Multiple sequence alignment - TraesCS5B01G107100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G107100 | chr5B | 100.000 | 4643 | 0 | 0 | 1 | 4643 | 145829778 | 145825136 | 0.000000e+00 | 8575 |
1 | TraesCS5B01G107100 | chr5B | 92.115 | 799 | 56 | 3 | 1 | 793 | 592868648 | 592867851 | 0.000000e+00 | 1120 |
2 | TraesCS5B01G107100 | chr5B | 96.532 | 173 | 6 | 0 | 1431 | 1603 | 640759355 | 640759183 | 2.110000e-73 | 287 |
3 | TraesCS5B01G107100 | chr5B | 96.552 | 174 | 5 | 1 | 1427 | 1599 | 706458114 | 706458287 | 2.110000e-73 | 287 |
4 | TraesCS5B01G107100 | chr5D | 95.036 | 2921 | 124 | 12 | 1598 | 4502 | 134474566 | 134471651 | 0.000000e+00 | 4571 |
5 | TraesCS5B01G107100 | chr5D | 95.942 | 616 | 20 | 2 | 824 | 1435 | 134475182 | 134474568 | 0.000000e+00 | 994 |
6 | TraesCS5B01G107100 | chr5A | 94.222 | 1869 | 99 | 9 | 1984 | 3848 | 158248324 | 158246461 | 0.000000e+00 | 2844 |
7 | TraesCS5B01G107100 | chr5A | 92.500 | 680 | 28 | 5 | 780 | 1436 | 158251874 | 158251195 | 0.000000e+00 | 952 |
8 | TraesCS5B01G107100 | chr5A | 93.750 | 240 | 15 | 0 | 1608 | 1847 | 158251182 | 158250943 | 1.230000e-95 | 361 |
9 | TraesCS5B01G107100 | chr5A | 94.972 | 179 | 7 | 2 | 1420 | 1597 | 546778482 | 546778659 | 3.540000e-71 | 279 |
10 | TraesCS5B01G107100 | chr5A | 93.130 | 131 | 8 | 1 | 3840 | 3969 | 158238708 | 158238578 | 1.710000e-44 | 191 |
11 | TraesCS5B01G107100 | chr5A | 93.043 | 115 | 8 | 0 | 4163 | 4277 | 158238405 | 158238291 | 7.990000e-38 | 169 |
12 | TraesCS5B01G107100 | chr3B | 92.593 | 810 | 42 | 6 | 1 | 793 | 741700636 | 741701444 | 0.000000e+00 | 1147 |
13 | TraesCS5B01G107100 | chr3B | 92.250 | 800 | 53 | 6 | 1 | 793 | 664036237 | 664035440 | 0.000000e+00 | 1125 |
14 | TraesCS5B01G107100 | chr1B | 92.732 | 798 | 46 | 5 | 7 | 793 | 44017758 | 44016962 | 0.000000e+00 | 1142 |
15 | TraesCS5B01G107100 | chr2B | 93.544 | 759 | 43 | 6 | 1 | 755 | 782133288 | 782134044 | 0.000000e+00 | 1125 |
16 | TraesCS5B01G107100 | chr2B | 97.059 | 170 | 5 | 0 | 1435 | 1604 | 214378247 | 214378078 | 2.110000e-73 | 287 |
17 | TraesCS5B01G107100 | chr7B | 93.438 | 762 | 42 | 7 | 1 | 755 | 586572965 | 586573725 | 0.000000e+00 | 1123 |
18 | TraesCS5B01G107100 | chr6B | 93.642 | 755 | 40 | 7 | 7 | 755 | 460379360 | 460378608 | 0.000000e+00 | 1122 |
19 | TraesCS5B01G107100 | chr6B | 91.909 | 791 | 58 | 5 | 7 | 793 | 245593976 | 245593188 | 0.000000e+00 | 1101 |
20 | TraesCS5B01G107100 | chr6B | 98.795 | 166 | 2 | 0 | 1432 | 1597 | 468734820 | 468734655 | 3.510000e-76 | 296 |
21 | TraesCS5B01G107100 | chr6B | 98.204 | 167 | 3 | 0 | 1434 | 1600 | 229680947 | 229680781 | 4.540000e-75 | 292 |
22 | TraesCS5B01G107100 | chr4B | 93.430 | 761 | 43 | 6 | 1 | 755 | 107751685 | 107752444 | 0.000000e+00 | 1122 |
23 | TraesCS5B01G107100 | chr4B | 97.619 | 168 | 4 | 0 | 1432 | 1599 | 461850253 | 461850086 | 5.880000e-74 | 289 |
24 | TraesCS5B01G107100 | chr3A | 98.802 | 167 | 2 | 0 | 1431 | 1597 | 731100881 | 731100715 | 9.770000e-77 | 298 |
25 | TraesCS5B01G107100 | chr6D | 98.225 | 169 | 3 | 0 | 1429 | 1597 | 81746936 | 81746768 | 3.510000e-76 | 296 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G107100 | chr5B | 145825136 | 145829778 | 4642 | True | 8575.000000 | 8575 | 100.000000 | 1 | 4643 | 1 | chr5B.!!$R1 | 4642 |
1 | TraesCS5B01G107100 | chr5B | 592867851 | 592868648 | 797 | True | 1120.000000 | 1120 | 92.115000 | 1 | 793 | 1 | chr5B.!!$R2 | 792 |
2 | TraesCS5B01G107100 | chr5D | 134471651 | 134475182 | 3531 | True | 2782.500000 | 4571 | 95.489000 | 824 | 4502 | 2 | chr5D.!!$R1 | 3678 |
3 | TraesCS5B01G107100 | chr5A | 158246461 | 158251874 | 5413 | True | 1385.666667 | 2844 | 93.490667 | 780 | 3848 | 3 | chr5A.!!$R2 | 3068 |
4 | TraesCS5B01G107100 | chr3B | 741700636 | 741701444 | 808 | False | 1147.000000 | 1147 | 92.593000 | 1 | 793 | 1 | chr3B.!!$F1 | 792 |
5 | TraesCS5B01G107100 | chr3B | 664035440 | 664036237 | 797 | True | 1125.000000 | 1125 | 92.250000 | 1 | 793 | 1 | chr3B.!!$R1 | 792 |
6 | TraesCS5B01G107100 | chr1B | 44016962 | 44017758 | 796 | True | 1142.000000 | 1142 | 92.732000 | 7 | 793 | 1 | chr1B.!!$R1 | 786 |
7 | TraesCS5B01G107100 | chr2B | 782133288 | 782134044 | 756 | False | 1125.000000 | 1125 | 93.544000 | 1 | 755 | 1 | chr2B.!!$F1 | 754 |
8 | TraesCS5B01G107100 | chr7B | 586572965 | 586573725 | 760 | False | 1123.000000 | 1123 | 93.438000 | 1 | 755 | 1 | chr7B.!!$F1 | 754 |
9 | TraesCS5B01G107100 | chr6B | 460378608 | 460379360 | 752 | True | 1122.000000 | 1122 | 93.642000 | 7 | 755 | 1 | chr6B.!!$R3 | 748 |
10 | TraesCS5B01G107100 | chr6B | 245593188 | 245593976 | 788 | True | 1101.000000 | 1101 | 91.909000 | 7 | 793 | 1 | chr6B.!!$R2 | 786 |
11 | TraesCS5B01G107100 | chr4B | 107751685 | 107752444 | 759 | False | 1122.000000 | 1122 | 93.430000 | 1 | 755 | 1 | chr4B.!!$F1 | 754 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
266 | 272 | 0.461961 | CGGCACAAAAAGTTTGGGGA | 59.538 | 50.000 | 5.2 | 0.0 | 0.00 | 4.81 | F |
1151 | 1208 | 1.447314 | CCACGTTCGGGTAAGCCTC | 60.447 | 63.158 | 0.0 | 0.0 | 34.45 | 4.70 | F |
1752 | 1815 | 0.468226 | TCTTTGACAGCGTTCCCACT | 59.532 | 50.000 | 0.0 | 0.0 | 0.00 | 4.00 | F |
2940 | 5522 | 2.115343 | ATTTTTCCCTGAGCCGAGTC | 57.885 | 50.000 | 0.0 | 0.0 | 0.00 | 3.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1211 | 1273 | 1.044725 | GCAACGTTCAAATCGCACAG | 58.955 | 50.000 | 0.00 | 0.0 | 0.00 | 3.66 | R |
2227 | 4807 | 2.113860 | AGTGTGCATGCCTACGAAAT | 57.886 | 45.000 | 16.68 | 0.0 | 0.00 | 2.17 | R |
3024 | 5606 | 2.965562 | AGAGAGCTACATAAGACCCCC | 58.034 | 52.381 | 0.00 | 0.0 | 0.00 | 5.40 | R |
4413 | 7005 | 0.035343 | AGACGGAGAGGACATCACGA | 60.035 | 55.000 | 10.45 | 0.0 | 35.38 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
42 | 43 | 1.079057 | GGGGAACAGGAGAAGACGC | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
48 | 49 | 2.600769 | AGGAGAAGACGCCCGTGT | 60.601 | 61.111 | 0.00 | 0.00 | 36.64 | 4.49 |
104 | 108 | 2.289341 | CGGGGTAGGGGGAATCCT | 59.711 | 66.667 | 0.00 | 0.00 | 40.79 | 3.24 |
247 | 252 | 6.751888 | ACAATTCGAGCACAATATTTTTAGGC | 59.248 | 34.615 | 0.00 | 0.00 | 0.00 | 3.93 |
253 | 258 | 3.674682 | GCACAATATTTTTAGGCGGCACA | 60.675 | 43.478 | 13.08 | 0.00 | 0.00 | 4.57 |
266 | 272 | 0.461961 | CGGCACAAAAAGTTTGGGGA | 59.538 | 50.000 | 5.20 | 0.00 | 0.00 | 4.81 |
329 | 335 | 9.084533 | TGCTTATTTTAACTATTGTTGGACCTT | 57.915 | 29.630 | 2.59 | 0.00 | 37.59 | 3.50 |
550 | 556 | 2.661176 | TCATTAGGGGGAGGTCACTT | 57.339 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
591 | 597 | 8.116026 | AGGTGTTACATAATCTTCCCATTTCTT | 58.884 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
648 | 654 | 8.492673 | TCACACTATCCATTAATTCAGTCAAC | 57.507 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
680 | 687 | 8.412456 | CACAAGTCCATACATTATTGCCAATTA | 58.588 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
734 | 769 | 3.004839 | TGTGTGTGTTAGAGAGAGAGTGC | 59.995 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
838 | 888 | 5.413309 | ACAATCCAGAAGACGAGAGAATT | 57.587 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
911 | 961 | 1.980772 | CGTCCTCCCCACGGTACTT | 60.981 | 63.158 | 0.00 | 0.00 | 33.46 | 2.24 |
1151 | 1208 | 1.447314 | CCACGTTCGGGTAAGCCTC | 60.447 | 63.158 | 0.00 | 0.00 | 34.45 | 4.70 |
1157 | 1214 | 1.804748 | GTTCGGGTAAGCCTCTTTGTG | 59.195 | 52.381 | 0.00 | 0.00 | 34.45 | 3.33 |
1162 | 1219 | 1.674322 | TAAGCCTCTTTGTGCGGCC | 60.674 | 57.895 | 0.00 | 0.00 | 44.84 | 6.13 |
1179 | 1236 | 1.901650 | GCCGAGGTGCAAGACGAAAG | 61.902 | 60.000 | 8.78 | 0.00 | 0.00 | 2.62 |
1211 | 1273 | 5.299531 | AGTTTTTGGGCTCTTACTTCTTGTC | 59.700 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1420 | 1482 | 2.766263 | TGGTCATCGGATGCTCTTAGTT | 59.234 | 45.455 | 13.15 | 0.00 | 0.00 | 2.24 |
1437 | 1499 | 9.877178 | GCTCTTAGTTTGGTGCATATATATACT | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
1440 | 1502 | 9.601217 | CTTAGTTTGGTGCATATATATACTCCC | 57.399 | 37.037 | 10.31 | 4.29 | 0.00 | 4.30 |
1441 | 1503 | 7.814693 | AGTTTGGTGCATATATATACTCCCT | 57.185 | 36.000 | 10.31 | 0.70 | 0.00 | 4.20 |
1442 | 1504 | 7.852263 | AGTTTGGTGCATATATATACTCCCTC | 58.148 | 38.462 | 10.31 | 3.41 | 0.00 | 4.30 |
1443 | 1505 | 6.808321 | TTGGTGCATATATATACTCCCTCC | 57.192 | 41.667 | 10.31 | 2.30 | 0.00 | 4.30 |
1444 | 1506 | 4.893524 | TGGTGCATATATATACTCCCTCCG | 59.106 | 45.833 | 10.31 | 0.00 | 0.00 | 4.63 |
1447 | 1509 | 6.461231 | GGTGCATATATATACTCCCTCCGTTC | 60.461 | 46.154 | 0.00 | 0.00 | 0.00 | 3.95 |
1448 | 1510 | 5.597182 | TGCATATATATACTCCCTCCGTTCC | 59.403 | 44.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1449 | 1511 | 5.834204 | GCATATATATACTCCCTCCGTTCCT | 59.166 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1450 | 1512 | 7.002879 | GCATATATATACTCCCTCCGTTCCTA | 58.997 | 42.308 | 0.00 | 0.00 | 0.00 | 2.94 |
1451 | 1513 | 7.504911 | GCATATATATACTCCCTCCGTTCCTAA | 59.495 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
1452 | 1514 | 9.417561 | CATATATATACTCCCTCCGTTCCTAAA | 57.582 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
1458 | 1520 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
1459 | 1521 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1460 | 1522 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
1461 | 1523 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1462 | 1524 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1463 | 1525 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
1464 | 1526 | 7.441458 | CCCTCCGTTCCTAAATATAAGTCTTTG | 59.559 | 40.741 | 0.00 | 0.00 | 0.00 | 2.77 |
1465 | 1527 | 7.985752 | CCTCCGTTCCTAAATATAAGTCTTTGT | 59.014 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
1481 | 1543 | 7.962995 | AGTCTTTGTAGAGATTCCACTATGA | 57.037 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
1482 | 1544 | 8.367660 | AGTCTTTGTAGAGATTCCACTATGAA | 57.632 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1483 | 1545 | 8.254508 | AGTCTTTGTAGAGATTCCACTATGAAC | 58.745 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
1484 | 1546 | 8.254508 | GTCTTTGTAGAGATTCCACTATGAACT | 58.745 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
1485 | 1547 | 9.475620 | TCTTTGTAGAGATTCCACTATGAACTA | 57.524 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1486 | 1548 | 9.522804 | CTTTGTAGAGATTCCACTATGAACTAC | 57.477 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
1487 | 1549 | 8.589701 | TTGTAGAGATTCCACTATGAACTACA | 57.410 | 34.615 | 0.00 | 0.00 | 33.29 | 2.74 |
1488 | 1550 | 8.768501 | TGTAGAGATTCCACTATGAACTACAT | 57.231 | 34.615 | 0.00 | 0.00 | 42.39 | 2.29 |
1489 | 1551 | 9.862149 | TGTAGAGATTCCACTATGAACTACATA | 57.138 | 33.333 | 0.00 | 0.00 | 40.07 | 2.29 |
1491 | 1553 | 8.768501 | AGAGATTCCACTATGAACTACATACA | 57.231 | 34.615 | 0.00 | 0.00 | 40.07 | 2.29 |
1492 | 1554 | 8.855110 | AGAGATTCCACTATGAACTACATACAG | 58.145 | 37.037 | 0.00 | 0.00 | 40.07 | 2.74 |
1493 | 1555 | 8.768501 | AGATTCCACTATGAACTACATACAGA | 57.231 | 34.615 | 0.00 | 0.00 | 40.07 | 3.41 |
1494 | 1556 | 9.373450 | AGATTCCACTATGAACTACATACAGAT | 57.627 | 33.333 | 0.00 | 0.00 | 40.07 | 2.90 |
1495 | 1557 | 9.416794 | GATTCCACTATGAACTACATACAGATG | 57.583 | 37.037 | 0.00 | 0.00 | 40.07 | 2.90 |
1497 | 1559 | 8.990163 | TCCACTATGAACTACATACAGATGTA | 57.010 | 34.615 | 0.00 | 0.00 | 44.77 | 2.29 |
1498 | 1560 | 9.588096 | TCCACTATGAACTACATACAGATGTAT | 57.412 | 33.333 | 0.00 | 0.00 | 45.42 | 2.29 |
1524 | 1586 | 6.839124 | AGATGCATTTTAAGTGTGGATTCA | 57.161 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1525 | 1587 | 7.414222 | AGATGCATTTTAAGTGTGGATTCAT | 57.586 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1526 | 1588 | 7.844009 | AGATGCATTTTAAGTGTGGATTCATT | 58.156 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
1527 | 1589 | 7.977853 | AGATGCATTTTAAGTGTGGATTCATTC | 59.022 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
1528 | 1590 | 6.990798 | TGCATTTTAAGTGTGGATTCATTCA | 58.009 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1529 | 1591 | 7.613585 | TGCATTTTAAGTGTGGATTCATTCAT | 58.386 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
1530 | 1592 | 8.095792 | TGCATTTTAAGTGTGGATTCATTCATT | 58.904 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1531 | 1593 | 8.938906 | GCATTTTAAGTGTGGATTCATTCATTT | 58.061 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
1534 | 1596 | 7.887996 | TTAAGTGTGGATTCATTCATTTTGC | 57.112 | 32.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1535 | 1597 | 5.733620 | AGTGTGGATTCATTCATTTTGCT | 57.266 | 34.783 | 0.00 | 0.00 | 0.00 | 3.91 |
1536 | 1598 | 5.717119 | AGTGTGGATTCATTCATTTTGCTC | 58.283 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
1537 | 1599 | 4.866486 | GTGTGGATTCATTCATTTTGCTCC | 59.134 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
1538 | 1600 | 4.107622 | GTGGATTCATTCATTTTGCTCCG | 58.892 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
1539 | 1601 | 3.763360 | TGGATTCATTCATTTTGCTCCGT | 59.237 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
1540 | 1602 | 4.946772 | TGGATTCATTCATTTTGCTCCGTA | 59.053 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
1541 | 1603 | 5.593909 | TGGATTCATTCATTTTGCTCCGTAT | 59.406 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1542 | 1604 | 5.916883 | GGATTCATTCATTTTGCTCCGTATG | 59.083 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1543 | 1605 | 5.895636 | TTCATTCATTTTGCTCCGTATGT | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
1544 | 1606 | 6.993786 | TTCATTCATTTTGCTCCGTATGTA | 57.006 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1545 | 1607 | 6.603237 | TCATTCATTTTGCTCCGTATGTAG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
1546 | 1608 | 6.112734 | TCATTCATTTTGCTCCGTATGTAGT | 58.887 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1547 | 1609 | 6.257849 | TCATTCATTTTGCTCCGTATGTAGTC | 59.742 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
1548 | 1610 | 4.439057 | TCATTTTGCTCCGTATGTAGTCC | 58.561 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
1549 | 1611 | 3.965379 | TTTTGCTCCGTATGTAGTCCA | 57.035 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
1550 | 1612 | 2.953466 | TTGCTCCGTATGTAGTCCAC | 57.047 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1551 | 1613 | 1.108776 | TGCTCCGTATGTAGTCCACC | 58.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1552 | 1614 | 1.341679 | TGCTCCGTATGTAGTCCACCT | 60.342 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
1553 | 1615 | 2.092267 | TGCTCCGTATGTAGTCCACCTA | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1554 | 1616 | 2.553172 | GCTCCGTATGTAGTCCACCTAG | 59.447 | 54.545 | 0.00 | 0.00 | 0.00 | 3.02 |
1555 | 1617 | 3.818180 | CTCCGTATGTAGTCCACCTAGT | 58.182 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1556 | 1618 | 3.548770 | TCCGTATGTAGTCCACCTAGTG | 58.451 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1571 | 1633 | 6.531503 | CACCTAGTGGAATCTCTACAAAGA | 57.468 | 41.667 | 0.00 | 0.00 | 37.04 | 2.52 |
1572 | 1634 | 6.334202 | CACCTAGTGGAATCTCTACAAAGAC | 58.666 | 44.000 | 0.00 | 0.00 | 37.04 | 3.01 |
1573 | 1635 | 6.153680 | CACCTAGTGGAATCTCTACAAAGACT | 59.846 | 42.308 | 0.00 | 0.00 | 37.04 | 3.24 |
1574 | 1636 | 6.726764 | ACCTAGTGGAATCTCTACAAAGACTT | 59.273 | 38.462 | 0.00 | 0.00 | 37.04 | 3.01 |
1575 | 1637 | 7.894364 | ACCTAGTGGAATCTCTACAAAGACTTA | 59.106 | 37.037 | 0.00 | 0.00 | 37.04 | 2.24 |
1576 | 1638 | 8.192110 | CCTAGTGGAATCTCTACAAAGACTTAC | 58.808 | 40.741 | 0.00 | 0.00 | 34.57 | 2.34 |
1577 | 1639 | 7.540474 | AGTGGAATCTCTACAAAGACTTACA | 57.460 | 36.000 | 0.00 | 0.00 | 29.47 | 2.41 |
1578 | 1640 | 8.140112 | AGTGGAATCTCTACAAAGACTTACAT | 57.860 | 34.615 | 0.00 | 0.00 | 29.47 | 2.29 |
1579 | 1641 | 8.598041 | AGTGGAATCTCTACAAAGACTTACATT | 58.402 | 33.333 | 0.00 | 0.00 | 29.47 | 2.71 |
1580 | 1642 | 9.220767 | GTGGAATCTCTACAAAGACTTACATTT | 57.779 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1586 | 1648 | 9.924650 | TCTCTACAAAGACTTACATTTAGGAAC | 57.075 | 33.333 | 0.00 | 0.00 | 0.00 | 3.62 |
1587 | 1649 | 8.752766 | TCTACAAAGACTTACATTTAGGAACG | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 3.95 |
1588 | 1650 | 6.796705 | ACAAAGACTTACATTTAGGAACGG | 57.203 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
1589 | 1651 | 6.527423 | ACAAAGACTTACATTTAGGAACGGA | 58.473 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1590 | 1652 | 6.649557 | ACAAAGACTTACATTTAGGAACGGAG | 59.350 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
1591 | 1653 | 5.340439 | AGACTTACATTTAGGAACGGAGG | 57.660 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1592 | 1654 | 4.161754 | AGACTTACATTTAGGAACGGAGGG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1593 | 1655 | 4.098894 | ACTTACATTTAGGAACGGAGGGA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1594 | 1656 | 4.161754 | ACTTACATTTAGGAACGGAGGGAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1595 | 1657 | 2.547990 | ACATTTAGGAACGGAGGGAGT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
1596 | 1658 | 3.716431 | ACATTTAGGAACGGAGGGAGTA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
1597 | 1659 | 3.450096 | ACATTTAGGAACGGAGGGAGTAC | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
1598 | 1660 | 2.905415 | TTAGGAACGGAGGGAGTACA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1599 | 1661 | 2.905415 | TAGGAACGGAGGGAGTACAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1600 | 1662 | 2.249309 | AGGAACGGAGGGAGTACAAT | 57.751 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1601 | 1663 | 2.547990 | AGGAACGGAGGGAGTACAATT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
1602 | 1664 | 2.910977 | AGGAACGGAGGGAGTACAATTT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
1603 | 1665 | 4.098894 | AGGAACGGAGGGAGTACAATTTA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
1604 | 1666 | 4.161754 | AGGAACGGAGGGAGTACAATTTAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
1605 | 1667 | 4.161001 | GGAACGGAGGGAGTACAATTTAGA | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
1606 | 1668 | 4.732672 | ACGGAGGGAGTACAATTTAGAC | 57.267 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
1610 | 1672 | 5.359009 | CGGAGGGAGTACAATTTAGACTGTA | 59.641 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1654 | 1716 | 7.168972 | TGCTAATTGATTGTTTTTCCTGAAACG | 59.831 | 33.333 | 0.00 | 0.00 | 41.32 | 3.60 |
1740 | 1803 | 3.691118 | TCAGCTGTGCCATATTCTTTGAC | 59.309 | 43.478 | 14.67 | 0.00 | 0.00 | 3.18 |
1747 | 1810 | 3.126858 | TGCCATATTCTTTGACAGCGTTC | 59.873 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
1752 | 1815 | 0.468226 | TCTTTGACAGCGTTCCCACT | 59.532 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1817 | 1881 | 2.620585 | GCCCTTTTATCTCTGCCATCAC | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1902 | 4481 | 2.359900 | AGCATTTCGGAACTGTGATCC | 58.640 | 47.619 | 9.44 | 0.00 | 0.00 | 3.36 |
1922 | 4501 | 3.007506 | TCCTACGGTTGAATCAGCTTTCA | 59.992 | 43.478 | 0.00 | 0.00 | 33.89 | 2.69 |
1937 | 4516 | 7.288810 | TCAGCTTTCAATGTCCTAAAATTGT | 57.711 | 32.000 | 0.00 | 0.00 | 35.66 | 2.71 |
1957 | 4536 | 9.927668 | AAATTGTCAACTCCATTTGGTTATTAG | 57.072 | 29.630 | 0.00 | 0.00 | 36.34 | 1.73 |
1980 | 4559 | 3.057734 | GTCGGAACCTGTTAACTCTGTG | 58.942 | 50.000 | 7.22 | 0.00 | 0.00 | 3.66 |
2213 | 4793 | 6.483640 | AGTTGTTTCGAGAAAAATCTGCTAGT | 59.516 | 34.615 | 0.00 | 0.00 | 31.33 | 2.57 |
2262 | 4843 | 3.925913 | GCACACTTGTTTGCTGAGAAAAA | 59.074 | 39.130 | 4.83 | 0.00 | 35.74 | 1.94 |
2264 | 4845 | 4.563976 | CACACTTGTTTGCTGAGAAAAAGG | 59.436 | 41.667 | 0.00 | 0.00 | 0.00 | 3.11 |
2318 | 4899 | 6.722590 | TGCCATAATTAATCATCTCAATGCCT | 59.277 | 34.615 | 0.00 | 0.00 | 32.58 | 4.75 |
2443 | 5024 | 7.384932 | CCATTTTGAAGGTTTAGCCACTTAAAG | 59.615 | 37.037 | 0.00 | 0.00 | 40.61 | 1.85 |
2481 | 5062 | 7.170998 | ACTCCTTTATAGTTTTGTGACACTTCG | 59.829 | 37.037 | 7.20 | 0.00 | 0.00 | 3.79 |
2578 | 5159 | 5.858381 | ACACTTCATTCTCTATGTGTGTGT | 58.142 | 37.500 | 13.67 | 0.00 | 43.70 | 3.72 |
2668 | 5250 | 5.637006 | TCTTCGTGGTTAATTCATTTGGG | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 4.12 |
2698 | 5280 | 7.407337 | GGTTTCAGGTGATTAATTAGTTAGCG | 58.593 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
2745 | 5327 | 7.176690 | ACTGAACTACCATATTTGGAAACCTTG | 59.823 | 37.037 | 9.40 | 0.00 | 46.92 | 3.61 |
2935 | 5517 | 5.420739 | TGGTAATGTAATTTTTCCCTGAGCC | 59.579 | 40.000 | 0.00 | 0.00 | 37.87 | 4.70 |
2940 | 5522 | 2.115343 | ATTTTTCCCTGAGCCGAGTC | 57.885 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2957 | 5539 | 6.375455 | AGCCGAGTCTTTTGATCAAATTATGT | 59.625 | 34.615 | 21.10 | 6.07 | 0.00 | 2.29 |
3024 | 5606 | 4.456911 | AGTGCACTGTCCACTTTATGATTG | 59.543 | 41.667 | 20.97 | 0.00 | 40.45 | 2.67 |
3029 | 5611 | 2.652348 | TGTCCACTTTATGATTGGGGGT | 59.348 | 45.455 | 0.00 | 0.00 | 0.00 | 4.95 |
3217 | 5800 | 8.053355 | ACCTGCTTACCTTTATTGCTAATTAGT | 58.947 | 33.333 | 13.91 | 0.00 | 0.00 | 2.24 |
3418 | 6001 | 8.573035 | TCTATTTGTGTTCATTTTTGGTCTACC | 58.427 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3621 | 6204 | 5.073144 | TCTGTATAACCTTCCCCAATCATCC | 59.927 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3853 | 6437 | 6.856895 | AGAAGCTAGATTTGGTAATTTGTGC | 58.143 | 36.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3864 | 6448 | 6.154203 | TGGTAATTTGTGCACTCATTTTCA | 57.846 | 33.333 | 19.41 | 13.18 | 0.00 | 2.69 |
3866 | 6450 | 6.183360 | TGGTAATTTGTGCACTCATTTTCACT | 60.183 | 34.615 | 19.41 | 0.00 | 0.00 | 3.41 |
3911 | 6495 | 5.395990 | CCCATCCTAAAGAGCATTGCAAAAT | 60.396 | 40.000 | 11.91 | 0.00 | 0.00 | 1.82 |
3936 | 6520 | 8.263940 | TCTGCAAGTCATGGTATAAAACTTAC | 57.736 | 34.615 | 0.00 | 0.00 | 33.76 | 2.34 |
3937 | 6521 | 7.335924 | TCTGCAAGTCATGGTATAAAACTTACC | 59.664 | 37.037 | 0.00 | 0.00 | 36.36 | 2.85 |
3963 | 6547 | 3.002656 | CCATGCCAAATAGCTGTCTAACG | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
3969 | 6553 | 4.876107 | CCAAATAGCTGTCTAACGGTGAAT | 59.124 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3983 | 6567 | 8.124199 | TCTAACGGTGAATTGTTTTTCAGTTAC | 58.876 | 33.333 | 0.00 | 0.00 | 36.34 | 2.50 |
3988 | 6572 | 6.970613 | GGTGAATTGTTTTTCAGTTACGTCTT | 59.029 | 34.615 | 0.00 | 0.00 | 36.34 | 3.01 |
4026 | 6610 | 2.526077 | CTGTGCTTACTGCGATTACGA | 58.474 | 47.619 | 0.00 | 0.00 | 46.63 | 3.43 |
4067 | 6651 | 3.093057 | AGAGCGTCTCCAACAGTAGATT | 58.907 | 45.455 | 3.66 | 0.00 | 0.00 | 2.40 |
4072 | 6656 | 5.185249 | AGCGTCTCCAACAGTAGATTAGAAA | 59.815 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4075 | 6659 | 6.866770 | CGTCTCCAACAGTAGATTAGAAAACA | 59.133 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
4080 | 6664 | 6.204688 | CCAACAGTAGATTAGAAAACACAGCA | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 4.41 |
4200 | 6792 | 1.930503 | CTGACCAAAAACCAAAACCGC | 59.069 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
4223 | 6815 | 4.452733 | CAGGAACTCCGACCGCCC | 62.453 | 72.222 | 0.00 | 0.00 | 42.08 | 6.13 |
4350 | 6942 | 1.142097 | GAAGCTGGGCGTCTCCTAC | 59.858 | 63.158 | 0.00 | 0.00 | 34.45 | 3.18 |
4416 | 7008 | 3.626924 | AGCGGGCACCTCTTTCGT | 61.627 | 61.111 | 0.00 | 0.00 | 43.53 | 3.85 |
4422 | 7014 | 1.079503 | GGCACCTCTTTCGTGATGTC | 58.920 | 55.000 | 0.00 | 0.00 | 32.77 | 3.06 |
4428 | 7020 | 2.159170 | CCTCTTTCGTGATGTCCTCTCC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 3.71 |
4433 | 7025 | 0.378962 | CGTGATGTCCTCTCCGTCTC | 59.621 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4466 | 7058 | 0.103937 | CTGGAATGTCGAGAGGCTCC | 59.896 | 60.000 | 11.71 | 1.69 | 36.07 | 4.70 |
4499 | 7091 | 1.146358 | GCGCTAGATTCCCACGTCAC | 61.146 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4502 | 7094 | 0.527817 | CTAGATTCCCACGTCACGGC | 60.528 | 60.000 | 0.35 | 0.00 | 0.00 | 5.68 |
4503 | 7095 | 2.274232 | TAGATTCCCACGTCACGGCG | 62.274 | 60.000 | 4.80 | 4.80 | 37.94 | 6.46 |
4504 | 7096 | 3.636313 | GATTCCCACGTCACGGCGA | 62.636 | 63.158 | 16.62 | 0.00 | 35.59 | 5.54 |
4505 | 7097 | 3.927163 | ATTCCCACGTCACGGCGAC | 62.927 | 63.158 | 16.62 | 0.00 | 41.62 | 5.19 |
4529 | 7121 | 2.032987 | ACGTAGTTTTGGGGGCGG | 59.967 | 61.111 | 0.00 | 0.00 | 37.78 | 6.13 |
4530 | 7122 | 2.748647 | CGTAGTTTTGGGGGCGGG | 60.749 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
4531 | 7123 | 2.361992 | GTAGTTTTGGGGGCGGGG | 60.362 | 66.667 | 0.00 | 0.00 | 0.00 | 5.73 |
4532 | 7124 | 2.532199 | TAGTTTTGGGGGCGGGGA | 60.532 | 61.111 | 0.00 | 0.00 | 0.00 | 4.81 |
4533 | 7125 | 1.931705 | TAGTTTTGGGGGCGGGGAT | 60.932 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
4534 | 7126 | 2.218115 | TAGTTTTGGGGGCGGGGATG | 62.218 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4535 | 7127 | 3.595758 | TTTTGGGGGCGGGGATGT | 61.596 | 61.111 | 0.00 | 0.00 | 0.00 | 3.06 |
4536 | 7128 | 3.895820 | TTTTGGGGGCGGGGATGTG | 62.896 | 63.158 | 0.00 | 0.00 | 0.00 | 3.21 |
4544 | 7136 | 4.175337 | CGGGGATGTGGCGACCAT | 62.175 | 66.667 | 0.00 | 0.00 | 35.28 | 3.55 |
4545 | 7137 | 2.516930 | GGGGATGTGGCGACCATG | 60.517 | 66.667 | 0.00 | 0.00 | 35.28 | 3.66 |
4546 | 7138 | 2.589540 | GGGATGTGGCGACCATGA | 59.410 | 61.111 | 0.00 | 0.00 | 35.28 | 3.07 |
4547 | 7139 | 1.149174 | GGGATGTGGCGACCATGAT | 59.851 | 57.895 | 0.00 | 0.00 | 35.28 | 2.45 |
4548 | 7140 | 0.886490 | GGGATGTGGCGACCATGATC | 60.886 | 60.000 | 0.00 | 6.96 | 35.28 | 2.92 |
4549 | 7141 | 0.107456 | GGATGTGGCGACCATGATCT | 59.893 | 55.000 | 0.00 | 0.00 | 35.28 | 2.75 |
4550 | 7142 | 1.475751 | GGATGTGGCGACCATGATCTT | 60.476 | 52.381 | 0.00 | 0.00 | 35.28 | 2.40 |
4551 | 7143 | 1.869767 | GATGTGGCGACCATGATCTTC | 59.130 | 52.381 | 0.00 | 0.00 | 35.28 | 2.87 |
4552 | 7144 | 0.107703 | TGTGGCGACCATGATCTTCC | 60.108 | 55.000 | 0.00 | 0.00 | 35.28 | 3.46 |
4553 | 7145 | 0.107703 | GTGGCGACCATGATCTTCCA | 60.108 | 55.000 | 0.00 | 0.00 | 35.28 | 3.53 |
4554 | 7146 | 0.107703 | TGGCGACCATGATCTTCCAC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4555 | 7147 | 0.815615 | GGCGACCATGATCTTCCACC | 60.816 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
4556 | 7148 | 0.179000 | GCGACCATGATCTTCCACCT | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4557 | 7149 | 1.808133 | GCGACCATGATCTTCCACCTC | 60.808 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
4558 | 7150 | 1.482182 | CGACCATGATCTTCCACCTCA | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
4559 | 7151 | 2.093500 | CGACCATGATCTTCCACCTCAA | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4560 | 7152 | 3.274288 | GACCATGATCTTCCACCTCAAC | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4561 | 7153 | 2.025887 | ACCATGATCTTCCACCTCAACC | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4562 | 7154 | 2.648059 | CATGATCTTCCACCTCAACCC | 58.352 | 52.381 | 0.00 | 0.00 | 0.00 | 4.11 |
4563 | 7155 | 1.741028 | TGATCTTCCACCTCAACCCA | 58.259 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
4564 | 7156 | 1.630369 | TGATCTTCCACCTCAACCCAG | 59.370 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
4565 | 7157 | 0.995024 | ATCTTCCACCTCAACCCAGG | 59.005 | 55.000 | 0.00 | 0.00 | 39.80 | 4.45 |
4567 | 7159 | 0.036875 | CTTCCACCTCAACCCAGGTC | 59.963 | 60.000 | 0.00 | 0.00 | 44.08 | 3.85 |
4568 | 7160 | 0.401395 | TTCCACCTCAACCCAGGTCT | 60.401 | 55.000 | 0.00 | 0.00 | 44.08 | 3.85 |
4569 | 7161 | 0.401395 | TCCACCTCAACCCAGGTCTT | 60.401 | 55.000 | 0.00 | 0.00 | 44.08 | 3.01 |
4570 | 7162 | 0.036875 | CCACCTCAACCCAGGTCTTC | 59.963 | 60.000 | 0.00 | 0.00 | 44.08 | 2.87 |
4571 | 7163 | 0.320771 | CACCTCAACCCAGGTCTTCG | 60.321 | 60.000 | 0.00 | 0.00 | 44.08 | 3.79 |
4572 | 7164 | 1.296715 | CCTCAACCCAGGTCTTCGG | 59.703 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
4574 | 7166 | 1.152204 | TCAACCCAGGTCTTCGGGA | 60.152 | 57.895 | 0.45 | 0.00 | 46.34 | 5.14 |
4575 | 7167 | 1.192146 | TCAACCCAGGTCTTCGGGAG | 61.192 | 60.000 | 0.45 | 0.00 | 46.34 | 4.30 |
4576 | 7168 | 2.593956 | AACCCAGGTCTTCGGGAGC | 61.594 | 63.158 | 0.45 | 1.38 | 46.34 | 4.70 |
4577 | 7169 | 4.148825 | CCCAGGTCTTCGGGAGCG | 62.149 | 72.222 | 0.00 | 0.00 | 46.34 | 5.03 |
4578 | 7170 | 3.068691 | CCAGGTCTTCGGGAGCGA | 61.069 | 66.667 | 0.00 | 0.00 | 46.05 | 4.93 |
4579 | 7171 | 2.427245 | CCAGGTCTTCGGGAGCGAT | 61.427 | 63.158 | 0.00 | 0.00 | 46.05 | 4.58 |
4580 | 7172 | 1.517832 | CAGGTCTTCGGGAGCGATT | 59.482 | 57.895 | 0.00 | 0.00 | 46.05 | 3.34 |
4581 | 7173 | 0.807667 | CAGGTCTTCGGGAGCGATTG | 60.808 | 60.000 | 0.00 | 0.00 | 46.05 | 2.67 |
4582 | 7174 | 1.521681 | GGTCTTCGGGAGCGATTGG | 60.522 | 63.158 | 0.00 | 0.00 | 32.59 | 3.16 |
4583 | 7175 | 2.174319 | GTCTTCGGGAGCGATTGGC | 61.174 | 63.158 | 0.00 | 0.00 | 44.05 | 4.52 |
4593 | 7185 | 3.932459 | GCGATTGGCTGAAGATTGG | 57.068 | 52.632 | 0.00 | 0.00 | 39.11 | 3.16 |
4594 | 7186 | 1.382522 | GCGATTGGCTGAAGATTGGA | 58.617 | 50.000 | 0.00 | 0.00 | 39.11 | 3.53 |
4595 | 7187 | 1.332997 | GCGATTGGCTGAAGATTGGAG | 59.667 | 52.381 | 0.00 | 0.00 | 39.11 | 3.86 |
4596 | 7188 | 2.636830 | CGATTGGCTGAAGATTGGAGT | 58.363 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
4597 | 7189 | 3.012518 | CGATTGGCTGAAGATTGGAGTT | 58.987 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
4598 | 7190 | 3.064545 | CGATTGGCTGAAGATTGGAGTTC | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
4599 | 7191 | 2.496899 | TGGCTGAAGATTGGAGTTCC | 57.503 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
4600 | 7192 | 1.704628 | TGGCTGAAGATTGGAGTTCCA | 59.295 | 47.619 | 0.00 | 0.00 | 45.94 | 3.53 |
4601 | 7193 | 2.309755 | TGGCTGAAGATTGGAGTTCCAT | 59.690 | 45.455 | 0.93 | 0.00 | 46.97 | 3.41 |
4602 | 7194 | 3.245371 | TGGCTGAAGATTGGAGTTCCATT | 60.245 | 43.478 | 0.93 | 0.00 | 46.97 | 3.16 |
4603 | 7195 | 3.379688 | GGCTGAAGATTGGAGTTCCATTC | 59.620 | 47.826 | 12.85 | 12.85 | 46.97 | 2.67 |
4604 | 7196 | 3.379688 | GCTGAAGATTGGAGTTCCATTCC | 59.620 | 47.826 | 15.78 | 6.11 | 46.97 | 3.01 |
4605 | 7197 | 3.950395 | CTGAAGATTGGAGTTCCATTCCC | 59.050 | 47.826 | 15.78 | 10.67 | 46.97 | 3.97 |
4606 | 7198 | 2.717639 | AGATTGGAGTTCCATTCCCG | 57.282 | 50.000 | 15.78 | 0.00 | 46.97 | 5.14 |
4607 | 7199 | 1.025041 | GATTGGAGTTCCATTCCCGC | 58.975 | 55.000 | 0.93 | 0.00 | 46.97 | 6.13 |
4608 | 7200 | 0.625849 | ATTGGAGTTCCATTCCCGCT | 59.374 | 50.000 | 0.93 | 0.00 | 46.97 | 5.52 |
4609 | 7201 | 0.035439 | TTGGAGTTCCATTCCCGCTC | 60.035 | 55.000 | 0.93 | 0.00 | 46.97 | 5.03 |
4610 | 7202 | 0.909610 | TGGAGTTCCATTCCCGCTCT | 60.910 | 55.000 | 0.00 | 0.00 | 42.01 | 4.09 |
4611 | 7203 | 0.462759 | GGAGTTCCATTCCCGCTCTG | 60.463 | 60.000 | 0.00 | 0.00 | 35.64 | 3.35 |
4612 | 7204 | 1.078143 | AGTTCCATTCCCGCTCTGC | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
4635 | 7227 | 4.697756 | GTGTGGGCTGGCAGCGTA | 62.698 | 66.667 | 31.22 | 20.35 | 43.62 | 4.42 |
4636 | 7228 | 4.697756 | TGTGGGCTGGCAGCGTAC | 62.698 | 66.667 | 31.22 | 29.06 | 43.62 | 3.67 |
4637 | 7229 | 4.394712 | GTGGGCTGGCAGCGTACT | 62.395 | 66.667 | 31.22 | 0.00 | 43.62 | 2.73 |
4638 | 7230 | 4.393155 | TGGGCTGGCAGCGTACTG | 62.393 | 66.667 | 31.22 | 0.00 | 43.62 | 2.74 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 1.306642 | CGAGCCCGTCACTACAGAGT | 61.307 | 60.000 | 0.00 | 0.00 | 35.80 | 3.24 |
48 | 49 | 2.529136 | CCAGTGGTCCAGTCCCCA | 60.529 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
87 | 90 | 1.842010 | GAGGATTCCCCCTACCCCG | 60.842 | 68.421 | 0.00 | 0.00 | 36.49 | 5.73 |
247 | 252 | 0.461961 | TCCCCAAACTTTTTGTGCCG | 59.538 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
253 | 258 | 5.506730 | TTCCTTTTGTCCCCAAACTTTTT | 57.493 | 34.783 | 0.00 | 0.00 | 40.19 | 1.94 |
476 | 482 | 9.533831 | ACTACCACTTGATAAAAATCAAATCCT | 57.466 | 29.630 | 2.74 | 0.00 | 39.73 | 3.24 |
522 | 528 | 1.858910 | TCCCCCTAATGATGCCATGTT | 59.141 | 47.619 | 0.00 | 0.00 | 32.36 | 2.71 |
550 | 556 | 7.218228 | TGTAACACCTCAAGTCGTTATCTAA | 57.782 | 36.000 | 0.00 | 0.00 | 30.22 | 2.10 |
638 | 644 | 3.117888 | ACTTGTGGTGAGGTTGACTGAAT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
648 | 654 | 3.634397 | ATGTATGGACTTGTGGTGAGG | 57.366 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
680 | 687 | 5.021458 | TCTCCCCGTCAATAAGACTTACTT | 58.979 | 41.667 | 0.00 | 0.00 | 45.32 | 2.24 |
734 | 769 | 0.617820 | TCTTTCCCCTCCCTCTTCCG | 60.618 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
780 | 819 | 3.486383 | ACACCTTTGGACATTGACGATT | 58.514 | 40.909 | 0.00 | 0.00 | 0.00 | 3.34 |
793 | 832 | 4.693566 | TCGGATTTTGCTAGTACACCTTTG | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
796 | 835 | 3.259876 | TGTCGGATTTTGCTAGTACACCT | 59.740 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
838 | 888 | 0.320073 | CCTTGGCGTGAAAGTACGGA | 60.320 | 55.000 | 0.00 | 0.00 | 43.87 | 4.69 |
1151 | 1208 | 3.726517 | CACCTCGGCCGCACAAAG | 61.727 | 66.667 | 23.51 | 12.55 | 0.00 | 2.77 |
1162 | 1219 | 1.901650 | GCCTTTCGTCTTGCACCTCG | 61.902 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1169 | 1226 | 2.174349 | GCTGCGCCTTTCGTCTTG | 59.826 | 61.111 | 4.18 | 0.00 | 41.07 | 3.02 |
1170 | 1227 | 2.280797 | TGCTGCGCCTTTCGTCTT | 60.281 | 55.556 | 4.18 | 0.00 | 41.07 | 3.01 |
1171 | 1228 | 2.740055 | CTGCTGCGCCTTTCGTCT | 60.740 | 61.111 | 4.18 | 0.00 | 41.07 | 4.18 |
1179 | 1236 | 2.356194 | CCCAAAAACTGCTGCGCC | 60.356 | 61.111 | 4.18 | 0.00 | 0.00 | 6.53 |
1211 | 1273 | 1.044725 | GCAACGTTCAAATCGCACAG | 58.955 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1420 | 1482 | 5.362717 | CGGAGGGAGTATATATATGCACCAA | 59.637 | 44.000 | 22.28 | 0.00 | 32.39 | 3.67 |
1437 | 1499 | 6.379579 | AGACTTATATTTAGGAACGGAGGGA | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1438 | 1500 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1439 | 1501 | 7.985752 | ACAAAGACTTATATTTAGGAACGGAGG | 59.014 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1440 | 1502 | 8.943909 | ACAAAGACTTATATTTAGGAACGGAG | 57.056 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
1455 | 1517 | 9.475620 | TCATAGTGGAATCTCTACAAAGACTTA | 57.524 | 33.333 | 0.00 | 0.00 | 29.47 | 2.24 |
1456 | 1518 | 8.367660 | TCATAGTGGAATCTCTACAAAGACTT | 57.632 | 34.615 | 0.00 | 0.00 | 29.47 | 3.01 |
1457 | 1519 | 7.962995 | TCATAGTGGAATCTCTACAAAGACT | 57.037 | 36.000 | 0.00 | 0.00 | 29.47 | 3.24 |
1458 | 1520 | 8.254508 | AGTTCATAGTGGAATCTCTACAAAGAC | 58.745 | 37.037 | 0.00 | 0.00 | 29.47 | 3.01 |
1459 | 1521 | 8.367660 | AGTTCATAGTGGAATCTCTACAAAGA | 57.632 | 34.615 | 0.00 | 0.00 | 29.47 | 2.52 |
1460 | 1522 | 9.522804 | GTAGTTCATAGTGGAATCTCTACAAAG | 57.477 | 37.037 | 0.00 | 0.00 | 30.38 | 2.77 |
1461 | 1523 | 9.031537 | TGTAGTTCATAGTGGAATCTCTACAAA | 57.968 | 33.333 | 0.00 | 0.00 | 34.07 | 2.83 |
1462 | 1524 | 8.589701 | TGTAGTTCATAGTGGAATCTCTACAA | 57.410 | 34.615 | 0.00 | 0.00 | 34.07 | 2.41 |
1463 | 1525 | 8.768501 | ATGTAGTTCATAGTGGAATCTCTACA | 57.231 | 34.615 | 0.00 | 0.00 | 37.82 | 2.74 |
1465 | 1527 | 9.862149 | TGTATGTAGTTCATAGTGGAATCTCTA | 57.138 | 33.333 | 0.00 | 0.00 | 39.36 | 2.43 |
1466 | 1528 | 8.768501 | TGTATGTAGTTCATAGTGGAATCTCT | 57.231 | 34.615 | 0.00 | 0.00 | 39.36 | 3.10 |
1467 | 1529 | 8.851145 | TCTGTATGTAGTTCATAGTGGAATCTC | 58.149 | 37.037 | 0.00 | 0.00 | 39.36 | 2.75 |
1468 | 1530 | 8.768501 | TCTGTATGTAGTTCATAGTGGAATCT | 57.231 | 34.615 | 0.00 | 0.00 | 39.36 | 2.40 |
1469 | 1531 | 9.416794 | CATCTGTATGTAGTTCATAGTGGAATC | 57.583 | 37.037 | 0.00 | 0.00 | 39.36 | 2.52 |
1470 | 1532 | 8.928448 | ACATCTGTATGTAGTTCATAGTGGAAT | 58.072 | 33.333 | 0.00 | 0.00 | 44.66 | 3.01 |
1471 | 1533 | 8.306313 | ACATCTGTATGTAGTTCATAGTGGAA | 57.694 | 34.615 | 0.00 | 0.00 | 44.66 | 3.53 |
1472 | 1534 | 7.898014 | ACATCTGTATGTAGTTCATAGTGGA | 57.102 | 36.000 | 0.00 | 0.00 | 44.66 | 4.02 |
1498 | 1560 | 9.625747 | TGAATCCACACTTAAAATGCATCTATA | 57.374 | 29.630 | 0.00 | 0.00 | 0.00 | 1.31 |
1499 | 1561 | 8.523915 | TGAATCCACACTTAAAATGCATCTAT | 57.476 | 30.769 | 0.00 | 0.00 | 0.00 | 1.98 |
1500 | 1562 | 7.936496 | TGAATCCACACTTAAAATGCATCTA | 57.064 | 32.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1501 | 1563 | 6.839124 | TGAATCCACACTTAAAATGCATCT | 57.161 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
1502 | 1564 | 7.760794 | TGAATGAATCCACACTTAAAATGCATC | 59.239 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
1503 | 1565 | 7.613585 | TGAATGAATCCACACTTAAAATGCAT | 58.386 | 30.769 | 0.00 | 0.00 | 0.00 | 3.96 |
1504 | 1566 | 6.990798 | TGAATGAATCCACACTTAAAATGCA | 58.009 | 32.000 | 0.00 | 0.00 | 0.00 | 3.96 |
1505 | 1567 | 8.483307 | AATGAATGAATCCACACTTAAAATGC | 57.517 | 30.769 | 0.00 | 0.00 | 0.00 | 3.56 |
1508 | 1570 | 8.772705 | GCAAAATGAATGAATCCACACTTAAAA | 58.227 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
1509 | 1571 | 8.149647 | AGCAAAATGAATGAATCCACACTTAAA | 58.850 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
1510 | 1572 | 7.669427 | AGCAAAATGAATGAATCCACACTTAA | 58.331 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
1511 | 1573 | 7.230849 | AGCAAAATGAATGAATCCACACTTA | 57.769 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1512 | 1574 | 6.105397 | AGCAAAATGAATGAATCCACACTT | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1513 | 1575 | 5.337009 | GGAGCAAAATGAATGAATCCACACT | 60.337 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1514 | 1576 | 4.866486 | GGAGCAAAATGAATGAATCCACAC | 59.134 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
1515 | 1577 | 4.380761 | CGGAGCAAAATGAATGAATCCACA | 60.381 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
1516 | 1578 | 4.107622 | CGGAGCAAAATGAATGAATCCAC | 58.892 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
1517 | 1579 | 3.763360 | ACGGAGCAAAATGAATGAATCCA | 59.237 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1518 | 1580 | 4.376340 | ACGGAGCAAAATGAATGAATCC | 57.624 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
1519 | 1581 | 6.498304 | ACATACGGAGCAAAATGAATGAATC | 58.502 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1520 | 1582 | 6.455360 | ACATACGGAGCAAAATGAATGAAT | 57.545 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1521 | 1583 | 5.895636 | ACATACGGAGCAAAATGAATGAA | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
1522 | 1584 | 6.112734 | ACTACATACGGAGCAAAATGAATGA | 58.887 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1523 | 1585 | 6.363577 | ACTACATACGGAGCAAAATGAATG | 57.636 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
1524 | 1586 | 5.527582 | GGACTACATACGGAGCAAAATGAAT | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1525 | 1587 | 4.873827 | GGACTACATACGGAGCAAAATGAA | 59.126 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1526 | 1588 | 4.081365 | TGGACTACATACGGAGCAAAATGA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1527 | 1589 | 4.034048 | GTGGACTACATACGGAGCAAAATG | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 2.32 |
1528 | 1590 | 4.189231 | GTGGACTACATACGGAGCAAAAT | 58.811 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
1529 | 1591 | 3.592059 | GTGGACTACATACGGAGCAAAA | 58.408 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
1530 | 1592 | 2.093869 | GGTGGACTACATACGGAGCAAA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1531 | 1593 | 1.479323 | GGTGGACTACATACGGAGCAA | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
1532 | 1594 | 1.108776 | GGTGGACTACATACGGAGCA | 58.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1533 | 1595 | 1.400737 | AGGTGGACTACATACGGAGC | 58.599 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1534 | 1596 | 3.564644 | CACTAGGTGGACTACATACGGAG | 59.435 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
1535 | 1597 | 3.548770 | CACTAGGTGGACTACATACGGA | 58.451 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1536 | 1598 | 3.984508 | CACTAGGTGGACTACATACGG | 57.015 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
1548 | 1610 | 6.153680 | AGTCTTTGTAGAGATTCCACTAGGTG | 59.846 | 42.308 | 0.00 | 0.00 | 35.89 | 4.00 |
1549 | 1611 | 6.257586 | AGTCTTTGTAGAGATTCCACTAGGT | 58.742 | 40.000 | 0.00 | 0.00 | 35.89 | 3.08 |
1550 | 1612 | 6.783708 | AGTCTTTGTAGAGATTCCACTAGG | 57.216 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1551 | 1613 | 8.740906 | TGTAAGTCTTTGTAGAGATTCCACTAG | 58.259 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1552 | 1614 | 8.645814 | TGTAAGTCTTTGTAGAGATTCCACTA | 57.354 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1553 | 1615 | 7.540474 | TGTAAGTCTTTGTAGAGATTCCACT | 57.460 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1554 | 1616 | 8.779354 | AATGTAAGTCTTTGTAGAGATTCCAC | 57.221 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
1560 | 1622 | 9.924650 | GTTCCTAAATGTAAGTCTTTGTAGAGA | 57.075 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
1561 | 1623 | 8.861101 | CGTTCCTAAATGTAAGTCTTTGTAGAG | 58.139 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
1562 | 1624 | 7.816031 | CCGTTCCTAAATGTAAGTCTTTGTAGA | 59.184 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1563 | 1625 | 7.816031 | TCCGTTCCTAAATGTAAGTCTTTGTAG | 59.184 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1564 | 1626 | 7.669427 | TCCGTTCCTAAATGTAAGTCTTTGTA | 58.331 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
1565 | 1627 | 6.527423 | TCCGTTCCTAAATGTAAGTCTTTGT | 58.473 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1566 | 1628 | 6.092259 | CCTCCGTTCCTAAATGTAAGTCTTTG | 59.908 | 42.308 | 0.00 | 0.00 | 0.00 | 2.77 |
1567 | 1629 | 6.171213 | CCTCCGTTCCTAAATGTAAGTCTTT | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1568 | 1630 | 5.338137 | CCCTCCGTTCCTAAATGTAAGTCTT | 60.338 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1569 | 1631 | 4.161754 | CCCTCCGTTCCTAAATGTAAGTCT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
1570 | 1632 | 4.161001 | TCCCTCCGTTCCTAAATGTAAGTC | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
1571 | 1633 | 4.098894 | TCCCTCCGTTCCTAAATGTAAGT | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1572 | 1634 | 4.161754 | ACTCCCTCCGTTCCTAAATGTAAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
1573 | 1635 | 4.098894 | ACTCCCTCCGTTCCTAAATGTAA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
1574 | 1636 | 3.716431 | ACTCCCTCCGTTCCTAAATGTA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
1575 | 1637 | 2.547990 | ACTCCCTCCGTTCCTAAATGT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
1576 | 1638 | 3.449737 | TGTACTCCCTCCGTTCCTAAATG | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
1577 | 1639 | 3.716431 | TGTACTCCCTCCGTTCCTAAAT | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
1578 | 1640 | 3.173953 | TGTACTCCCTCCGTTCCTAAA | 57.826 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
1579 | 1641 | 2.905415 | TGTACTCCCTCCGTTCCTAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1580 | 1642 | 2.905415 | TTGTACTCCCTCCGTTCCTA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
1581 | 1643 | 2.249309 | ATTGTACTCCCTCCGTTCCT | 57.751 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1582 | 1644 | 3.345508 | AAATTGTACTCCCTCCGTTCC | 57.654 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
1583 | 1645 | 5.105432 | AGTCTAAATTGTACTCCCTCCGTTC | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1584 | 1646 | 4.776308 | AGTCTAAATTGTACTCCCTCCGTT | 59.224 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
1585 | 1647 | 4.159879 | CAGTCTAAATTGTACTCCCTCCGT | 59.840 | 45.833 | 0.00 | 0.00 | 0.00 | 4.69 |
1586 | 1648 | 4.159879 | ACAGTCTAAATTGTACTCCCTCCG | 59.840 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
1587 | 1649 | 5.678955 | ACAGTCTAAATTGTACTCCCTCC | 57.321 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1588 | 1650 | 9.315525 | GAAATACAGTCTAAATTGTACTCCCTC | 57.684 | 37.037 | 0.00 | 0.00 | 31.29 | 4.30 |
1589 | 1651 | 9.047947 | AGAAATACAGTCTAAATTGTACTCCCT | 57.952 | 33.333 | 0.00 | 0.00 | 31.29 | 4.20 |
1590 | 1652 | 9.668497 | AAGAAATACAGTCTAAATTGTACTCCC | 57.332 | 33.333 | 0.00 | 0.00 | 31.29 | 4.30 |
1647 | 1709 | 2.015736 | AGCATAGCTGGACGTTTCAG | 57.984 | 50.000 | 13.39 | 13.39 | 37.57 | 3.02 |
1747 | 1810 | 4.891756 | AGAATGATGCAGGAAATAAGTGGG | 59.108 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1752 | 1815 | 7.795047 | TGTCTAGAGAATGATGCAGGAAATAA | 58.205 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1847 | 1911 | 9.657121 | GCACTATTTATAAGAGCAAAGAATCAC | 57.343 | 33.333 | 0.00 | 0.00 | 31.75 | 3.06 |
1876 | 4455 | 5.543714 | TCACAGTTCCGAAATGCTTTAGTA | 58.456 | 37.500 | 8.45 | 0.00 | 0.00 | 1.82 |
1922 | 4501 | 7.781324 | ATGGAGTTGACAATTTTAGGACATT | 57.219 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1937 | 4516 | 6.370442 | CGACACTAATAACCAAATGGAGTTGA | 59.630 | 38.462 | 6.42 | 0.00 | 38.94 | 3.18 |
1957 | 4536 | 3.057734 | CAGAGTTAACAGGTTCCGACAC | 58.942 | 50.000 | 8.61 | 0.00 | 0.00 | 3.67 |
1980 | 4559 | 8.940952 | AGAAGACTATTATTTTGACAACAGAGC | 58.059 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
2213 | 4793 | 7.438564 | TGCCTACGAAATAGATAAGTGCATAA | 58.561 | 34.615 | 0.00 | 0.00 | 31.83 | 1.90 |
2227 | 4807 | 2.113860 | AGTGTGCATGCCTACGAAAT | 57.886 | 45.000 | 16.68 | 0.00 | 0.00 | 2.17 |
2262 | 4843 | 4.398319 | AGTGTACAAAATAGCACAAGCCT | 58.602 | 39.130 | 0.00 | 0.00 | 43.56 | 4.58 |
2264 | 4845 | 5.411669 | ACCTAGTGTACAAAATAGCACAAGC | 59.588 | 40.000 | 0.00 | 0.00 | 42.56 | 4.01 |
2318 | 4899 | 5.647658 | CCATCATTTGCTCCACTACAGTAAA | 59.352 | 40.000 | 0.00 | 0.00 | 31.17 | 2.01 |
2578 | 5159 | 7.873719 | TTTTCTAACAAACAAGATGGACTCA | 57.126 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2610 | 5191 | 3.209410 | CCCTGCACAGATATTGGTTCTC | 58.791 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2668 | 5250 | 6.884836 | ACTAATTAATCACCTGAAACCCAGAC | 59.115 | 38.462 | 0.00 | 0.00 | 45.78 | 3.51 |
3024 | 5606 | 2.965562 | AGAGAGCTACATAAGACCCCC | 58.034 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
3029 | 5611 | 7.573843 | GCAAAAAGCAAAGAGAGCTACATAAGA | 60.574 | 37.037 | 0.00 | 0.00 | 42.53 | 2.10 |
3101 | 5683 | 8.673711 | CAACCTAAATTTCGAAGACATGGAATA | 58.326 | 33.333 | 13.06 | 0.00 | 34.32 | 1.75 |
3183 | 5765 | 7.626452 | GCAATAAAGGTAAGCAGGTAACAGAAG | 60.626 | 40.741 | 0.00 | 0.00 | 41.41 | 2.85 |
3217 | 5800 | 8.892723 | CACAATCTACAAAATAAGTATGGCAGA | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
3418 | 6001 | 3.612860 | GCAGTTTGGTCTATACAGTGACG | 59.387 | 47.826 | 0.00 | 0.00 | 34.31 | 4.35 |
3545 | 6128 | 8.064814 | CACCTAAGATAAAAGAAGCGCTTAATC | 58.935 | 37.037 | 25.11 | 18.89 | 35.24 | 1.75 |
3763 | 6346 | 4.672587 | ATACCAAGTACTCATGCATCGT | 57.327 | 40.909 | 0.00 | 0.00 | 0.00 | 3.73 |
3853 | 6437 | 5.458041 | ACATTGGGAAGTGAAAATGAGTG | 57.542 | 39.130 | 0.00 | 0.00 | 34.75 | 3.51 |
3864 | 6448 | 6.415573 | GGAAGTTCACTATACATTGGGAAGT | 58.584 | 40.000 | 5.01 | 0.00 | 31.51 | 3.01 |
3866 | 6450 | 5.251932 | TGGGAAGTTCACTATACATTGGGAA | 59.748 | 40.000 | 6.69 | 0.00 | 0.00 | 3.97 |
3911 | 6495 | 7.335924 | GGTAAGTTTTATACCATGACTTGCAGA | 59.664 | 37.037 | 10.08 | 0.00 | 42.02 | 4.26 |
3936 | 6520 | 1.679680 | CAGCTATTTGGCATGGACTGG | 59.320 | 52.381 | 0.00 | 0.00 | 34.17 | 4.00 |
3937 | 6521 | 2.357009 | GACAGCTATTTGGCATGGACTG | 59.643 | 50.000 | 0.00 | 0.00 | 34.17 | 3.51 |
3963 | 6547 | 6.492254 | AGACGTAACTGAAAAACAATTCACC | 58.508 | 36.000 | 0.00 | 0.00 | 35.55 | 4.02 |
3969 | 6553 | 9.493206 | GATAACAAAGACGTAACTGAAAAACAA | 57.507 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
3983 | 6567 | 6.632834 | CAGGTTTGAACAAGATAACAAAGACG | 59.367 | 38.462 | 0.00 | 0.00 | 33.86 | 4.18 |
3988 | 6572 | 5.359576 | AGCACAGGTTTGAACAAGATAACAA | 59.640 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4026 | 6610 | 5.542779 | CTCTAAACAGCTAAGGACACAAGT | 58.457 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
4067 | 6651 | 7.264221 | ACATTTTGTCATTGCTGTGTTTTCTA | 58.736 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
4072 | 6656 | 6.740411 | AAAACATTTTGTCATTGCTGTGTT | 57.260 | 29.167 | 0.00 | 0.00 | 0.00 | 3.32 |
4174 | 6766 | 1.234821 | TGGTTTTTGGTCAGCTAGCG | 58.765 | 50.000 | 9.55 | 4.60 | 0.00 | 4.26 |
4207 | 6799 | 4.698625 | AGGGCGGTCGGAGTTCCT | 62.699 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
4213 | 6805 | 1.707106 | TTTATATCAGGGCGGTCGGA | 58.293 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
4216 | 6808 | 3.813724 | GGAAGTTTTATATCAGGGCGGTC | 59.186 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
4217 | 6809 | 3.458487 | AGGAAGTTTTATATCAGGGCGGT | 59.542 | 43.478 | 0.00 | 0.00 | 0.00 | 5.68 |
4223 | 6815 | 3.876914 | TGCGGCAGGAAGTTTTATATCAG | 59.123 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
4252 | 6844 | 1.869342 | GCAACCACAATCAGGCACAAC | 60.869 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
4254 | 6846 | 1.462731 | GGCAACCACAATCAGGCACA | 61.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
4320 | 6912 | 1.301244 | CAGCTTCGACCAGCACAGT | 60.301 | 57.895 | 11.49 | 0.00 | 42.84 | 3.55 |
4324 | 6916 | 4.704833 | GCCCAGCTTCGACCAGCA | 62.705 | 66.667 | 11.49 | 0.00 | 42.84 | 4.41 |
4332 | 6924 | 1.142097 | GTAGGAGACGCCCAGCTTC | 59.858 | 63.158 | 0.00 | 0.00 | 37.37 | 3.86 |
4399 | 6991 | 3.626924 | ACGAAAGAGGTGCCCGCT | 61.627 | 61.111 | 0.00 | 0.00 | 34.48 | 5.52 |
4413 | 7005 | 0.035343 | AGACGGAGAGGACATCACGA | 60.035 | 55.000 | 10.45 | 0.00 | 35.38 | 4.35 |
4416 | 7008 | 3.192799 | GGAGACGGAGAGGACATCA | 57.807 | 57.895 | 0.00 | 0.00 | 0.00 | 3.07 |
4447 | 7039 | 0.103937 | GGAGCCTCTCGACATTCCAG | 59.896 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4451 | 7043 | 2.427245 | CCCGGAGCCTCTCGACATT | 61.427 | 63.158 | 0.73 | 0.00 | 0.00 | 2.71 |
4471 | 7063 | 3.774959 | AATCTAGCGCCAGCCGACG | 62.775 | 63.158 | 2.29 | 0.00 | 46.67 | 5.12 |
4474 | 7066 | 2.663188 | GGAATCTAGCGCCAGCCG | 60.663 | 66.667 | 2.29 | 0.00 | 46.67 | 5.52 |
4479 | 7071 | 1.591863 | GACGTGGGAATCTAGCGCC | 60.592 | 63.158 | 2.29 | 0.00 | 0.00 | 6.53 |
4481 | 7073 | 0.866061 | CGTGACGTGGGAATCTAGCG | 60.866 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4502 | 7094 | 0.665369 | AAAACTACGTCAGGCCGTCG | 60.665 | 55.000 | 13.77 | 13.77 | 42.00 | 5.12 |
4503 | 7095 | 0.788391 | CAAAACTACGTCAGGCCGTC | 59.212 | 55.000 | 0.00 | 0.00 | 42.00 | 4.79 |
4504 | 7096 | 0.601841 | CCAAAACTACGTCAGGCCGT | 60.602 | 55.000 | 0.00 | 0.00 | 44.50 | 5.68 |
4505 | 7097 | 1.296056 | CCCAAAACTACGTCAGGCCG | 61.296 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4506 | 7098 | 0.958876 | CCCCAAAACTACGTCAGGCC | 60.959 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4507 | 7099 | 0.958876 | CCCCCAAAACTACGTCAGGC | 60.959 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4508 | 7100 | 0.958876 | GCCCCCAAAACTACGTCAGG | 60.959 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4509 | 7101 | 1.296056 | CGCCCCCAAAACTACGTCAG | 61.296 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4510 | 7102 | 1.301874 | CGCCCCCAAAACTACGTCA | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
4511 | 7103 | 2.036571 | CCGCCCCCAAAACTACGTC | 61.037 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
4512 | 7104 | 2.032987 | CCGCCCCCAAAACTACGT | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 3.57 |
4513 | 7105 | 2.748647 | CCCGCCCCCAAAACTACG | 60.749 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4514 | 7106 | 2.219449 | ATCCCCGCCCCCAAAACTAC | 62.219 | 60.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4515 | 7107 | 1.931705 | ATCCCCGCCCCCAAAACTA | 60.932 | 57.895 | 0.00 | 0.00 | 0.00 | 2.24 |
4516 | 7108 | 3.272847 | ATCCCCGCCCCCAAAACT | 61.273 | 61.111 | 0.00 | 0.00 | 0.00 | 2.66 |
4517 | 7109 | 3.074369 | CATCCCCGCCCCCAAAAC | 61.074 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
4518 | 7110 | 3.595758 | ACATCCCCGCCCCCAAAA | 61.596 | 61.111 | 0.00 | 0.00 | 0.00 | 2.44 |
4519 | 7111 | 4.374584 | CACATCCCCGCCCCCAAA | 62.375 | 66.667 | 0.00 | 0.00 | 0.00 | 3.28 |
4527 | 7119 | 4.175337 | ATGGTCGCCACATCCCCG | 62.175 | 66.667 | 0.50 | 0.00 | 35.80 | 5.73 |
4528 | 7120 | 2.343475 | ATCATGGTCGCCACATCCCC | 62.343 | 60.000 | 0.50 | 0.00 | 35.80 | 4.81 |
4529 | 7121 | 0.886490 | GATCATGGTCGCCACATCCC | 60.886 | 60.000 | 0.50 | 0.00 | 35.80 | 3.85 |
4530 | 7122 | 0.107456 | AGATCATGGTCGCCACATCC | 59.893 | 55.000 | 0.00 | 0.00 | 35.80 | 3.51 |
4531 | 7123 | 1.869767 | GAAGATCATGGTCGCCACATC | 59.130 | 52.381 | 0.00 | 6.24 | 35.80 | 3.06 |
4532 | 7124 | 1.475751 | GGAAGATCATGGTCGCCACAT | 60.476 | 52.381 | 13.94 | 0.00 | 35.80 | 3.21 |
4533 | 7125 | 0.107703 | GGAAGATCATGGTCGCCACA | 60.108 | 55.000 | 13.94 | 0.00 | 35.80 | 4.17 |
4534 | 7126 | 0.107703 | TGGAAGATCATGGTCGCCAC | 60.108 | 55.000 | 16.64 | 3.44 | 35.80 | 5.01 |
4535 | 7127 | 0.107703 | GTGGAAGATCATGGTCGCCA | 60.108 | 55.000 | 16.64 | 16.64 | 38.19 | 5.69 |
4536 | 7128 | 0.815615 | GGTGGAAGATCATGGTCGCC | 60.816 | 60.000 | 12.43 | 12.43 | 0.00 | 5.54 |
4537 | 7129 | 0.179000 | AGGTGGAAGATCATGGTCGC | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4538 | 7130 | 1.482182 | TGAGGTGGAAGATCATGGTCG | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
4539 | 7131 | 3.274288 | GTTGAGGTGGAAGATCATGGTC | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4540 | 7132 | 2.025887 | GGTTGAGGTGGAAGATCATGGT | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4541 | 7133 | 2.648059 | GGTTGAGGTGGAAGATCATGG | 58.352 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
4542 | 7134 | 2.025981 | TGGGTTGAGGTGGAAGATCATG | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4543 | 7135 | 2.240667 | CTGGGTTGAGGTGGAAGATCAT | 59.759 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
4544 | 7136 | 1.630369 | CTGGGTTGAGGTGGAAGATCA | 59.370 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
4545 | 7137 | 1.065126 | CCTGGGTTGAGGTGGAAGATC | 60.065 | 57.143 | 0.00 | 0.00 | 0.00 | 2.75 |
4546 | 7138 | 0.995024 | CCTGGGTTGAGGTGGAAGAT | 59.005 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
4547 | 7139 | 0.401395 | ACCTGGGTTGAGGTGGAAGA | 60.401 | 55.000 | 0.00 | 0.00 | 45.20 | 2.87 |
4548 | 7140 | 2.155065 | ACCTGGGTTGAGGTGGAAG | 58.845 | 57.895 | 0.00 | 0.00 | 45.20 | 3.46 |
4549 | 7141 | 4.430388 | ACCTGGGTTGAGGTGGAA | 57.570 | 55.556 | 0.00 | 0.00 | 45.20 | 3.53 |
4554 | 7146 | 1.296715 | CCGAAGACCTGGGTTGAGG | 59.703 | 63.158 | 0.00 | 0.00 | 39.28 | 3.86 |
4555 | 7147 | 1.192146 | TCCCGAAGACCTGGGTTGAG | 61.192 | 60.000 | 0.00 | 0.00 | 46.13 | 3.02 |
4556 | 7148 | 1.152204 | TCCCGAAGACCTGGGTTGA | 60.152 | 57.895 | 0.00 | 0.00 | 46.13 | 3.18 |
4557 | 7149 | 1.296715 | CTCCCGAAGACCTGGGTTG | 59.703 | 63.158 | 0.00 | 0.00 | 46.13 | 3.77 |
4558 | 7150 | 2.593956 | GCTCCCGAAGACCTGGGTT | 61.594 | 63.158 | 0.00 | 0.00 | 46.13 | 4.11 |
4559 | 7151 | 3.003763 | GCTCCCGAAGACCTGGGT | 61.004 | 66.667 | 0.00 | 0.00 | 46.13 | 4.51 |
4561 | 7153 | 3.068691 | TCGCTCCCGAAGACCTGG | 61.069 | 66.667 | 0.00 | 0.00 | 41.17 | 4.45 |
4575 | 7167 | 1.332997 | CTCCAATCTTCAGCCAATCGC | 59.667 | 52.381 | 0.00 | 0.00 | 37.98 | 4.58 |
4576 | 7168 | 2.636830 | ACTCCAATCTTCAGCCAATCG | 58.363 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
4577 | 7169 | 3.379688 | GGAACTCCAATCTTCAGCCAATC | 59.620 | 47.826 | 0.00 | 0.00 | 35.64 | 2.67 |
4578 | 7170 | 3.245371 | TGGAACTCCAATCTTCAGCCAAT | 60.245 | 43.478 | 0.00 | 0.00 | 44.35 | 3.16 |
4579 | 7171 | 2.108075 | TGGAACTCCAATCTTCAGCCAA | 59.892 | 45.455 | 0.00 | 0.00 | 44.35 | 4.52 |
4580 | 7172 | 1.704628 | TGGAACTCCAATCTTCAGCCA | 59.295 | 47.619 | 0.00 | 0.00 | 44.35 | 4.75 |
4581 | 7173 | 2.496899 | TGGAACTCCAATCTTCAGCC | 57.503 | 50.000 | 0.00 | 0.00 | 44.35 | 4.85 |
4592 | 7184 | 0.462759 | CAGAGCGGGAATGGAACTCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4593 | 7185 | 1.092345 | GCAGAGCGGGAATGGAACTC | 61.092 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4594 | 7186 | 1.078143 | GCAGAGCGGGAATGGAACT | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
4595 | 7187 | 3.502572 | GCAGAGCGGGAATGGAAC | 58.497 | 61.111 | 0.00 | 0.00 | 0.00 | 3.62 |
4618 | 7210 | 4.697756 | TACGCTGCCAGCCCACAC | 62.698 | 66.667 | 11.83 | 0.00 | 38.18 | 3.82 |
4619 | 7211 | 4.697756 | GTACGCTGCCAGCCCACA | 62.698 | 66.667 | 11.83 | 0.00 | 38.18 | 4.17 |
4620 | 7212 | 4.394712 | AGTACGCTGCCAGCCCAC | 62.395 | 66.667 | 11.83 | 9.12 | 38.18 | 4.61 |
4621 | 7213 | 4.393155 | CAGTACGCTGCCAGCCCA | 62.393 | 66.667 | 11.83 | 0.00 | 38.18 | 5.36 |
4622 | 7214 | 3.391665 | ATCAGTACGCTGCCAGCCC | 62.392 | 63.158 | 11.83 | 0.00 | 42.29 | 5.19 |
4623 | 7215 | 2.176273 | CATCAGTACGCTGCCAGCC | 61.176 | 63.158 | 11.83 | 0.00 | 42.29 | 4.85 |
4624 | 7216 | 2.176273 | CCATCAGTACGCTGCCAGC | 61.176 | 63.158 | 6.63 | 6.63 | 42.29 | 4.85 |
4625 | 7217 | 4.115279 | CCATCAGTACGCTGCCAG | 57.885 | 61.111 | 0.00 | 0.00 | 42.29 | 4.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.