Multiple sequence alignment - TraesCS5B01G108200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G108200 chr5B 100.000 6954 0 0 1 6954 147163256 147156303 0.000000e+00 12842.0
1 TraesCS5B01G108200 chr5B 94.921 571 29 0 1432 2002 477512094 477512664 0.000000e+00 894.0
2 TraesCS5B01G108200 chr5B 94.762 210 9 2 1437 1644 605012956 605012747 6.730000e-85 326.0
3 TraesCS5B01G108200 chr5B 90.385 52 1 4 162 211 319895315 319895364 1.620000e-06 65.8
4 TraesCS5B01G108200 chr5D 93.449 2656 108 22 4331 6954 135523702 135521081 0.000000e+00 3880.0
5 TraesCS5B01G108200 chr5D 95.904 293 9 1 991 1283 135524622 135524333 8.160000e-129 472.0
6 TraesCS5B01G108200 chr5D 91.870 123 6 1 1315 1433 135524338 135524216 1.200000e-37 169.0
7 TraesCS5B01G108200 chr5D 91.818 110 8 1 4177 4286 135523811 135523703 1.210000e-32 152.0
8 TraesCS5B01G108200 chr5A 93.374 2626 120 16 4177 6772 169622319 169624920 0.000000e+00 3836.0
9 TraesCS5B01G108200 chr5A 94.866 448 18 2 991 1434 169621449 169621895 0.000000e+00 695.0
10 TraesCS5B01G108200 chr5A 83.765 425 38 20 2913 3315 169621899 169622314 2.370000e-99 374.0
11 TraesCS5B01G108200 chr5A 97.945 146 3 0 6809 6954 169624924 169625069 3.220000e-63 254.0
12 TraesCS5B01G108200 chr2D 96.824 1480 41 2 1433 2906 577575827 577577306 0.000000e+00 2468.0
13 TraesCS5B01G108200 chr2D 77.931 145 24 8 680 821 476702462 476702323 4.470000e-12 84.2
14 TraesCS5B01G108200 chr1B 95.125 1477 68 3 1434 2906 535345089 535346565 0.000000e+00 2326.0
15 TraesCS5B01G108200 chr7A 94.652 935 50 0 1437 2371 602064410 602063476 0.000000e+00 1450.0
16 TraesCS5B01G108200 chr7A 82.171 129 12 8 695 821 306272630 306272749 4.440000e-17 100.0
17 TraesCS5B01G108200 chr7A 77.778 153 29 5 842 989 671220967 671220815 9.610000e-14 89.8
18 TraesCS5B01G108200 chr7B 93.526 865 43 7 3320 4175 290087466 290086606 0.000000e+00 1275.0
19 TraesCS5B01G108200 chr7B 92.114 875 53 6 3316 4174 92895786 92896660 0.000000e+00 1219.0
20 TraesCS5B01G108200 chr7B 91.945 869 60 3 3316 4174 114251836 114252704 0.000000e+00 1208.0
21 TraesCS5B01G108200 chr7B 77.150 849 123 41 11 821 653061548 653062363 1.790000e-115 427.0
22 TraesCS5B01G108200 chr7B 81.522 92 8 8 127 211 2126668 2126579 4.500000e-07 67.6
23 TraesCS5B01G108200 chr7B 81.522 92 8 8 127 211 201524596 201524507 4.500000e-07 67.6
24 TraesCS5B01G108200 chr6B 93.986 848 40 6 3316 4155 436424839 436423995 0.000000e+00 1273.0
25 TraesCS5B01G108200 chr6B 91.839 870 58 9 3316 4175 338203544 338204410 0.000000e+00 1201.0
26 TraesCS5B01G108200 chr6B 84.010 838 81 25 11 822 536695010 536695820 0.000000e+00 756.0
27 TraesCS5B01G108200 chr6B 79.221 154 16 14 674 818 668675150 668675004 7.430000e-15 93.5
28 TraesCS5B01G108200 chr4B 93.326 869 47 3 3316 4174 452689537 452688670 0.000000e+00 1273.0
29 TraesCS5B01G108200 chr4B 95.417 611 25 1 1437 2047 575810121 575809514 0.000000e+00 970.0
30 TraesCS5B01G108200 chr4B 80.833 120 18 5 158 276 467281164 467281049 9.610000e-14 89.8
31 TraesCS5B01G108200 chr4B 95.122 41 0 2 851 889 103326691 103326731 5.820000e-06 63.9
32 TraesCS5B01G108200 chr3B 92.882 871 46 12 3316 4174 240612749 240613615 0.000000e+00 1251.0
33 TraesCS5B01G108200 chr3B 92.742 868 52 4 3316 4174 692947334 692948199 0.000000e+00 1243.0
34 TraesCS5B01G108200 chr3B 96.081 740 27 2 1433 2172 102745642 102746379 0.000000e+00 1205.0
35 TraesCS5B01G108200 chr3B 92.958 355 20 3 2168 2518 102751478 102751831 4.810000e-141 512.0
36 TraesCS5B01G108200 chr3B 79.116 249 40 10 45 288 27383631 27383872 2.010000e-35 161.0
37 TraesCS5B01G108200 chr3B 85.870 92 7 6 833 919 25514728 25514818 7.430000e-15 93.5
38 TraesCS5B01G108200 chr3B 79.412 136 20 8 692 821 802607316 802607449 9.610000e-14 89.8
39 TraesCS5B01G108200 chr2B 92.051 868 58 4 3319 4178 557745344 557744480 0.000000e+00 1210.0
40 TraesCS5B01G108200 chr2B 78.882 161 23 10 839 992 761892997 761892841 1.600000e-16 99.0
41 TraesCS5B01G108200 chr2B 86.207 87 8 4 836 918 782119527 782119613 2.670000e-14 91.6
42 TraesCS5B01G108200 chr2B 77.551 147 19 13 676 821 312201700 312201567 7.480000e-10 76.8
43 TraesCS5B01G108200 chr2B 76.316 152 22 13 678 821 154242778 154242923 1.250000e-07 69.4
44 TraesCS5B01G108200 chr2A 95.355 732 25 3 1433 2164 66079454 66080176 0.000000e+00 1155.0
45 TraesCS5B01G108200 chr2A 94.624 93 4 1 1432 1524 762851588 762851497 7.270000e-30 143.0
46 TraesCS5B01G108200 chr4A 89.845 453 23 8 1437 1887 100551870 100552301 1.690000e-155 560.0
47 TraesCS5B01G108200 chr4A 82.222 135 16 8 144 276 83743854 83743982 7.370000e-20 110.0
48 TraesCS5B01G108200 chr3D 80.952 168 27 4 11 177 104301179 104301016 2.040000e-25 128.0
49 TraesCS5B01G108200 chr7D 82.667 150 12 14 672 815 11939632 11939773 3.410000e-23 121.0
50 TraesCS5B01G108200 chr7D 79.452 146 23 5 851 991 232635140 232634997 5.740000e-16 97.1
51 TraesCS5B01G108200 chr6A 78.736 174 25 11 652 821 2905647 2905482 9.540000e-19 106.0
52 TraesCS5B01G108200 chr6A 87.013 77 7 3 836 909 74998022 74997946 4.470000e-12 84.2
53 TraesCS5B01G108200 chr4D 80.672 119 18 5 158 276 380257427 380257314 3.460000e-13 87.9
54 TraesCS5B01G108200 chr3A 76.836 177 25 15 652 821 9494719 9494886 1.240000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G108200 chr5B 147156303 147163256 6953 True 12842.00 12842 100.00000 1 6954 1 chr5B.!!$R1 6953
1 TraesCS5B01G108200 chr5B 477512094 477512664 570 False 894.00 894 94.92100 1432 2002 1 chr5B.!!$F2 570
2 TraesCS5B01G108200 chr5D 135521081 135524622 3541 True 1168.25 3880 93.26025 991 6954 4 chr5D.!!$R1 5963
3 TraesCS5B01G108200 chr5A 169621449 169625069 3620 False 1289.75 3836 92.48750 991 6954 4 chr5A.!!$F1 5963
4 TraesCS5B01G108200 chr2D 577575827 577577306 1479 False 2468.00 2468 96.82400 1433 2906 1 chr2D.!!$F1 1473
5 TraesCS5B01G108200 chr1B 535345089 535346565 1476 False 2326.00 2326 95.12500 1434 2906 1 chr1B.!!$F1 1472
6 TraesCS5B01G108200 chr7A 602063476 602064410 934 True 1450.00 1450 94.65200 1437 2371 1 chr7A.!!$R1 934
7 TraesCS5B01G108200 chr7B 290086606 290087466 860 True 1275.00 1275 93.52600 3320 4175 1 chr7B.!!$R3 855
8 TraesCS5B01G108200 chr7B 92895786 92896660 874 False 1219.00 1219 92.11400 3316 4174 1 chr7B.!!$F1 858
9 TraesCS5B01G108200 chr7B 114251836 114252704 868 False 1208.00 1208 91.94500 3316 4174 1 chr7B.!!$F2 858
10 TraesCS5B01G108200 chr7B 653061548 653062363 815 False 427.00 427 77.15000 11 821 1 chr7B.!!$F3 810
11 TraesCS5B01G108200 chr6B 436423995 436424839 844 True 1273.00 1273 93.98600 3316 4155 1 chr6B.!!$R1 839
12 TraesCS5B01G108200 chr6B 338203544 338204410 866 False 1201.00 1201 91.83900 3316 4175 1 chr6B.!!$F1 859
13 TraesCS5B01G108200 chr6B 536695010 536695820 810 False 756.00 756 84.01000 11 822 1 chr6B.!!$F2 811
14 TraesCS5B01G108200 chr4B 452688670 452689537 867 True 1273.00 1273 93.32600 3316 4174 1 chr4B.!!$R1 858
15 TraesCS5B01G108200 chr4B 575809514 575810121 607 True 970.00 970 95.41700 1437 2047 1 chr4B.!!$R3 610
16 TraesCS5B01G108200 chr3B 240612749 240613615 866 False 1251.00 1251 92.88200 3316 4174 1 chr3B.!!$F5 858
17 TraesCS5B01G108200 chr3B 692947334 692948199 865 False 1243.00 1243 92.74200 3316 4174 1 chr3B.!!$F6 858
18 TraesCS5B01G108200 chr3B 102745642 102746379 737 False 1205.00 1205 96.08100 1433 2172 1 chr3B.!!$F3 739
19 TraesCS5B01G108200 chr2B 557744480 557745344 864 True 1210.00 1210 92.05100 3319 4178 1 chr2B.!!$R2 859
20 TraesCS5B01G108200 chr2A 66079454 66080176 722 False 1155.00 1155 95.35500 1433 2164 1 chr2A.!!$F1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 1006 0.038159 CCATCTTACCTCCCGATCGC 60.038 60.0 10.32 0.0 0.00 4.58 F
2406 2487 0.037590 TAGCAGACGCCACCCAATTT 59.962 50.0 0.00 0.0 39.83 1.82 F
3084 3195 0.249615 ATGATGGATCACCGCTCACG 60.250 55.0 0.00 0.0 40.03 4.35 F
3087 3198 0.465705 ATGGATCACCGCTCACGAAT 59.534 50.0 0.00 0.0 43.93 3.34 F
4393 4529 0.693622 TTAAACCCCGCATCACAGGA 59.306 50.0 0.00 0.0 0.00 3.86 F
5384 5532 0.385390 GTGCACCCTCCAAGTGTTTG 59.615 55.0 5.22 0.0 37.56 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2443 2524 0.042131 ACCGAATCCAGTCTGGGGTA 59.958 55.0 19.11 0.0 38.32 3.69 R
4381 4517 0.734889 GAACCATTCCTGTGATGCGG 59.265 55.0 0.00 0.0 0.00 5.69 R
4960 5107 0.250467 CGCATCCCCCACCTATTCAG 60.250 60.0 0.00 0.0 0.00 3.02 R
4993 5140 2.525105 TTCCAAAGCCCCATCCTAAC 57.475 50.0 0.00 0.0 0.00 2.34 R
5886 6035 2.268730 GCACAGCTGCCTTTGATAAC 57.731 50.0 15.27 0.0 37.45 1.89 R
6493 6658 1.086696 CATGGTGGTAGCGTTCCAAG 58.913 55.0 7.23 0.9 36.68 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 91 5.692654 ACCGGGAACAAAATTTAAAATCACG 59.307 36.000 6.32 9.55 32.39 4.35
91 94 7.277917 CGGGAACAAAATTTAAAATCACGAAC 58.722 34.615 10.53 0.00 34.36 3.95
187 191 8.272176 GCGAACAATTTTTGAATATGTGAACAA 58.728 29.630 0.00 0.00 0.00 2.83
440 511 9.980780 AACCTGAACATTTTTAAAAATTGAACG 57.019 25.926 20.92 13.04 36.52 3.95
472 543 7.956420 AAAGGACGAATATTTTTGGGAAAAC 57.044 32.000 0.00 0.00 37.56 2.43
475 546 7.320399 AGGACGAATATTTTTGGGAAAACATC 58.680 34.615 0.00 0.00 37.56 3.06
536 607 8.600449 ATCCTCGAACAATTTTTAAAAATGCA 57.400 26.923 23.34 0.00 38.53 3.96
538 609 8.883731 TCCTCGAACAATTTTTAAAAATGCAAA 58.116 25.926 23.34 9.25 38.53 3.68
560 632 9.727627 GCAAATTTGTTTTGGATTAATGAACAA 57.272 25.926 19.03 2.77 44.10 2.83
578 650 9.956720 AATGAACAATTTTTGAAAACACAAACA 57.043 22.222 0.00 0.00 39.08 2.83
580 652 9.956720 TGAACAATTTTTGAAAACACAAACATT 57.043 22.222 0.00 0.00 39.26 2.71
626 698 9.143631 AGCACAGATATTTTTGACAATTTTAGC 57.856 29.630 0.00 0.00 0.00 3.09
627 699 8.924691 GCACAGATATTTTTGACAATTTTAGCA 58.075 29.630 0.00 0.00 0.00 3.49
629 701 9.979578 ACAGATATTTTTGACAATTTTAGCACA 57.020 25.926 0.00 0.00 0.00 4.57
636 708 9.565213 TTTTTGACAATTTTAGCACAATTTTGG 57.435 25.926 0.00 0.00 0.00 3.28
637 709 6.857777 TGACAATTTTAGCACAATTTTGGG 57.142 33.333 0.00 0.00 33.81 4.12
638 710 6.586344 TGACAATTTTAGCACAATTTTGGGA 58.414 32.000 0.00 0.00 31.80 4.37
639 711 7.050377 TGACAATTTTAGCACAATTTTGGGAA 58.950 30.769 0.00 0.00 31.80 3.97
640 712 7.011857 TGACAATTTTAGCACAATTTTGGGAAC 59.988 33.333 0.00 0.00 31.80 3.62
641 713 6.825721 ACAATTTTAGCACAATTTTGGGAACA 59.174 30.769 0.00 0.00 31.80 3.18
642 714 7.501892 ACAATTTTAGCACAATTTTGGGAACAT 59.498 29.630 0.00 0.00 42.32 2.71
643 715 6.857777 TTTTAGCACAATTTTGGGAACATG 57.142 33.333 0.00 0.00 42.32 3.21
644 716 5.798125 TTAGCACAATTTTGGGAACATGA 57.202 34.783 0.00 0.00 42.32 3.07
645 717 4.686191 AGCACAATTTTGGGAACATGAA 57.314 36.364 0.00 0.00 42.32 2.57
646 718 4.379652 AGCACAATTTTGGGAACATGAAC 58.620 39.130 0.00 0.00 42.32 3.18
647 719 4.101430 AGCACAATTTTGGGAACATGAACT 59.899 37.500 0.00 0.00 42.32 3.01
648 720 4.815846 GCACAATTTTGGGAACATGAACTT 59.184 37.500 0.00 0.00 42.32 2.66
649 721 5.296531 GCACAATTTTGGGAACATGAACTTT 59.703 36.000 0.00 0.00 42.32 2.66
650 722 6.717413 CACAATTTTGGGAACATGAACTTTG 58.283 36.000 0.00 0.00 42.32 2.77
651 723 6.538021 CACAATTTTGGGAACATGAACTTTGA 59.462 34.615 0.00 0.00 42.32 2.69
652 724 7.065563 CACAATTTTGGGAACATGAACTTTGAA 59.934 33.333 0.00 0.00 42.32 2.69
653 725 7.609532 ACAATTTTGGGAACATGAACTTTGAAA 59.390 29.630 0.00 0.00 42.32 2.69
654 726 8.623030 CAATTTTGGGAACATGAACTTTGAAAT 58.377 29.630 0.00 0.00 42.32 2.17
655 727 9.844257 AATTTTGGGAACATGAACTTTGAAATA 57.156 25.926 0.00 0.00 42.32 1.40
656 728 9.844257 ATTTTGGGAACATGAACTTTGAAATAA 57.156 25.926 0.00 0.00 42.32 1.40
657 729 8.885494 TTTGGGAACATGAACTTTGAAATAAG 57.115 30.769 0.00 0.00 42.32 1.73
658 730 7.831691 TGGGAACATGAACTTTGAAATAAGA 57.168 32.000 0.00 0.00 33.40 2.10
659 731 8.243961 TGGGAACATGAACTTTGAAATAAGAA 57.756 30.769 0.00 0.00 33.40 2.52
660 732 8.700051 TGGGAACATGAACTTTGAAATAAGAAA 58.300 29.630 0.00 0.00 33.40 2.52
661 733 9.541143 GGGAACATGAACTTTGAAATAAGAAAA 57.459 29.630 0.00 0.00 0.00 2.29
783 855 9.554724 GAAAAATCAAAAAGAAACAGGAAAACC 57.445 29.630 0.00 0.00 0.00 3.27
784 856 6.902224 AATCAAAAAGAAACAGGAAAACCG 57.098 33.333 0.00 0.00 0.00 4.44
785 857 4.749976 TCAAAAAGAAACAGGAAAACCGG 58.250 39.130 0.00 0.00 0.00 5.28
786 858 4.221041 TCAAAAAGAAACAGGAAAACCGGT 59.779 37.500 0.00 0.00 0.00 5.28
787 859 4.811969 AAAAGAAACAGGAAAACCGGTT 57.188 36.364 15.86 15.86 0.00 4.44
788 860 4.380841 AAAGAAACAGGAAAACCGGTTC 57.619 40.909 22.53 9.32 0.00 3.62
789 861 3.007473 AGAAACAGGAAAACCGGTTCA 57.993 42.857 22.53 0.00 0.00 3.18
790 862 2.949644 AGAAACAGGAAAACCGGTTCAG 59.050 45.455 22.53 7.85 0.00 3.02
791 863 1.687563 AACAGGAAAACCGGTTCAGG 58.312 50.000 22.53 11.23 37.30 3.86
793 865 1.770061 ACAGGAAAACCGGTTCAGGTA 59.230 47.619 22.53 0.00 45.21 3.08
794 866 2.173143 ACAGGAAAACCGGTTCAGGTAA 59.827 45.455 22.53 0.00 45.21 2.85
795 867 2.551032 CAGGAAAACCGGTTCAGGTAAC 59.449 50.000 22.53 7.12 45.21 2.50
819 891 6.793492 CTTCTAGAAGGTTCTCAAAACCAG 57.207 41.667 22.67 0.00 42.69 4.00
820 892 6.494666 TTCTAGAAGGTTCTCAAAACCAGA 57.505 37.500 0.00 1.05 42.69 3.86
821 893 6.688073 TCTAGAAGGTTCTCAAAACCAGAT 57.312 37.500 9.45 0.00 42.69 2.90
822 894 7.079451 TCTAGAAGGTTCTCAAAACCAGATT 57.921 36.000 9.45 0.00 42.69 2.40
823 895 7.518188 TCTAGAAGGTTCTCAAAACCAGATTT 58.482 34.615 9.45 0.00 42.69 2.17
824 896 7.998964 TCTAGAAGGTTCTCAAAACCAGATTTT 59.001 33.333 9.45 0.00 42.69 1.82
825 897 7.423844 AGAAGGTTCTCAAAACCAGATTTTT 57.576 32.000 9.45 0.00 42.69 1.94
849 921 6.790232 TTTTTGAGAGTTCCAAAACCAGAT 57.210 33.333 0.00 0.00 41.48 2.90
850 922 7.889873 TTTTTGAGAGTTCCAAAACCAGATA 57.110 32.000 0.00 0.00 41.48 1.98
851 923 7.889873 TTTTGAGAGTTCCAAAACCAGATAA 57.110 32.000 0.00 0.00 38.23 1.75
852 924 7.889873 TTTGAGAGTTCCAAAACCAGATAAA 57.110 32.000 0.00 0.00 35.92 1.40
853 925 6.877611 TGAGAGTTCCAAAACCAGATAAAC 57.122 37.500 0.00 0.00 35.92 2.01
854 926 5.768164 TGAGAGTTCCAAAACCAGATAAACC 59.232 40.000 0.00 0.00 35.92 3.27
855 927 4.760204 AGAGTTCCAAAACCAGATAAACCG 59.240 41.667 0.00 0.00 35.92 4.44
856 928 3.824443 AGTTCCAAAACCAGATAAACCGG 59.176 43.478 0.00 0.00 35.92 5.28
857 929 2.164338 TCCAAAACCAGATAAACCGGC 58.836 47.619 0.00 0.00 0.00 6.13
858 930 2.167662 CCAAAACCAGATAAACCGGCT 58.832 47.619 0.00 0.00 0.00 5.52
859 931 2.094752 CCAAAACCAGATAAACCGGCTG 60.095 50.000 0.00 0.00 0.00 4.85
865 937 3.487563 CAGATAAACCGGCTGGAAAAC 57.512 47.619 21.41 5.53 39.21 2.43
866 938 3.081804 CAGATAAACCGGCTGGAAAACT 58.918 45.455 21.41 7.85 39.21 2.66
867 939 3.127030 CAGATAAACCGGCTGGAAAACTC 59.873 47.826 21.41 8.11 39.21 3.01
868 940 2.943036 TAAACCGGCTGGAAAACTCT 57.057 45.000 21.41 0.00 39.21 3.24
869 941 2.943036 AAACCGGCTGGAAAACTCTA 57.057 45.000 21.41 0.00 39.21 2.43
870 942 2.474410 AACCGGCTGGAAAACTCTAG 57.526 50.000 21.41 0.00 39.21 2.43
871 943 1.640917 ACCGGCTGGAAAACTCTAGA 58.359 50.000 21.41 0.00 39.21 2.43
872 944 1.975680 ACCGGCTGGAAAACTCTAGAA 59.024 47.619 21.41 0.00 39.21 2.10
873 945 2.028020 ACCGGCTGGAAAACTCTAGAAG 60.028 50.000 21.41 0.00 39.21 2.85
874 946 2.622436 CGGCTGGAAAACTCTAGAAGG 58.378 52.381 0.00 0.00 0.00 3.46
875 947 2.028020 CGGCTGGAAAACTCTAGAAGGT 60.028 50.000 0.00 0.00 0.00 3.50
876 948 3.557264 CGGCTGGAAAACTCTAGAAGGTT 60.557 47.826 0.00 0.00 36.04 3.50
877 949 4.004314 GGCTGGAAAACTCTAGAAGGTTC 58.996 47.826 0.00 0.00 32.14 3.62
878 950 4.004314 GCTGGAAAACTCTAGAAGGTTCC 58.996 47.826 16.08 16.08 40.89 3.62
879 951 4.580868 CTGGAAAACTCTAGAAGGTTCCC 58.419 47.826 18.54 13.33 40.27 3.97
880 952 3.977999 TGGAAAACTCTAGAAGGTTCCCA 59.022 43.478 18.54 14.99 40.27 4.37
881 953 4.414182 TGGAAAACTCTAGAAGGTTCCCAA 59.586 41.667 18.54 5.33 40.27 4.12
882 954 5.103855 TGGAAAACTCTAGAAGGTTCCCAAA 60.104 40.000 18.54 4.83 40.27 3.28
883 955 5.831525 GGAAAACTCTAGAAGGTTCCCAAAA 59.168 40.000 13.49 0.00 37.34 2.44
884 956 6.238953 GGAAAACTCTAGAAGGTTCCCAAAAC 60.239 42.308 13.49 0.00 37.34 2.43
885 957 4.004196 ACTCTAGAAGGTTCCCAAAACG 57.996 45.455 0.00 0.00 0.00 3.60
886 958 3.244457 ACTCTAGAAGGTTCCCAAAACGG 60.244 47.826 0.00 0.00 0.00 4.44
887 959 2.974099 TCTAGAAGGTTCCCAAAACGGA 59.026 45.455 0.00 0.00 36.56 4.69
888 960 2.740506 AGAAGGTTCCCAAAACGGAA 57.259 45.000 0.00 0.00 39.67 4.30
889 961 2.583143 AGAAGGTTCCCAAAACGGAAG 58.417 47.619 0.00 0.00 42.63 3.46
891 963 4.935630 GTTCCCAAAACGGAAGCG 57.064 55.556 0.00 0.00 42.63 4.68
892 964 1.371267 GTTCCCAAAACGGAAGCGC 60.371 57.895 0.00 0.00 42.63 5.92
893 965 1.527380 TTCCCAAAACGGAAGCGCT 60.527 52.632 2.64 2.64 36.98 5.92
894 966 1.791103 TTCCCAAAACGGAAGCGCTG 61.791 55.000 12.58 0.00 36.98 5.18
895 967 2.429069 CCAAAACGGAAGCGCTGC 60.429 61.111 12.58 9.65 36.56 5.25
896 968 2.331098 CAAAACGGAAGCGCTGCA 59.669 55.556 19.31 0.00 0.00 4.41
897 969 1.081242 CAAAACGGAAGCGCTGCAT 60.081 52.632 19.31 0.68 0.00 3.96
898 970 1.067199 CAAAACGGAAGCGCTGCATC 61.067 55.000 19.31 8.55 0.00 3.91
899 971 1.514678 AAAACGGAAGCGCTGCATCA 61.515 50.000 19.31 0.00 0.00 3.07
900 972 2.187599 AAACGGAAGCGCTGCATCAC 62.188 55.000 19.31 0.00 0.00 3.06
901 973 4.214383 CGGAAGCGCTGCATCACG 62.214 66.667 19.31 7.63 0.00 4.35
902 974 3.869272 GGAAGCGCTGCATCACGG 61.869 66.667 19.31 0.00 0.00 4.94
903 975 3.121030 GAAGCGCTGCATCACGGT 61.121 61.111 12.58 3.19 42.60 4.83
904 976 1.809619 GAAGCGCTGCATCACGGTA 60.810 57.895 12.58 0.00 39.39 4.02
905 977 1.358725 GAAGCGCTGCATCACGGTAA 61.359 55.000 12.58 0.00 39.39 2.85
906 978 0.744414 AAGCGCTGCATCACGGTAAT 60.744 50.000 12.58 0.00 39.39 1.89
907 979 1.010797 GCGCTGCATCACGGTAATG 60.011 57.895 0.00 0.00 0.00 1.90
908 980 1.643292 CGCTGCATCACGGTAATGG 59.357 57.895 0.00 0.00 0.00 3.16
909 981 1.775039 CGCTGCATCACGGTAATGGG 61.775 60.000 0.00 0.00 0.00 4.00
910 982 2.024918 CTGCATCACGGTAATGGGC 58.975 57.895 0.00 0.00 0.00 5.36
911 983 1.447317 CTGCATCACGGTAATGGGCC 61.447 60.000 0.00 0.00 0.00 5.80
925 997 3.489513 GGCCGGCCCATCTTACCT 61.490 66.667 36.64 0.00 0.00 3.08
926 998 2.111251 GCCGGCCCATCTTACCTC 59.889 66.667 18.11 0.00 0.00 3.85
927 999 2.829592 CCGGCCCATCTTACCTCC 59.170 66.667 0.00 0.00 0.00 4.30
928 1000 2.819284 CCGGCCCATCTTACCTCCC 61.819 68.421 0.00 0.00 0.00 4.30
929 1001 2.829592 GGCCCATCTTACCTCCCG 59.170 66.667 0.00 0.00 0.00 5.14
930 1002 1.764854 GGCCCATCTTACCTCCCGA 60.765 63.158 0.00 0.00 0.00 5.14
931 1003 1.128188 GGCCCATCTTACCTCCCGAT 61.128 60.000 0.00 0.00 0.00 4.18
932 1004 0.321996 GCCCATCTTACCTCCCGATC 59.678 60.000 0.00 0.00 0.00 3.69
933 1005 0.603569 CCCATCTTACCTCCCGATCG 59.396 60.000 8.51 8.51 0.00 3.69
934 1006 0.038159 CCATCTTACCTCCCGATCGC 60.038 60.000 10.32 0.00 0.00 4.58
935 1007 0.962489 CATCTTACCTCCCGATCGCT 59.038 55.000 10.32 0.00 0.00 4.93
936 1008 2.160205 CATCTTACCTCCCGATCGCTA 58.840 52.381 10.32 0.00 0.00 4.26
937 1009 1.893544 TCTTACCTCCCGATCGCTAG 58.106 55.000 10.32 8.74 0.00 3.42
938 1010 0.241481 CTTACCTCCCGATCGCTAGC 59.759 60.000 10.32 4.06 0.00 3.42
939 1011 0.178998 TTACCTCCCGATCGCTAGCT 60.179 55.000 13.93 0.00 0.00 3.32
940 1012 0.605860 TACCTCCCGATCGCTAGCTC 60.606 60.000 13.93 3.34 0.00 4.09
941 1013 1.602323 CCTCCCGATCGCTAGCTCT 60.602 63.158 13.93 0.00 0.00 4.09
942 1014 1.578926 CTCCCGATCGCTAGCTCTG 59.421 63.158 13.93 0.74 0.00 3.35
943 1015 1.152943 TCCCGATCGCTAGCTCTGT 60.153 57.895 13.93 0.00 0.00 3.41
944 1016 1.007964 CCCGATCGCTAGCTCTGTG 60.008 63.158 13.93 0.00 0.00 3.66
945 1017 1.007964 CCGATCGCTAGCTCTGTGG 60.008 63.158 13.93 4.38 0.00 4.17
946 1018 1.007964 CGATCGCTAGCTCTGTGGG 60.008 63.158 13.93 0.00 0.00 4.61
947 1019 1.448119 CGATCGCTAGCTCTGTGGGA 61.448 60.000 13.93 0.52 0.00 4.37
948 1020 0.747255 GATCGCTAGCTCTGTGGGAA 59.253 55.000 13.93 0.00 0.00 3.97
949 1021 1.137086 GATCGCTAGCTCTGTGGGAAA 59.863 52.381 13.93 0.00 0.00 3.13
950 1022 0.246635 TCGCTAGCTCTGTGGGAAAC 59.753 55.000 13.93 0.00 0.00 2.78
965 1037 1.525619 GGAAACCTCGACACTTCAACG 59.474 52.381 0.00 0.00 0.00 4.10
966 1038 0.935196 AAACCTCGACACTTCAACGC 59.065 50.000 0.00 0.00 0.00 4.84
967 1039 0.179094 AACCTCGACACTTCAACGCA 60.179 50.000 0.00 0.00 0.00 5.24
968 1040 0.179094 ACCTCGACACTTCAACGCAA 60.179 50.000 0.00 0.00 0.00 4.85
969 1041 0.934496 CCTCGACACTTCAACGCAAA 59.066 50.000 0.00 0.00 0.00 3.68
970 1042 1.329292 CCTCGACACTTCAACGCAAAA 59.671 47.619 0.00 0.00 0.00 2.44
971 1043 2.032030 CCTCGACACTTCAACGCAAAAT 60.032 45.455 0.00 0.00 0.00 1.82
972 1044 2.966708 CTCGACACTTCAACGCAAAATG 59.033 45.455 0.00 0.00 0.00 2.32
973 1045 1.447938 CGACACTTCAACGCAAAATGC 59.552 47.619 0.00 0.00 40.69 3.56
985 1057 3.698029 GCAAAATGCGTCACATAGGAT 57.302 42.857 0.00 0.00 38.34 3.24
986 1058 4.811555 GCAAAATGCGTCACATAGGATA 57.188 40.909 0.00 0.00 38.34 2.59
987 1059 5.362556 GCAAAATGCGTCACATAGGATAT 57.637 39.130 0.00 0.00 38.34 1.63
988 1060 5.762045 GCAAAATGCGTCACATAGGATATT 58.238 37.500 0.00 0.00 38.34 1.28
989 1061 5.853282 GCAAAATGCGTCACATAGGATATTC 59.147 40.000 0.00 0.00 38.34 1.75
1030 1102 3.893763 CGGCTCGCTCATCGTCCT 61.894 66.667 0.00 0.00 39.67 3.85
1140 1212 1.945819 GCGGCTGACCTTGATTCTTCA 60.946 52.381 0.00 0.00 0.00 3.02
1181 1253 3.430862 GCGGCGATTTGGTGCTCA 61.431 61.111 12.98 0.00 0.00 4.26
1190 1262 3.555518 GATTTGGTGCTCACTTCGTTTC 58.444 45.455 0.00 0.00 0.00 2.78
1343 1419 6.183360 GGTTTTTACACCGAGTTTTAAGGGAA 60.183 38.462 0.00 0.00 0.00 3.97
1358 1434 1.377333 GGAAGGGCGAGAACTTGGG 60.377 63.158 0.00 0.00 0.00 4.12
1366 1442 2.579207 CGAGAACTTGGGATCGCTTA 57.421 50.000 11.46 0.00 0.00 3.09
1411 1487 9.148104 GAGAATTGCTCTTGATTTTTGCTTATT 57.852 29.630 0.00 0.00 40.61 1.40
1435 1511 5.867716 TGATTTCGCTGTTTAGTACTCCTTC 59.132 40.000 0.00 0.00 0.00 3.46
1475 1551 6.389830 TCATGGCGCATTTTATTACTTCAT 57.610 33.333 10.83 0.00 0.00 2.57
1644 1721 5.066505 ACCAAACCAATATCTCGAGCAATTC 59.933 40.000 7.81 0.00 0.00 2.17
1646 1723 3.393800 ACCAATATCTCGAGCAATTCCG 58.606 45.455 7.81 4.93 0.00 4.30
1697 1774 3.335579 GTCATACCACTGACTTGTTCCC 58.664 50.000 0.00 0.00 41.87 3.97
1794 1871 0.982852 ACCATCTCGAAGGGCCATCA 60.983 55.000 6.18 0.00 0.00 3.07
1859 1936 1.615424 TCCAGCCAGGAAGGTACCC 60.615 63.158 8.74 0.00 45.65 3.69
2106 2183 4.700213 GCATCCACCATATATACCAACACC 59.300 45.833 0.00 0.00 0.00 4.16
2141 2218 7.768582 ACAACATCGTGAATACATAAATCAGGA 59.231 33.333 0.00 0.00 40.80 3.86
2199 2276 8.593945 AATATGTTCAACTACAAATGACCCAT 57.406 30.769 0.00 0.00 0.00 4.00
2210 2287 5.819991 ACAAATGACCCATATCTGTCAACT 58.180 37.500 7.68 0.00 44.04 3.16
2240 2317 4.394300 GCATCAGCAATAAACTCACTCAGT 59.606 41.667 0.00 0.00 41.58 3.41
2246 2323 4.702131 GCAATAAACTCACTCAGTCCCAAT 59.298 41.667 0.00 0.00 32.30 3.16
2258 2335 2.226437 CAGTCCCAATTTCAACCAGACG 59.774 50.000 0.00 0.00 0.00 4.18
2295 2372 6.795399 ACACAACTGAATAAAAGGTGAACAG 58.205 36.000 0.00 0.00 35.82 3.16
2404 2485 1.078426 GTAGCAGACGCCACCCAAT 60.078 57.895 0.00 0.00 39.83 3.16
2406 2487 0.037590 TAGCAGACGCCACCCAATTT 59.962 50.000 0.00 0.00 39.83 1.82
2443 2524 5.640147 TGGGACATTCAACTTCCAAAGTAT 58.360 37.500 0.00 0.00 41.91 2.12
2654 2737 3.130869 CCGGCCAAAATTGATCTGATGAA 59.869 43.478 2.24 0.00 0.00 2.57
2682 2765 0.682852 CCCACTGTTCCGTAACTGGA 59.317 55.000 1.30 0.00 38.48 3.86
2683 2766 1.607251 CCCACTGTTCCGTAACTGGAC 60.607 57.143 1.30 0.00 37.89 4.02
2689 2772 2.000447 GTTCCGTAACTGGACTGATGC 59.000 52.381 0.00 0.00 37.89 3.91
2724 2807 1.751924 GTGATTAGAGCACCTCCTCGT 59.248 52.381 0.00 0.00 36.95 4.18
2822 2905 6.822676 CCTATTCTCCATATGCATCCTCTTTC 59.177 42.308 0.19 0.00 0.00 2.62
2906 2989 4.223923 AGCAGCTAGTAAGTTTCCATCAGT 59.776 41.667 0.00 0.00 0.00 3.41
2907 2990 5.422331 AGCAGCTAGTAAGTTTCCATCAGTA 59.578 40.000 0.00 0.00 0.00 2.74
2908 2991 5.520649 GCAGCTAGTAAGTTTCCATCAGTAC 59.479 44.000 0.00 0.00 0.00 2.73
2909 2992 6.628398 GCAGCTAGTAAGTTTCCATCAGTACT 60.628 42.308 0.00 0.00 0.00 2.73
2910 2993 6.975772 CAGCTAGTAAGTTTCCATCAGTACTC 59.024 42.308 0.00 0.00 0.00 2.59
2911 2994 6.097129 AGCTAGTAAGTTTCCATCAGTACTCC 59.903 42.308 0.00 0.00 0.00 3.85
2958 3042 4.463050 ACAAAAGGGATCTGTTTACCCA 57.537 40.909 0.00 0.00 45.43 4.51
2981 3065 6.017605 CCACTTCATAACCAGTAAGATGCATC 60.018 42.308 19.37 19.37 0.00 3.91
2989 3073 4.129380 CCAGTAAGATGCATCCGAATTGA 58.871 43.478 23.06 0.00 0.00 2.57
3005 3089 4.672409 GAATTGATTACCAAAAGCCTCCG 58.328 43.478 0.00 0.00 38.43 4.63
3053 3137 7.012894 TGGAGTCACAAAGAAATAACGAAACAT 59.987 33.333 0.00 0.00 0.00 2.71
3069 3153 6.100004 ACGAAACATCTTTGAGTACGATGAT 58.900 36.000 12.78 0.96 38.27 2.45
3070 3154 6.035005 ACGAAACATCTTTGAGTACGATGATG 59.965 38.462 12.78 14.05 42.65 3.07
3071 3155 6.508563 CGAAACATCTTTGAGTACGATGATGG 60.509 42.308 12.78 2.25 41.95 3.51
3072 3156 5.598416 ACATCTTTGAGTACGATGATGGA 57.402 39.130 12.78 0.00 41.95 3.41
3073 3157 6.166984 ACATCTTTGAGTACGATGATGGAT 57.833 37.500 12.78 0.00 41.95 3.41
3077 3188 4.322080 TTGAGTACGATGATGGATCACC 57.678 45.455 0.00 0.00 40.03 4.02
3084 3195 0.249615 ATGATGGATCACCGCTCACG 60.250 55.000 0.00 0.00 40.03 4.35
3085 3196 1.319614 TGATGGATCACCGCTCACGA 61.320 55.000 0.00 0.00 43.93 4.35
3087 3198 0.465705 ATGGATCACCGCTCACGAAT 59.534 50.000 0.00 0.00 43.93 3.34
3106 3217 7.496529 ACGAATGTGATAAAATGGATGGTAG 57.503 36.000 0.00 0.00 0.00 3.18
3107 3218 7.279615 ACGAATGTGATAAAATGGATGGTAGA 58.720 34.615 0.00 0.00 0.00 2.59
3108 3219 7.939039 ACGAATGTGATAAAATGGATGGTAGAT 59.061 33.333 0.00 0.00 0.00 1.98
3109 3220 9.435688 CGAATGTGATAAAATGGATGGTAGATA 57.564 33.333 0.00 0.00 0.00 1.98
3122 3233 7.815383 TGGATGGTAGATAAGTGGATTTCAAT 58.185 34.615 0.00 0.00 0.00 2.57
3137 3248 7.432252 GTGGATTTCAATCATCGTACCAAAATC 59.568 37.037 2.04 0.00 37.15 2.17
3138 3249 7.121907 TGGATTTCAATCATCGTACCAAAATCA 59.878 33.333 2.04 0.00 37.15 2.57
3174 3285 3.062099 CGTACGCACAGAAATGCTTATGT 59.938 43.478 0.52 0.00 43.80 2.29
3179 3290 3.677601 CACAGAAATGCTTATGTCGCAG 58.322 45.455 0.00 0.00 41.22 5.18
3212 3323 1.185315 ATGAAGCCGGTTTTCCATGG 58.815 50.000 4.97 4.97 40.70 3.66
3227 3338 4.686191 TCCATGGAAGCATGTTTTTGTT 57.314 36.364 13.46 0.00 0.00 2.83
3236 3347 7.147976 GGAAGCATGTTTTTGTTCTGTAGAAT 58.852 34.615 0.00 0.00 36.33 2.40
3250 3361 7.012327 TGTTCTGTAGAATTTGTTCCTCAACAG 59.988 37.037 0.00 0.00 38.81 3.16
3261 3372 3.857157 TCCTCAACAGCTAAGTTGGTT 57.143 42.857 14.87 0.00 46.74 3.67
3263 3374 2.814336 CCTCAACAGCTAAGTTGGTTCC 59.186 50.000 14.87 0.00 46.74 3.62
3281 3392 6.484288 TGGTTCCATATTATATGAAGCCTGG 58.516 40.000 13.29 0.00 0.00 4.45
3283 3394 6.948309 GGTTCCATATTATATGAAGCCTGGTT 59.052 38.462 13.29 0.00 0.00 3.67
3284 3395 7.451566 GGTTCCATATTATATGAAGCCTGGTTT 59.548 37.037 13.29 0.00 0.00 3.27
3285 3396 8.515414 GTTCCATATTATATGAAGCCTGGTTTC 58.485 37.037 15.49 15.49 0.00 2.78
3286 3397 7.175104 TCCATATTATATGAAGCCTGGTTTCC 58.825 38.462 18.89 3.81 0.00 3.13
3302 3413 6.073447 TGGTTTCCTTGGAAGCATCTTATA 57.927 37.500 16.04 0.00 30.34 0.98
3556 3667 2.154462 ACAAAGGATGAACAAGCCTCG 58.846 47.619 0.00 0.00 0.00 4.63
3607 3718 4.757149 GGTGCTGTACTTGTTCTGATTTCT 59.243 41.667 0.00 0.00 0.00 2.52
3615 3729 4.349342 ACTTGTTCTGATTTCTGTCCTCCT 59.651 41.667 0.00 0.00 0.00 3.69
3707 3823 1.067915 CACAACGGCGGGATTTGAAAT 60.068 47.619 13.24 0.00 0.00 2.17
3795 3913 4.838152 CGGTGGGCTCGGTGATGG 62.838 72.222 0.00 0.00 0.00 3.51
3825 3951 0.818040 GCCGGTCTTGGTCTTGTTGT 60.818 55.000 1.90 0.00 0.00 3.32
3835 3961 4.431416 TGGTCTTGTTGTACCAGAATGT 57.569 40.909 0.00 0.00 40.84 2.71
3977 4111 5.023533 TCATGAGGTAGTTGCATAGAACC 57.976 43.478 0.00 0.00 0.00 3.62
4020 4155 0.915364 GAGGAGGCCACTTCCTTCAT 59.085 55.000 13.06 0.00 36.38 2.57
4168 4304 2.599139 TACCCCCAGATCCAGGACGG 62.599 65.000 0.00 5.19 0.00 4.79
4175 4311 1.810030 GATCCAGGACGGCGACAAC 60.810 63.158 16.62 0.00 33.14 3.32
4255 4391 3.116079 GCTAGAGGCGTAGAGTAGACT 57.884 52.381 0.00 0.00 0.00 3.24
4256 4392 2.803956 GCTAGAGGCGTAGAGTAGACTG 59.196 54.545 0.00 0.00 0.00 3.51
4316 4452 6.906157 AGTGCATCTATTTTAATCCCCATG 57.094 37.500 0.00 0.00 0.00 3.66
4317 4453 5.776716 AGTGCATCTATTTTAATCCCCATGG 59.223 40.000 4.14 4.14 0.00 3.66
4342 4478 2.137177 TAGCCAGGCCTTTCACCCAC 62.137 60.000 8.22 0.00 0.00 4.61
4383 4519 8.679100 TCAAATGTTGATAGTTATTAAACCCCG 58.321 33.333 0.00 0.00 33.63 5.73
4393 4529 0.693622 TTAAACCCCGCATCACAGGA 59.306 50.000 0.00 0.00 0.00 3.86
4400 4536 0.734889 CCGCATCACAGGAATGGTTC 59.265 55.000 0.00 0.00 0.00 3.62
4470 4606 8.832735 ACAGAAATATTCTACTTAACCAGGGAA 58.167 33.333 0.00 0.00 38.11 3.97
4472 4608 7.985752 AGAAATATTCTACTTAACCAGGGAACG 59.014 37.037 0.00 0.00 38.49 3.95
4474 4610 4.525912 TTCTACTTAACCAGGGAACGAC 57.474 45.455 0.00 0.00 0.00 4.34
4488 4624 3.560068 GGGAACGACAAGGTTATATGCAG 59.440 47.826 0.00 0.00 0.00 4.41
4504 4640 1.654220 CAGAAGGTTTGTGCCCACG 59.346 57.895 0.00 0.00 0.00 4.94
4511 4647 2.556622 AGGTTTGTGCCCACGAATTTAG 59.443 45.455 4.53 0.00 37.09 1.85
4524 4660 6.455113 CCCACGAATTTAGTTCAATCTGTACG 60.455 42.308 0.00 0.00 36.60 3.67
4532 4668 2.654749 TCAATCTGTACGCTGGTCTG 57.345 50.000 0.00 0.00 0.00 3.51
4550 4686 7.096065 GCTGGTCTGACAAATTAAATCAACAAC 60.096 37.037 10.38 0.00 0.00 3.32
4552 4688 8.134895 TGGTCTGACAAATTAAATCAACAACTC 58.865 33.333 10.38 0.00 0.00 3.01
4553 4689 7.323656 GGTCTGACAAATTAAATCAACAACTCG 59.676 37.037 10.38 0.00 0.00 4.18
4556 4693 9.232082 CTGACAAATTAAATCAACAACTCGAAA 57.768 29.630 0.00 0.00 0.00 3.46
4569 4706 9.658475 TCAACAACTCGAAATTGTATTTAACAG 57.342 29.630 13.50 0.93 39.36 3.16
4570 4707 9.658475 CAACAACTCGAAATTGTATTTAACAGA 57.342 29.630 13.50 0.00 39.36 3.41
4621 4762 9.466497 AAATCCAAGCTTCAATTCTATAAGACA 57.534 29.630 0.00 0.00 0.00 3.41
4622 4763 7.849804 TCCAAGCTTCAATTCTATAAGACAC 57.150 36.000 0.00 0.00 0.00 3.67
4625 4766 8.734386 CCAAGCTTCAATTCTATAAGACACTTT 58.266 33.333 0.00 0.00 0.00 2.66
4669 4815 4.552674 TCCATAGCCAATACAGGTAGACA 58.447 43.478 0.00 0.00 0.00 3.41
4717 4864 7.683437 AATAGAGGTTTTGTAACTGGCTTAC 57.317 36.000 0.00 0.00 36.06 2.34
4723 4870 4.325028 TTTGTAACTGGCTTACGTCTGA 57.675 40.909 0.00 0.00 38.08 3.27
4724 4871 4.325028 TTGTAACTGGCTTACGTCTGAA 57.675 40.909 0.00 0.00 38.08 3.02
4727 4874 3.746045 AACTGGCTTACGTCTGAAGAA 57.254 42.857 0.00 0.00 0.00 2.52
4736 4883 7.227910 TGGCTTACGTCTGAAGAAAAATTTACT 59.772 33.333 0.00 0.00 0.00 2.24
4768 4915 6.004574 ACTTTCTTTGAAGAGTTATGGTCCC 58.995 40.000 0.00 0.00 36.22 4.46
4803 4950 9.982651 TCAGTAACTATTCCTTATTGACTATGC 57.017 33.333 0.00 0.00 0.00 3.14
4804 4951 9.209175 CAGTAACTATTCCTTATTGACTATGCC 57.791 37.037 0.00 0.00 0.00 4.40
4938 5085 8.894768 AACTACATCATCTAGAGTAAATTGGC 57.105 34.615 0.00 0.00 0.00 4.52
4960 5107 5.866092 GGCACTGAATTGAATTTCCTCTTTC 59.134 40.000 0.00 0.00 0.00 2.62
4993 5140 1.002134 ATGCGGAGTTGGTCTTGGG 60.002 57.895 0.00 0.00 0.00 4.12
5110 5257 4.233408 GCACCAAAGCTTGCTTCG 57.767 55.556 8.39 4.83 35.74 3.79
5111 5258 2.018324 GCACCAAAGCTTGCTTCGC 61.018 57.895 8.39 5.92 35.74 4.70
5112 5259 1.372128 CACCAAAGCTTGCTTCGCC 60.372 57.895 8.39 0.00 0.00 5.54
5113 5260 1.827789 ACCAAAGCTTGCTTCGCCA 60.828 52.632 8.39 0.00 0.00 5.69
5114 5261 1.080974 CCAAAGCTTGCTTCGCCAG 60.081 57.895 8.39 0.00 0.00 4.85
5115 5262 1.080974 CAAAGCTTGCTTCGCCAGG 60.081 57.895 8.39 0.00 0.00 4.45
5116 5263 2.270986 AAAGCTTGCTTCGCCAGGG 61.271 57.895 8.39 0.00 0.00 4.45
5119 5266 2.674380 CTTGCTTCGCCAGGGCTT 60.674 61.111 8.91 0.00 39.32 4.35
5120 5267 2.985282 TTGCTTCGCCAGGGCTTG 60.985 61.111 8.91 0.00 39.32 4.01
5263 5410 6.462552 TTGATGTTTTGATGAACTTGGACA 57.537 33.333 0.00 0.00 0.00 4.02
5278 5425 8.783093 TGAACTTGGACATTTTCATAGTAACAG 58.217 33.333 0.00 0.00 0.00 3.16
5300 5448 8.859236 ACAGAATGAGGATAATCCATGTATTG 57.141 34.615 0.00 0.00 38.32 1.90
5315 5463 6.072397 TCCATGTATTGTTTTCGTTTCGGATT 60.072 34.615 0.00 0.00 0.00 3.01
5317 5465 7.217447 CCATGTATTGTTTTCGTTTCGGATTAC 59.783 37.037 0.00 0.00 0.00 1.89
5324 5472 2.867429 TCGTTTCGGATTACGGTCTTC 58.133 47.619 11.57 0.00 44.45 2.87
5384 5532 0.385390 GTGCACCCTCCAAGTGTTTG 59.615 55.000 5.22 0.00 37.56 2.93
5408 5556 7.558604 TGTTGTTACTCTTGTTAAGTACCTGT 58.441 34.615 0.00 0.00 0.00 4.00
5410 5558 9.533253 GTTGTTACTCTTGTTAAGTACCTGTAA 57.467 33.333 0.00 0.00 0.00 2.41
5508 5657 5.308014 ACATTGAGCACTATTGTGAACTCA 58.692 37.500 11.66 11.56 46.55 3.41
5565 5714 6.280643 GGAAACAAAACTGAAGGCTGTATTT 58.719 36.000 0.00 0.00 0.00 1.40
5615 5764 5.050159 GGCTAATTTTTGCAACAAGGTTGAG 60.050 40.000 12.90 0.53 0.00 3.02
5635 5784 7.012044 GGTTGAGAGTTAAAACTGTTAGCTCAA 59.988 37.037 14.86 14.86 40.00 3.02
5706 5855 7.926674 TCAGTGAAAATGAGAATGCAATAGA 57.073 32.000 0.00 0.00 35.16 1.98
5886 6035 5.221185 CCTCTTATGCATTCACAGAAATGGG 60.221 44.000 3.54 0.00 37.17 4.00
6514 6679 2.112815 GGAACGCTACCACCATGGC 61.113 63.158 13.04 0.00 42.67 4.40
6515 6680 1.376683 GAACGCTACCACCATGGCA 60.377 57.895 13.04 0.00 42.67 4.92
6797 6963 5.761234 TGTTAGCAACGAAGGAATACAGTTT 59.239 36.000 0.00 0.00 0.00 2.66
6800 6966 4.084013 AGCAACGAAGGAATACAGTTTTCG 60.084 41.667 3.69 3.69 44.33 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 6.994868 TCGTGATTTTAAATTTTGTTCCCG 57.005 33.333 0.00 0.00 0.00 5.14
106 109 7.826252 TGTTCTCCATTTTGAAATTTGTTCCAA 59.174 29.630 0.00 0.00 0.00 3.53
107 110 7.334090 TGTTCTCCATTTTGAAATTTGTTCCA 58.666 30.769 0.00 0.00 0.00 3.53
346 417 9.609346 TTTAAAACAATTCGGGGATTTTAAACA 57.391 25.926 8.22 0.00 38.67 2.83
466 537 9.500785 TTTCAATAATTTCTTGGGATGTTTTCC 57.499 29.630 0.00 0.00 44.62 3.13
510 581 9.698309 TGCATTTTTAAAAATTGTTCGAGGATA 57.302 25.926 20.92 1.71 36.52 2.59
533 604 8.896744 TGTTCATTAATCCAAAACAAATTTGCA 58.103 25.926 18.12 0.00 45.79 4.08
534 605 9.727627 TTGTTCATTAATCCAAAACAAATTTGC 57.272 25.926 18.12 0.00 45.79 3.68
552 624 9.956720 TGTTTGTGTTTTCAAAAATTGTTCATT 57.043 22.222 0.00 0.00 38.97 2.57
600 672 9.143631 GCTAAAATTGTCAAAAATATCTGTGCT 57.856 29.630 0.00 0.00 0.00 4.40
601 673 8.924691 TGCTAAAATTGTCAAAAATATCTGTGC 58.075 29.630 0.00 0.00 0.00 4.57
603 675 9.979578 TGTGCTAAAATTGTCAAAAATATCTGT 57.020 25.926 0.00 0.00 0.00 3.41
610 682 9.565213 CCAAAATTGTGCTAAAATTGTCAAAAA 57.435 25.926 0.00 0.00 0.00 1.94
611 683 8.186821 CCCAAAATTGTGCTAAAATTGTCAAAA 58.813 29.630 0.00 0.00 0.00 2.44
612 684 7.554118 TCCCAAAATTGTGCTAAAATTGTCAAA 59.446 29.630 0.00 0.00 0.00 2.69
613 685 7.050377 TCCCAAAATTGTGCTAAAATTGTCAA 58.950 30.769 0.00 0.00 0.00 3.18
614 686 6.586344 TCCCAAAATTGTGCTAAAATTGTCA 58.414 32.000 0.00 0.00 0.00 3.58
615 687 7.011857 TGTTCCCAAAATTGTGCTAAAATTGTC 59.988 33.333 0.00 0.00 0.00 3.18
616 688 6.825721 TGTTCCCAAAATTGTGCTAAAATTGT 59.174 30.769 0.00 0.00 0.00 2.71
617 689 7.256756 TGTTCCCAAAATTGTGCTAAAATTG 57.743 32.000 0.00 0.00 0.00 2.32
618 690 7.718753 TCATGTTCCCAAAATTGTGCTAAAATT 59.281 29.630 0.00 0.00 0.00 1.82
619 691 7.222872 TCATGTTCCCAAAATTGTGCTAAAAT 58.777 30.769 0.00 0.00 0.00 1.82
620 692 6.586344 TCATGTTCCCAAAATTGTGCTAAAA 58.414 32.000 0.00 0.00 0.00 1.52
621 693 6.166984 TCATGTTCCCAAAATTGTGCTAAA 57.833 33.333 0.00 0.00 0.00 1.85
622 694 5.798125 TCATGTTCCCAAAATTGTGCTAA 57.202 34.783 0.00 0.00 0.00 3.09
623 695 5.304101 AGTTCATGTTCCCAAAATTGTGCTA 59.696 36.000 0.00 0.00 0.00 3.49
624 696 4.101430 AGTTCATGTTCCCAAAATTGTGCT 59.899 37.500 0.00 0.00 0.00 4.40
625 697 4.379652 AGTTCATGTTCCCAAAATTGTGC 58.620 39.130 0.00 0.00 0.00 4.57
626 698 6.538021 TCAAAGTTCATGTTCCCAAAATTGTG 59.462 34.615 0.00 0.00 0.00 3.33
627 699 6.648192 TCAAAGTTCATGTTCCCAAAATTGT 58.352 32.000 0.00 0.00 0.00 2.71
628 700 7.551035 TTCAAAGTTCATGTTCCCAAAATTG 57.449 32.000 0.00 0.00 0.00 2.32
629 701 8.750515 ATTTCAAAGTTCATGTTCCCAAAATT 57.249 26.923 0.00 0.00 0.00 1.82
630 702 9.844257 TTATTTCAAAGTTCATGTTCCCAAAAT 57.156 25.926 0.00 0.00 0.00 1.82
631 703 9.323985 CTTATTTCAAAGTTCATGTTCCCAAAA 57.676 29.630 0.00 0.00 0.00 2.44
632 704 8.700051 TCTTATTTCAAAGTTCATGTTCCCAAA 58.300 29.630 0.00 0.00 0.00 3.28
633 705 8.243961 TCTTATTTCAAAGTTCATGTTCCCAA 57.756 30.769 0.00 0.00 0.00 4.12
634 706 7.831691 TCTTATTTCAAAGTTCATGTTCCCA 57.168 32.000 0.00 0.00 0.00 4.37
635 707 9.541143 TTTTCTTATTTCAAAGTTCATGTTCCC 57.459 29.630 0.00 0.00 0.00 3.97
757 829 9.554724 GGTTTTCCTGTTTCTTTTTGATTTTTC 57.445 29.630 0.00 0.00 36.94 2.29
758 830 8.233868 CGGTTTTCCTGTTTCTTTTTGATTTTT 58.766 29.630 0.00 0.00 37.95 1.94
759 831 7.148323 CCGGTTTTCCTGTTTCTTTTTGATTTT 60.148 33.333 0.00 0.00 37.95 1.82
760 832 6.315144 CCGGTTTTCCTGTTTCTTTTTGATTT 59.685 34.615 0.00 0.00 37.95 2.17
761 833 5.815222 CCGGTTTTCCTGTTTCTTTTTGATT 59.185 36.000 0.00 0.00 37.95 2.57
762 834 5.105106 ACCGGTTTTCCTGTTTCTTTTTGAT 60.105 36.000 0.00 0.00 33.66 2.57
763 835 4.221041 ACCGGTTTTCCTGTTTCTTTTTGA 59.779 37.500 0.00 0.00 33.66 2.69
764 836 4.500127 ACCGGTTTTCCTGTTTCTTTTTG 58.500 39.130 0.00 0.00 33.66 2.44
765 837 4.811969 ACCGGTTTTCCTGTTTCTTTTT 57.188 36.364 0.00 0.00 33.66 1.94
766 838 4.221041 TGAACCGGTTTTCCTGTTTCTTTT 59.779 37.500 23.22 0.00 45.12 2.27
767 839 3.764972 TGAACCGGTTTTCCTGTTTCTTT 59.235 39.130 23.22 0.00 45.12 2.52
768 840 3.358118 TGAACCGGTTTTCCTGTTTCTT 58.642 40.909 23.22 0.00 45.12 2.52
769 841 2.949644 CTGAACCGGTTTTCCTGTTTCT 59.050 45.455 23.22 0.00 45.12 2.52
770 842 2.034179 CCTGAACCGGTTTTCCTGTTTC 59.966 50.000 23.22 5.67 45.12 2.78
771 843 2.028876 CCTGAACCGGTTTTCCTGTTT 58.971 47.619 23.22 0.00 45.12 2.83
773 845 0.549469 ACCTGAACCGGTTTTCCTGT 59.451 50.000 23.22 11.72 39.06 4.00
774 846 2.551032 GTTACCTGAACCGGTTTTCCTG 59.449 50.000 23.22 12.40 38.49 3.86
775 847 2.854963 GTTACCTGAACCGGTTTTCCT 58.145 47.619 23.22 7.49 38.49 3.36
796 868 6.525629 TCTGGTTTTGAGAACCTTCTAGAAG 58.474 40.000 23.31 23.31 40.88 2.85
797 869 6.494666 TCTGGTTTTGAGAACCTTCTAGAA 57.505 37.500 4.81 4.81 40.88 2.10
798 870 6.688073 ATCTGGTTTTGAGAACCTTCTAGA 57.312 37.500 6.45 1.25 40.88 2.43
799 871 7.751768 AAATCTGGTTTTGAGAACCTTCTAG 57.248 36.000 6.45 0.00 40.88 2.43
800 872 8.533569 AAAAATCTGGTTTTGAGAACCTTCTA 57.466 30.769 6.45 0.00 39.86 2.10
801 873 7.423844 AAAAATCTGGTTTTGAGAACCTTCT 57.576 32.000 6.45 0.00 39.86 2.85
826 898 6.790232 ATCTGGTTTTGGAACTCTCAAAAA 57.210 33.333 3.95 0.00 43.08 1.94
827 899 7.889873 TTATCTGGTTTTGGAACTCTCAAAA 57.110 32.000 0.00 0.00 40.46 2.44
828 900 7.201875 GGTTTATCTGGTTTTGGAACTCTCAAA 60.202 37.037 0.00 0.00 36.03 2.69
829 901 6.264518 GGTTTATCTGGTTTTGGAACTCTCAA 59.735 38.462 0.00 0.00 36.03 3.02
830 902 5.768164 GGTTTATCTGGTTTTGGAACTCTCA 59.232 40.000 0.00 0.00 36.03 3.27
831 903 5.106673 CGGTTTATCTGGTTTTGGAACTCTC 60.107 44.000 0.00 0.00 36.03 3.20
832 904 4.760204 CGGTTTATCTGGTTTTGGAACTCT 59.240 41.667 0.00 0.00 36.03 3.24
833 905 4.082949 CCGGTTTATCTGGTTTTGGAACTC 60.083 45.833 0.00 0.00 37.78 3.01
834 906 3.824443 CCGGTTTATCTGGTTTTGGAACT 59.176 43.478 0.00 0.00 37.78 3.01
835 907 3.613193 GCCGGTTTATCTGGTTTTGGAAC 60.613 47.826 1.90 0.00 44.16 3.62
836 908 2.559231 GCCGGTTTATCTGGTTTTGGAA 59.441 45.455 1.90 0.00 44.16 3.53
837 909 2.164338 GCCGGTTTATCTGGTTTTGGA 58.836 47.619 1.90 0.00 44.16 3.53
838 910 2.094752 CAGCCGGTTTATCTGGTTTTGG 60.095 50.000 1.90 0.00 44.16 3.28
839 911 2.094752 CCAGCCGGTTTATCTGGTTTTG 60.095 50.000 14.96 0.00 44.16 2.44
840 912 2.167662 CCAGCCGGTTTATCTGGTTTT 58.832 47.619 14.96 0.00 44.16 2.43
841 913 1.353022 TCCAGCCGGTTTATCTGGTTT 59.647 47.619 20.46 0.00 45.67 3.27
842 914 0.988832 TCCAGCCGGTTTATCTGGTT 59.011 50.000 20.46 0.00 45.67 3.67
843 915 0.988832 TTCCAGCCGGTTTATCTGGT 59.011 50.000 20.46 0.00 45.67 4.00
844 916 2.122783 TTTCCAGCCGGTTTATCTGG 57.877 50.000 16.59 16.59 46.60 3.86
845 917 3.081804 AGTTTTCCAGCCGGTTTATCTG 58.918 45.455 1.90 0.42 0.00 2.90
846 918 3.009143 AGAGTTTTCCAGCCGGTTTATCT 59.991 43.478 1.90 0.00 0.00 1.98
847 919 3.344515 AGAGTTTTCCAGCCGGTTTATC 58.655 45.455 1.90 0.00 0.00 1.75
848 920 3.434940 AGAGTTTTCCAGCCGGTTTAT 57.565 42.857 1.90 0.00 0.00 1.40
849 921 2.943036 AGAGTTTTCCAGCCGGTTTA 57.057 45.000 1.90 0.00 0.00 2.01
850 922 2.370849 TCTAGAGTTTTCCAGCCGGTTT 59.629 45.455 1.90 0.00 0.00 3.27
851 923 1.975680 TCTAGAGTTTTCCAGCCGGTT 59.024 47.619 1.90 0.00 0.00 4.44
852 924 1.640917 TCTAGAGTTTTCCAGCCGGT 58.359 50.000 1.90 0.00 0.00 5.28
853 925 2.622436 CTTCTAGAGTTTTCCAGCCGG 58.378 52.381 0.00 0.00 0.00 6.13
854 926 2.028020 ACCTTCTAGAGTTTTCCAGCCG 60.028 50.000 0.00 0.00 0.00 5.52
855 927 3.704800 ACCTTCTAGAGTTTTCCAGCC 57.295 47.619 0.00 0.00 0.00 4.85
856 928 4.004314 GGAACCTTCTAGAGTTTTCCAGC 58.996 47.826 17.38 0.00 36.39 4.85
873 945 2.742710 GCGCTTCCGTTTTGGGAACC 62.743 60.000 0.00 0.00 41.08 3.62
874 946 1.371267 GCGCTTCCGTTTTGGGAAC 60.371 57.895 0.00 0.00 41.08 3.62
875 947 1.527380 AGCGCTTCCGTTTTGGGAA 60.527 52.632 2.64 0.00 43.66 3.97
876 948 2.112297 AGCGCTTCCGTTTTGGGA 59.888 55.556 2.64 0.00 38.76 4.37
877 949 2.255252 CAGCGCTTCCGTTTTGGG 59.745 61.111 7.50 0.00 38.76 4.12
878 950 2.429069 GCAGCGCTTCCGTTTTGG 60.429 61.111 7.50 0.00 40.09 3.28
879 951 1.067199 GATGCAGCGCTTCCGTTTTG 61.067 55.000 7.50 0.00 36.67 2.44
880 952 1.210155 GATGCAGCGCTTCCGTTTT 59.790 52.632 7.50 0.00 36.67 2.43
881 953 1.965930 TGATGCAGCGCTTCCGTTT 60.966 52.632 7.50 0.00 36.67 3.60
882 954 2.358615 TGATGCAGCGCTTCCGTT 60.359 55.556 7.50 0.00 36.67 4.44
883 955 3.121030 GTGATGCAGCGCTTCCGT 61.121 61.111 7.50 2.54 36.67 4.69
884 956 4.214383 CGTGATGCAGCGCTTCCG 62.214 66.667 7.50 5.64 32.74 4.30
885 957 3.869272 CCGTGATGCAGCGCTTCC 61.869 66.667 7.50 1.67 32.74 3.46
886 958 1.358725 TTACCGTGATGCAGCGCTTC 61.359 55.000 7.50 2.39 34.04 3.86
887 959 0.744414 ATTACCGTGATGCAGCGCTT 60.744 50.000 7.50 2.83 0.00 4.68
888 960 1.153369 ATTACCGTGATGCAGCGCT 60.153 52.632 14.32 2.64 0.00 5.92
889 961 1.010797 CATTACCGTGATGCAGCGC 60.011 57.895 5.20 5.20 0.00 5.92
890 962 1.643292 CCATTACCGTGATGCAGCG 59.357 57.895 0.00 0.00 0.00 5.18
891 963 2.024918 CCCATTACCGTGATGCAGC 58.975 57.895 0.00 0.00 0.00 5.25
892 964 1.447317 GGCCCATTACCGTGATGCAG 61.447 60.000 0.00 0.00 0.00 4.41
893 965 1.453015 GGCCCATTACCGTGATGCA 60.453 57.895 0.00 0.00 0.00 3.96
894 966 2.542907 CGGCCCATTACCGTGATGC 61.543 63.158 0.00 0.00 45.70 3.91
895 967 3.731136 CGGCCCATTACCGTGATG 58.269 61.111 0.00 0.00 45.70 3.07
908 980 3.477578 GAGGTAAGATGGGCCGGCC 62.478 68.421 38.57 38.57 0.00 6.13
909 981 2.111251 GAGGTAAGATGGGCCGGC 59.889 66.667 21.18 21.18 0.00 6.13
910 982 2.819284 GGGAGGTAAGATGGGCCGG 61.819 68.421 0.00 0.00 0.00 6.13
911 983 2.829592 GGGAGGTAAGATGGGCCG 59.170 66.667 0.00 0.00 0.00 6.13
912 984 1.128188 ATCGGGAGGTAAGATGGGCC 61.128 60.000 0.00 0.00 0.00 5.80
913 985 0.321996 GATCGGGAGGTAAGATGGGC 59.678 60.000 0.00 0.00 0.00 5.36
914 986 0.603569 CGATCGGGAGGTAAGATGGG 59.396 60.000 7.38 0.00 0.00 4.00
915 987 0.038159 GCGATCGGGAGGTAAGATGG 60.038 60.000 18.30 0.00 0.00 3.51
916 988 0.962489 AGCGATCGGGAGGTAAGATG 59.038 55.000 18.30 0.00 0.00 2.90
917 989 2.438411 CTAGCGATCGGGAGGTAAGAT 58.562 52.381 18.30 0.00 0.00 2.40
918 990 1.893544 CTAGCGATCGGGAGGTAAGA 58.106 55.000 18.30 0.00 0.00 2.10
919 991 0.241481 GCTAGCGATCGGGAGGTAAG 59.759 60.000 18.30 0.00 0.00 2.34
920 992 0.178998 AGCTAGCGATCGGGAGGTAA 60.179 55.000 18.30 0.00 0.00 2.85
921 993 0.605860 GAGCTAGCGATCGGGAGGTA 60.606 60.000 18.30 0.00 0.00 3.08
922 994 1.899534 GAGCTAGCGATCGGGAGGT 60.900 63.158 18.30 0.00 0.00 3.85
923 995 1.602323 AGAGCTAGCGATCGGGAGG 60.602 63.158 18.30 0.00 0.00 4.30
924 996 1.169661 ACAGAGCTAGCGATCGGGAG 61.170 60.000 18.30 0.00 0.00 4.30
925 997 1.152943 ACAGAGCTAGCGATCGGGA 60.153 57.895 18.30 0.00 0.00 5.14
926 998 1.007964 CACAGAGCTAGCGATCGGG 60.008 63.158 18.30 3.41 0.00 5.14
927 999 1.007964 CCACAGAGCTAGCGATCGG 60.008 63.158 18.30 5.83 0.00 4.18
928 1000 1.007964 CCCACAGAGCTAGCGATCG 60.008 63.158 11.69 11.69 0.00 3.69
929 1001 0.747255 TTCCCACAGAGCTAGCGATC 59.253 55.000 9.55 2.04 0.00 3.69
930 1002 1.134670 GTTTCCCACAGAGCTAGCGAT 60.135 52.381 9.55 0.00 0.00 4.58
931 1003 0.246635 GTTTCCCACAGAGCTAGCGA 59.753 55.000 9.55 0.00 0.00 4.93
932 1004 0.741221 GGTTTCCCACAGAGCTAGCG 60.741 60.000 9.55 0.00 0.00 4.26
933 1005 0.615850 AGGTTTCCCACAGAGCTAGC 59.384 55.000 6.62 6.62 0.00 3.42
934 1006 1.134965 CGAGGTTTCCCACAGAGCTAG 60.135 57.143 0.00 0.00 0.00 3.42
935 1007 0.895530 CGAGGTTTCCCACAGAGCTA 59.104 55.000 0.00 0.00 0.00 3.32
936 1008 0.832135 TCGAGGTTTCCCACAGAGCT 60.832 55.000 0.00 0.00 0.00 4.09
937 1009 0.670854 GTCGAGGTTTCCCACAGAGC 60.671 60.000 0.00 0.00 0.00 4.09
938 1010 0.679505 TGTCGAGGTTTCCCACAGAG 59.320 55.000 0.00 0.00 0.00 3.35
939 1011 0.391597 GTGTCGAGGTTTCCCACAGA 59.608 55.000 0.00 0.00 0.00 3.41
940 1012 0.393077 AGTGTCGAGGTTTCCCACAG 59.607 55.000 3.35 0.00 0.00 3.66
941 1013 0.834612 AAGTGTCGAGGTTTCCCACA 59.165 50.000 3.35 0.00 0.00 4.17
942 1014 1.202604 TGAAGTGTCGAGGTTTCCCAC 60.203 52.381 0.00 0.00 0.00 4.61
943 1015 1.124780 TGAAGTGTCGAGGTTTCCCA 58.875 50.000 0.00 0.00 0.00 4.37
944 1016 1.871676 GTTGAAGTGTCGAGGTTTCCC 59.128 52.381 0.00 0.00 0.00 3.97
945 1017 1.525619 CGTTGAAGTGTCGAGGTTTCC 59.474 52.381 0.00 0.00 0.00 3.13
946 1018 1.070776 GCGTTGAAGTGTCGAGGTTTC 60.071 52.381 0.00 0.00 0.00 2.78
947 1019 0.935196 GCGTTGAAGTGTCGAGGTTT 59.065 50.000 0.00 0.00 0.00 3.27
948 1020 0.179094 TGCGTTGAAGTGTCGAGGTT 60.179 50.000 0.00 0.00 0.00 3.50
949 1021 0.179094 TTGCGTTGAAGTGTCGAGGT 60.179 50.000 0.00 0.00 0.00 3.85
950 1022 0.934496 TTTGCGTTGAAGTGTCGAGG 59.066 50.000 0.00 0.00 0.00 4.63
951 1023 2.730183 TTTTGCGTTGAAGTGTCGAG 57.270 45.000 0.00 0.00 0.00 4.04
952 1024 2.852901 GCATTTTGCGTTGAAGTGTCGA 60.853 45.455 0.00 0.00 31.71 4.20
953 1025 1.447938 GCATTTTGCGTTGAAGTGTCG 59.552 47.619 0.00 0.00 31.71 4.35
965 1037 3.698029 ATCCTATGTGACGCATTTTGC 57.302 42.857 6.84 0.00 40.69 3.68
966 1038 6.373779 GGAATATCCTATGTGACGCATTTTG 58.626 40.000 6.84 0.00 38.94 2.44
967 1039 5.473504 GGGAATATCCTATGTGACGCATTTT 59.526 40.000 6.84 0.00 36.57 1.82
968 1040 5.003804 GGGAATATCCTATGTGACGCATTT 58.996 41.667 6.84 0.00 36.57 2.32
969 1041 4.041567 TGGGAATATCCTATGTGACGCATT 59.958 41.667 6.84 0.00 36.57 3.56
970 1042 3.582647 TGGGAATATCCTATGTGACGCAT 59.417 43.478 6.73 6.73 36.57 4.73
971 1043 2.969262 TGGGAATATCCTATGTGACGCA 59.031 45.455 0.00 0.00 36.57 5.24
972 1044 3.326747 GTGGGAATATCCTATGTGACGC 58.673 50.000 0.00 0.00 36.57 5.19
973 1045 3.614150 CGGTGGGAATATCCTATGTGACG 60.614 52.174 0.00 0.00 36.57 4.35
974 1046 3.576982 TCGGTGGGAATATCCTATGTGAC 59.423 47.826 0.00 0.00 36.57 3.67
975 1047 3.851979 TCGGTGGGAATATCCTATGTGA 58.148 45.455 0.00 0.00 36.57 3.58
976 1048 4.040461 ACTTCGGTGGGAATATCCTATGTG 59.960 45.833 0.00 0.00 36.57 3.21
977 1049 4.040461 CACTTCGGTGGGAATATCCTATGT 59.960 45.833 0.00 0.00 41.88 2.29
978 1050 4.569943 CACTTCGGTGGGAATATCCTATG 58.430 47.826 0.00 0.00 41.88 2.23
979 1051 3.008049 GCACTTCGGTGGGAATATCCTAT 59.992 47.826 0.00 0.00 45.39 2.57
980 1052 2.367567 GCACTTCGGTGGGAATATCCTA 59.632 50.000 0.00 0.00 45.39 2.94
981 1053 1.141053 GCACTTCGGTGGGAATATCCT 59.859 52.381 0.00 0.00 45.39 3.24
982 1054 1.594331 GCACTTCGGTGGGAATATCC 58.406 55.000 0.00 0.00 45.39 2.59
983 1055 1.594331 GGCACTTCGGTGGGAATATC 58.406 55.000 0.00 0.00 45.39 1.63
984 1056 0.179056 CGGCACTTCGGTGGGAATAT 60.179 55.000 0.00 0.00 45.39 1.28
985 1057 1.219664 CGGCACTTCGGTGGGAATA 59.780 57.895 0.00 0.00 45.39 1.75
986 1058 2.046314 CGGCACTTCGGTGGGAAT 60.046 61.111 0.00 0.00 45.39 3.01
1030 1102 2.372074 GGTGCTCCGGGGTTGGATA 61.372 63.158 1.62 0.00 37.41 2.59
1080 1152 4.996976 CACTGAAGGTGGAGACGG 57.003 61.111 0.00 0.00 41.90 4.79
1190 1262 5.303971 ACAGAGACAAGATCAAGAAACCTG 58.696 41.667 0.00 0.00 0.00 4.00
1343 1419 1.908483 GATCCCAAGTTCTCGCCCT 59.092 57.895 0.00 0.00 0.00 5.19
1366 1442 3.069586 TCTCCCGAATATGCTTGAACGAT 59.930 43.478 0.00 0.00 0.00 3.73
1411 1487 5.401531 AGGAGTACTAAACAGCGAAATCA 57.598 39.130 0.00 0.00 0.00 2.57
1435 1511 5.014808 CCATGATGGCTTTCCCTAAAAAG 57.985 43.478 0.00 0.00 38.91 2.27
1538 1614 6.645700 TGTTTTTCACAGAAAGTTGATTGC 57.354 33.333 0.00 0.00 0.00 3.56
1697 1774 6.457392 GCATGGGTGTTATAGATGCATTATCG 60.457 42.308 0.00 0.00 40.86 2.92
2106 2183 2.412870 TCACGATGTTGTGCTTACTGG 58.587 47.619 0.00 0.00 39.73 4.00
2141 2218 1.059098 TCAATCAGATGCCGGGCTAT 58.941 50.000 21.46 11.91 0.00 2.97
2191 2268 5.663106 AGTACAGTTGACAGATATGGGTCAT 59.337 40.000 6.82 0.00 43.01 3.06
2199 2276 6.460261 GCTGATGCTAGTACAGTTGACAGATA 60.460 42.308 0.00 0.00 36.03 1.98
2210 2287 6.535150 GTGAGTTTATTGCTGATGCTAGTACA 59.465 38.462 0.00 0.00 40.48 2.90
2240 2317 2.500229 GACGTCTGGTTGAAATTGGGA 58.500 47.619 8.70 0.00 0.00 4.37
2246 2323 1.961793 CAAGGGACGTCTGGTTGAAA 58.038 50.000 16.46 0.00 0.00 2.69
2258 2335 2.024414 AGTTGTGTTCAAGCAAGGGAC 58.976 47.619 0.00 0.00 33.97 4.46
2295 2372 0.398318 AAGCAAGGACCTGAGGACAC 59.602 55.000 4.99 0.00 0.00 3.67
2443 2524 0.042131 ACCGAATCCAGTCTGGGGTA 59.958 55.000 19.11 0.00 38.32 3.69
2654 2737 0.613777 GGAACAGTGGGACGAGGATT 59.386 55.000 0.00 0.00 0.00 3.01
2682 2765 3.428870 CGAAAGTTAGTGAACGCATCAGT 59.571 43.478 4.74 4.74 44.09 3.41
2683 2766 3.428870 ACGAAAGTTAGTGAACGCATCAG 59.571 43.478 0.00 0.00 46.40 2.90
2724 2807 6.183360 GCCCGAACAGAAAAATTATCTCATCA 60.183 38.462 0.00 0.00 0.00 3.07
2822 2905 2.672961 TGCAGGTATCCAGACTTTCG 57.327 50.000 0.00 0.00 0.00 3.46
2958 3042 6.058183 GGATGCATCTTACTGGTTATGAAGT 58.942 40.000 25.28 0.00 0.00 3.01
2981 3065 4.440112 GGAGGCTTTTGGTAATCAATTCGG 60.440 45.833 0.00 0.00 34.98 4.30
2989 3073 3.201266 TCCATACGGAGGCTTTTGGTAAT 59.799 43.478 0.00 0.00 35.91 1.89
3026 3110 7.012894 TGTTTCGTTATTTCTTTGTGACTCCAT 59.987 33.333 0.00 0.00 0.00 3.41
3027 3111 6.316640 TGTTTCGTTATTTCTTTGTGACTCCA 59.683 34.615 0.00 0.00 0.00 3.86
3048 3132 6.406370 TCCATCATCGTACTCAAAGATGTTT 58.594 36.000 7.34 0.00 42.63 2.83
3053 3137 5.451937 GGTGATCCATCATCGTACTCAAAGA 60.452 44.000 0.00 0.00 39.30 2.52
3069 3153 0.460109 CATTCGTGAGCGGTGATCCA 60.460 55.000 0.00 0.00 38.89 3.41
3070 3154 0.460284 ACATTCGTGAGCGGTGATCC 60.460 55.000 0.00 0.00 38.89 3.36
3071 3155 0.647410 CACATTCGTGAGCGGTGATC 59.353 55.000 0.00 0.00 46.80 2.92
3072 3156 2.754648 CACATTCGTGAGCGGTGAT 58.245 52.632 0.00 0.00 46.80 3.06
3073 3157 4.260194 CACATTCGTGAGCGGTGA 57.740 55.556 0.00 0.00 46.80 4.02
3087 3198 9.559732 CACTTATCTACCATCCATTTTATCACA 57.440 33.333 0.00 0.00 0.00 3.58
3104 3215 9.692749 GTACGATGATTGAAATCCACTTATCTA 57.307 33.333 0.00 0.00 34.50 1.98
3105 3216 7.657761 GGTACGATGATTGAAATCCACTTATCT 59.342 37.037 0.00 0.00 34.50 1.98
3106 3217 7.441157 TGGTACGATGATTGAAATCCACTTATC 59.559 37.037 0.00 0.00 34.50 1.75
3107 3218 7.279615 TGGTACGATGATTGAAATCCACTTAT 58.720 34.615 0.00 0.00 34.50 1.73
3108 3219 6.645306 TGGTACGATGATTGAAATCCACTTA 58.355 36.000 0.00 0.00 34.50 2.24
3109 3220 5.496556 TGGTACGATGATTGAAATCCACTT 58.503 37.500 0.00 0.00 34.50 3.16
3110 3221 5.097742 TGGTACGATGATTGAAATCCACT 57.902 39.130 0.00 0.00 34.50 4.00
3111 3222 5.811399 TTGGTACGATGATTGAAATCCAC 57.189 39.130 0.00 0.00 34.50 4.02
3137 3248 7.749126 TCTGTGCGTACGACATATTATCTTATG 59.251 37.037 21.65 4.62 35.98 1.90
3138 3249 7.813645 TCTGTGCGTACGACATATTATCTTAT 58.186 34.615 21.65 0.00 0.00 1.73
3141 3252 5.684550 TCTGTGCGTACGACATATTATCT 57.315 39.130 21.65 0.00 0.00 1.98
3174 3285 7.414429 GGCTTCATATAATATTGAATGCTGCGA 60.414 37.037 0.00 0.00 31.83 5.10
3179 3290 7.088589 ACCGGCTTCATATAATATTGAATGC 57.911 36.000 0.00 0.65 31.83 3.56
3212 3323 8.579682 AATTCTACAGAACAAAAACATGCTTC 57.420 30.769 0.00 0.00 36.80 3.86
3227 3338 5.470098 GCTGTTGAGGAACAAATTCTACAGA 59.530 40.000 15.76 0.00 41.62 3.41
3261 3372 7.018550 AGGAAACCAGGCTTCATATAATATGGA 59.981 37.037 4.94 0.00 0.00 3.41
3263 3374 8.517878 CAAGGAAACCAGGCTTCATATAATATG 58.482 37.037 4.94 0.00 0.00 1.78
3281 3392 7.865706 TTCTATAAGATGCTTCCAAGGAAAC 57.134 36.000 2.78 0.00 33.34 2.78
3283 3394 7.013655 GCATTTCTATAAGATGCTTCCAAGGAA 59.986 37.037 0.99 0.99 42.12 3.36
3284 3395 6.488006 GCATTTCTATAAGATGCTTCCAAGGA 59.512 38.462 0.00 0.00 42.12 3.36
3285 3396 6.675987 GCATTTCTATAAGATGCTTCCAAGG 58.324 40.000 0.00 0.00 42.12 3.61
3302 3413 4.723309 GGATCCCTAACATGAGCATTTCT 58.277 43.478 0.00 0.00 0.00 2.52
3311 3422 1.308998 GTTGCCGGATCCCTAACATG 58.691 55.000 5.05 0.00 0.00 3.21
3556 3667 1.002544 CTCAAGAACACCTCACCTCCC 59.997 57.143 0.00 0.00 0.00 4.30
3607 3718 2.187958 CACCACCATAGAAGGAGGACA 58.812 52.381 3.44 0.00 41.43 4.02
3615 3729 2.504175 GGACTTAGCCACCACCATAGAA 59.496 50.000 0.00 0.00 0.00 2.10
3680 3795 2.046314 CCGCCGTTGTGGAATCCT 60.046 61.111 0.00 0.00 45.51 3.24
3707 3823 5.044328 AGGATAGACTGTACTACTTGTCCCA 60.044 44.000 0.00 1.26 0.00 4.37
3825 3951 4.764823 CAGCCAAAGGTTTACATTCTGGTA 59.235 41.667 8.88 0.00 0.00 3.25
3835 3961 3.343617 CGAGGAATCAGCCAAAGGTTTA 58.656 45.455 0.00 0.00 0.00 2.01
4157 4293 1.810030 GTTGTCGCCGTCCTGGATC 60.810 63.158 0.00 0.00 42.00 3.36
4168 4304 8.126871 TCTATAATACTGAATGTTGTTGTCGC 57.873 34.615 0.00 0.00 0.00 5.19
4197 4333 5.336372 GGATCTAGCTTCGCTTATGTCTCAT 60.336 44.000 0.00 0.00 40.44 2.90
4214 4350 3.081061 CTCAGGAGTCCGATGGATCTAG 58.919 54.545 2.76 0.00 32.73 2.43
4263 4399 9.696917 AATAAAATCCATCTCAAGAACAACAAC 57.303 29.630 0.00 0.00 0.00 3.32
4265 4401 8.859090 ACAATAAAATCCATCTCAAGAACAACA 58.141 29.630 0.00 0.00 0.00 3.33
4266 4402 9.696917 AACAATAAAATCCATCTCAAGAACAAC 57.303 29.630 0.00 0.00 0.00 3.32
4293 4429 5.776716 CCATGGGGATTAAAATAGATGCACT 59.223 40.000 2.85 0.00 35.59 4.40
4296 4432 4.774200 AGCCATGGGGATTAAAATAGATGC 59.226 41.667 15.13 0.00 35.59 3.91
4309 4445 2.448542 GCTAGGGAGCCATGGGGA 60.449 66.667 15.13 0.00 43.49 4.81
4342 4478 7.755591 TCAACATTTGAAAGATTAGCTAGCAG 58.244 34.615 18.83 0.00 36.59 4.24
4381 4517 0.734889 GAACCATTCCTGTGATGCGG 59.265 55.000 0.00 0.00 0.00 5.69
4382 4518 0.734889 GGAACCATTCCTGTGATGCG 59.265 55.000 0.10 0.00 46.57 4.73
4393 4529 4.482990 AGGAATGTTGTTGAGGAACCATT 58.517 39.130 0.00 0.00 30.83 3.16
4400 4536 5.875359 GGTAGAACTAGGAATGTTGTTGAGG 59.125 44.000 0.00 0.00 0.00 3.86
4433 4569 9.829507 AGTAGAATATTTCTGTTCCTTCTCATG 57.170 33.333 0.07 0.00 40.94 3.07
4470 4606 4.081087 ACCTTCTGCATATAACCTTGTCGT 60.081 41.667 0.00 0.00 0.00 4.34
4472 4608 6.151144 ACAAACCTTCTGCATATAACCTTGTC 59.849 38.462 0.00 0.00 0.00 3.18
4474 4610 6.324819 CACAAACCTTCTGCATATAACCTTG 58.675 40.000 0.00 0.00 0.00 3.61
4488 4624 0.958822 ATTCGTGGGCACAAACCTTC 59.041 50.000 0.00 0.00 0.00 3.46
4504 4640 6.092259 ACCAGCGTACAGATTGAACTAAATTC 59.908 38.462 0.00 0.00 37.88 2.17
4511 4647 2.668457 CAGACCAGCGTACAGATTGAAC 59.332 50.000 0.00 0.00 0.00 3.18
4524 4660 6.446318 TGTTGATTTAATTTGTCAGACCAGC 58.554 36.000 0.00 0.00 0.00 4.85
4637 4783 8.708378 CCTGTATTGGCTATGGATCATATTCTA 58.292 37.037 0.00 0.00 0.00 2.10
4669 4815 0.910088 GGGTGCCTGGGACTAGTCTT 60.910 60.000 21.88 0.00 0.00 3.01
4717 4864 7.414436 TGTTCCAGTAAATTTTTCTTCAGACG 58.586 34.615 0.00 0.00 0.00 4.18
4723 4870 9.803315 GAAAGTCTGTTCCAGTAAATTTTTCTT 57.197 29.630 0.00 0.00 32.61 2.52
4724 4871 9.190317 AGAAAGTCTGTTCCAGTAAATTTTTCT 57.810 29.630 0.00 0.00 32.61 2.52
4727 4874 9.586435 CAAAGAAAGTCTGTTCCAGTAAATTTT 57.414 29.630 0.00 0.00 32.61 1.82
4736 4883 5.745227 ACTCTTCAAAGAAAGTCTGTTCCA 58.255 37.500 0.00 0.00 34.03 3.53
4768 4915 9.745880 ATAAGGAATAGTTACTGACGTACAATG 57.254 33.333 0.00 0.00 0.00 2.82
4803 4950 8.819974 GCATGTTATTTTCTTACAATGAATGGG 58.180 33.333 0.00 0.00 0.00 4.00
4804 4951 9.590451 AGCATGTTATTTTCTTACAATGAATGG 57.410 29.630 0.00 0.00 0.00 3.16
4835 4982 5.222631 GCATTCCTGTGGTAGAAAAACAAG 58.777 41.667 0.00 0.00 0.00 3.16
4839 4986 4.079253 GAGGCATTCCTGTGGTAGAAAAA 58.921 43.478 0.00 0.00 44.46 1.94
4912 5059 8.983724 GCCAATTTACTCTAGATGATGTAGTTC 58.016 37.037 0.00 0.00 0.00 3.01
4913 5060 8.486210 TGCCAATTTACTCTAGATGATGTAGTT 58.514 33.333 0.00 0.00 0.00 2.24
4914 5061 7.928706 GTGCCAATTTACTCTAGATGATGTAGT 59.071 37.037 0.00 0.00 0.00 2.73
4915 5062 8.147058 AGTGCCAATTTACTCTAGATGATGTAG 58.853 37.037 0.00 0.00 0.00 2.74
4916 5063 7.928167 CAGTGCCAATTTACTCTAGATGATGTA 59.072 37.037 0.00 0.00 0.00 2.29
4938 5085 7.879070 TCAGAAAGAGGAAATTCAATTCAGTG 58.121 34.615 0.00 0.00 0.00 3.66
4960 5107 0.250467 CGCATCCCCCACCTATTCAG 60.250 60.000 0.00 0.00 0.00 3.02
4993 5140 2.525105 TTCCAAAGCCCCATCCTAAC 57.475 50.000 0.00 0.00 0.00 2.34
5110 5257 0.752658 ACTTTTCAACAAGCCCTGGC 59.247 50.000 0.00 0.00 42.33 4.85
5111 5258 2.294512 GAGACTTTTCAACAAGCCCTGG 59.705 50.000 0.00 0.00 0.00 4.45
5112 5259 2.031682 CGAGACTTTTCAACAAGCCCTG 60.032 50.000 0.00 0.00 0.00 4.45
5113 5260 2.222027 CGAGACTTTTCAACAAGCCCT 58.778 47.619 0.00 0.00 0.00 5.19
5114 5261 1.947456 ACGAGACTTTTCAACAAGCCC 59.053 47.619 0.00 0.00 0.00 5.19
5115 5262 2.031944 GGACGAGACTTTTCAACAAGCC 60.032 50.000 0.00 0.00 0.00 4.35
5116 5263 2.872858 AGGACGAGACTTTTCAACAAGC 59.127 45.455 0.00 0.00 0.00 4.01
5117 5264 6.347725 CCATAAGGACGAGACTTTTCAACAAG 60.348 42.308 0.00 0.00 36.89 3.16
5118 5265 5.468746 CCATAAGGACGAGACTTTTCAACAA 59.531 40.000 0.00 0.00 36.89 2.83
5119 5266 4.994852 CCATAAGGACGAGACTTTTCAACA 59.005 41.667 0.00 0.00 36.89 3.33
5120 5267 4.142881 GCCATAAGGACGAGACTTTTCAAC 60.143 45.833 0.00 0.00 36.89 3.18
5165 5312 1.342819 GGTAACATTGCCTGTGCCAAA 59.657 47.619 0.00 0.00 38.39 3.28
5300 5448 3.429881 AGACCGTAATCCGAAACGAAAAC 59.570 43.478 7.92 0.00 41.55 2.43
5315 5463 9.214957 CAATATTAGCCAAATATGAAGACCGTA 57.785 33.333 3.37 0.00 39.41 4.02
5317 5465 8.099364 ACAATATTAGCCAAATATGAAGACCG 57.901 34.615 3.37 0.00 39.41 4.79
5374 5522 5.949735 ACAAGAGTAACAACAAACACTTGG 58.050 37.500 14.21 1.41 43.93 3.61
5384 5532 9.533253 TTACAGGTACTTAACAAGAGTAACAAC 57.467 33.333 2.59 0.00 39.28 3.32
5475 5624 7.329226 ACAATAGTGCTCAATGTTTTTATGCAC 59.671 33.333 0.00 0.00 46.38 4.57
5497 5646 2.915604 AGGGGAGTCATGAGTTCACAAT 59.084 45.455 13.78 0.00 0.00 2.71
5508 5657 4.803329 AGAAATTATGCAGGGGAGTCAT 57.197 40.909 0.00 0.00 0.00 3.06
5593 5742 6.980397 ACTCTCAACCTTGTTGCAAAAATTAG 59.020 34.615 1.65 0.00 0.00 1.73
5615 5764 9.516314 AACATTTTGAGCTAACAGTTTTAACTC 57.484 29.630 0.00 0.00 37.08 3.01
5635 5784 9.874205 CACCTGATTGTAATATTTGGAACATTT 57.126 29.630 0.00 0.00 39.30 2.32
5706 5855 8.725148 CAGTGTTAAACTCTGCATTAATCTTCT 58.275 33.333 0.00 0.00 36.83 2.85
5886 6035 2.268730 GCACAGCTGCCTTTGATAAC 57.731 50.000 15.27 0.00 37.45 1.89
6493 6658 1.086696 CATGGTGGTAGCGTTCCAAG 58.913 55.000 7.23 0.90 36.68 3.61
6514 6679 1.961277 GCAGTCCGTGTGACCCTTG 60.961 63.158 0.00 0.00 45.68 3.61
6515 6680 2.426023 GCAGTCCGTGTGACCCTT 59.574 61.111 0.00 0.00 45.68 3.95
6645 6810 3.157087 GTTCTCATGGTGTTTGGTCCAT 58.843 45.455 0.00 0.00 44.15 3.41
6797 6963 3.895656 TCTCTTCTCCCTTTCTTCACGAA 59.104 43.478 0.00 0.00 0.00 3.85
6800 6966 4.512484 CCATCTCTTCTCCCTTTCTTCAC 58.488 47.826 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.