Multiple sequence alignment - TraesCS5B01G106600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G106600 chr5B 100.000 2576 0 0 1 2576 144466721 144469296 0.000000e+00 4758
1 TraesCS5B01G106600 chr5D 95.164 1675 43 13 465 2115 133281140 133282800 0.000000e+00 2610
2 TraesCS5B01G106600 chr5D 96.567 466 16 0 2111 2576 133283059 133283524 0.000000e+00 773
3 TraesCS5B01G106600 chr5D 90.950 442 31 4 6 445 133213028 133213462 1.030000e-163 586
4 TraesCS5B01G106600 chr5D 83.214 280 45 2 69 347 495134763 495135041 3.290000e-64 255
5 TraesCS5B01G106600 chr5A 91.645 383 32 0 1679 2061 149373942 149373560 4.880000e-147 531
6 TraesCS5B01G106600 chr5A 93.805 226 14 0 608 833 149385169 149384944 8.830000e-90 340
7 TraesCS5B01G106600 chr5A 90.385 156 3 4 830 980 149374097 149373949 7.270000e-46 195
8 TraesCS5B01G106600 chr6A 89.398 349 28 3 1 347 503815192 503815533 5.090000e-117 431
9 TraesCS5B01G106600 chr6B 88.252 349 38 3 1 347 545265165 545265512 5.130000e-112 414
10 TraesCS5B01G106600 chr4D 86.257 342 46 1 1 341 485676549 485676890 1.130000e-98 370
11 TraesCS5B01G106600 chr3D 82.182 275 44 4 69 341 381004204 381003933 5.540000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G106600 chr5B 144466721 144469296 2575 False 4758.0 4758 100.0000 1 2576 1 chr5B.!!$F1 2575
1 TraesCS5B01G106600 chr5D 133281140 133283524 2384 False 1691.5 2610 95.8655 465 2576 2 chr5D.!!$F3 2111
2 TraesCS5B01G106600 chr5A 149373560 149374097 537 True 363.0 531 91.0150 830 2061 2 chr5A.!!$R2 1231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.034337 GTCAGAAACCACGCCCAGTA 59.966 55.0 0.0 0.0 0.0 2.74 F
207 208 0.036306 CCCAGTAACGGTCAAAGCCT 59.964 55.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 1216 0.526211 CGCCTGCAGTAGACTGTACA 59.474 55.0 13.81 0.0 45.45 2.9 R
2051 2089 0.915364 GAGCATCCCCTTCTTCCTGT 59.085 55.0 0.00 0.0 0.00 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.694364 AGTCAGAATATGCGCCCAG 57.306 52.632 4.18 0.00 0.00 4.45
29 30 4.368391 CGCCCAGCATCTATGACC 57.632 61.111 0.00 0.00 0.00 4.02
30 31 1.665916 CGCCCAGCATCTATGACCG 60.666 63.158 0.00 0.00 0.00 4.79
31 32 1.447643 GCCCAGCATCTATGACCGT 59.552 57.895 0.00 0.00 0.00 4.83
32 33 0.882042 GCCCAGCATCTATGACCGTG 60.882 60.000 0.00 0.00 0.00 4.94
33 34 0.882042 CCCAGCATCTATGACCGTGC 60.882 60.000 0.00 0.00 37.84 5.34
34 35 0.179076 CCAGCATCTATGACCGTGCA 60.179 55.000 0.00 0.00 39.94 4.57
35 36 1.655484 CAGCATCTATGACCGTGCAA 58.345 50.000 0.00 0.00 39.94 4.08
36 37 1.328680 CAGCATCTATGACCGTGCAAC 59.671 52.381 0.00 0.00 39.94 4.17
37 38 0.657840 GCATCTATGACCGTGCAACC 59.342 55.000 0.00 0.00 37.52 3.77
38 39 0.930310 CATCTATGACCGTGCAACCG 59.070 55.000 0.00 0.00 0.00 4.44
39 40 0.810031 ATCTATGACCGTGCAACCGC 60.810 55.000 0.00 0.00 39.24 5.68
40 41 1.447838 CTATGACCGTGCAACCGCT 60.448 57.895 0.00 0.00 39.64 5.52
41 42 1.004320 TATGACCGTGCAACCGCTT 60.004 52.632 0.00 0.00 39.64 4.68
42 43 0.246910 TATGACCGTGCAACCGCTTA 59.753 50.000 0.00 0.00 39.64 3.09
43 44 1.296056 ATGACCGTGCAACCGCTTAC 61.296 55.000 0.00 0.00 39.64 2.34
44 45 1.957186 GACCGTGCAACCGCTTACA 60.957 57.895 0.00 0.00 39.64 2.41
45 46 1.897398 GACCGTGCAACCGCTTACAG 61.897 60.000 0.00 0.00 39.64 2.74
46 47 1.666553 CCGTGCAACCGCTTACAGA 60.667 57.895 0.00 0.00 39.64 3.41
47 48 1.626654 CCGTGCAACCGCTTACAGAG 61.627 60.000 0.00 0.00 39.64 3.35
48 49 1.626654 CGTGCAACCGCTTACAGAGG 61.627 60.000 0.00 0.00 41.31 3.69
53 54 1.972978 ACCGCTTACAGAGGTGTCC 59.027 57.895 0.00 0.00 46.88 4.02
54 55 1.218316 CCGCTTACAGAGGTGTCCC 59.782 63.158 0.00 0.00 38.19 4.46
55 56 1.541310 CCGCTTACAGAGGTGTCCCA 61.541 60.000 0.00 0.00 38.19 4.37
56 57 0.537188 CGCTTACAGAGGTGTCCCAT 59.463 55.000 0.00 0.00 38.19 4.00
57 58 1.754803 CGCTTACAGAGGTGTCCCATA 59.245 52.381 0.00 0.00 38.19 2.74
58 59 2.167693 CGCTTACAGAGGTGTCCCATAA 59.832 50.000 0.00 0.00 38.19 1.90
59 60 3.738281 CGCTTACAGAGGTGTCCCATAAG 60.738 52.174 0.00 0.00 38.19 1.73
60 61 3.197983 GCTTACAGAGGTGTCCCATAAGT 59.802 47.826 0.00 0.00 38.19 2.24
61 62 4.680975 GCTTACAGAGGTGTCCCATAAGTC 60.681 50.000 0.00 0.00 38.19 3.01
62 63 1.825474 ACAGAGGTGTCCCATAAGTCG 59.175 52.381 0.00 0.00 26.76 4.18
63 64 1.137086 CAGAGGTGTCCCATAAGTCGG 59.863 57.143 0.00 0.00 0.00 4.79
64 65 1.006758 AGAGGTGTCCCATAAGTCGGA 59.993 52.381 0.00 0.00 0.00 4.55
70 71 3.027974 GTCCCATAAGTCGGACTATGC 57.972 52.381 11.71 0.98 44.40 3.14
71 72 1.611977 TCCCATAAGTCGGACTATGCG 59.388 52.381 11.71 8.11 0.00 4.73
72 73 1.419374 CCATAAGTCGGACTATGCGC 58.581 55.000 11.71 0.00 0.00 6.09
73 74 1.419374 CATAAGTCGGACTATGCGCC 58.581 55.000 11.71 0.00 0.00 6.53
74 75 0.317479 ATAAGTCGGACTATGCGCCC 59.683 55.000 11.71 0.00 0.00 6.13
75 76 1.038681 TAAGTCGGACTATGCGCCCA 61.039 55.000 11.71 0.00 0.00 5.36
76 77 2.573609 AAGTCGGACTATGCGCCCAC 62.574 60.000 11.71 0.00 0.00 4.61
77 78 3.845259 TCGGACTATGCGCCCACC 61.845 66.667 4.18 0.16 0.00 4.61
78 79 4.155733 CGGACTATGCGCCCACCA 62.156 66.667 4.18 0.00 0.00 4.17
79 80 2.510906 GGACTATGCGCCCACCAT 59.489 61.111 4.18 0.00 0.00 3.55
80 81 1.598130 GGACTATGCGCCCACCATC 60.598 63.158 4.18 0.00 0.00 3.51
81 82 1.447643 GACTATGCGCCCACCATCT 59.552 57.895 4.18 0.00 0.00 2.90
82 83 0.679505 GACTATGCGCCCACCATCTA 59.320 55.000 4.18 0.00 0.00 1.98
83 84 0.393077 ACTATGCGCCCACCATCTAC 59.607 55.000 4.18 0.00 0.00 2.59
84 85 0.667487 CTATGCGCCCACCATCTACG 60.667 60.000 4.18 0.00 0.00 3.51
85 86 1.110518 TATGCGCCCACCATCTACGA 61.111 55.000 4.18 0.00 0.00 3.43
86 87 2.279517 GCGCCCACCATCTACGAG 60.280 66.667 0.00 0.00 0.00 4.18
87 88 2.279517 CGCCCACCATCTACGAGC 60.280 66.667 0.00 0.00 0.00 5.03
88 89 2.279517 GCCCACCATCTACGAGCG 60.280 66.667 0.00 0.00 0.00 5.03
89 90 2.279517 CCCACCATCTACGAGCGC 60.280 66.667 0.00 0.00 0.00 5.92
90 91 2.655364 CCACCATCTACGAGCGCG 60.655 66.667 8.75 8.75 44.79 6.86
91 92 3.323136 CACCATCTACGAGCGCGC 61.323 66.667 26.66 26.66 42.48 6.86
92 93 3.822192 ACCATCTACGAGCGCGCA 61.822 61.111 35.10 12.17 42.48 6.09
93 94 3.026879 CCATCTACGAGCGCGCAG 61.027 66.667 35.10 27.79 42.48 5.18
106 107 2.433838 CGCAGCCACTGACAGAGG 60.434 66.667 14.10 14.10 32.44 3.69
107 108 2.746359 GCAGCCACTGACAGAGGT 59.254 61.111 18.70 8.21 32.44 3.85
108 109 1.670406 GCAGCCACTGACAGAGGTG 60.670 63.158 18.70 18.72 32.44 4.00
109 110 1.750930 CAGCCACTGACAGAGGTGT 59.249 57.895 18.70 5.61 40.71 4.16
118 119 2.568623 GACAGAGGTGTCCCACAAAT 57.431 50.000 0.00 0.00 46.58 2.32
119 120 2.427506 GACAGAGGTGTCCCACAAATC 58.572 52.381 0.00 0.00 46.58 2.17
120 121 1.774254 ACAGAGGTGTCCCACAAATCA 59.226 47.619 0.00 0.00 35.86 2.57
121 122 2.224621 ACAGAGGTGTCCCACAAATCAG 60.225 50.000 0.00 0.00 35.86 2.90
122 123 2.057922 AGAGGTGTCCCACAAATCAGT 58.942 47.619 0.00 0.00 35.86 3.41
123 124 3.007940 CAGAGGTGTCCCACAAATCAGTA 59.992 47.826 0.00 0.00 35.86 2.74
124 125 3.846588 AGAGGTGTCCCACAAATCAGTAT 59.153 43.478 0.00 0.00 35.86 2.12
125 126 5.030147 AGAGGTGTCCCACAAATCAGTATA 58.970 41.667 0.00 0.00 35.86 1.47
126 127 5.667626 AGAGGTGTCCCACAAATCAGTATAT 59.332 40.000 0.00 0.00 35.86 0.86
127 128 5.684704 AGGTGTCCCACAAATCAGTATATG 58.315 41.667 0.00 0.00 35.86 1.78
128 129 4.275936 GGTGTCCCACAAATCAGTATATGC 59.724 45.833 0.00 0.00 35.86 3.14
129 130 4.024893 GTGTCCCACAAATCAGTATATGCG 60.025 45.833 0.00 0.00 34.08 4.73
130 131 3.058914 GTCCCACAAATCAGTATATGCGC 60.059 47.826 0.00 0.00 0.00 6.09
131 132 2.226437 CCCACAAATCAGTATATGCGCC 59.774 50.000 4.18 0.00 0.00 6.53
132 133 2.226437 CCACAAATCAGTATATGCGCCC 59.774 50.000 4.18 0.00 0.00 6.13
133 134 2.877786 CACAAATCAGTATATGCGCCCA 59.122 45.455 4.18 0.00 0.00 5.36
134 135 2.878406 ACAAATCAGTATATGCGCCCAC 59.122 45.455 4.18 0.00 0.00 4.61
135 136 2.185004 AATCAGTATATGCGCCCACC 57.815 50.000 4.18 0.00 0.00 4.61
136 137 1.055849 ATCAGTATATGCGCCCACCA 58.944 50.000 4.18 0.00 0.00 4.17
137 138 1.055849 TCAGTATATGCGCCCACCAT 58.944 50.000 4.18 0.00 0.00 3.55
138 139 1.001974 TCAGTATATGCGCCCACCATC 59.998 52.381 4.18 0.00 0.00 3.51
139 140 1.002430 CAGTATATGCGCCCACCATCT 59.998 52.381 4.18 0.00 0.00 2.90
140 141 2.233676 CAGTATATGCGCCCACCATCTA 59.766 50.000 4.18 0.00 0.00 1.98
141 142 2.233922 AGTATATGCGCCCACCATCTAC 59.766 50.000 4.18 0.00 0.00 2.59
142 143 0.037326 ATATGCGCCCACCATCTACG 60.037 55.000 4.18 0.00 0.00 3.51
143 144 2.094757 TATGCGCCCACCATCTACGG 62.095 60.000 4.18 0.00 0.00 4.02
144 145 4.910585 GCGCCCACCATCTACGGG 62.911 72.222 0.00 0.00 43.42 5.28
147 148 4.235762 CCCACCATCTACGGGCGG 62.236 72.222 0.00 0.00 31.89 6.13
148 149 4.235762 CCACCATCTACGGGCGGG 62.236 72.222 0.00 0.00 0.00 6.13
149 150 4.910585 CACCATCTACGGGCGGGC 62.911 72.222 0.00 0.00 0.00 6.13
151 152 4.609018 CCATCTACGGGCGGGCAG 62.609 72.222 3.27 1.15 0.00 4.85
169 170 4.394712 CCGCTGACAGGGGTGTCC 62.395 72.222 26.44 0.00 42.78 4.02
179 180 2.657237 GGGTGTCCCACGAGTCAG 59.343 66.667 0.00 0.00 44.65 3.51
180 181 1.906824 GGGTGTCCCACGAGTCAGA 60.907 63.158 0.00 0.00 44.65 3.27
181 182 1.469335 GGGTGTCCCACGAGTCAGAA 61.469 60.000 0.00 0.00 44.65 3.02
182 183 0.391597 GGTGTCCCACGAGTCAGAAA 59.608 55.000 0.00 0.00 34.83 2.52
183 184 1.499049 GTGTCCCACGAGTCAGAAAC 58.501 55.000 0.00 0.00 0.00 2.78
184 185 0.391597 TGTCCCACGAGTCAGAAACC 59.608 55.000 0.00 0.00 0.00 3.27
185 186 0.391597 GTCCCACGAGTCAGAAACCA 59.608 55.000 0.00 0.00 0.00 3.67
186 187 0.391597 TCCCACGAGTCAGAAACCAC 59.608 55.000 0.00 0.00 0.00 4.16
187 188 0.944311 CCCACGAGTCAGAAACCACG 60.944 60.000 0.00 0.00 35.34 4.94
188 189 1.557443 CCACGAGTCAGAAACCACGC 61.557 60.000 0.00 0.00 33.44 5.34
189 190 1.300697 ACGAGTCAGAAACCACGCC 60.301 57.895 0.00 0.00 33.44 5.68
190 191 2.027625 CGAGTCAGAAACCACGCCC 61.028 63.158 0.00 0.00 0.00 6.13
191 192 1.070786 GAGTCAGAAACCACGCCCA 59.929 57.895 0.00 0.00 0.00 5.36
192 193 0.951040 GAGTCAGAAACCACGCCCAG 60.951 60.000 0.00 0.00 0.00 4.45
193 194 1.227853 GTCAGAAACCACGCCCAGT 60.228 57.895 0.00 0.00 0.00 4.00
194 195 0.034337 GTCAGAAACCACGCCCAGTA 59.966 55.000 0.00 0.00 0.00 2.74
195 196 0.759959 TCAGAAACCACGCCCAGTAA 59.240 50.000 0.00 0.00 0.00 2.24
196 197 0.872388 CAGAAACCACGCCCAGTAAC 59.128 55.000 0.00 0.00 0.00 2.50
197 198 0.601841 AGAAACCACGCCCAGTAACG 60.602 55.000 0.00 0.00 0.00 3.18
198 199 1.571215 GAAACCACGCCCAGTAACGG 61.571 60.000 0.00 0.00 0.00 4.44
199 200 2.328155 AAACCACGCCCAGTAACGGT 62.328 55.000 0.00 0.00 0.00 4.83
200 201 2.433664 CCACGCCCAGTAACGGTC 60.434 66.667 0.00 0.00 0.00 4.79
201 202 2.340809 CACGCCCAGTAACGGTCA 59.659 61.111 0.00 0.00 0.00 4.02
202 203 1.301087 CACGCCCAGTAACGGTCAA 60.301 57.895 0.00 0.00 0.00 3.18
203 204 0.881159 CACGCCCAGTAACGGTCAAA 60.881 55.000 0.00 0.00 0.00 2.69
204 205 0.601841 ACGCCCAGTAACGGTCAAAG 60.602 55.000 0.00 0.00 0.00 2.77
205 206 1.873863 GCCCAGTAACGGTCAAAGC 59.126 57.895 0.00 0.00 0.00 3.51
206 207 1.583495 GCCCAGTAACGGTCAAAGCC 61.583 60.000 0.00 0.00 0.00 4.35
207 208 0.036306 CCCAGTAACGGTCAAAGCCT 59.964 55.000 0.00 0.00 0.00 4.58
208 209 1.544759 CCCAGTAACGGTCAAAGCCTT 60.545 52.381 0.00 0.00 0.00 4.35
209 210 2.227194 CCAGTAACGGTCAAAGCCTTT 58.773 47.619 0.00 0.00 0.00 3.11
210 211 2.031157 CCAGTAACGGTCAAAGCCTTTG 60.031 50.000 10.99 10.99 41.96 2.77
211 212 2.875933 CAGTAACGGTCAAAGCCTTTGA 59.124 45.455 15.70 15.70 46.68 2.69
218 219 1.497991 TCAAAGCCTTTGACTCGACG 58.502 50.000 15.70 0.00 44.21 5.12
219 220 0.110644 CAAAGCCTTTGACTCGACGC 60.111 55.000 11.83 0.00 43.26 5.19
220 221 1.228657 AAAGCCTTTGACTCGACGCC 61.229 55.000 0.00 0.00 0.00 5.68
221 222 2.357034 GCCTTTGACTCGACGCCA 60.357 61.111 0.00 0.00 0.00 5.69
222 223 1.959226 GCCTTTGACTCGACGCCAA 60.959 57.895 0.00 0.00 0.00 4.52
223 224 1.503818 GCCTTTGACTCGACGCCAAA 61.504 55.000 8.70 8.70 0.00 3.28
224 225 0.234884 CCTTTGACTCGACGCCAAAC 59.765 55.000 0.00 0.00 0.00 2.93
225 226 0.234884 CTTTGACTCGACGCCAAACC 59.765 55.000 0.00 0.00 0.00 3.27
226 227 1.161563 TTTGACTCGACGCCAAACCC 61.162 55.000 0.00 0.00 0.00 4.11
227 228 2.741211 GACTCGACGCCAAACCCC 60.741 66.667 0.00 0.00 0.00 4.95
228 229 4.675029 ACTCGACGCCAAACCCCG 62.675 66.667 0.00 0.00 0.00 5.73
229 230 4.675029 CTCGACGCCAAACCCCGT 62.675 66.667 0.00 0.00 40.85 5.28
230 231 4.238654 TCGACGCCAAACCCCGTT 62.239 61.111 0.00 0.00 37.87 4.44
231 232 3.281395 CGACGCCAAACCCCGTTT 61.281 61.111 0.00 0.00 37.87 3.60
244 245 3.737172 CGTTTGGGCTCGGGCAAG 61.737 66.667 10.74 0.00 40.87 4.01
245 246 3.373565 GTTTGGGCTCGGGCAAGG 61.374 66.667 10.74 0.00 40.87 3.61
246 247 4.676951 TTTGGGCTCGGGCAAGGG 62.677 66.667 10.74 0.00 40.87 3.95
269 270 3.636231 CGCACAGTGGAGGGGGAA 61.636 66.667 1.84 0.00 0.00 3.97
270 271 2.843545 GCACAGTGGAGGGGGAAA 59.156 61.111 1.84 0.00 0.00 3.13
271 272 1.303643 GCACAGTGGAGGGGGAAAG 60.304 63.158 1.84 0.00 0.00 2.62
272 273 2.069165 GCACAGTGGAGGGGGAAAGT 62.069 60.000 1.84 0.00 0.00 2.66
273 274 0.250901 CACAGTGGAGGGGGAAAGTG 60.251 60.000 0.00 0.00 0.00 3.16
274 275 0.401395 ACAGTGGAGGGGGAAAGTGA 60.401 55.000 0.00 0.00 0.00 3.41
275 276 0.326264 CAGTGGAGGGGGAAAGTGAG 59.674 60.000 0.00 0.00 0.00 3.51
276 277 0.842467 AGTGGAGGGGGAAAGTGAGG 60.842 60.000 0.00 0.00 0.00 3.86
277 278 0.840722 GTGGAGGGGGAAAGTGAGGA 60.841 60.000 0.00 0.00 0.00 3.71
278 279 0.840722 TGGAGGGGGAAAGTGAGGAC 60.841 60.000 0.00 0.00 0.00 3.85
279 280 0.547954 GGAGGGGGAAAGTGAGGACT 60.548 60.000 0.00 0.00 0.00 3.85
280 281 0.615850 GAGGGGGAAAGTGAGGACTG 59.384 60.000 0.00 0.00 30.61 3.51
281 282 0.842467 AGGGGGAAAGTGAGGACTGG 60.842 60.000 0.00 0.00 30.61 4.00
282 283 1.002011 GGGGAAAGTGAGGACTGGC 60.002 63.158 0.00 0.00 30.61 4.85
283 284 1.492993 GGGGAAAGTGAGGACTGGCT 61.493 60.000 0.00 0.00 30.61 4.75
284 285 0.402121 GGGAAAGTGAGGACTGGCTT 59.598 55.000 0.00 0.00 30.61 4.35
285 286 1.628846 GGGAAAGTGAGGACTGGCTTA 59.371 52.381 0.00 0.00 30.61 3.09
286 287 2.355209 GGGAAAGTGAGGACTGGCTTAG 60.355 54.545 0.00 0.00 30.61 2.18
287 288 2.303311 GGAAAGTGAGGACTGGCTTAGT 59.697 50.000 0.00 0.00 44.02 2.24
288 289 3.330267 GAAAGTGAGGACTGGCTTAGTG 58.670 50.000 0.00 0.00 40.53 2.74
292 293 3.188786 GGACTGGCTTAGTGCGCG 61.189 66.667 0.00 0.00 40.53 6.86
293 294 3.188786 GACTGGCTTAGTGCGCGG 61.189 66.667 8.83 0.00 40.53 6.46
294 295 4.760047 ACTGGCTTAGTGCGCGGG 62.760 66.667 8.83 0.00 44.05 6.13
305 306 4.404654 GCGCGGGCAAAACTGAGG 62.405 66.667 20.76 0.00 39.62 3.86
306 307 2.668212 CGCGGGCAAAACTGAGGA 60.668 61.111 0.00 0.00 0.00 3.71
307 308 2.680913 CGCGGGCAAAACTGAGGAG 61.681 63.158 0.00 0.00 0.00 3.69
308 309 2.335712 GCGGGCAAAACTGAGGAGG 61.336 63.158 0.00 0.00 0.00 4.30
309 310 1.374947 CGGGCAAAACTGAGGAGGA 59.625 57.895 0.00 0.00 0.00 3.71
310 311 0.955919 CGGGCAAAACTGAGGAGGAC 60.956 60.000 0.00 0.00 0.00 3.85
311 312 0.402121 GGGCAAAACTGAGGAGGACT 59.598 55.000 0.00 0.00 0.00 3.85
312 313 1.628846 GGGCAAAACTGAGGAGGACTA 59.371 52.381 0.00 0.00 0.00 2.59
313 314 2.039879 GGGCAAAACTGAGGAGGACTAA 59.960 50.000 0.00 0.00 0.00 2.24
314 315 3.339141 GGCAAAACTGAGGAGGACTAAG 58.661 50.000 0.00 0.00 33.42 2.18
315 316 2.744741 GCAAAACTGAGGAGGACTAAGC 59.255 50.000 0.00 0.00 29.75 3.09
316 317 2.996621 CAAAACTGAGGAGGACTAAGCG 59.003 50.000 0.00 0.00 29.75 4.68
317 318 2.217510 AACTGAGGAGGACTAAGCGA 57.782 50.000 0.00 0.00 29.75 4.93
318 319 2.217510 ACTGAGGAGGACTAAGCGAA 57.782 50.000 0.00 0.00 29.75 4.70
319 320 2.096248 ACTGAGGAGGACTAAGCGAAG 58.904 52.381 0.00 0.00 29.75 3.79
320 321 2.291024 ACTGAGGAGGACTAAGCGAAGA 60.291 50.000 0.00 0.00 29.75 2.87
321 322 2.357637 CTGAGGAGGACTAAGCGAAGAG 59.642 54.545 0.00 0.00 0.00 2.85
322 323 1.679153 GAGGAGGACTAAGCGAAGAGG 59.321 57.143 0.00 0.00 0.00 3.69
323 324 0.747852 GGAGGACTAAGCGAAGAGGG 59.252 60.000 0.00 0.00 0.00 4.30
324 325 1.685491 GGAGGACTAAGCGAAGAGGGA 60.685 57.143 0.00 0.00 0.00 4.20
325 326 1.406180 GAGGACTAAGCGAAGAGGGAC 59.594 57.143 0.00 0.00 0.00 4.46
326 327 1.183549 GGACTAAGCGAAGAGGGACA 58.816 55.000 0.00 0.00 0.00 4.02
327 328 1.135053 GGACTAAGCGAAGAGGGACAC 60.135 57.143 0.00 0.00 0.00 3.67
328 329 1.544691 GACTAAGCGAAGAGGGACACA 59.455 52.381 0.00 0.00 0.00 3.72
329 330 1.546476 ACTAAGCGAAGAGGGACACAG 59.454 52.381 0.00 0.00 0.00 3.66
330 331 1.819288 CTAAGCGAAGAGGGACACAGA 59.181 52.381 0.00 0.00 0.00 3.41
331 332 1.048601 AAGCGAAGAGGGACACAGAA 58.951 50.000 0.00 0.00 0.00 3.02
332 333 1.048601 AGCGAAGAGGGACACAGAAA 58.951 50.000 0.00 0.00 0.00 2.52
333 334 1.625818 AGCGAAGAGGGACACAGAAAT 59.374 47.619 0.00 0.00 0.00 2.17
334 335 2.832129 AGCGAAGAGGGACACAGAAATA 59.168 45.455 0.00 0.00 0.00 1.40
335 336 3.118956 AGCGAAGAGGGACACAGAAATAG 60.119 47.826 0.00 0.00 0.00 1.73
336 337 3.119101 GCGAAGAGGGACACAGAAATAGA 60.119 47.826 0.00 0.00 0.00 1.98
337 338 4.620803 GCGAAGAGGGACACAGAAATAGAA 60.621 45.833 0.00 0.00 0.00 2.10
338 339 5.479306 CGAAGAGGGACACAGAAATAGAAA 58.521 41.667 0.00 0.00 0.00 2.52
339 340 6.109359 CGAAGAGGGACACAGAAATAGAAAT 58.891 40.000 0.00 0.00 0.00 2.17
340 341 6.256757 CGAAGAGGGACACAGAAATAGAAATC 59.743 42.308 0.00 0.00 0.00 2.17
341 342 5.995446 AGAGGGACACAGAAATAGAAATCC 58.005 41.667 0.00 0.00 0.00 3.01
342 343 5.104318 AGAGGGACACAGAAATAGAAATCCC 60.104 44.000 0.00 0.00 44.25 3.85
343 344 4.540099 AGGGACACAGAAATAGAAATCCCA 59.460 41.667 8.62 0.00 46.01 4.37
344 345 5.194537 AGGGACACAGAAATAGAAATCCCAT 59.805 40.000 8.62 0.00 46.01 4.00
345 346 5.893824 GGGACACAGAAATAGAAATCCCATT 59.106 40.000 0.00 0.00 43.52 3.16
346 347 6.381133 GGGACACAGAAATAGAAATCCCATTT 59.619 38.462 0.00 0.00 43.52 2.32
347 348 7.559897 GGGACACAGAAATAGAAATCCCATTTA 59.440 37.037 0.00 0.00 43.52 1.40
348 349 9.136323 GGACACAGAAATAGAAATCCCATTTAT 57.864 33.333 0.00 0.00 31.47 1.40
383 384 9.956720 AATTAAGCTTGCACATTATCAACTATC 57.043 29.630 9.86 0.00 0.00 2.08
384 385 8.504812 TTAAGCTTGCACATTATCAACTATCA 57.495 30.769 9.86 0.00 0.00 2.15
385 386 7.395190 AAGCTTGCACATTATCAACTATCAA 57.605 32.000 0.00 0.00 0.00 2.57
386 387 6.789262 AGCTTGCACATTATCAACTATCAAC 58.211 36.000 0.00 0.00 0.00 3.18
387 388 6.600822 AGCTTGCACATTATCAACTATCAACT 59.399 34.615 0.00 0.00 0.00 3.16
388 389 6.909357 GCTTGCACATTATCAACTATCAACTC 59.091 38.462 0.00 0.00 0.00 3.01
389 390 6.588348 TGCACATTATCAACTATCAACTCG 57.412 37.500 0.00 0.00 0.00 4.18
390 391 5.006649 TGCACATTATCAACTATCAACTCGC 59.993 40.000 0.00 0.00 0.00 5.03
391 392 5.235186 GCACATTATCAACTATCAACTCGCT 59.765 40.000 0.00 0.00 0.00 4.93
392 393 6.238211 GCACATTATCAACTATCAACTCGCTT 60.238 38.462 0.00 0.00 0.00 4.68
393 394 7.042725 GCACATTATCAACTATCAACTCGCTTA 60.043 37.037 0.00 0.00 0.00 3.09
394 395 8.269424 CACATTATCAACTATCAACTCGCTTAC 58.731 37.037 0.00 0.00 0.00 2.34
395 396 7.438459 ACATTATCAACTATCAACTCGCTTACC 59.562 37.037 0.00 0.00 0.00 2.85
396 397 4.794278 TCAACTATCAACTCGCTTACCA 57.206 40.909 0.00 0.00 0.00 3.25
397 398 5.339008 TCAACTATCAACTCGCTTACCAT 57.661 39.130 0.00 0.00 0.00 3.55
398 399 5.730550 TCAACTATCAACTCGCTTACCATT 58.269 37.500 0.00 0.00 0.00 3.16
399 400 5.580691 TCAACTATCAACTCGCTTACCATTG 59.419 40.000 0.00 0.00 0.00 2.82
400 401 5.086104 ACTATCAACTCGCTTACCATTGT 57.914 39.130 0.00 0.00 0.00 2.71
401 402 5.109903 ACTATCAACTCGCTTACCATTGTC 58.890 41.667 0.00 0.00 0.00 3.18
402 403 3.678056 TCAACTCGCTTACCATTGTCT 57.322 42.857 0.00 0.00 0.00 3.41
403 404 4.002906 TCAACTCGCTTACCATTGTCTT 57.997 40.909 0.00 0.00 0.00 3.01
404 405 3.994392 TCAACTCGCTTACCATTGTCTTC 59.006 43.478 0.00 0.00 0.00 2.87
405 406 3.963428 ACTCGCTTACCATTGTCTTCT 57.037 42.857 0.00 0.00 0.00 2.85
406 407 4.273148 ACTCGCTTACCATTGTCTTCTT 57.727 40.909 0.00 0.00 0.00 2.52
407 408 4.642429 ACTCGCTTACCATTGTCTTCTTT 58.358 39.130 0.00 0.00 0.00 2.52
408 409 5.063880 ACTCGCTTACCATTGTCTTCTTTT 58.936 37.500 0.00 0.00 0.00 2.27
409 410 5.179555 ACTCGCTTACCATTGTCTTCTTTTC 59.820 40.000 0.00 0.00 0.00 2.29
410 411 5.305585 TCGCTTACCATTGTCTTCTTTTCT 58.694 37.500 0.00 0.00 0.00 2.52
411 412 5.763204 TCGCTTACCATTGTCTTCTTTTCTT 59.237 36.000 0.00 0.00 0.00 2.52
412 413 6.262273 TCGCTTACCATTGTCTTCTTTTCTTT 59.738 34.615 0.00 0.00 0.00 2.52
413 414 6.918022 CGCTTACCATTGTCTTCTTTTCTTTT 59.082 34.615 0.00 0.00 0.00 2.27
414 415 8.073768 CGCTTACCATTGTCTTCTTTTCTTTTA 58.926 33.333 0.00 0.00 0.00 1.52
415 416 9.914131 GCTTACCATTGTCTTCTTTTCTTTTAT 57.086 29.630 0.00 0.00 0.00 1.40
442 443 9.836864 ATAAGAAATATAATGCAGTCACAGACA 57.163 29.630 0.00 0.00 34.60 3.41
443 444 8.743085 AAGAAATATAATGCAGTCACAGACAT 57.257 30.769 0.00 0.00 34.60 3.06
444 445 8.151141 AGAAATATAATGCAGTCACAGACATG 57.849 34.615 0.00 0.00 34.60 3.21
445 446 6.872628 AATATAATGCAGTCACAGACATGG 57.127 37.500 0.00 0.00 34.60 3.66
446 447 1.830279 AATGCAGTCACAGACATGGG 58.170 50.000 0.00 0.00 34.60 4.00
447 448 0.679002 ATGCAGTCACAGACATGGGC 60.679 55.000 0.00 0.00 34.60 5.36
448 449 1.002868 GCAGTCACAGACATGGGCT 60.003 57.895 0.00 0.00 34.60 5.19
449 450 0.607489 GCAGTCACAGACATGGGCTT 60.607 55.000 0.00 0.00 34.60 4.35
450 451 1.446907 CAGTCACAGACATGGGCTTC 58.553 55.000 0.00 0.00 34.60 3.86
451 452 1.059098 AGTCACAGACATGGGCTTCA 58.941 50.000 0.00 0.00 34.60 3.02
452 453 1.160137 GTCACAGACATGGGCTTCAC 58.840 55.000 0.00 0.00 32.09 3.18
453 454 0.320683 TCACAGACATGGGCTTCACG 60.321 55.000 0.00 0.00 0.00 4.35
454 455 0.320683 CACAGACATGGGCTTCACGA 60.321 55.000 0.00 0.00 0.00 4.35
455 456 0.320771 ACAGACATGGGCTTCACGAC 60.321 55.000 0.00 0.00 0.00 4.34
456 457 1.079819 AGACATGGGCTTCACGACG 60.080 57.895 0.00 0.00 0.00 5.12
457 458 2.047274 ACATGGGCTTCACGACGG 60.047 61.111 0.00 0.00 0.00 4.79
458 459 3.499737 CATGGGCTTCACGACGGC 61.500 66.667 0.00 0.00 0.00 5.68
459 460 4.015406 ATGGGCTTCACGACGGCA 62.015 61.111 0.00 0.00 0.00 5.69
460 461 4.980805 TGGGCTTCACGACGGCAC 62.981 66.667 0.00 0.00 0.00 5.01
561 563 3.649023 TCTTTGCCTACACCTGGAGTTTA 59.351 43.478 0.00 0.00 0.00 2.01
563 565 5.486063 TCTTTGCCTACACCTGGAGTTTATA 59.514 40.000 0.00 0.00 0.00 0.98
603 605 3.608041 CGTGAGTCGTGACGCAAA 58.392 55.556 8.01 0.00 42.48 3.68
610 612 1.525619 AGTCGTGACGCAAAGCTTAAC 59.474 47.619 0.00 0.00 36.20 2.01
692 694 5.529581 ACCACCACCAGTTTATCAAAAAG 57.470 39.130 0.00 0.00 0.00 2.27
763 765 3.016736 CCATATCGGCAAAGTTGGTCTT 58.983 45.455 0.00 0.00 38.10 3.01
800 802 4.126390 CGACGCACTTGCTGCTCG 62.126 66.667 0.00 0.00 44.64 5.03
814 816 3.882025 CTCGGAAAGCACTCCAGC 58.118 61.111 5.09 0.00 34.91 4.85
880 883 1.143073 GGATCCCACATTCCCACTACC 59.857 57.143 0.00 0.00 0.00 3.18
944 951 2.440385 CTTCGTGGAGCCAGCACTCA 62.440 60.000 4.15 0.00 38.50 3.41
1111 1128 2.523168 TCACCGACAGCCAGACCA 60.523 61.111 0.00 0.00 0.00 4.02
1161 1178 1.267121 AGTACACCGACATGAAGGCT 58.733 50.000 0.00 0.00 0.00 4.58
1209 1226 0.800631 CTGCCGTCGTGTACAGTCTA 59.199 55.000 0.00 0.00 0.00 2.59
1277 1294 2.777536 TGGTCATGAGCAGAAGGGT 58.222 52.632 23.20 0.00 34.41 4.34
1515 1532 0.599204 TCTCCGCGTTCAACCTGTTC 60.599 55.000 4.92 0.00 0.00 3.18
1544 1561 2.597217 CGGCAACAAGGGGAGCAA 60.597 61.111 0.00 0.00 0.00 3.91
1561 1578 3.703420 AGCAATAGTACTAGAAACGGCG 58.297 45.455 4.80 4.80 0.00 6.46
1632 1649 6.788598 TCTCAGCTACTTCAGATTTCAGAT 57.211 37.500 0.00 0.00 0.00 2.90
1726 1756 2.498167 CTAAAGCATTGCGGCTCCTAT 58.502 47.619 2.38 0.00 45.07 2.57
1729 1759 0.533755 AGCATTGCGGCTCCTATGTC 60.534 55.000 2.38 0.00 41.05 3.06
1805 1835 4.493547 ACAATCAAAATATGGTGTTGGCG 58.506 39.130 0.00 0.00 0.00 5.69
1946 1976 3.327626 TCGCAGCGAAAGGTTTAATACA 58.672 40.909 17.02 0.00 41.81 2.29
1951 1981 4.843984 CAGCGAAAGGTTTAATACACAACG 59.156 41.667 0.00 0.00 41.81 4.10
1987 2017 9.617975 GTTTCATTGATAGGAAAAAGAGAGTTG 57.382 33.333 0.00 0.00 36.00 3.16
1988 2018 7.383102 TCATTGATAGGAAAAAGAGAGTTGC 57.617 36.000 0.00 0.00 0.00 4.17
1989 2019 6.942005 TCATTGATAGGAAAAAGAGAGTTGCA 59.058 34.615 0.00 0.00 0.00 4.08
1990 2020 6.808008 TTGATAGGAAAAAGAGAGTTGCAG 57.192 37.500 0.00 0.00 0.00 4.41
1991 2021 6.114187 TGATAGGAAAAAGAGAGTTGCAGA 57.886 37.500 0.00 0.00 0.00 4.26
1992 2022 6.169094 TGATAGGAAAAAGAGAGTTGCAGAG 58.831 40.000 0.00 0.00 0.00 3.35
1993 2023 4.429854 AGGAAAAAGAGAGTTGCAGAGT 57.570 40.909 0.00 0.00 0.00 3.24
1994 2024 4.786425 AGGAAAAAGAGAGTTGCAGAGTT 58.214 39.130 0.00 0.00 0.00 3.01
2045 2083 2.565841 AGAAAGCGTAGAATGGGATGC 58.434 47.619 0.00 0.00 0.00 3.91
2051 2089 2.849942 CGTAGAATGGGATGCCATGAA 58.150 47.619 20.68 5.43 0.00 2.57
2080 2118 2.903357 GGATGCTCAGCCCGAAGA 59.097 61.111 0.00 0.00 0.00 2.87
2093 2131 0.599728 CCGAAGAGAGCATGCTAGGC 60.600 60.000 22.74 12.87 0.00 3.93
2098 2136 3.517296 AGAGAGCATGCTAGGCTACTA 57.483 47.619 22.74 0.00 42.78 1.82
2142 2443 0.038892 GACGCGAACCAGGTTAGTCA 60.039 55.000 15.93 0.00 30.66 3.41
2187 2488 1.725641 ATCAGCGTTTCGATGCTTCA 58.274 45.000 4.76 0.00 43.19 3.02
2303 2604 1.334869 CTGTTGAACAAGTGGTGAGCC 59.665 52.381 0.00 0.00 0.00 4.70
2332 2633 2.314549 AGAGAGAACCTCAGGAGATGGT 59.685 50.000 0.00 0.00 44.40 3.55
2335 2636 2.834549 GAGAACCTCAGGAGATGGTCAA 59.165 50.000 0.00 0.00 29.50 3.18
2408 2709 4.814294 ACGGGCAAGTCGATCGGC 62.814 66.667 12.83 12.83 0.00 5.54
2413 2714 2.180769 CAAGTCGATCGGCGGTCA 59.819 61.111 21.38 4.53 41.33 4.02
2553 2854 1.202582 GAGCTCGCAGACTAAACTCCA 59.797 52.381 0.00 0.00 0.00 3.86
2554 2855 1.067495 AGCTCGCAGACTAAACTCCAC 60.067 52.381 0.00 0.00 0.00 4.02
2555 2856 1.067495 GCTCGCAGACTAAACTCCACT 60.067 52.381 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.533755 GCTGGGCGCATATTCTGACT 60.534 55.000 10.83 0.00 38.92 3.41
1 2 0.815213 TGCTGGGCGCATATTCTGAC 60.815 55.000 10.83 0.00 45.47 3.51
2 3 1.526405 TGCTGGGCGCATATTCTGA 59.474 52.632 10.83 0.00 45.47 3.27
3 4 4.146058 TGCTGGGCGCATATTCTG 57.854 55.556 10.83 0.00 45.47 3.02
11 12 1.963338 GGTCATAGATGCTGGGCGC 60.963 63.158 0.00 0.00 39.77 6.53
12 13 1.665916 CGGTCATAGATGCTGGGCG 60.666 63.158 0.00 0.00 0.00 6.13
13 14 0.882042 CACGGTCATAGATGCTGGGC 60.882 60.000 0.00 0.00 0.00 5.36
14 15 0.882042 GCACGGTCATAGATGCTGGG 60.882 60.000 0.00 0.00 35.16 4.45
15 16 0.179076 TGCACGGTCATAGATGCTGG 60.179 55.000 0.00 0.00 38.90 4.85
16 17 1.328680 GTTGCACGGTCATAGATGCTG 59.671 52.381 0.00 0.00 38.90 4.41
17 18 1.656652 GTTGCACGGTCATAGATGCT 58.343 50.000 0.00 0.00 38.90 3.79
18 19 0.657840 GGTTGCACGGTCATAGATGC 59.342 55.000 0.00 0.00 38.59 3.91
19 20 0.930310 CGGTTGCACGGTCATAGATG 59.070 55.000 0.00 0.00 0.00 2.90
20 21 0.810031 GCGGTTGCACGGTCATAGAT 60.810 55.000 0.00 0.00 42.15 1.98
21 22 1.447140 GCGGTTGCACGGTCATAGA 60.447 57.895 0.00 0.00 42.15 1.98
22 23 1.019278 AAGCGGTTGCACGGTCATAG 61.019 55.000 0.00 0.00 44.60 2.23
23 24 0.246910 TAAGCGGTTGCACGGTCATA 59.753 50.000 10.73 0.00 44.60 2.15
24 25 1.004320 TAAGCGGTTGCACGGTCAT 60.004 52.632 10.73 0.00 44.60 3.06
25 26 1.957186 GTAAGCGGTTGCACGGTCA 60.957 57.895 10.73 0.00 44.60 4.02
26 27 1.897398 CTGTAAGCGGTTGCACGGTC 61.897 60.000 14.24 0.00 44.60 4.79
28 29 1.626654 CTCTGTAAGCGGTTGCACGG 61.627 60.000 14.24 8.30 46.23 4.94
29 30 1.626654 CCTCTGTAAGCGGTTGCACG 61.627 60.000 14.24 10.53 46.23 5.34
30 31 2.162716 CCTCTGTAAGCGGTTGCAC 58.837 57.895 14.24 3.62 46.23 4.57
31 32 4.693532 CCTCTGTAAGCGGTTGCA 57.306 55.556 17.09 17.09 46.23 4.08
36 37 1.218316 GGGACACCTCTGTAAGCGG 59.782 63.158 0.00 0.00 46.67 5.52
37 38 1.972198 TGGGACACCTCTGTAAGCG 59.028 57.895 0.00 0.00 37.76 4.68
51 52 1.611977 CGCATAGTCCGACTTATGGGA 59.388 52.381 19.25 0.78 35.66 4.37
52 53 1.935300 GCGCATAGTCCGACTTATGGG 60.935 57.143 6.31 15.40 36.39 4.00
53 54 1.419374 GCGCATAGTCCGACTTATGG 58.581 55.000 6.31 4.87 0.00 2.74
54 55 1.419374 GGCGCATAGTCCGACTTATG 58.581 55.000 10.83 9.38 0.00 1.90
55 56 0.317479 GGGCGCATAGTCCGACTTAT 59.683 55.000 10.83 0.00 33.32 1.73
56 57 1.737816 GGGCGCATAGTCCGACTTA 59.262 57.895 10.83 0.00 33.32 2.24
57 58 2.499685 GGGCGCATAGTCCGACTT 59.500 61.111 10.83 0.00 33.32 3.01
63 64 0.679505 TAGATGGTGGGCGCATAGTC 59.320 55.000 10.83 5.48 0.00 2.59
64 65 0.393077 GTAGATGGTGGGCGCATAGT 59.607 55.000 10.83 0.00 0.00 2.12
65 66 0.667487 CGTAGATGGTGGGCGCATAG 60.667 60.000 10.83 0.00 0.00 2.23
66 67 1.110518 TCGTAGATGGTGGGCGCATA 61.111 55.000 10.83 0.00 0.00 3.14
67 68 2.108976 CGTAGATGGTGGGCGCAT 59.891 61.111 10.83 0.00 0.00 4.73
68 69 3.071837 TCGTAGATGGTGGGCGCA 61.072 61.111 10.83 0.00 0.00 6.09
69 70 2.279517 CTCGTAGATGGTGGGCGC 60.280 66.667 0.00 0.00 33.89 6.53
70 71 2.279517 GCTCGTAGATGGTGGGCG 60.280 66.667 0.00 0.00 33.89 6.13
71 72 2.279517 CGCTCGTAGATGGTGGGC 60.280 66.667 0.00 0.00 33.89 5.36
72 73 2.279517 GCGCTCGTAGATGGTGGG 60.280 66.667 0.00 0.00 33.89 4.61
73 74 2.655364 CGCGCTCGTAGATGGTGG 60.655 66.667 5.56 0.00 33.89 4.61
74 75 3.323136 GCGCGCTCGTAGATGGTG 61.323 66.667 26.67 0.00 38.14 4.17
75 76 3.822192 TGCGCGCTCGTAGATGGT 61.822 61.111 33.29 0.00 38.14 3.55
88 89 3.117171 CTCTGTCAGTGGCTGCGC 61.117 66.667 0.00 0.00 0.00 6.09
89 90 2.433838 CCTCTGTCAGTGGCTGCG 60.434 66.667 7.99 0.00 0.00 5.18
90 91 1.670406 CACCTCTGTCAGTGGCTGC 60.670 63.158 18.85 0.00 32.28 5.25
91 92 0.320247 GACACCTCTGTCAGTGGCTG 60.320 60.000 18.85 17.08 45.57 4.85
92 93 2.053618 GACACCTCTGTCAGTGGCT 58.946 57.895 18.85 6.21 45.57 4.75
93 94 4.683432 GACACCTCTGTCAGTGGC 57.317 61.111 18.85 0.90 45.57 5.01
107 108 4.126437 CGCATATACTGATTTGTGGGACA 58.874 43.478 0.00 0.00 0.00 4.02
108 109 3.058914 GCGCATATACTGATTTGTGGGAC 60.059 47.826 0.30 0.00 0.00 4.46
109 110 3.138304 GCGCATATACTGATTTGTGGGA 58.862 45.455 0.30 0.00 0.00 4.37
110 111 2.226437 GGCGCATATACTGATTTGTGGG 59.774 50.000 10.83 0.00 0.00 4.61
111 112 2.226437 GGGCGCATATACTGATTTGTGG 59.774 50.000 10.83 0.00 0.00 4.17
112 113 2.877786 TGGGCGCATATACTGATTTGTG 59.122 45.455 10.83 0.00 0.00 3.33
113 114 2.878406 GTGGGCGCATATACTGATTTGT 59.122 45.455 10.83 0.00 0.00 2.83
114 115 2.226437 GGTGGGCGCATATACTGATTTG 59.774 50.000 10.83 0.00 0.00 2.32
115 116 2.158682 TGGTGGGCGCATATACTGATTT 60.159 45.455 10.83 0.00 0.00 2.17
116 117 1.419762 TGGTGGGCGCATATACTGATT 59.580 47.619 10.83 0.00 0.00 2.57
117 118 1.055849 TGGTGGGCGCATATACTGAT 58.944 50.000 10.83 0.00 0.00 2.90
118 119 1.001974 GATGGTGGGCGCATATACTGA 59.998 52.381 10.83 0.00 0.00 3.41
119 120 1.002430 AGATGGTGGGCGCATATACTG 59.998 52.381 10.83 0.00 0.00 2.74
120 121 1.352083 AGATGGTGGGCGCATATACT 58.648 50.000 10.83 2.32 0.00 2.12
121 122 2.618053 GTAGATGGTGGGCGCATATAC 58.382 52.381 10.83 1.36 0.00 1.47
122 123 1.203758 CGTAGATGGTGGGCGCATATA 59.796 52.381 10.83 0.00 0.00 0.86
123 124 0.037326 CGTAGATGGTGGGCGCATAT 60.037 55.000 10.83 4.90 0.00 1.78
124 125 1.365999 CGTAGATGGTGGGCGCATA 59.634 57.895 10.83 0.00 0.00 3.14
125 126 2.108976 CGTAGATGGTGGGCGCAT 59.891 61.111 10.83 0.00 0.00 4.73
126 127 4.155733 CCGTAGATGGTGGGCGCA 62.156 66.667 10.83 0.00 0.00 6.09
127 128 4.910585 CCCGTAGATGGTGGGCGC 62.911 72.222 0.00 0.00 35.82 6.53
132 133 4.910585 GCCCGCCCGTAGATGGTG 62.911 72.222 0.00 0.00 0.00 4.17
134 135 4.609018 CTGCCCGCCCGTAGATGG 62.609 72.222 0.00 0.00 0.00 3.51
165 166 0.391597 GGTTTCTGACTCGTGGGACA 59.608 55.000 0.00 0.00 0.00 4.02
166 167 0.391597 TGGTTTCTGACTCGTGGGAC 59.608 55.000 0.00 0.00 0.00 4.46
167 168 0.391597 GTGGTTTCTGACTCGTGGGA 59.608 55.000 0.00 0.00 0.00 4.37
168 169 0.944311 CGTGGTTTCTGACTCGTGGG 60.944 60.000 0.00 0.00 0.00 4.61
169 170 1.557443 GCGTGGTTTCTGACTCGTGG 61.557 60.000 0.00 0.00 0.00 4.94
170 171 1.557443 GGCGTGGTTTCTGACTCGTG 61.557 60.000 0.00 0.00 0.00 4.35
171 172 1.300697 GGCGTGGTTTCTGACTCGT 60.301 57.895 0.00 0.00 0.00 4.18
172 173 2.027625 GGGCGTGGTTTCTGACTCG 61.028 63.158 0.00 0.00 0.00 4.18
173 174 0.951040 CTGGGCGTGGTTTCTGACTC 60.951 60.000 0.00 0.00 0.00 3.36
174 175 1.071471 CTGGGCGTGGTTTCTGACT 59.929 57.895 0.00 0.00 0.00 3.41
175 176 0.034337 TACTGGGCGTGGTTTCTGAC 59.966 55.000 0.00 0.00 0.00 3.51
176 177 0.759959 TTACTGGGCGTGGTTTCTGA 59.240 50.000 0.00 0.00 0.00 3.27
177 178 0.872388 GTTACTGGGCGTGGTTTCTG 59.128 55.000 0.00 0.00 0.00 3.02
178 179 0.601841 CGTTACTGGGCGTGGTTTCT 60.602 55.000 0.00 0.00 0.00 2.52
179 180 1.571215 CCGTTACTGGGCGTGGTTTC 61.571 60.000 0.00 0.00 0.00 2.78
180 181 1.598685 CCGTTACTGGGCGTGGTTT 60.599 57.895 0.00 0.00 0.00 3.27
181 182 2.031465 CCGTTACTGGGCGTGGTT 59.969 61.111 0.00 0.00 0.00 3.67
182 183 3.230522 GACCGTTACTGGGCGTGGT 62.231 63.158 0.00 0.00 0.00 4.16
183 184 2.433664 GACCGTTACTGGGCGTGG 60.434 66.667 0.00 0.00 0.00 4.94
184 185 0.881159 TTTGACCGTTACTGGGCGTG 60.881 55.000 0.00 0.00 41.34 5.34
185 186 0.601841 CTTTGACCGTTACTGGGCGT 60.602 55.000 0.00 0.00 41.34 5.68
186 187 1.908066 GCTTTGACCGTTACTGGGCG 61.908 60.000 0.00 0.00 41.34 6.13
187 188 1.583495 GGCTTTGACCGTTACTGGGC 61.583 60.000 0.00 0.00 37.64 5.36
188 189 0.036306 AGGCTTTGACCGTTACTGGG 59.964 55.000 0.00 0.00 33.69 4.45
189 190 1.892209 AAGGCTTTGACCGTTACTGG 58.108 50.000 0.00 0.00 33.69 4.00
190 191 2.875933 TCAAAGGCTTTGACCGTTACTG 59.124 45.455 32.85 9.90 44.21 2.74
191 192 3.202829 TCAAAGGCTTTGACCGTTACT 57.797 42.857 32.85 0.00 44.21 2.24
199 200 1.497991 CGTCGAGTCAAAGGCTTTGA 58.502 50.000 32.85 32.85 46.68 2.69
200 201 0.110644 GCGTCGAGTCAAAGGCTTTG 60.111 55.000 29.60 29.60 41.96 2.77
201 202 1.228657 GGCGTCGAGTCAAAGGCTTT 61.229 55.000 6.68 6.68 0.00 3.51
202 203 1.668151 GGCGTCGAGTCAAAGGCTT 60.668 57.895 0.00 0.00 0.00 4.35
203 204 2.048127 GGCGTCGAGTCAAAGGCT 60.048 61.111 0.00 0.00 0.00 4.58
204 205 1.959226 TTGGCGTCGAGTCAAAGGC 60.959 57.895 0.00 0.00 42.17 4.35
205 206 4.354155 TTGGCGTCGAGTCAAAGG 57.646 55.556 0.00 0.00 42.17 3.11
208 209 1.595929 GGGTTTGGCGTCGAGTCAA 60.596 57.895 0.00 0.00 43.63 3.18
209 210 2.029964 GGGTTTGGCGTCGAGTCA 59.970 61.111 0.00 0.00 0.00 3.41
210 211 2.741211 GGGGTTTGGCGTCGAGTC 60.741 66.667 0.00 0.00 0.00 3.36
211 212 4.675029 CGGGGTTTGGCGTCGAGT 62.675 66.667 0.00 0.00 0.00 4.18
212 213 4.675029 ACGGGGTTTGGCGTCGAG 62.675 66.667 0.00 0.00 0.00 4.04
213 214 3.753806 AAACGGGGTTTGGCGTCGA 62.754 57.895 0.00 0.00 34.23 4.20
214 215 3.281395 AAACGGGGTTTGGCGTCG 61.281 61.111 0.00 0.00 34.23 5.12
215 216 2.333581 CAAACGGGGTTTGGCGTC 59.666 61.111 12.23 0.00 46.10 5.19
227 228 3.737172 CTTGCCCGAGCCCAAACG 61.737 66.667 0.00 0.00 38.69 3.60
228 229 3.373565 CCTTGCCCGAGCCCAAAC 61.374 66.667 0.00 0.00 38.69 2.93
229 230 4.676951 CCCTTGCCCGAGCCCAAA 62.677 66.667 0.00 0.00 38.69 3.28
252 253 3.190738 TTTCCCCCTCCACTGTGCG 62.191 63.158 1.29 0.00 0.00 5.34
253 254 1.303643 CTTTCCCCCTCCACTGTGC 60.304 63.158 1.29 0.00 0.00 4.57
254 255 0.250901 CACTTTCCCCCTCCACTGTG 60.251 60.000 0.00 0.00 0.00 3.66
255 256 0.401395 TCACTTTCCCCCTCCACTGT 60.401 55.000 0.00 0.00 0.00 3.55
256 257 0.326264 CTCACTTTCCCCCTCCACTG 59.674 60.000 0.00 0.00 0.00 3.66
257 258 0.842467 CCTCACTTTCCCCCTCCACT 60.842 60.000 0.00 0.00 0.00 4.00
258 259 0.840722 TCCTCACTTTCCCCCTCCAC 60.841 60.000 0.00 0.00 0.00 4.02
259 260 0.840722 GTCCTCACTTTCCCCCTCCA 60.841 60.000 0.00 0.00 0.00 3.86
260 261 0.547954 AGTCCTCACTTTCCCCCTCC 60.548 60.000 0.00 0.00 0.00 4.30
261 262 0.615850 CAGTCCTCACTTTCCCCCTC 59.384 60.000 0.00 0.00 0.00 4.30
262 263 0.842467 CCAGTCCTCACTTTCCCCCT 60.842 60.000 0.00 0.00 0.00 4.79
263 264 1.685820 CCAGTCCTCACTTTCCCCC 59.314 63.158 0.00 0.00 0.00 5.40
264 265 1.002011 GCCAGTCCTCACTTTCCCC 60.002 63.158 0.00 0.00 0.00 4.81
265 266 0.402121 AAGCCAGTCCTCACTTTCCC 59.598 55.000 0.00 0.00 0.00 3.97
266 267 2.303311 ACTAAGCCAGTCCTCACTTTCC 59.697 50.000 0.00 0.00 28.33 3.13
267 268 3.330267 CACTAAGCCAGTCCTCACTTTC 58.670 50.000 0.00 0.00 34.26 2.62
268 269 2.551071 GCACTAAGCCAGTCCTCACTTT 60.551 50.000 0.00 0.00 34.26 2.66
269 270 1.002544 GCACTAAGCCAGTCCTCACTT 59.997 52.381 0.00 0.00 34.26 3.16
270 271 0.610687 GCACTAAGCCAGTCCTCACT 59.389 55.000 0.00 0.00 34.26 3.41
271 272 0.737715 CGCACTAAGCCAGTCCTCAC 60.738 60.000 0.00 0.00 41.38 3.51
272 273 1.591703 CGCACTAAGCCAGTCCTCA 59.408 57.895 0.00 0.00 41.38 3.86
273 274 1.811679 GCGCACTAAGCCAGTCCTC 60.812 63.158 0.30 0.00 41.38 3.71
274 275 2.266055 GCGCACTAAGCCAGTCCT 59.734 61.111 0.30 0.00 41.38 3.85
275 276 3.188786 CGCGCACTAAGCCAGTCC 61.189 66.667 8.75 0.00 41.38 3.85
276 277 3.188786 CCGCGCACTAAGCCAGTC 61.189 66.667 8.75 0.00 41.38 3.51
277 278 4.760047 CCCGCGCACTAAGCCAGT 62.760 66.667 8.75 0.00 41.38 4.00
287 288 3.659092 CTCAGTTTTGCCCGCGCA 61.659 61.111 8.75 0.00 45.49 6.09
288 289 4.404654 CCTCAGTTTTGCCCGCGC 62.405 66.667 0.00 0.00 0.00 6.86
289 290 2.668212 TCCTCAGTTTTGCCCGCG 60.668 61.111 0.00 0.00 0.00 6.46
290 291 2.335712 CCTCCTCAGTTTTGCCCGC 61.336 63.158 0.00 0.00 0.00 6.13
291 292 0.955919 GTCCTCCTCAGTTTTGCCCG 60.956 60.000 0.00 0.00 0.00 6.13
292 293 0.402121 AGTCCTCCTCAGTTTTGCCC 59.598 55.000 0.00 0.00 0.00 5.36
293 294 3.339141 CTTAGTCCTCCTCAGTTTTGCC 58.661 50.000 0.00 0.00 0.00 4.52
294 295 2.744741 GCTTAGTCCTCCTCAGTTTTGC 59.255 50.000 0.00 0.00 0.00 3.68
295 296 2.996621 CGCTTAGTCCTCCTCAGTTTTG 59.003 50.000 0.00 0.00 0.00 2.44
296 297 2.897969 TCGCTTAGTCCTCCTCAGTTTT 59.102 45.455 0.00 0.00 0.00 2.43
297 298 2.526432 TCGCTTAGTCCTCCTCAGTTT 58.474 47.619 0.00 0.00 0.00 2.66
298 299 2.217510 TCGCTTAGTCCTCCTCAGTT 57.782 50.000 0.00 0.00 0.00 3.16
299 300 2.096248 CTTCGCTTAGTCCTCCTCAGT 58.904 52.381 0.00 0.00 0.00 3.41
300 301 2.357637 CTCTTCGCTTAGTCCTCCTCAG 59.642 54.545 0.00 0.00 0.00 3.35
301 302 2.370349 CTCTTCGCTTAGTCCTCCTCA 58.630 52.381 0.00 0.00 0.00 3.86
302 303 1.679153 CCTCTTCGCTTAGTCCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
303 304 1.686741 CCCTCTTCGCTTAGTCCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
304 305 0.747852 CCCTCTTCGCTTAGTCCTCC 59.252 60.000 0.00 0.00 0.00 4.30
305 306 1.406180 GTCCCTCTTCGCTTAGTCCTC 59.594 57.143 0.00 0.00 0.00 3.71
306 307 1.272536 TGTCCCTCTTCGCTTAGTCCT 60.273 52.381 0.00 0.00 0.00 3.85
307 308 1.135053 GTGTCCCTCTTCGCTTAGTCC 60.135 57.143 0.00 0.00 0.00 3.85
308 309 1.544691 TGTGTCCCTCTTCGCTTAGTC 59.455 52.381 0.00 0.00 0.00 2.59
309 310 1.546476 CTGTGTCCCTCTTCGCTTAGT 59.454 52.381 0.00 0.00 0.00 2.24
310 311 1.819288 TCTGTGTCCCTCTTCGCTTAG 59.181 52.381 0.00 0.00 0.00 2.18
311 312 1.919240 TCTGTGTCCCTCTTCGCTTA 58.081 50.000 0.00 0.00 0.00 3.09
312 313 1.048601 TTCTGTGTCCCTCTTCGCTT 58.951 50.000 0.00 0.00 0.00 4.68
313 314 1.048601 TTTCTGTGTCCCTCTTCGCT 58.951 50.000 0.00 0.00 0.00 4.93
314 315 2.100605 ATTTCTGTGTCCCTCTTCGC 57.899 50.000 0.00 0.00 0.00 4.70
315 316 4.720649 TCTATTTCTGTGTCCCTCTTCG 57.279 45.455 0.00 0.00 0.00 3.79
316 317 6.540551 GGATTTCTATTTCTGTGTCCCTCTTC 59.459 42.308 0.00 0.00 0.00 2.87
317 318 6.418946 GGATTTCTATTTCTGTGTCCCTCTT 58.581 40.000 0.00 0.00 0.00 2.85
318 319 5.104318 GGGATTTCTATTTCTGTGTCCCTCT 60.104 44.000 0.00 0.00 40.67 3.69
319 320 5.126779 GGGATTTCTATTTCTGTGTCCCTC 58.873 45.833 0.00 0.00 40.67 4.30
320 321 4.540099 TGGGATTTCTATTTCTGTGTCCCT 59.460 41.667 8.42 0.00 43.52 4.20
321 322 4.855340 TGGGATTTCTATTTCTGTGTCCC 58.145 43.478 0.00 0.00 43.44 4.46
322 323 7.410120 AAATGGGATTTCTATTTCTGTGTCC 57.590 36.000 0.00 0.00 0.00 4.02
357 358 9.956720 GATAGTTGATAATGTGCAAGCTTAATT 57.043 29.630 0.00 0.00 0.00 1.40
358 359 9.123902 TGATAGTTGATAATGTGCAAGCTTAAT 57.876 29.630 0.00 0.00 0.00 1.40
359 360 8.504812 TGATAGTTGATAATGTGCAAGCTTAA 57.495 30.769 0.00 0.00 0.00 1.85
360 361 8.397906 GTTGATAGTTGATAATGTGCAAGCTTA 58.602 33.333 0.00 0.00 0.00 3.09
361 362 7.121759 AGTTGATAGTTGATAATGTGCAAGCTT 59.878 33.333 0.00 0.00 0.00 3.74
362 363 6.600822 AGTTGATAGTTGATAATGTGCAAGCT 59.399 34.615 0.00 0.00 0.00 3.74
363 364 6.789262 AGTTGATAGTTGATAATGTGCAAGC 58.211 36.000 0.00 0.00 0.00 4.01
364 365 7.121911 CGAGTTGATAGTTGATAATGTGCAAG 58.878 38.462 0.00 0.00 0.00 4.01
365 366 6.456853 GCGAGTTGATAGTTGATAATGTGCAA 60.457 38.462 0.00 0.00 0.00 4.08
366 367 5.006649 GCGAGTTGATAGTTGATAATGTGCA 59.993 40.000 0.00 0.00 0.00 4.57
367 368 5.235186 AGCGAGTTGATAGTTGATAATGTGC 59.765 40.000 0.00 0.00 0.00 4.57
368 369 6.834959 AGCGAGTTGATAGTTGATAATGTG 57.165 37.500 0.00 0.00 0.00 3.21
369 370 7.438459 GGTAAGCGAGTTGATAGTTGATAATGT 59.562 37.037 0.00 0.00 0.00 2.71
370 371 7.438160 TGGTAAGCGAGTTGATAGTTGATAATG 59.562 37.037 0.00 0.00 0.00 1.90
371 372 7.497595 TGGTAAGCGAGTTGATAGTTGATAAT 58.502 34.615 0.00 0.00 0.00 1.28
372 373 6.869695 TGGTAAGCGAGTTGATAGTTGATAA 58.130 36.000 0.00 0.00 0.00 1.75
373 374 6.459670 TGGTAAGCGAGTTGATAGTTGATA 57.540 37.500 0.00 0.00 0.00 2.15
374 375 5.339008 TGGTAAGCGAGTTGATAGTTGAT 57.661 39.130 0.00 0.00 0.00 2.57
375 376 4.794278 TGGTAAGCGAGTTGATAGTTGA 57.206 40.909 0.00 0.00 0.00 3.18
376 377 5.351465 ACAATGGTAAGCGAGTTGATAGTTG 59.649 40.000 0.00 0.00 0.00 3.16
377 378 5.488341 ACAATGGTAAGCGAGTTGATAGTT 58.512 37.500 0.00 0.00 0.00 2.24
378 379 5.086104 ACAATGGTAAGCGAGTTGATAGT 57.914 39.130 0.00 0.00 0.00 2.12
379 380 5.352284 AGACAATGGTAAGCGAGTTGATAG 58.648 41.667 0.00 0.00 0.00 2.08
380 381 5.339008 AGACAATGGTAAGCGAGTTGATA 57.661 39.130 0.00 0.00 0.00 2.15
381 382 4.207891 AGACAATGGTAAGCGAGTTGAT 57.792 40.909 0.00 0.00 0.00 2.57
382 383 3.678056 AGACAATGGTAAGCGAGTTGA 57.322 42.857 0.00 0.00 0.00 3.18
383 384 3.997021 AGAAGACAATGGTAAGCGAGTTG 59.003 43.478 0.00 0.00 0.00 3.16
384 385 4.273148 AGAAGACAATGGTAAGCGAGTT 57.727 40.909 0.00 0.00 0.00 3.01
385 386 3.963428 AGAAGACAATGGTAAGCGAGT 57.037 42.857 0.00 0.00 0.00 4.18
386 387 5.409826 AGAAAAGAAGACAATGGTAAGCGAG 59.590 40.000 0.00 0.00 0.00 5.03
387 388 5.305585 AGAAAAGAAGACAATGGTAAGCGA 58.694 37.500 0.00 0.00 0.00 4.93
388 389 5.613358 AGAAAAGAAGACAATGGTAAGCG 57.387 39.130 0.00 0.00 0.00 4.68
389 390 9.914131 ATAAAAGAAAAGAAGACAATGGTAAGC 57.086 29.630 0.00 0.00 0.00 3.09
416 417 9.836864 TGTCTGTGACTGCATTATATTTCTTAT 57.163 29.630 0.00 0.00 33.15 1.73
417 418 9.836864 ATGTCTGTGACTGCATTATATTTCTTA 57.163 29.630 0.00 0.00 33.15 2.10
418 419 8.618677 CATGTCTGTGACTGCATTATATTTCTT 58.381 33.333 0.00 0.00 33.15 2.52
419 420 7.228108 CCATGTCTGTGACTGCATTATATTTCT 59.772 37.037 0.00 0.00 33.15 2.52
420 421 7.358066 CCATGTCTGTGACTGCATTATATTTC 58.642 38.462 0.00 0.00 33.15 2.17
421 422 6.263842 CCCATGTCTGTGACTGCATTATATTT 59.736 38.462 0.00 0.00 33.15 1.40
422 423 5.766670 CCCATGTCTGTGACTGCATTATATT 59.233 40.000 0.00 0.00 33.15 1.28
423 424 5.311265 CCCATGTCTGTGACTGCATTATAT 58.689 41.667 0.00 0.00 33.15 0.86
424 425 4.707105 CCCATGTCTGTGACTGCATTATA 58.293 43.478 0.00 0.00 33.15 0.98
425 426 3.548770 CCCATGTCTGTGACTGCATTAT 58.451 45.455 0.00 0.00 33.15 1.28
426 427 2.940971 GCCCATGTCTGTGACTGCATTA 60.941 50.000 0.00 0.00 33.15 1.90
427 428 1.830279 CCCATGTCTGTGACTGCATT 58.170 50.000 0.00 0.00 33.15 3.56
428 429 0.679002 GCCCATGTCTGTGACTGCAT 60.679 55.000 0.00 0.00 33.15 3.96
429 430 1.302752 GCCCATGTCTGTGACTGCA 60.303 57.895 0.00 0.00 33.15 4.41
430 431 0.607489 AAGCCCATGTCTGTGACTGC 60.607 55.000 0.00 0.00 33.15 4.40
431 432 1.271001 TGAAGCCCATGTCTGTGACTG 60.271 52.381 0.00 0.00 33.15 3.51
432 433 1.059098 TGAAGCCCATGTCTGTGACT 58.941 50.000 0.00 0.00 33.15 3.41
433 434 1.160137 GTGAAGCCCATGTCTGTGAC 58.840 55.000 0.00 0.00 0.00 3.67
434 435 0.320683 CGTGAAGCCCATGTCTGTGA 60.321 55.000 0.00 0.00 0.00 3.58
435 436 0.320683 TCGTGAAGCCCATGTCTGTG 60.321 55.000 0.00 0.00 33.53 3.66
436 437 0.320771 GTCGTGAAGCCCATGTCTGT 60.321 55.000 0.00 0.00 33.53 3.41
437 438 1.354337 CGTCGTGAAGCCCATGTCTG 61.354 60.000 0.00 0.00 33.53 3.51
438 439 1.079819 CGTCGTGAAGCCCATGTCT 60.080 57.895 0.00 0.00 33.53 3.41
439 440 2.100631 CCGTCGTGAAGCCCATGTC 61.101 63.158 0.00 0.00 33.53 3.06
440 441 2.047274 CCGTCGTGAAGCCCATGT 60.047 61.111 0.00 0.00 33.53 3.21
441 442 3.499737 GCCGTCGTGAAGCCCATG 61.500 66.667 0.00 0.00 0.00 3.66
442 443 4.015406 TGCCGTCGTGAAGCCCAT 62.015 61.111 0.00 0.00 0.00 4.00
443 444 4.980805 GTGCCGTCGTGAAGCCCA 62.981 66.667 0.00 0.00 0.00 5.36
514 516 9.678941 GAAACAGAAATTCTTAATCGGTTTTCT 57.321 29.630 7.85 0.00 40.08 2.52
561 563 3.886123 AGCGGTGTAGGCAAAGAAATAT 58.114 40.909 0.00 0.00 0.00 1.28
563 565 2.200373 AGCGGTGTAGGCAAAGAAAT 57.800 45.000 0.00 0.00 0.00 2.17
692 694 3.006217 GGGACACGTATATAGGTTCCCAC 59.994 52.174 28.44 15.75 39.05 4.61
696 698 4.147321 TCTGGGGACACGTATATAGGTTC 58.853 47.826 5.34 7.12 35.60 3.62
763 765 0.178995 TCTTTCAGGTGTGCATGCCA 60.179 50.000 16.68 10.08 0.00 4.92
800 802 1.538047 TCATTGCTGGAGTGCTTTCC 58.462 50.000 0.65 0.65 37.77 3.13
810 812 4.581824 ACTTATTACTGCCATCATTGCTGG 59.418 41.667 2.05 2.05 36.81 4.85
814 816 5.106948 CGGCTACTTATTACTGCCATCATTG 60.107 44.000 0.00 0.00 43.38 2.82
1111 1128 0.705253 TCGAGGGAGAAGAAGGTCCT 59.295 55.000 0.00 0.00 32.90 3.85
1161 1178 3.640407 GCCACCAGGAGCACCAGA 61.640 66.667 2.07 0.00 38.94 3.86
1199 1216 0.526211 CGCCTGCAGTAGACTGTACA 59.474 55.000 13.81 0.00 45.45 2.90
1272 1289 4.021925 GACCAGGCGAGCACCCTT 62.022 66.667 0.00 0.00 0.00 3.95
1544 1561 3.442100 GTTGCGCCGTTTCTAGTACTAT 58.558 45.455 4.18 0.00 0.00 2.12
1561 1578 4.644103 TTCTATCCTAGTACCACGTTGC 57.356 45.455 0.00 0.00 0.00 4.17
1632 1649 4.023980 AGATTCACCGATCCACTCTACAA 58.976 43.478 0.00 0.00 0.00 2.41
1726 1756 3.007290 CACCAAGATCTGAAGTCCTGACA 59.993 47.826 0.00 0.00 0.00 3.58
1729 1759 3.692257 ACACCAAGATCTGAAGTCCTG 57.308 47.619 0.00 0.00 0.00 3.86
1805 1835 5.065218 CCTTTCACATATACACCAGCTTCAC 59.935 44.000 0.00 0.00 0.00 3.18
1951 1981 7.534085 TCCTATCAATGAAACGATACACAAC 57.466 36.000 0.00 0.00 0.00 3.32
1961 1991 9.617975 CAACTCTCTTTTTCCTATCAATGAAAC 57.382 33.333 0.00 0.00 30.64 2.78
1987 2017 4.161333 GACATGCAACAATGTAACTCTGC 58.839 43.478 0.00 0.45 40.87 4.26
1988 2018 4.216042 TGGACATGCAACAATGTAACTCTG 59.784 41.667 0.00 0.00 40.87 3.35
1989 2019 4.397420 TGGACATGCAACAATGTAACTCT 58.603 39.130 0.00 0.00 40.87 3.24
1990 2020 4.764679 TGGACATGCAACAATGTAACTC 57.235 40.909 0.00 0.00 40.87 3.01
1991 2021 5.068987 AGTTTGGACATGCAACAATGTAACT 59.931 36.000 0.00 0.00 40.87 2.24
1992 2022 5.288804 AGTTTGGACATGCAACAATGTAAC 58.711 37.500 0.00 0.00 40.87 2.50
1993 2023 5.528043 AGTTTGGACATGCAACAATGTAA 57.472 34.783 0.00 0.00 40.87 2.41
1994 2024 5.532779 TGTAGTTTGGACATGCAACAATGTA 59.467 36.000 0.00 0.00 40.87 2.29
2045 2083 1.635487 TCCCCTTCTTCCTGTTCATGG 59.365 52.381 0.00 0.00 0.00 3.66
2051 2089 0.915364 GAGCATCCCCTTCTTCCTGT 59.085 55.000 0.00 0.00 0.00 4.00
2093 2131 5.184287 GGACTTAGCCTTATCCTGCTAGTAG 59.816 48.000 0.00 0.00 40.85 2.57
2098 2136 3.053359 AGGACTTAGCCTTATCCTGCT 57.947 47.619 0.00 0.00 40.18 4.24
2142 2443 2.490270 GATGGCCTCACACCCAGCTT 62.490 60.000 3.32 0.00 34.78 3.74
2147 2448 1.450312 CTTCGATGGCCTCACACCC 60.450 63.158 3.32 0.00 0.00 4.61
2187 2488 5.647658 TCAATCTCACTGCGTGGAATATTTT 59.352 36.000 8.46 0.00 33.87 1.82
2206 2507 2.395654 GCCTTAGGTCGATCGTCAATC 58.604 52.381 15.94 0.00 0.00 2.67
2208 2509 0.458669 GGCCTTAGGTCGATCGTCAA 59.541 55.000 15.94 4.38 0.00 3.18
2303 2604 0.390472 GAGGTTCTCTCTTGGTGCCG 60.390 60.000 0.00 0.00 39.38 5.69
2332 2633 1.404717 GCAAGAGCTGGAGACGATTGA 60.405 52.381 0.00 0.00 37.91 2.57
2335 2636 1.140589 CGCAAGAGCTGGAGACGAT 59.859 57.895 0.00 0.00 43.02 3.73
2413 2714 3.423539 TGCCAACTAGAGTCATTGCTT 57.576 42.857 0.00 0.00 0.00 3.91
2439 2740 5.535030 ACCACTTGGAGTTAAATTCTTCCAC 59.465 40.000 1.14 0.00 38.94 4.02
2440 2741 5.701224 ACCACTTGGAGTTAAATTCTTCCA 58.299 37.500 1.14 0.00 38.94 3.53
2553 2854 1.120530 AGTTGGAAGTGACGGACAGT 58.879 50.000 0.00 0.00 0.00 3.55
2554 2855 1.068588 TCAGTTGGAAGTGACGGACAG 59.931 52.381 0.00 0.00 33.62 3.51
2555 2856 1.116308 TCAGTTGGAAGTGACGGACA 58.884 50.000 0.00 0.00 33.62 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.