTATTGGAAGT 59.344 43.478 26.52 0.00 46.18 3.01
2815 3617 3.790089 ACCTAAAGTCCAAGGTCCTTG 57.210 47.619 22.89 22.89 42.60 3.61
2853 3656 2.680370 CCTAGTCCCCAGGCCCAAC 61.680 68.421 0.00 0.00 0.00 3.77
2912 3715 9.583765 GCTTAGCTACTTTGTTATTAGTACTGT 57.416 33.333 5.39 0.00 0.00 3.55
2913 3716 9.804758 AGCTTAGCTACTTTGTTATTAGTACTG 57.195 33.333 4.30 0.00 36.99 2.74
2918 3721 9.774742 CCAAAAGCTTAGCTACTTTGTTATTAG 57.225 33.333 22.17 8.66 38.25 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.