Multiple sequence alignment - TraesCS5B01G107400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G107400 chr5B 100.000 2944 0 0 529 3472 146269542 146266599 0.000000e+00 5437
1 TraesCS5B01G107400 chr5B 100.000 113 0 0 1 113 146270070 146269958 3.510000e-50 209
2 TraesCS5B01G107400 chr5D 92.615 2979 127 39 529 3472 134787457 134784537 0.000000e+00 4196
3 TraesCS5B01G107400 chr5D 100.000 110 0 0 1 110 134787575 134787466 1.630000e-48 204
4 TraesCS5B01G107400 chr5D 88.182 110 7 5 1511 1615 7421459 7421567 3.640000e-25 126
5 TraesCS5B01G107400 chr5A 94.479 1902 67 15 1590 3472 158931943 158930061 0.000000e+00 2896
6 TraesCS5B01G107400 chr5A 85.556 810 43 35 741 1512 158932724 158931951 0.000000e+00 780
7 TraesCS5B01G107400 chr5A 95.652 92 4 0 19 110 158933298 158933207 7.760000e-32 148
8 TraesCS5B01G107400 chr5A 79.424 243 15 11 529 741 158933196 158932959 4.670000e-29 139
9 TraesCS5B01G107400 chr5A 92.553 94 3 3 1503 1592 24414653 24414746 7.820000e-27 132
10 TraesCS5B01G107400 chr3B 91.837 98 6 2 1504 1601 60865617 60865712 6.040000e-28 135
11 TraesCS5B01G107400 chr1D 93.548 93 2 3 1508 1596 197821656 197821564 6.040000e-28 135
12 TraesCS5B01G107400 chr1D 90.196 102 4 4 1509 1606 479227821 479227722 1.010000e-25 128
13 TraesCS5B01G107400 chr7D 93.407 91 2 2 1507 1593 80504125 80504215 7.820000e-27 132
14 TraesCS5B01G107400 chr1B 88.596 114 4 6 1509 1617 47517343 47517452 2.810000e-26 130
15 TraesCS5B01G107400 chr4D 90.196 102 5 4 1495 1592 211031194 211031094 1.010000e-25 128
16 TraesCS5B01G107400 chr4A 83.704 135 16 4 1511 1641 443843996 443843864 4.710000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G107400 chr5B 146266599 146270070 3471 True 2823.00 5437 100.00000 1 3472 2 chr5B.!!$R1 3471
1 TraesCS5B01G107400 chr5D 134784537 134787575 3038 True 2200.00 4196 96.30750 1 3472 2 chr5D.!!$R1 3471
2 TraesCS5B01G107400 chr5A 158930061 158933298 3237 True 990.75 2896 88.77775 19 3472 4 chr5A.!!$R1 3453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 647 0.603707 CTGCCACGTCATCACCAGTT 60.604 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2533 2895 0.108138 ACCACGCAGCAGAAGGATAC 60.108 55.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 113 5.046878 ACACTTAACGAGAGAGAGAGAGAGA 60.047 44.000 0.00 0.00 0.00 3.10
111 114 5.520288 CACTTAACGAGAGAGAGAGAGAGAG 59.480 48.000 0.00 0.00 0.00 3.20
112 115 5.421056 ACTTAACGAGAGAGAGAGAGAGAGA 59.579 44.000 0.00 0.00 0.00 3.10
586 590 2.029623 CCCAAGATGGAAATCAGCTGG 58.970 52.381 15.13 0.00 41.91 4.85
638 647 0.603707 CTGCCACGTCATCACCAGTT 60.604 55.000 0.00 0.00 0.00 3.16
736 769 5.738909 ACAATCTCATTCCCACTTGACTAG 58.261 41.667 0.00 0.00 0.00 2.57
750 1018 6.255453 CCACTTGACTAGTACTACTACTCGTC 59.745 46.154 0.00 4.78 42.29 4.20
828 1110 3.434319 CCTCGCGGCAGCAAACAT 61.434 61.111 10.08 0.00 45.49 2.71
952 1234 0.878523 TGTGTTGGAAGAACGCCTCG 60.879 55.000 0.00 0.00 0.00 4.63
953 1235 1.959226 TGTTGGAAGAACGCCTCGC 60.959 57.895 0.00 0.00 0.00 5.03
954 1236 2.358247 TTGGAAGAACGCCTCGCC 60.358 61.111 0.00 0.00 0.00 5.54
955 1237 3.171828 TTGGAAGAACGCCTCGCCA 62.172 57.895 0.00 0.00 33.28 5.69
956 1238 2.125106 GGAAGAACGCCTCGCCAT 60.125 61.111 0.00 0.00 0.00 4.40
957 1239 2.174319 GGAAGAACGCCTCGCCATC 61.174 63.158 0.00 0.00 0.00 3.51
958 1240 1.447838 GAAGAACGCCTCGCCATCA 60.448 57.895 0.00 0.00 0.00 3.07
959 1241 1.696832 GAAGAACGCCTCGCCATCAC 61.697 60.000 0.00 0.00 0.00 3.06
960 1242 3.195698 GAACGCCTCGCCATCACC 61.196 66.667 0.00 0.00 0.00 4.02
966 1248 2.446848 CCTCGCCATCACCCCATCT 61.447 63.158 0.00 0.00 0.00 2.90
1161 1467 2.793484 TACCACTTCCCCCTTCCCCC 62.793 65.000 0.00 0.00 0.00 5.40
1162 1468 2.204306 CACTTCCCCCTTCCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
1166 1472 3.922305 TTCCCCCTTCCCCCTTCCC 62.922 68.421 0.00 0.00 0.00 3.97
1193 1499 2.562298 CTCAGTCCTCCTGCCTCATATC 59.438 54.545 0.00 0.00 41.25 1.63
1194 1500 2.091111 TCAGTCCTCCTGCCTCATATCA 60.091 50.000 0.00 0.00 41.25 2.15
1195 1501 2.905085 CAGTCCTCCTGCCTCATATCAT 59.095 50.000 0.00 0.00 33.59 2.45
1196 1502 4.092279 CAGTCCTCCTGCCTCATATCATA 58.908 47.826 0.00 0.00 33.59 2.15
1197 1503 4.081752 CAGTCCTCCTGCCTCATATCATAC 60.082 50.000 0.00 0.00 33.59 2.39
1198 1504 3.196685 GTCCTCCTGCCTCATATCATACC 59.803 52.174 0.00 0.00 0.00 2.73
1199 1505 2.167281 CCTCCTGCCTCATATCATACCG 59.833 54.545 0.00 0.00 0.00 4.02
1200 1506 1.550524 TCCTGCCTCATATCATACCGC 59.449 52.381 0.00 0.00 0.00 5.68
1201 1507 1.276138 CCTGCCTCATATCATACCGCA 59.724 52.381 0.00 0.00 0.00 5.69
1202 1508 2.093288 CCTGCCTCATATCATACCGCAT 60.093 50.000 0.00 0.00 0.00 4.73
1203 1509 3.603532 CTGCCTCATATCATACCGCATT 58.396 45.455 0.00 0.00 0.00 3.56
1204 1510 3.599343 TGCCTCATATCATACCGCATTC 58.401 45.455 0.00 0.00 0.00 2.67
1205 1511 3.261643 TGCCTCATATCATACCGCATTCT 59.738 43.478 0.00 0.00 0.00 2.40
1206 1512 4.256920 GCCTCATATCATACCGCATTCTT 58.743 43.478 0.00 0.00 0.00 2.52
1207 1513 4.331168 GCCTCATATCATACCGCATTCTTC 59.669 45.833 0.00 0.00 0.00 2.87
1208 1514 5.482006 CCTCATATCATACCGCATTCTTCA 58.518 41.667 0.00 0.00 0.00 3.02
1209 1515 5.579904 CCTCATATCATACCGCATTCTTCAG 59.420 44.000 0.00 0.00 0.00 3.02
1218 1524 3.438087 ACCGCATTCTTCAGTTTGAGATG 59.562 43.478 0.00 0.00 0.00 2.90
1273 1579 1.324736 CAGCTCGCGAATTACAACTCC 59.675 52.381 11.33 0.00 0.00 3.85
1330 1636 1.448717 GCTCTTCAAGAGGACCGGC 60.449 63.158 16.46 0.00 42.54 6.13
1401 1718 6.347160 GCATTCCTTTGCAATTCTTCAGAAAC 60.347 38.462 0.00 0.00 42.31 2.78
1410 1727 6.942005 TGCAATTCTTCAGAAACTAATGGAGA 59.058 34.615 0.00 0.00 37.61 3.71
1472 1789 5.472301 AGGAATGTTGGGAATGAGGTATT 57.528 39.130 0.00 0.00 0.00 1.89
1508 1829 9.770097 CCTCTAACATCTATCTATTCTTTGCAA 57.230 33.333 0.00 0.00 0.00 4.08
1526 1867 2.998670 GCAAAGTACTCCCTCCGTAAAC 59.001 50.000 0.00 0.00 0.00 2.01
1527 1868 3.306571 GCAAAGTACTCCCTCCGTAAACT 60.307 47.826 0.00 0.00 0.00 2.66
1537 1878 8.773033 ACTCCCTCCGTAAACTAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
1585 1930 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1592 1937 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
1593 1938 9.512588 CTTATATTAGTTTACGGAGGGAGTAGA 57.487 37.037 0.00 0.00 0.00 2.59
1595 1940 6.897706 ATTAGTTTACGGAGGGAGTAGATC 57.102 41.667 0.00 0.00 0.00 2.75
1596 1941 4.246712 AGTTTACGGAGGGAGTAGATCA 57.753 45.455 0.00 0.00 0.00 2.92
1597 1942 4.805744 AGTTTACGGAGGGAGTAGATCAT 58.194 43.478 0.00 0.00 0.00 2.45
1598 1943 5.209659 AGTTTACGGAGGGAGTAGATCATT 58.790 41.667 0.00 0.00 0.00 2.57
1599 1944 6.371278 AGTTTACGGAGGGAGTAGATCATTA 58.629 40.000 0.00 0.00 0.00 1.90
1600 1945 6.490721 AGTTTACGGAGGGAGTAGATCATTAG 59.509 42.308 0.00 0.00 0.00 1.73
1601 1946 4.456662 ACGGAGGGAGTAGATCATTAGT 57.543 45.455 0.00 0.00 0.00 2.24
1602 1947 5.579753 ACGGAGGGAGTAGATCATTAGTA 57.420 43.478 0.00 0.00 0.00 1.82
1603 1948 6.142259 ACGGAGGGAGTAGATCATTAGTAT 57.858 41.667 0.00 0.00 0.00 2.12
1604 1949 6.553857 ACGGAGGGAGTAGATCATTAGTATT 58.446 40.000 0.00 0.00 0.00 1.89
1605 1950 6.434652 ACGGAGGGAGTAGATCATTAGTATTG 59.565 42.308 0.00 0.00 0.00 1.90
1606 1951 6.434652 CGGAGGGAGTAGATCATTAGTATTGT 59.565 42.308 0.00 0.00 0.00 2.71
1699 2046 0.392193 AACCATGCAAGAGAGCTCCG 60.392 55.000 10.93 0.00 34.99 4.63
1703 2050 0.322975 ATGCAAGAGAGCTCCGTGTT 59.677 50.000 10.93 0.00 34.99 3.32
1713 2060 6.043411 AGAGAGCTCCGTGTTATTCATTAAC 58.957 40.000 10.93 0.00 40.59 2.01
1742 2089 4.380781 TGCAACGCCGGATCCGAA 62.381 61.111 35.42 8.54 42.83 4.30
2117 2478 2.751259 TCATCTGCTGCATTTCCAAGTC 59.249 45.455 1.31 0.00 0.00 3.01
2133 2494 5.441500 TCCAAGTCGGGCATTCAATTATTA 58.558 37.500 0.00 0.00 34.36 0.98
2533 2895 0.388134 GCATTTGCACCAGAGCAGTG 60.388 55.000 0.00 0.00 46.54 3.66
2538 2900 0.250234 TGCACCAGAGCAGTGTATCC 59.750 55.000 0.00 0.00 40.11 2.59
2562 2924 0.944386 GCTGCGTGGTTCTTTTGAGA 59.056 50.000 0.00 0.00 0.00 3.27
2639 3001 6.116806 ACGCATGTAAACCTTGTTATATCCA 58.883 36.000 0.00 0.00 0.00 3.41
2640 3002 6.770785 ACGCATGTAAACCTTGTTATATCCAT 59.229 34.615 0.00 0.00 0.00 3.41
2750 3112 8.109560 AGAATAGGTAATAGGGGCAAAACTTA 57.890 34.615 0.00 0.00 0.00 2.24
2872 3234 8.860088 GGCCCATTAATTAATCAGTACTGAAAT 58.140 33.333 28.43 20.65 43.58 2.17
3085 3449 1.824230 GGGTGTGGCATCATTAGCAAA 59.176 47.619 0.00 0.00 0.00 3.68
3245 3612 7.555554 AGAGGATGGACAAAATTAGTTCAGATG 59.444 37.037 0.00 0.00 0.00 2.90
3274 3641 4.371681 TCAGATAGGGCCTTTTCTACCTT 58.628 43.478 13.45 0.00 34.59 3.50
3322 3690 4.019792 TCTCATTGCCAGCTGAAAAGTA 57.980 40.909 17.39 0.00 0.00 2.24
3345 3713 3.869272 GGCCATCAGAACGCTGCG 61.869 66.667 21.91 21.91 42.01 5.18
3386 3756 3.267031 CCTGTCCCTGGGAAGAAAACTAT 59.733 47.826 19.06 0.00 31.38 2.12
3429 3799 7.904558 ATGTAGTGTATGAGAGGATCAGAAA 57.095 36.000 0.00 0.00 42.53 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
546 549 2.500098 GGGATTTGAGGGGGCTAAAAAC 59.500 50.000 0.00 0.00 0.00 2.43
586 590 4.252878 CATTTGGGGTGAAAGGTAAATGC 58.747 43.478 0.00 0.00 31.43 3.56
638 647 2.745281 GCTAAGCAAAATCCACGTGGTA 59.255 45.455 32.74 20.21 36.34 3.25
736 769 2.871633 GAGCCAGGACGAGTAGTAGTAC 59.128 54.545 0.00 0.00 0.00 2.73
906 1188 3.589654 TTGGCTTCGCTCCCGACAG 62.590 63.158 0.00 0.00 44.30 3.51
952 1234 1.980765 TCTGATAGATGGGGTGATGGC 59.019 52.381 0.00 0.00 0.00 4.40
953 1235 2.027377 GCTCTGATAGATGGGGTGATGG 60.027 54.545 0.00 0.00 0.00 3.51
954 1236 2.636403 TGCTCTGATAGATGGGGTGATG 59.364 50.000 0.00 0.00 0.00 3.07
955 1237 2.905085 CTGCTCTGATAGATGGGGTGAT 59.095 50.000 0.00 0.00 0.00 3.06
956 1238 2.323599 CTGCTCTGATAGATGGGGTGA 58.676 52.381 0.00 0.00 0.00 4.02
957 1239 1.270732 GCTGCTCTGATAGATGGGGTG 60.271 57.143 0.00 0.00 0.00 4.61
958 1240 1.055040 GCTGCTCTGATAGATGGGGT 58.945 55.000 0.00 0.00 0.00 4.95
959 1241 1.002201 CTGCTGCTCTGATAGATGGGG 59.998 57.143 0.00 0.00 0.00 4.96
960 1242 1.608542 GCTGCTGCTCTGATAGATGGG 60.609 57.143 8.53 0.00 36.03 4.00
991 1275 0.729690 GAAGTCGCCATTGCCTCTTC 59.270 55.000 5.36 5.36 36.92 2.87
992 1276 1.021390 CGAAGTCGCCATTGCCTCTT 61.021 55.000 0.00 0.00 32.26 2.85
1145 1441 1.857348 AAGGGGGAAGGGGGAAGTG 60.857 63.158 0.00 0.00 0.00 3.16
1161 1467 0.252927 AGGACTGAGGAAGGGGGAAG 60.253 60.000 0.00 0.00 0.00 3.46
1162 1468 0.252742 GAGGACTGAGGAAGGGGGAA 60.253 60.000 0.00 0.00 0.00 3.97
1193 1499 4.631377 TCTCAAACTGAAGAATGCGGTATG 59.369 41.667 0.00 0.00 0.00 2.39
1194 1500 4.832248 TCTCAAACTGAAGAATGCGGTAT 58.168 39.130 0.00 0.00 0.00 2.73
1195 1501 4.265904 TCTCAAACTGAAGAATGCGGTA 57.734 40.909 0.00 0.00 0.00 4.02
1196 1502 3.126001 TCTCAAACTGAAGAATGCGGT 57.874 42.857 0.00 0.00 0.00 5.68
1197 1503 3.438087 ACATCTCAAACTGAAGAATGCGG 59.562 43.478 0.00 0.00 0.00 5.69
1198 1504 4.152938 TGACATCTCAAACTGAAGAATGCG 59.847 41.667 0.00 0.00 0.00 4.73
1199 1505 5.180868 AGTGACATCTCAAACTGAAGAATGC 59.819 40.000 0.00 0.00 0.00 3.56
1200 1506 6.798315 AGTGACATCTCAAACTGAAGAATG 57.202 37.500 0.00 0.00 0.00 2.67
1201 1507 6.769822 ACAAGTGACATCTCAAACTGAAGAAT 59.230 34.615 0.00 0.00 0.00 2.40
1202 1508 6.115446 ACAAGTGACATCTCAAACTGAAGAA 58.885 36.000 0.00 0.00 0.00 2.52
1203 1509 5.674525 ACAAGTGACATCTCAAACTGAAGA 58.325 37.500 0.00 0.00 0.00 2.87
1204 1510 5.998454 ACAAGTGACATCTCAAACTGAAG 57.002 39.130 0.00 0.00 0.00 3.02
1205 1511 5.879777 TGAACAAGTGACATCTCAAACTGAA 59.120 36.000 0.00 0.00 0.00 3.02
1206 1512 5.427378 TGAACAAGTGACATCTCAAACTGA 58.573 37.500 0.00 0.00 0.00 3.41
1207 1513 5.739752 TGAACAAGTGACATCTCAAACTG 57.260 39.130 0.00 0.00 0.00 3.16
1208 1514 5.882557 AGTTGAACAAGTGACATCTCAAACT 59.117 36.000 0.00 0.00 0.00 2.66
1209 1515 6.124088 AGTTGAACAAGTGACATCTCAAAC 57.876 37.500 0.00 0.00 0.00 2.93
1218 1524 7.016361 ACATAGAACAAGTTGAACAAGTGAC 57.984 36.000 10.54 0.00 0.00 3.67
1273 1579 2.733858 GCAGTAGAGCACTCCTTCGAAG 60.734 54.545 18.51 18.51 34.26 3.79
1330 1636 1.018226 CGAAGCTCTTGTCCAGGCTG 61.018 60.000 7.75 7.75 35.08 4.85
1401 1718 6.095860 TGCCTGAATCAACATTTCTCCATTAG 59.904 38.462 0.00 0.00 0.00 1.73
1410 1727 3.499338 TGGAGTGCCTGAATCAACATTT 58.501 40.909 0.00 0.00 34.31 2.32
1492 1813 8.207545 AGGGAGTACTTTGCAAAGAATAGATAG 58.792 37.037 38.78 15.75 39.31 2.08
1503 1824 1.053424 ACGGAGGGAGTACTTTGCAA 58.947 50.000 0.00 0.00 0.00 4.08
1508 1829 9.646522 TTATATTAGTTTACGGAGGGAGTACTT 57.353 33.333 0.00 0.00 0.00 2.24
1564 1909 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1575 1920 4.246712 TGATCTACTCCCTCCGTAAACT 57.753 45.455 0.00 0.00 0.00 2.66
1582 1927 7.784470 ACAATACTAATGATCTACTCCCTCC 57.216 40.000 0.00 0.00 0.00 4.30
1621 1966 2.494073 TCTTGGGTGTGTGTTTTTGGAC 59.506 45.455 0.00 0.00 0.00 4.02
1668 2015 6.757947 TCTCTTGCATGGTTTGAAAAGAAAAG 59.242 34.615 0.00 0.00 32.43 2.27
1679 2026 1.831580 GGAGCTCTCTTGCATGGTTT 58.168 50.000 14.64 0.00 34.99 3.27
1703 2050 8.856153 TGCACTACCTTTCTTGTTAATGAATA 57.144 30.769 0.00 0.00 0.00 1.75
1713 2060 1.069227 GGCGTTGCACTACCTTTCTTG 60.069 52.381 0.00 0.00 0.00 3.02
1721 2068 2.171725 GGATCCGGCGTTGCACTAC 61.172 63.158 6.01 0.00 0.00 2.73
1722 2069 2.185867 GGATCCGGCGTTGCACTA 59.814 61.111 6.01 0.00 0.00 2.74
1742 2089 7.069986 TCTATTGAACTAAGCTCCCTATCTGT 58.930 38.462 0.00 0.00 0.00 3.41
1963 2312 4.902448 AGTACCCTCTCAATTGGATAGACC 59.098 45.833 5.42 0.00 39.54 3.85
2033 2390 4.997395 CAGCTAAAAAGTAGCAGTCCAGAA 59.003 41.667 8.00 0.00 42.68 3.02
2117 2478 9.533253 AAAAGAAGATTAATAATTGAATGCCCG 57.467 29.630 0.00 0.00 0.00 6.13
2209 2571 1.664659 GTGTCATGATCAGAGCACTGC 59.335 52.381 6.24 0.00 43.17 4.40
2342 2704 0.957362 GGTGCTTGCAGAAGAGCTTT 59.043 50.000 9.40 0.00 39.60 3.51
2492 2854 4.501571 GCAGAAGGGCTCGTTATTCATCTA 60.502 45.833 0.00 0.00 0.00 1.98
2533 2895 0.108138 ACCACGCAGCAGAAGGATAC 60.108 55.000 0.00 0.00 0.00 2.24
2538 2900 0.947244 AAAGAACCACGCAGCAGAAG 59.053 50.000 0.00 0.00 0.00 2.85
2547 2909 5.181690 TGGAAAATCTCAAAAGAACCACG 57.818 39.130 0.00 0.00 34.49 4.94
2562 2924 4.701651 TGCACTTGATCTCGATTGGAAAAT 59.298 37.500 0.00 0.00 0.00 1.82
2639 3001 6.986817 CGAACCAGGTAGAGATATTTTGACAT 59.013 38.462 0.00 0.00 0.00 3.06
2640 3002 6.153851 TCGAACCAGGTAGAGATATTTTGACA 59.846 38.462 0.00 0.00 0.00 3.58
2717 3079 6.879993 GCCCCTATTACCTATTCTTCTTTAGC 59.120 42.308 0.00 0.00 0.00 3.09
2721 3083 6.841781 TTGCCCCTATTACCTATTCTTCTT 57.158 37.500 0.00 0.00 0.00 2.52
2722 3084 6.841781 TTTGCCCCTATTACCTATTCTTCT 57.158 37.500 0.00 0.00 0.00 2.85
2723 3085 7.061054 AGTTTTGCCCCTATTACCTATTCTTC 58.939 38.462 0.00 0.00 0.00 2.87
2872 3234 8.615878 ATTTGTACAGCTTGTTGTAATGTCTA 57.384 30.769 0.00 0.00 35.47 2.59
2907 3269 5.121611 TGTTCTATCATCGACGCACAAAAAT 59.878 36.000 0.00 0.00 0.00 1.82
2972 3334 3.512496 TCAGTACTGTATCCCCAACACA 58.488 45.455 21.99 0.00 0.00 3.72
3085 3449 6.261826 GCCAGTGATATCTTAAGATGTTTGCT 59.738 38.462 25.22 15.12 36.05 3.91
3245 3612 5.772169 AGAAAAGGCCCTATCTGATTTATGC 59.228 40.000 0.00 0.00 0.00 3.14
3274 3641 2.354203 GGGGCGCAAATAAATTGGAACA 60.354 45.455 10.83 0.00 39.54 3.18
3322 3690 1.237285 GCGTTCTGATGGCCTTGTGT 61.237 55.000 3.32 0.00 0.00 3.72
3345 3713 2.428890 AGGTTGGTCGTCTCATGATCTC 59.571 50.000 0.00 0.00 0.00 2.75
3386 3756 2.928801 TTTCAGCTGGCAAGTGACTA 57.071 45.000 15.13 0.00 0.00 2.59
3429 3799 8.974238 TGATTGATCCTTGAAATTTAGAGCAAT 58.026 29.630 16.73 16.73 43.88 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.