Multiple sequence alignment - TraesCS5B01G107500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G107500 chr5B 100.000 2470 0 0 1 2470 146280146 146277677 0.000000e+00 4562.0
1 TraesCS5B01G107500 chr5B 93.333 150 10 0 1449 1598 511468851 511468702 3.730000e-54 222.0
2 TraesCS5B01G107500 chr5B 100.000 116 0 0 2761 2876 146277386 146277271 6.240000e-52 215.0
3 TraesCS5B01G107500 chr5B 95.575 113 5 0 1483 1595 50654056 50654168 6.330000e-42 182.0
4 TraesCS5B01G107500 chr5B 93.333 60 3 1 771 830 506313454 506313396 1.420000e-13 87.9
5 TraesCS5B01G107500 chr5B 91.935 62 4 1 768 828 685500985 685501046 5.110000e-13 86.1
6 TraesCS5B01G107500 chr5B 100.000 35 0 0 104 138 146280008 146279974 6.650000e-07 65.8
7 TraesCS5B01G107500 chr5B 100.000 35 0 0 139 173 146280043 146280009 6.650000e-07 65.8
8 TraesCS5B01G107500 chr5D 95.508 1603 22 18 916 2470 134796976 134795376 0.000000e+00 2516.0
9 TraesCS5B01G107500 chr5D 90.099 303 30 0 376 678 134797400 134797098 7.470000e-106 394.0
10 TraesCS5B01G107500 chr5D 84.912 285 19 4 139 407 134797674 134797398 1.700000e-67 267.0
11 TraesCS5B01G107500 chr5D 92.982 114 8 0 25 138 134797753 134797640 1.770000e-37 167.0
12 TraesCS5B01G107500 chr5A 93.581 1075 42 11 1005 2070 158967956 158966900 0.000000e+00 1578.0
13 TraesCS5B01G107500 chr5A 90.252 318 19 8 2159 2470 158950696 158950385 3.450000e-109 405.0
14 TraesCS5B01G107500 chr5A 86.842 114 15 0 2761 2874 158950307 158950194 8.360000e-26 128.0
15 TraesCS5B01G107500 chr6D 81.530 536 94 4 138 671 221868438 221867906 1.220000e-118 436.0
16 TraesCS5B01G107500 chr2B 95.302 149 5 1 1449 1595 526519593 526519741 4.790000e-58 235.0
17 TraesCS5B01G107500 chr6A 93.836 146 9 0 1449 1594 52323655 52323510 1.340000e-53 220.0
18 TraesCS5B01G107500 chr6A 93.836 146 9 0 1449 1594 52328972 52328827 1.340000e-53 220.0
19 TraesCS5B01G107500 chr6A 93.243 148 9 1 1449 1595 16649396 16649249 1.740000e-52 217.0
20 TraesCS5B01G107500 chr4D 91.026 156 5 1 1449 1595 503795907 503795752 4.860000e-48 202.0
21 TraesCS5B01G107500 chr6B 79.562 137 23 3 778 911 195271584 195271450 3.050000e-15 93.5
22 TraesCS5B01G107500 chr7B 81.579 114 18 3 778 888 371931496 371931609 1.100000e-14 91.6
23 TraesCS5B01G107500 chr7B 89.706 68 5 2 764 830 20046711 20046777 5.110000e-13 86.1
24 TraesCS5B01G107500 chr7B 91.935 62 4 1 767 828 470520608 470520668 5.110000e-13 86.1
25 TraesCS5B01G107500 chr7B 89.394 66 5 2 775 839 634271629 634271693 6.600000e-12 82.4
26 TraesCS5B01G107500 chr4B 89.552 67 5 2 764 828 82024229 82024163 1.840000e-12 84.2
27 TraesCS5B01G107500 chr4B 100.000 29 0 0 2232 2260 311352744 311352716 1.000000e-03 54.7
28 TraesCS5B01G107500 chr3B 80.342 117 17 4 778 888 98878291 98878175 1.840000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G107500 chr5B 146277271 146280146 2875 True 1227.15 4562 100.00000 1 2876 4 chr5B.!!$R3 2875
1 TraesCS5B01G107500 chr5D 134795376 134797753 2377 True 836.00 2516 90.87525 25 2470 4 chr5D.!!$R1 2445
2 TraesCS5B01G107500 chr5A 158966900 158967956 1056 True 1578.00 1578 93.58100 1005 2070 1 chr5A.!!$R1 1065
3 TraesCS5B01G107500 chr5A 158950194 158950696 502 True 266.50 405 88.54700 2159 2874 2 chr5A.!!$R2 715
4 TraesCS5B01G107500 chr6D 221867906 221868438 532 True 436.00 436 81.53000 138 671 1 chr6D.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1005 0.032416 TTAGGAACGGAGGGAGGGAG 60.032 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2259 0.096976 CTGTAATGCGGAACAAGGCG 59.903 55.0 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.867109 CTTCCCATGGCCAGGTATAG 57.133 55.000 17.55 6.09 0.00 1.31
20 21 2.057922 CTTCCCATGGCCAGGTATAGT 58.942 52.381 17.55 0.00 0.00 2.12
21 22 1.729586 TCCCATGGCCAGGTATAGTC 58.270 55.000 17.55 0.00 0.00 2.59
22 23 1.223077 TCCCATGGCCAGGTATAGTCT 59.777 52.381 17.55 0.00 0.00 3.24
23 24 2.453212 TCCCATGGCCAGGTATAGTCTA 59.547 50.000 17.55 0.00 0.00 2.59
70 71 2.738846 CACTTGTGTCTCGAAATCCAGG 59.261 50.000 0.00 0.00 0.00 4.45
77 78 2.438392 GTCTCGAAATCCAGGGGGTATT 59.562 50.000 0.00 0.00 34.93 1.89
78 79 2.438021 TCTCGAAATCCAGGGGGTATTG 59.562 50.000 0.00 0.00 34.93 1.90
111 112 3.869912 GCATTTGGAAGAGCTGGACACTA 60.870 47.826 0.00 0.00 0.00 2.74
112 113 3.402628 TTTGGAAGAGCTGGACACTAC 57.597 47.619 0.00 0.00 0.00 2.73
113 114 2.310779 TGGAAGAGCTGGACACTACT 57.689 50.000 0.00 0.00 0.00 2.57
114 115 2.609747 TGGAAGAGCTGGACACTACTT 58.390 47.619 0.00 0.00 0.00 2.24
115 116 3.774734 TGGAAGAGCTGGACACTACTTA 58.225 45.455 0.00 0.00 0.00 2.24
116 117 4.157246 TGGAAGAGCTGGACACTACTTAA 58.843 43.478 0.00 0.00 0.00 1.85
117 118 4.220821 TGGAAGAGCTGGACACTACTTAAG 59.779 45.833 0.00 0.00 0.00 1.85
118 119 4.221041 GGAAGAGCTGGACACTACTTAAGT 59.779 45.833 13.68 13.68 39.81 2.24
133 134 7.891561 ACTACTTAAGTGCAAAATATTTGCCA 58.108 30.769 18.56 9.64 44.32 4.92
134 135 8.028938 ACTACTTAAGTGCAAAATATTTGCCAG 58.971 33.333 18.56 12.92 44.32 4.85
135 136 6.165577 ACTTAAGTGCAAAATATTTGCCAGG 58.834 36.000 21.21 9.59 44.32 4.45
136 137 4.622260 AAGTGCAAAATATTTGCCAGGT 57.378 36.364 21.21 5.33 44.32 4.00
168 169 7.891561 ACTACTTAAGTGCAAAATATTTGCCA 58.108 30.769 18.56 9.64 44.32 4.92
185 186 2.116772 AGGTTGGCAGTGCAGCAT 59.883 55.556 18.61 0.49 35.83 3.79
191 192 0.811219 TGGCAGTGCAGCATCGTATC 60.811 55.000 18.61 0.00 35.83 2.24
193 194 1.269778 GGCAGTGCAGCATCGTATCTA 60.270 52.381 18.61 0.00 35.83 1.98
197 198 2.952310 AGTGCAGCATCGTATCTAGACA 59.048 45.455 0.00 0.00 0.00 3.41
203 204 3.437395 AGCATCGTATCTAGACATCGGAC 59.563 47.826 0.00 0.00 0.00 4.79
232 233 2.695359 GAAACACGGGCTACAAGATCA 58.305 47.619 0.00 0.00 0.00 2.92
242 243 1.067821 CTACAAGATCAGCCGTCTCCC 59.932 57.143 0.00 0.00 0.00 4.30
261 262 1.148949 TGCTTCACTTGCCTGCAGA 59.851 52.632 17.39 0.00 0.00 4.26
284 285 0.884704 AAGACAACGCCGAGCACATT 60.885 50.000 0.00 0.00 0.00 2.71
288 289 1.003262 CAACGCCGAGCACATTTTGG 61.003 55.000 0.00 0.00 0.00 3.28
314 331 2.585330 TGTGTGTACGAGGGAAGTGTA 58.415 47.619 0.00 0.00 0.00 2.90
330 347 5.822519 GGAAGTGTAGCATGGATGTATTCAA 59.177 40.000 0.00 0.00 0.00 2.69
408 454 2.250924 CTCAATGCCAGAAGGGGTTTT 58.749 47.619 0.00 0.00 37.04 2.43
415 461 2.490168 GCCAGAAGGGGTTTTGGTAAGA 60.490 50.000 0.00 0.00 37.04 2.10
449 495 4.083003 TGGGTTCGACATCTTTGTTATTGC 60.083 41.667 0.00 0.00 35.79 3.56
460 506 2.552599 TGTTATTGCGGTGACTTGGA 57.447 45.000 0.00 0.00 0.00 3.53
465 511 1.433053 TTGCGGTGACTTGGACGTTG 61.433 55.000 0.00 0.00 0.00 4.10
475 521 2.014128 CTTGGACGTTGTGGAAACAGT 58.986 47.619 0.00 0.00 44.46 3.55
532 578 1.476891 GGTCGGCTCATCAACTAGTGA 59.523 52.381 0.00 0.00 41.67 3.41
587 633 0.465824 GCTGGCGTAGGAGTAGGAGA 60.466 60.000 0.00 0.00 0.00 3.71
590 636 1.134159 TGGCGTAGGAGTAGGAGAGTC 60.134 57.143 0.00 0.00 0.00 3.36
601 647 5.125097 GGAGTAGGAGAGTCGTCACATTTTA 59.875 44.000 0.00 0.00 0.00 1.52
603 649 7.013083 GGAGTAGGAGAGTCGTCACATTTTATA 59.987 40.741 0.00 0.00 0.00 0.98
605 651 8.746530 AGTAGGAGAGTCGTCACATTTTATAAA 58.253 33.333 0.00 0.00 0.00 1.40
632 678 3.759815 AGCTTTAGTCTAGAGTGGGGA 57.240 47.619 10.51 0.00 0.00 4.81
654 700 0.037303 AATGTGGTGTGGCTGAGGAG 59.963 55.000 0.00 0.00 0.00 3.69
655 701 1.845627 ATGTGGTGTGGCTGAGGAGG 61.846 60.000 0.00 0.00 0.00 4.30
656 702 2.930019 TGGTGTGGCTGAGGAGGG 60.930 66.667 0.00 0.00 0.00 4.30
657 703 2.607750 GGTGTGGCTGAGGAGGGA 60.608 66.667 0.00 0.00 0.00 4.20
658 704 1.997874 GGTGTGGCTGAGGAGGGAT 60.998 63.158 0.00 0.00 0.00 3.85
659 705 1.222936 GTGTGGCTGAGGAGGGATG 59.777 63.158 0.00 0.00 0.00 3.51
660 706 1.229625 TGTGGCTGAGGAGGGATGT 60.230 57.895 0.00 0.00 0.00 3.06
661 707 1.222936 GTGGCTGAGGAGGGATGTG 59.777 63.158 0.00 0.00 0.00 3.21
662 708 1.229625 TGGCTGAGGAGGGATGTGT 60.230 57.895 0.00 0.00 0.00 3.72
663 709 1.222936 GGCTGAGGAGGGATGTGTG 59.777 63.158 0.00 0.00 0.00 3.82
664 710 1.451028 GCTGAGGAGGGATGTGTGC 60.451 63.158 0.00 0.00 0.00 4.57
665 711 1.985614 CTGAGGAGGGATGTGTGCA 59.014 57.895 0.00 0.00 0.00 4.57
666 712 0.545171 CTGAGGAGGGATGTGTGCAT 59.455 55.000 0.00 0.00 38.18 3.96
674 720 5.015026 GAGGGATGTGTGCATCTTCCTCT 62.015 52.174 17.70 15.41 46.13 3.69
675 721 6.444484 GAGGGATGTGTGCATCTTCCTCTT 62.444 50.000 17.70 10.19 46.13 2.85
706 752 2.287769 GCATCTTCCTCTTGGCTTCTC 58.712 52.381 0.00 0.00 0.00 2.87
719 765 7.346751 TCTTGGCTTCTCTTGTAAATTGTTT 57.653 32.000 0.00 0.00 0.00 2.83
720 766 7.202526 TCTTGGCTTCTCTTGTAAATTGTTTG 58.797 34.615 0.00 0.00 0.00 2.93
724 770 6.239036 GGCTTCTCTTGTAAATTGTTTGTCCT 60.239 38.462 0.00 0.00 0.00 3.85
729 775 8.621286 TCTCTTGTAAATTGTTTGTCCTTCTTC 58.379 33.333 0.00 0.00 0.00 2.87
756 802 3.126831 AGATAAGCTATGCTGTTGACGC 58.873 45.455 0.00 0.00 39.62 5.19
760 806 0.371645 GCTATGCTGTTGACGCACTC 59.628 55.000 3.53 0.00 40.65 3.51
761 807 1.713597 CTATGCTGTTGACGCACTCA 58.286 50.000 3.53 0.00 40.65 3.41
824 915 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
825 916 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
826 917 8.986991 AGTCTTTGTAGAGATTCCACTATGAAT 58.013 33.333 0.00 0.00 37.66 2.57
836 927 7.721286 GATTCCACTATGAATCTAAGTGTGG 57.279 40.000 12.24 0.00 44.65 4.17
837 928 6.867519 TTCCACTATGAATCTAAGTGTGGA 57.132 37.500 7.72 7.72 47.00 4.02
839 930 7.437713 TCCACTATGAATCTAAGTGTGGATT 57.562 36.000 7.72 0.00 44.82 3.01
840 931 7.500992 TCCACTATGAATCTAAGTGTGGATTC 58.499 38.462 7.72 6.01 46.62 2.52
851 942 8.924511 TCTAAGTGTGGATTCATTCTTTTTCT 57.075 30.769 0.17 0.00 0.00 2.52
852 943 9.003658 TCTAAGTGTGGATTCATTCTTTTTCTC 57.996 33.333 0.17 0.00 0.00 2.87
853 944 6.581171 AGTGTGGATTCATTCTTTTTCTCC 57.419 37.500 0.00 0.00 0.00 3.71
854 945 5.182001 AGTGTGGATTCATTCTTTTTCTCCG 59.818 40.000 0.00 0.00 0.00 4.63
855 946 5.048713 GTGTGGATTCATTCTTTTTCTCCGT 60.049 40.000 0.00 0.00 0.00 4.69
856 947 6.148811 GTGTGGATTCATTCTTTTTCTCCGTA 59.851 38.462 0.00 0.00 0.00 4.02
857 948 6.884295 TGTGGATTCATTCTTTTTCTCCGTAT 59.116 34.615 0.00 0.00 0.00 3.06
858 949 7.148255 TGTGGATTCATTCTTTTTCTCCGTATG 60.148 37.037 0.00 0.00 0.00 2.39
859 950 6.884295 TGGATTCATTCTTTTTCTCCGTATGT 59.116 34.615 0.00 0.00 0.00 2.29
860 951 8.044309 TGGATTCATTCTTTTTCTCCGTATGTA 58.956 33.333 0.00 0.00 0.00 2.29
861 952 8.552034 GGATTCATTCTTTTTCTCCGTATGTAG 58.448 37.037 0.00 0.00 0.00 2.74
862 953 9.099454 GATTCATTCTTTTTCTCCGTATGTAGT 57.901 33.333 0.00 0.00 0.00 2.73
863 954 8.475331 TTCATTCTTTTTCTCCGTATGTAGTC 57.525 34.615 0.00 0.00 0.00 2.59
864 955 7.837863 TCATTCTTTTTCTCCGTATGTAGTCT 58.162 34.615 0.00 0.00 0.00 3.24
865 956 8.963725 TCATTCTTTTTCTCCGTATGTAGTCTA 58.036 33.333 0.00 0.00 0.00 2.59
866 957 9.021863 CATTCTTTTTCTCCGTATGTAGTCTAC 57.978 37.037 2.81 2.81 0.00 2.59
867 958 7.093322 TCTTTTTCTCCGTATGTAGTCTACC 57.907 40.000 7.56 0.00 0.00 3.18
868 959 5.841957 TTTTCTCCGTATGTAGTCTACCC 57.158 43.478 7.56 0.00 0.00 3.69
869 960 4.508551 TTCTCCGTATGTAGTCTACCCA 57.491 45.455 7.56 0.00 0.00 4.51
870 961 4.508551 TCTCCGTATGTAGTCTACCCAA 57.491 45.455 7.56 0.00 0.00 4.12
871 962 5.057843 TCTCCGTATGTAGTCTACCCAAT 57.942 43.478 7.56 0.00 0.00 3.16
872 963 4.825634 TCTCCGTATGTAGTCTACCCAATG 59.174 45.833 7.56 0.00 0.00 2.82
873 964 4.539726 TCCGTATGTAGTCTACCCAATGT 58.460 43.478 7.56 0.00 0.00 2.71
874 965 5.693961 TCCGTATGTAGTCTACCCAATGTA 58.306 41.667 7.56 0.00 0.00 2.29
875 966 6.128486 TCCGTATGTAGTCTACCCAATGTAA 58.872 40.000 7.56 0.00 0.00 2.41
876 967 6.779049 TCCGTATGTAGTCTACCCAATGTAAT 59.221 38.462 7.56 0.00 0.00 1.89
877 968 7.040201 TCCGTATGTAGTCTACCCAATGTAATC 60.040 40.741 7.56 0.00 0.00 1.75
878 969 7.039923 CCGTATGTAGTCTACCCAATGTAATCT 60.040 40.741 7.56 0.00 0.00 2.40
879 970 8.021973 CGTATGTAGTCTACCCAATGTAATCTC 58.978 40.741 7.56 0.00 0.00 2.75
880 971 9.080097 GTATGTAGTCTACCCAATGTAATCTCT 57.920 37.037 7.56 0.00 0.00 3.10
882 973 8.461249 TGTAGTCTACCCAATGTAATCTCTAC 57.539 38.462 7.56 0.00 0.00 2.59
883 974 8.057011 TGTAGTCTACCCAATGTAATCTCTACA 58.943 37.037 7.56 0.00 32.46 2.74
884 975 7.973048 AGTCTACCCAATGTAATCTCTACAA 57.027 36.000 0.00 0.00 0.00 2.41
885 976 8.375493 AGTCTACCCAATGTAATCTCTACAAA 57.625 34.615 0.00 0.00 0.00 2.83
886 977 8.478877 AGTCTACCCAATGTAATCTCTACAAAG 58.521 37.037 0.00 0.00 0.00 2.77
887 978 8.475639 GTCTACCCAATGTAATCTCTACAAAGA 58.524 37.037 0.00 0.00 0.00 2.52
904 995 8.195436 TCTACAAAGAGATACATTTAGGAACGG 58.805 37.037 0.00 0.00 0.00 4.44
905 996 6.942976 ACAAAGAGATACATTTAGGAACGGA 58.057 36.000 0.00 0.00 0.00 4.69
906 997 7.042335 ACAAAGAGATACATTTAGGAACGGAG 58.958 38.462 0.00 0.00 0.00 4.63
907 998 5.793030 AGAGATACATTTAGGAACGGAGG 57.207 43.478 0.00 0.00 0.00 4.30
908 999 4.589374 AGAGATACATTTAGGAACGGAGGG 59.411 45.833 0.00 0.00 0.00 4.30
909 1000 4.553678 AGATACATTTAGGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
910 1001 4.589374 AGATACATTTAGGAACGGAGGGAG 59.411 45.833 0.00 0.00 0.00 4.30
911 1002 1.838077 ACATTTAGGAACGGAGGGAGG 59.162 52.381 0.00 0.00 0.00 4.30
912 1003 1.141053 CATTTAGGAACGGAGGGAGGG 59.859 57.143 0.00 0.00 0.00 4.30
913 1004 0.414629 TTTAGGAACGGAGGGAGGGA 59.585 55.000 0.00 0.00 0.00 4.20
914 1005 0.032416 TTAGGAACGGAGGGAGGGAG 60.032 60.000 0.00 0.00 0.00 4.30
953 1044 4.933505 TCAAGCCATTGTTTTCATGTGA 57.066 36.364 0.00 0.00 37.68 3.58
954 1045 5.273674 TCAAGCCATTGTTTTCATGTGAA 57.726 34.783 0.00 0.00 37.68 3.18
955 1046 5.668471 TCAAGCCATTGTTTTCATGTGAAA 58.332 33.333 4.16 4.16 38.33 2.69
956 1047 6.111382 TCAAGCCATTGTTTTCATGTGAAAA 58.889 32.000 14.95 14.95 41.47 2.29
987 1094 9.928618 TGGTTTTCATGTTATATTCTCCCATAA 57.071 29.630 0.00 0.00 0.00 1.90
1066 1173 1.690352 AGTGTACTACCGGCTTGTTGT 59.310 47.619 0.00 0.00 0.00 3.32
1811 1927 2.659897 CGATGCTAGCTGGACGGC 60.660 66.667 17.23 0.00 0.00 5.68
2061 2185 0.461548 AGATGCACGTGTCGGATCAT 59.538 50.000 18.38 10.53 0.00 2.45
2062 2186 1.134699 AGATGCACGTGTCGGATCATT 60.135 47.619 18.38 0.02 0.00 2.57
2063 2187 1.004610 GATGCACGTGTCGGATCATTG 60.005 52.381 18.38 0.00 0.00 2.82
2064 2188 0.320334 TGCACGTGTCGGATCATTGT 60.320 50.000 18.38 0.00 0.00 2.71
2065 2189 0.095245 GCACGTGTCGGATCATTGTG 59.905 55.000 18.38 0.00 33.16 3.33
2066 2190 1.428448 CACGTGTCGGATCATTGTGT 58.572 50.000 7.58 0.00 0.00 3.72
2067 2191 1.126662 CACGTGTCGGATCATTGTGTG 59.873 52.381 7.58 0.00 0.00 3.82
2068 2192 1.000394 ACGTGTCGGATCATTGTGTGA 60.000 47.619 0.00 0.00 42.06 3.58
2069 2193 1.390123 CGTGTCGGATCATTGTGTGAC 59.610 52.381 0.00 0.00 40.28 3.67
2113 2259 3.067106 ACGTGCATTATATACAGCTGCC 58.933 45.455 15.27 0.00 31.89 4.85
2142 2289 0.930310 CGCATTACAGTCCCATCGTG 59.070 55.000 0.00 0.00 0.00 4.35
2445 2602 8.143835 CCTAAACAATCACTTGGAAAAACTGAT 58.856 33.333 0.00 0.00 36.64 2.90
2795 2952 2.019984 CTTCCATTGAGCTTAGCCCAC 58.980 52.381 0.00 0.00 0.00 4.61
2798 2955 1.815421 ATTGAGCTTAGCCCACGCG 60.815 57.895 3.53 3.53 41.18 6.01
2802 2959 2.967615 GCTTAGCCCACGCGGATC 60.968 66.667 12.47 0.00 41.18 3.36
2821 2978 4.803426 GACGGCGGAGTGGCTCTG 62.803 72.222 13.24 0.87 42.02 3.35
2829 2986 0.324943 GGAGTGGCTCTGGCAAACTA 59.675 55.000 0.00 0.00 40.46 2.24
2830 2987 1.065126 GGAGTGGCTCTGGCAAACTAT 60.065 52.381 0.00 0.00 40.46 2.12
2831 2988 2.012673 GAGTGGCTCTGGCAAACTATG 58.987 52.381 0.00 0.00 40.46 2.23
2839 2996 0.112218 TGGCAAACTATGGTGGTGCT 59.888 50.000 15.01 0.00 37.42 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.039084 GACTATACCTGGCCATGGGAAG 59.961 54.545 17.65 14.95 0.00 3.46
1 2 2.054799 GACTATACCTGGCCATGGGAA 58.945 52.381 17.65 9.02 0.00 3.97
2 3 1.223077 AGACTATACCTGGCCATGGGA 59.777 52.381 17.65 12.89 0.00 4.37
3 4 1.734655 AGACTATACCTGGCCATGGG 58.265 55.000 20.97 16.10 0.00 4.00
5 6 3.006967 GGTGTAGACTATACCTGGCCATG 59.993 52.174 18.53 6.06 37.04 3.66
6 7 3.116707 AGGTGTAGACTATACCTGGCCAT 60.117 47.826 25.44 5.18 46.84 4.40
7 8 2.246588 AGGTGTAGACTATACCTGGCCA 59.753 50.000 25.44 4.71 46.84 5.36
8 9 2.960163 AGGTGTAGACTATACCTGGCC 58.040 52.381 25.44 0.00 46.84 5.36
13 14 5.903810 CCTCACAAAGGTGTAGACTATACC 58.096 45.833 18.23 18.23 45.45 2.73
50 51 2.289694 CCCTGGATTTCGAGACACAAGT 60.290 50.000 0.00 0.00 0.00 3.16
70 71 3.436700 GCAAGTTGCATACAATACCCC 57.563 47.619 22.90 0.00 44.26 4.95
111 112 6.165577 CCTGGCAAATATTTTGCACTTAAGT 58.834 36.000 22.22 1.12 46.58 2.24
112 113 6.165577 ACCTGGCAAATATTTTGCACTTAAG 58.834 36.000 22.22 0.00 46.58 1.85
113 114 6.107901 ACCTGGCAAATATTTTGCACTTAA 57.892 33.333 22.22 5.68 46.58 1.85
114 115 5.736951 ACCTGGCAAATATTTTGCACTTA 57.263 34.783 22.22 8.17 46.58 2.24
115 116 4.622260 ACCTGGCAAATATTTTGCACTT 57.378 36.364 22.22 5.01 46.58 3.16
116 117 4.622260 AACCTGGCAAATATTTTGCACT 57.378 36.364 22.22 3.20 46.58 4.40
117 118 4.083377 CCAAACCTGGCAAATATTTTGCAC 60.083 41.667 22.22 13.91 46.58 4.57
118 119 4.070716 CCAAACCTGGCAAATATTTTGCA 58.929 39.130 22.22 10.57 46.58 4.08
119 120 4.154015 GTCCAAACCTGGCAAATATTTTGC 59.846 41.667 14.88 14.88 43.17 3.68
120 121 5.179182 GTGTCCAAACCTGGCAAATATTTTG 59.821 40.000 0.00 0.00 43.17 2.44
121 122 5.071653 AGTGTCCAAACCTGGCAAATATTTT 59.928 36.000 0.00 0.00 43.17 1.82
122 123 4.592778 AGTGTCCAAACCTGGCAAATATTT 59.407 37.500 0.00 0.00 43.17 1.40
123 124 4.159557 AGTGTCCAAACCTGGCAAATATT 58.840 39.130 0.00 0.00 43.17 1.28
124 125 3.778265 AGTGTCCAAACCTGGCAAATAT 58.222 40.909 0.00 0.00 43.17 1.28
125 126 3.237268 AGTGTCCAAACCTGGCAAATA 57.763 42.857 0.00 0.00 43.17 1.40
126 127 2.086610 AGTGTCCAAACCTGGCAAAT 57.913 45.000 0.00 0.00 43.17 2.32
127 128 2.092103 AGTAGTGTCCAAACCTGGCAAA 60.092 45.455 0.00 0.00 43.17 3.68
128 129 1.493022 AGTAGTGTCCAAACCTGGCAA 59.507 47.619 0.00 0.00 43.17 4.52
129 130 1.136828 AGTAGTGTCCAAACCTGGCA 58.863 50.000 0.00 0.00 43.17 4.92
130 131 2.271944 AAGTAGTGTCCAAACCTGGC 57.728 50.000 0.00 0.00 43.17 4.85
131 132 4.969484 ACTTAAGTAGTGTCCAAACCTGG 58.031 43.478 6.26 0.00 38.87 4.45
143 144 7.891561 TGGCAAATATTTTGCACTTAAGTAGT 58.108 30.769 22.22 0.00 46.58 2.73
146 147 6.165577 CCTGGCAAATATTTTGCACTTAAGT 58.834 36.000 22.22 1.12 46.58 2.24
166 167 3.677648 GCTGCACTGCCAACCTGG 61.678 66.667 0.00 0.00 41.55 4.45
168 169 1.975407 GATGCTGCACTGCCAACCT 60.975 57.895 3.57 0.00 0.00 3.50
185 186 2.410939 CGGTCCGATGTCTAGATACGA 58.589 52.381 4.91 0.00 0.00 3.43
191 192 1.231221 CTCTCCGGTCCGATGTCTAG 58.769 60.000 14.39 0.37 0.00 2.43
193 194 2.122167 GCTCTCCGGTCCGATGTCT 61.122 63.158 14.39 0.00 0.00 3.41
197 198 2.050350 TTTCGCTCTCCGGTCCGAT 61.050 57.895 14.39 0.00 37.59 4.18
203 204 2.809601 CCGTGTTTCGCTCTCCGG 60.810 66.667 0.00 0.00 38.35 5.14
232 233 2.604686 TGAAGCAGGGAGACGGCT 60.605 61.111 0.00 0.00 42.56 5.52
242 243 1.579932 CTGCAGGCAAGTGAAGCAG 59.420 57.895 5.57 0.00 45.44 4.24
261 262 0.602638 TGCTCGGCGTTGTCTTCATT 60.603 50.000 6.85 0.00 0.00 2.57
284 285 3.562141 CCTCGTACACACATTGAACCAAA 59.438 43.478 0.00 0.00 0.00 3.28
288 289 3.034721 TCCCTCGTACACACATTGAAC 57.965 47.619 0.00 0.00 0.00 3.18
314 331 8.806146 AGTTAAGTTTTTGAATACATCCATGCT 58.194 29.630 0.00 0.00 0.00 3.79
330 347 9.366216 GGTCTTTTCATGTTCAAGTTAAGTTTT 57.634 29.630 0.00 0.00 0.00 2.43
349 366 7.714813 CAGGTTGTTATCCATTTTTGGTCTTTT 59.285 33.333 0.00 0.00 0.00 2.27
351 368 6.326323 ACAGGTTGTTATCCATTTTTGGTCTT 59.674 34.615 0.00 0.00 0.00 3.01
408 454 3.207778 CCCACGTTTGAGTTTCTTACCA 58.792 45.455 0.00 0.00 0.00 3.25
415 461 1.667212 GTCGAACCCACGTTTGAGTTT 59.333 47.619 0.00 0.00 42.02 2.66
449 495 1.495584 CCACAACGTCCAAGTCACCG 61.496 60.000 0.00 0.00 0.00 4.94
460 506 1.169577 TTGCACTGTTTCCACAACGT 58.830 45.000 0.00 0.00 30.36 3.99
465 511 1.277495 GCGCATTGCACTGTTTCCAC 61.277 55.000 9.69 0.00 45.45 4.02
475 521 1.780025 TTGAAGACACGCGCATTGCA 61.780 50.000 5.73 0.00 46.97 4.08
603 649 8.308207 CCACTCTAGACTAAAGCTTACTCTTTT 58.692 37.037 0.00 0.00 37.46 2.27
605 651 6.378848 CCCACTCTAGACTAAAGCTTACTCTT 59.621 42.308 0.00 0.00 0.00 2.85
612 658 3.011934 ACTCCCCACTCTAGACTAAAGCT 59.988 47.826 0.00 0.00 0.00 3.74
632 678 1.003580 CCTCAGCCACACCACATTACT 59.996 52.381 0.00 0.00 0.00 2.24
655 701 4.487931 CCAAGAGGAAGATGCACACATCC 61.488 52.174 8.38 8.38 45.32 3.51
656 702 2.681848 CCAAGAGGAAGATGCACACATC 59.318 50.000 0.00 0.00 44.89 3.06
657 703 2.619849 CCCAAGAGGAAGATGCACACAT 60.620 50.000 0.00 0.00 37.14 3.21
658 704 1.271543 CCCAAGAGGAAGATGCACACA 60.272 52.381 0.00 0.00 38.24 3.72
659 705 1.457346 CCCAAGAGGAAGATGCACAC 58.543 55.000 0.00 0.00 38.24 3.82
660 706 0.329261 CCCCAAGAGGAAGATGCACA 59.671 55.000 0.00 0.00 38.24 4.57
661 707 0.620556 TCCCCAAGAGGAAGATGCAC 59.379 55.000 0.00 0.00 38.24 4.57
662 708 1.213678 CATCCCCAAGAGGAAGATGCA 59.786 52.381 0.00 0.00 40.04 3.96
663 709 1.213926 ACATCCCCAAGAGGAAGATGC 59.786 52.381 11.83 0.00 43.63 3.91
664 710 2.240667 ACACATCCCCAAGAGGAAGATG 59.759 50.000 10.86 10.86 44.53 2.90
665 711 2.240667 CACACATCCCCAAGAGGAAGAT 59.759 50.000 0.00 0.00 40.04 2.40
666 712 1.630369 CACACATCCCCAAGAGGAAGA 59.370 52.381 0.00 0.00 40.04 2.87
667 713 1.952367 GCACACATCCCCAAGAGGAAG 60.952 57.143 0.00 0.00 40.04 3.46
668 714 0.038166 GCACACATCCCCAAGAGGAA 59.962 55.000 0.00 0.00 40.04 3.36
669 715 1.133181 TGCACACATCCCCAAGAGGA 61.133 55.000 0.00 0.00 41.18 3.71
670 716 0.033796 ATGCACACATCCCCAAGAGG 60.034 55.000 0.00 0.00 0.00 3.69
671 717 1.386533 GATGCACACATCCCCAAGAG 58.613 55.000 0.00 0.00 45.94 2.85
672 718 3.575506 GATGCACACATCCCCAAGA 57.424 52.632 0.00 0.00 45.94 3.02
694 740 6.566197 ACAATTTACAAGAGAAGCCAAGAG 57.434 37.500 0.00 0.00 0.00 2.85
729 775 8.642885 CGTCAACAGCATAGCTTATCTTTATAG 58.357 37.037 0.00 0.00 36.40 1.31
742 788 1.391485 GTGAGTGCGTCAACAGCATAG 59.609 52.381 0.00 0.00 46.96 2.23
748 794 0.313987 AGATCGTGAGTGCGTCAACA 59.686 50.000 0.00 0.00 36.74 3.33
798 889 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
799 890 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
800 891 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
801 892 9.255304 GATTCATAGTGGAATCTCTACAAAGAC 57.745 37.037 8.28 0.00 46.15 3.01
816 907 7.721286 GAATCCACACTTAGATTCATAGTGG 57.279 40.000 17.26 0.00 45.05 4.00
825 916 9.525826 AGAAAAAGAATGAATCCACACTTAGAT 57.474 29.630 0.00 0.00 0.00 1.98
826 917 8.924511 AGAAAAAGAATGAATCCACACTTAGA 57.075 30.769 0.00 0.00 0.00 2.10
827 918 8.239998 GGAGAAAAAGAATGAATCCACACTTAG 58.760 37.037 0.00 0.00 0.00 2.18
828 919 7.094805 CGGAGAAAAAGAATGAATCCACACTTA 60.095 37.037 0.00 0.00 0.00 2.24
829 920 6.294176 CGGAGAAAAAGAATGAATCCACACTT 60.294 38.462 0.00 0.00 0.00 3.16
830 921 5.182001 CGGAGAAAAAGAATGAATCCACACT 59.818 40.000 0.00 0.00 0.00 3.55
831 922 5.048713 ACGGAGAAAAAGAATGAATCCACAC 60.049 40.000 0.00 0.00 0.00 3.82
832 923 5.070001 ACGGAGAAAAAGAATGAATCCACA 58.930 37.500 0.00 0.00 0.00 4.17
833 924 5.629079 ACGGAGAAAAAGAATGAATCCAC 57.371 39.130 0.00 0.00 0.00 4.02
834 925 6.884295 ACATACGGAGAAAAAGAATGAATCCA 59.116 34.615 0.00 0.00 0.00 3.41
835 926 7.321745 ACATACGGAGAAAAAGAATGAATCC 57.678 36.000 0.00 0.00 0.00 3.01
836 927 9.099454 ACTACATACGGAGAAAAAGAATGAATC 57.901 33.333 0.00 0.00 0.00 2.52
837 928 9.099454 GACTACATACGGAGAAAAAGAATGAAT 57.901 33.333 0.00 0.00 0.00 2.57
838 929 8.311836 AGACTACATACGGAGAAAAAGAATGAA 58.688 33.333 0.00 0.00 0.00 2.57
839 930 7.837863 AGACTACATACGGAGAAAAAGAATGA 58.162 34.615 0.00 0.00 0.00 2.57
840 931 9.021863 GTAGACTACATACGGAGAAAAAGAATG 57.978 37.037 7.79 0.00 0.00 2.67
841 932 8.196103 GGTAGACTACATACGGAGAAAAAGAAT 58.804 37.037 14.48 0.00 0.00 2.40
842 933 7.363268 GGGTAGACTACATACGGAGAAAAAGAA 60.363 40.741 14.48 0.00 0.00 2.52
843 934 6.096001 GGGTAGACTACATACGGAGAAAAAGA 59.904 42.308 14.48 0.00 0.00 2.52
844 935 6.127535 TGGGTAGACTACATACGGAGAAAAAG 60.128 42.308 14.48 0.00 0.00 2.27
845 936 5.716228 TGGGTAGACTACATACGGAGAAAAA 59.284 40.000 14.48 0.00 0.00 1.94
846 937 5.263599 TGGGTAGACTACATACGGAGAAAA 58.736 41.667 14.48 0.00 0.00 2.29
847 938 4.858850 TGGGTAGACTACATACGGAGAAA 58.141 43.478 14.48 0.00 0.00 2.52
848 939 4.508551 TGGGTAGACTACATACGGAGAA 57.491 45.455 14.48 0.00 0.00 2.87
849 940 4.508551 TTGGGTAGACTACATACGGAGA 57.491 45.455 14.48 0.00 0.00 3.71
850 941 4.583489 ACATTGGGTAGACTACATACGGAG 59.417 45.833 14.48 1.09 0.00 4.63
851 942 4.539726 ACATTGGGTAGACTACATACGGA 58.460 43.478 14.48 0.00 0.00 4.69
852 943 4.931661 ACATTGGGTAGACTACATACGG 57.068 45.455 14.48 3.62 0.00 4.02
853 944 7.883217 AGATTACATTGGGTAGACTACATACG 58.117 38.462 14.48 1.63 32.49 3.06
854 945 9.080097 AGAGATTACATTGGGTAGACTACATAC 57.920 37.037 14.48 4.87 32.49 2.39
856 947 9.080097 GTAGAGATTACATTGGGTAGACTACAT 57.920 37.037 14.48 0.00 32.49 2.29
857 948 8.057011 TGTAGAGATTACATTGGGTAGACTACA 58.943 37.037 14.48 0.00 35.41 2.74
858 949 8.461249 TGTAGAGATTACATTGGGTAGACTAC 57.539 38.462 3.86 3.86 32.49 2.73
859 950 9.483489 TTTGTAGAGATTACATTGGGTAGACTA 57.517 33.333 0.00 0.00 32.49 2.59
860 951 7.973048 TTGTAGAGATTACATTGGGTAGACT 57.027 36.000 0.00 0.00 32.49 3.24
861 952 8.475639 TCTTTGTAGAGATTACATTGGGTAGAC 58.524 37.037 0.00 0.00 32.49 2.59
862 953 8.603898 TCTTTGTAGAGATTACATTGGGTAGA 57.396 34.615 0.00 0.00 32.49 2.59
878 969 8.195436 CCGTTCCTAAATGTATCTCTTTGTAGA 58.805 37.037 0.00 0.00 0.00 2.59
879 970 8.195436 TCCGTTCCTAAATGTATCTCTTTGTAG 58.805 37.037 0.00 0.00 0.00 2.74
880 971 8.070034 TCCGTTCCTAAATGTATCTCTTTGTA 57.930 34.615 0.00 0.00 0.00 2.41
881 972 6.942976 TCCGTTCCTAAATGTATCTCTTTGT 58.057 36.000 0.00 0.00 0.00 2.83
882 973 6.480320 CCTCCGTTCCTAAATGTATCTCTTTG 59.520 42.308 0.00 0.00 0.00 2.77
883 974 6.408206 CCCTCCGTTCCTAAATGTATCTCTTT 60.408 42.308 0.00 0.00 0.00 2.52
884 975 5.070580 CCCTCCGTTCCTAAATGTATCTCTT 59.929 44.000 0.00 0.00 0.00 2.85
885 976 4.589374 CCCTCCGTTCCTAAATGTATCTCT 59.411 45.833 0.00 0.00 0.00 3.10
886 977 4.587684 TCCCTCCGTTCCTAAATGTATCTC 59.412 45.833 0.00 0.00 0.00 2.75
887 978 4.553678 TCCCTCCGTTCCTAAATGTATCT 58.446 43.478 0.00 0.00 0.00 1.98
888 979 4.262506 CCTCCCTCCGTTCCTAAATGTATC 60.263 50.000 0.00 0.00 0.00 2.24
889 980 3.646637 CCTCCCTCCGTTCCTAAATGTAT 59.353 47.826 0.00 0.00 0.00 2.29
890 981 3.036091 CCTCCCTCCGTTCCTAAATGTA 58.964 50.000 0.00 0.00 0.00 2.29
891 982 1.838077 CCTCCCTCCGTTCCTAAATGT 59.162 52.381 0.00 0.00 0.00 2.71
892 983 1.141053 CCCTCCCTCCGTTCCTAAATG 59.859 57.143 0.00 0.00 0.00 2.32
893 984 1.009183 TCCCTCCCTCCGTTCCTAAAT 59.991 52.381 0.00 0.00 0.00 1.40
894 985 0.414629 TCCCTCCCTCCGTTCCTAAA 59.585 55.000 0.00 0.00 0.00 1.85
895 986 0.032416 CTCCCTCCCTCCGTTCCTAA 60.032 60.000 0.00 0.00 0.00 2.69
896 987 1.219824 ACTCCCTCCCTCCGTTCCTA 61.220 60.000 0.00 0.00 0.00 2.94
897 988 1.219824 TACTCCCTCCCTCCGTTCCT 61.220 60.000 0.00 0.00 0.00 3.36
898 989 0.756070 CTACTCCCTCCCTCCGTTCC 60.756 65.000 0.00 0.00 0.00 3.62
899 990 0.258194 TCTACTCCCTCCCTCCGTTC 59.742 60.000 0.00 0.00 0.00 3.95
900 991 0.935194 ATCTACTCCCTCCCTCCGTT 59.065 55.000 0.00 0.00 0.00 4.44
901 992 0.479378 GATCTACTCCCTCCCTCCGT 59.521 60.000 0.00 0.00 0.00 4.69
902 993 0.774908 AGATCTACTCCCTCCCTCCG 59.225 60.000 0.00 0.00 0.00 4.63
903 994 3.338110 AAAGATCTACTCCCTCCCTCC 57.662 52.381 0.00 0.00 0.00 4.30
904 995 4.290942 TGAAAAGATCTACTCCCTCCCTC 58.709 47.826 0.00 0.00 0.00 4.30
905 996 4.354208 TGAAAAGATCTACTCCCTCCCT 57.646 45.455 0.00 0.00 0.00 4.20
906 997 5.437191 TTTGAAAAGATCTACTCCCTCCC 57.563 43.478 0.00 0.00 0.00 4.30
907 998 6.477253 AGTTTTGAAAAGATCTACTCCCTCC 58.523 40.000 0.00 0.00 0.00 4.30
908 999 7.661847 TGAAGTTTTGAAAAGATCTACTCCCTC 59.338 37.037 0.00 0.00 0.00 4.30
909 1000 7.518188 TGAAGTTTTGAAAAGATCTACTCCCT 58.482 34.615 0.00 0.00 0.00 4.20
910 1001 7.745620 TGAAGTTTTGAAAAGATCTACTCCC 57.254 36.000 0.00 0.00 0.00 4.30
911 1002 7.805542 GCTTGAAGTTTTGAAAAGATCTACTCC 59.194 37.037 0.00 0.00 0.00 3.85
912 1003 7.805542 GGCTTGAAGTTTTGAAAAGATCTACTC 59.194 37.037 0.00 0.00 0.00 2.59
913 1004 7.285401 TGGCTTGAAGTTTTGAAAAGATCTACT 59.715 33.333 0.00 0.00 0.00 2.57
914 1005 7.425606 TGGCTTGAAGTTTTGAAAAGATCTAC 58.574 34.615 0.00 0.00 0.00 2.59
957 1048 8.137437 GGGAGAATATAACATGAAAACCACATG 58.863 37.037 0.00 0.00 46.96 3.21
960 1051 7.639113 TGGGAGAATATAACATGAAAACCAC 57.361 36.000 0.00 0.00 0.00 4.16
961 1052 9.928618 TTATGGGAGAATATAACATGAAAACCA 57.071 29.630 0.00 0.00 0.00 3.67
1066 1173 2.232696 TGGCAGCGTCAGAGTAATACAA 59.767 45.455 0.00 0.00 0.00 2.41
1195 1302 1.966451 GCTGGTTTGCGTGGTAGCT 60.966 57.895 0.00 0.00 38.13 3.32
1536 1643 2.250741 GAGCAAGAGGTCCAGGCTCC 62.251 65.000 11.07 0.00 43.87 4.70
2061 2185 1.713597 CGATAGCTGCAGTCACACAA 58.286 50.000 16.64 0.00 0.00 3.33
2062 2186 3.423848 CGATAGCTGCAGTCACACA 57.576 52.632 16.64 0.00 0.00 3.72
2113 2259 0.096976 CTGTAATGCGGAACAAGGCG 59.903 55.000 0.00 0.00 0.00 5.52
2296 2450 4.756502 ACTAGTCTTCTCGTATTTTGGGC 58.243 43.478 0.00 0.00 0.00 5.36
2375 2530 9.264719 ACTTTCATCAAATTCAGGAACATTTTC 57.735 29.630 0.00 0.00 0.00 2.29
2417 2572 7.435192 CAGTTTTTCCAAGTGATTGTTTAGGAC 59.565 37.037 0.00 0.00 0.00 3.85
2445 2602 4.329545 GGGCCGTCCAAGCAGTCA 62.330 66.667 0.00 0.00 35.00 3.41
2776 2933 1.678728 CGTGGGCTAAGCTCAATGGAA 60.679 52.381 0.00 0.00 42.30 3.53
2808 2965 4.704833 TTGCCAGAGCCACTCCGC 62.705 66.667 0.00 0.00 38.69 5.54
2811 2968 2.012673 CATAGTTTGCCAGAGCCACTC 58.987 52.381 0.00 0.00 38.69 3.51
2812 2969 1.340405 CCATAGTTTGCCAGAGCCACT 60.340 52.381 0.00 0.00 38.69 4.00
2813 2970 1.098050 CCATAGTTTGCCAGAGCCAC 58.902 55.000 0.00 0.00 38.69 5.01
2821 2978 1.256812 AAGCACCACCATAGTTTGCC 58.743 50.000 0.00 0.00 34.28 4.52
2824 2981 3.886505 TCGAAAAAGCACCACCATAGTTT 59.113 39.130 0.00 0.00 0.00 2.66
2829 2986 2.270352 TCTCGAAAAAGCACCACCAT 57.730 45.000 0.00 0.00 0.00 3.55
2830 2987 1.946768 CTTCTCGAAAAAGCACCACCA 59.053 47.619 0.00 0.00 0.00 4.17
2831 2988 1.266989 CCTTCTCGAAAAAGCACCACC 59.733 52.381 2.40 0.00 0.00 4.61
2839 2996 2.173996 ACAGGAACCCCTTCTCGAAAAA 59.826 45.455 0.00 0.00 42.02 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.