Multiple sequence alignment - TraesCS5B01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G104800 chr5B 100.000 5348 0 0 1 5348 140729683 140735030 0.000000e+00 9877.0
1 TraesCS5B01G104800 chr5B 94.764 191 6 4 1 188 322256840 322256651 1.460000e-75 294.0
2 TraesCS5B01G104800 chr5B 93.617 188 8 3 1 185 206764190 206764376 1.470000e-70 278.0
3 TraesCS5B01G104800 chr5B 92.308 65 3 1 4965 5029 322144332 322144394 2.050000e-14 91.6
4 TraesCS5B01G104800 chr5D 92.842 4317 196 41 596 4870 127253837 127258082 0.000000e+00 6156.0
5 TraesCS5B01G104800 chr5D 94.144 444 16 6 4909 5348 127258252 127258689 0.000000e+00 667.0
6 TraesCS5B01G104800 chr5D 94.709 189 6 4 1 185 36341673 36341485 1.880000e-74 291.0
7 TraesCS5B01G104800 chr5D 94.652 187 8 2 1 185 512839427 512839241 6.780000e-74 289.0
8 TraesCS5B01G104800 chr5A 92.415 2004 109 20 1299 3289 142840427 142842400 0.000000e+00 2819.0
9 TraesCS5B01G104800 chr5A 90.329 941 50 22 3929 4867 142843120 142844021 0.000000e+00 1195.0
10 TraesCS5B01G104800 chr5A 94.499 509 24 3 794 1300 142839807 142840313 0.000000e+00 782.0
11 TraesCS5B01G104800 chr5A 95.638 298 10 2 5051 5348 142845476 142845770 4.850000e-130 475.0
12 TraesCS5B01G104800 chr5A 83.333 540 59 18 1135 1653 668394195 668393666 2.250000e-128 470.0
13 TraesCS5B01G104800 chr5A 83.241 543 59 20 1132 1653 701406979 701407510 2.250000e-128 470.0
14 TraesCS5B01G104800 chr5A 89.973 369 24 3 3272 3627 142842752 142843120 1.050000e-126 464.0
15 TraesCS5B01G104800 chr5A 95.862 145 6 0 596 740 142839653 142839797 8.950000e-58 235.0
16 TraesCS5B01G104800 chr5A 88.344 163 10 2 4909 5067 142844179 142844336 2.540000e-43 187.0
17 TraesCS5B01G104800 chr6B 85.926 540 46 17 1135 1653 14170932 14170402 2.820000e-152 549.0
18 TraesCS5B01G104800 chr2B 86.059 538 43 18 1137 1653 735908066 735908592 2.820000e-152 549.0
19 TraesCS5B01G104800 chr2A 84.473 541 54 17 1132 1653 730076649 730077178 1.720000e-139 507.0
20 TraesCS5B01G104800 chr2A 83.948 542 58 18 1132 1653 593474234 593474766 4.810000e-135 492.0
21 TraesCS5B01G104800 chr2A 92.806 278 20 0 314 591 16370234 16370511 2.320000e-108 403.0
22 TraesCS5B01G104800 chr3A 84.230 539 53 19 1136 1653 451510901 451510374 3.720000e-136 496.0
23 TraesCS5B01G104800 chr4A 83.610 543 57 18 1132 1653 642849603 642850134 1.040000e-131 481.0
24 TraesCS5B01G104800 chrUn 83.148 540 58 18 1135 1653 81657243 81656716 3.770000e-126 462.0
25 TraesCS5B01G104800 chrUn 93.548 279 18 0 320 598 42714040 42713762 2.980000e-112 416.0
26 TraesCS5B01G104800 chrUn 93.548 279 18 0 320 598 329559862 329559584 2.980000e-112 416.0
27 TraesCS5B01G104800 chrUn 93.548 279 18 0 320 598 329972920 329972642 2.980000e-112 416.0
28 TraesCS5B01G104800 chrUn 94.118 272 16 0 320 591 42712652 42712381 1.070000e-111 414.0
29 TraesCS5B01G104800 chrUn 96.610 177 4 2 11 185 25873902 25873726 5.240000e-75 292.0
30 TraesCS5B01G104800 chrUn 96.610 177 4 2 11 185 238568749 238568573 5.240000e-75 292.0
31 TraesCS5B01G104800 chrUn 89.286 56 4 1 4974 5029 446639779 446639832 9.610000e-08 69.4
32 TraesCS5B01G104800 chrUn 100.000 28 0 0 4964 4991 235686891 235686918 1.000000e-02 52.8
33 TraesCS5B01G104800 chrUn 100.000 28 0 0 4964 4991 248747109 248747136 1.000000e-02 52.8
34 TraesCS5B01G104800 chr3D 94.815 270 14 0 322 591 40487960 40488229 6.400000e-114 422.0
35 TraesCS5B01G104800 chr3D 93.158 190 8 4 1 185 608845381 608845570 1.900000e-69 274.0
36 TraesCS5B01G104800 chr3D 91.549 71 2 3 4956 5026 548275636 548275702 1.590000e-15 95.3
37 TraesCS5B01G104800 chr3D 92.424 66 2 2 4965 5029 278515030 278514967 2.050000e-14 91.6
38 TraesCS5B01G104800 chr3D 90.141 71 3 3 4958 5027 548271341 548271408 7.380000e-14 89.8
39 TraesCS5B01G104800 chr4D 94.074 270 16 0 322 591 228617844 228617575 1.390000e-110 411.0
40 TraesCS5B01G104800 chr4D 90.141 71 4 2 4959 5029 418772504 418772437 7.380000e-14 89.8
41 TraesCS5B01G104800 chr4D 83.077 65 9 1 4965 5029 469910533 469910471 2.080000e-04 58.4
42 TraesCS5B01G104800 chr7D 93.333 270 18 0 322 591 154397761 154397492 3.000000e-107 399.0
43 TraesCS5B01G104800 chr1D 93.333 270 18 0 322 591 416602020 416602289 3.000000e-107 399.0
44 TraesCS5B01G104800 chr1D 93.846 65 2 1 4965 5029 206041066 206041004 4.410000e-16 97.1
45 TraesCS5B01G104800 chr1D 91.176 68 4 1 4962 5029 206040979 206041044 2.050000e-14 91.6
46 TraesCS5B01G104800 chr1D 90.141 71 5 2 4959 5029 299928203 299928271 2.050000e-14 91.6
47 TraesCS5B01G104800 chr1D 100.000 29 0 0 4964 4992 427487133 427487161 3.000000e-03 54.7
48 TraesCS5B01G104800 chr3B 94.681 188 6 4 1 184 217818270 217818457 6.780000e-74 289.0
49 TraesCS5B01G104800 chr3B 92.537 67 2 3 4961 5027 725843492 725843555 5.700000e-15 93.5
50 TraesCS5B01G104800 chr2D 93.085 188 10 3 1 185 477409780 477409593 6.830000e-69 272.0
51 TraesCS5B01G104800 chr1A 85.854 205 17 7 1132 1331 517122134 517122331 1.950000e-49 207.0
52 TraesCS5B01G104800 chr1A 91.156 147 8 2 1139 1284 522946213 522946355 1.520000e-45 195.0
53 TraesCS5B01G104800 chr1A 90.476 147 9 2 1139 1284 522940049 522940191 7.070000e-44 189.0
54 TraesCS5B01G104800 chr1A 91.667 48 2 1 4965 5012 558328726 558328681 1.240000e-06 65.8
55 TraesCS5B01G104800 chr4B 85.792 183 19 3 1145 1324 506592949 506592771 2.540000e-43 187.0
56 TraesCS5B01G104800 chr4B 95.385 65 1 1 4965 5029 628556458 628556396 9.480000e-18 102.0
57 TraesCS5B01G104800 chr4B 88.406 69 6 1 4961 5029 605275913 605275979 1.230000e-11 82.4
58 TraesCS5B01G104800 chr7A 91.549 71 3 2 4959 5029 520786276 520786209 1.590000e-15 95.3
59 TraesCS5B01G104800 chr6D 89.706 68 3 2 4962 5029 144858084 144858147 3.430000e-12 84.2
60 TraesCS5B01G104800 chr6A 89.130 46 3 1 4962 5007 121643800 121643843 7.480000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G104800 chr5B 140729683 140735030 5347 False 9877.000000 9877 100.000000 1 5348 1 chr5B.!!$F1 5347
1 TraesCS5B01G104800 chr5D 127253837 127258689 4852 False 3411.500000 6156 93.493000 596 5348 2 chr5D.!!$F1 4752
2 TraesCS5B01G104800 chr5A 142839653 142845770 6117 False 879.571429 2819 92.437143 596 5348 7 chr5A.!!$F2 4752
3 TraesCS5B01G104800 chr5A 668393666 668394195 529 True 470.000000 470 83.333000 1135 1653 1 chr5A.!!$R1 518
4 TraesCS5B01G104800 chr5A 701406979 701407510 531 False 470.000000 470 83.241000 1132 1653 1 chr5A.!!$F1 521
5 TraesCS5B01G104800 chr6B 14170402 14170932 530 True 549.000000 549 85.926000 1135 1653 1 chr6B.!!$R1 518
6 TraesCS5B01G104800 chr2B 735908066 735908592 526 False 549.000000 549 86.059000 1137 1653 1 chr2B.!!$F1 516
7 TraesCS5B01G104800 chr2A 730076649 730077178 529 False 507.000000 507 84.473000 1132 1653 1 chr2A.!!$F3 521
8 TraesCS5B01G104800 chr2A 593474234 593474766 532 False 492.000000 492 83.948000 1132 1653 1 chr2A.!!$F2 521
9 TraesCS5B01G104800 chr3A 451510374 451510901 527 True 496.000000 496 84.230000 1136 1653 1 chr3A.!!$R1 517
10 TraesCS5B01G104800 chr4A 642849603 642850134 531 False 481.000000 481 83.610000 1132 1653 1 chr4A.!!$F1 521
11 TraesCS5B01G104800 chrUn 81656716 81657243 527 True 462.000000 462 83.148000 1135 1653 1 chrUn.!!$R2 518
12 TraesCS5B01G104800 chrUn 42712381 42714040 1659 True 415.000000 416 93.833000 320 598 2 chrUn.!!$R6 278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.037590 CACCCCTTGTCCAATTCGGA 59.962 55.000 0.00 0.0 43.61 4.55 F
591 592 0.240945 GTTTCTGCCCATTGTGACCG 59.759 55.000 0.00 0.0 0.00 4.79 F
893 895 0.325272 GCGTTTCTTCCTCTTCCCCT 59.675 55.000 0.00 0.0 0.00 4.79 F
990 992 0.603975 GGTGGTGACTCTTGCTGTCC 60.604 60.000 0.00 0.0 33.83 4.02 F
1105 1107 0.794981 CTCGTCGTCTTCTGCTTCCG 60.795 60.000 0.00 0.0 0.00 4.30 F
1332 1464 0.954452 CTCTTCTGGTTGTTGGTGCC 59.046 55.000 0.00 0.0 0.00 5.01 F
1621 1777 1.024046 TGATTGGAATGCGACGGTGG 61.024 55.000 0.00 0.0 0.00 4.61 F
1771 1930 1.252904 ATCCAATTGGCGCTGCTGTT 61.253 50.000 20.33 0.0 34.44 3.16 F
3139 3306 1.202604 ACAACCACAACACGGTAGAGG 60.203 52.381 0.00 0.0 34.99 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1692 0.036952 AGTCTGGATCACGCCACAAG 60.037 55.000 0.00 0.0 33.52 3.16 R
2044 2203 0.861837 GTCAGACGTTTCCAGCACAG 59.138 55.000 0.00 0.0 0.00 3.66 R
2730 2892 0.869730 CGTTGTTCGTTAGGGTTGGG 59.130 55.000 0.00 0.0 34.52 4.12 R
2988 3153 2.030946 GTGTGCCATTCGAGAACATAGC 59.969 50.000 0.00 0.0 0.00 2.97 R
2995 3160 0.392706 ACACAGTGTGCCATTCGAGA 59.607 50.000 23.21 0.0 36.98 4.04 R
3021 3186 1.070601 ACAAGCAAAAATGGTCCAGCC 59.929 47.619 0.00 0.0 37.90 4.85 R
3118 3285 2.132762 CTCTACCGTGTTGTGGTTGTC 58.867 52.381 0.00 0.0 40.96 3.18 R
3183 3350 2.734673 GCTTGCCTCACGCTCTTCG 61.735 63.158 0.00 0.0 45.38 3.79 R
4734 5322 1.006688 TAAACGCTGCTCGCTGTGA 60.007 52.632 14.78 0.0 43.23 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.702699 TCTAGAGGTTCCCCCTACCA 58.297 55.000 0.00 0.00 46.51 3.25
20 21 1.290130 TCTAGAGGTTCCCCCTACCAC 59.710 57.143 0.00 0.00 46.51 4.16
21 22 0.340908 TAGAGGTTCCCCCTACCACC 59.659 60.000 0.00 0.00 46.51 4.61
22 23 2.285144 AGGTTCCCCCTACCACCG 60.285 66.667 0.00 0.00 43.87 4.94
23 24 2.608678 GGTTCCCCCTACCACCGT 60.609 66.667 0.00 0.00 35.67 4.83
24 25 1.306056 GGTTCCCCCTACCACCGTA 60.306 63.158 0.00 0.00 35.67 4.02
25 26 0.692083 GGTTCCCCCTACCACCGTAT 60.692 60.000 0.00 0.00 35.67 3.06
26 27 1.412937 GGTTCCCCCTACCACCGTATA 60.413 57.143 0.00 0.00 35.67 1.47
27 28 2.613129 GTTCCCCCTACCACCGTATAT 58.387 52.381 0.00 0.00 0.00 0.86
28 29 3.502119 GGTTCCCCCTACCACCGTATATA 60.502 52.174 0.00 0.00 35.67 0.86
29 30 4.159557 GTTCCCCCTACCACCGTATATAA 58.840 47.826 0.00 0.00 0.00 0.98
30 31 4.484026 TCCCCCTACCACCGTATATAAA 57.516 45.455 0.00 0.00 0.00 1.40
31 32 4.419282 TCCCCCTACCACCGTATATAAAG 58.581 47.826 0.00 0.00 0.00 1.85
32 33 3.516700 CCCCCTACCACCGTATATAAAGG 59.483 52.174 4.45 4.45 0.00 3.11
33 34 4.419282 CCCCTACCACCGTATATAAAGGA 58.581 47.826 11.31 0.00 0.00 3.36
34 35 4.465305 CCCCTACCACCGTATATAAAGGAG 59.535 50.000 11.31 4.76 0.00 3.69
35 36 4.081807 CCCTACCACCGTATATAAAGGAGC 60.082 50.000 11.31 0.00 0.00 4.70
36 37 4.525487 CCTACCACCGTATATAAAGGAGCA 59.475 45.833 11.31 0.00 0.00 4.26
37 38 5.011329 CCTACCACCGTATATAAAGGAGCAA 59.989 44.000 11.31 0.00 0.00 3.91
38 39 4.957296 ACCACCGTATATAAAGGAGCAAG 58.043 43.478 11.31 0.62 0.00 4.01
39 40 4.202326 ACCACCGTATATAAAGGAGCAAGG 60.202 45.833 11.31 7.72 0.00 3.61
40 41 4.315803 CACCGTATATAAAGGAGCAAGGG 58.684 47.826 11.31 0.00 0.00 3.95
41 42 3.326880 ACCGTATATAAAGGAGCAAGGGG 59.673 47.826 11.31 0.00 0.00 4.79
42 43 3.307480 CCGTATATAAAGGAGCAAGGGGG 60.307 52.174 0.37 0.00 0.00 5.40
43 44 3.581332 CGTATATAAAGGAGCAAGGGGGA 59.419 47.826 0.00 0.00 0.00 4.81
44 45 4.322801 CGTATATAAAGGAGCAAGGGGGAG 60.323 50.000 0.00 0.00 0.00 4.30
45 46 1.226311 ATAAAGGAGCAAGGGGGAGG 58.774 55.000 0.00 0.00 0.00 4.30
46 47 1.571773 TAAAGGAGCAAGGGGGAGGC 61.572 60.000 0.00 0.00 0.00 4.70
98 99 3.391799 GAGTCCTACTCCTCCTCCTTT 57.608 52.381 0.00 0.00 39.28 3.11
99 100 3.293337 GAGTCCTACTCCTCCTCCTTTC 58.707 54.545 0.00 0.00 39.28 2.62
100 101 2.023791 AGTCCTACTCCTCCTCCTTTCC 60.024 54.545 0.00 0.00 0.00 3.13
101 102 2.023791 GTCCTACTCCTCCTCCTTTCCT 60.024 54.545 0.00 0.00 0.00 3.36
102 103 2.660556 TCCTACTCCTCCTCCTTTCCTT 59.339 50.000 0.00 0.00 0.00 3.36
103 104 2.769095 CCTACTCCTCCTCCTTTCCTTG 59.231 54.545 0.00 0.00 0.00 3.61
104 105 2.424684 ACTCCTCCTCCTTTCCTTGT 57.575 50.000 0.00 0.00 0.00 3.16
105 106 2.707554 ACTCCTCCTCCTTTCCTTGTT 58.292 47.619 0.00 0.00 0.00 2.83
106 107 2.373502 ACTCCTCCTCCTTTCCTTGTTG 59.626 50.000 0.00 0.00 0.00 3.33
107 108 1.705186 TCCTCCTCCTTTCCTTGTTGG 59.295 52.381 0.00 0.00 37.10 3.77
108 109 1.705186 CCTCCTCCTTTCCTTGTTGGA 59.295 52.381 0.00 0.00 44.51 3.53
114 115 3.583086 CTCCTTTCCTTGTTGGAGTAGGA 59.417 47.826 13.35 13.35 46.38 2.94
115 116 3.583086 TCCTTTCCTTGTTGGAGTAGGAG 59.417 47.826 11.23 0.00 45.04 3.69
116 117 4.697312 TCCTTTCCTTGTTGGAGTAGGAGA 60.697 45.833 11.23 0.00 45.04 3.71
117 118 6.513595 TCCTTTCCTTGTTGGAGTAGGAGAG 61.514 48.000 11.23 0.00 45.04 3.20
118 119 3.827817 TCCTTGTTGGAGTAGGAGAGA 57.172 47.619 0.00 0.00 40.56 3.10
119 120 4.127918 TCCTTGTTGGAGTAGGAGAGAA 57.872 45.455 0.00 0.00 40.56 2.87
120 121 4.090090 TCCTTGTTGGAGTAGGAGAGAAG 58.910 47.826 0.00 0.00 40.56 2.85
121 122 3.196685 CCTTGTTGGAGTAGGAGAGAAGG 59.803 52.174 0.00 0.00 38.35 3.46
122 123 3.827817 TGTTGGAGTAGGAGAGAAGGA 57.172 47.619 0.00 0.00 0.00 3.36
123 124 4.127918 TGTTGGAGTAGGAGAGAAGGAA 57.872 45.455 0.00 0.00 0.00 3.36
124 125 4.489737 TGTTGGAGTAGGAGAGAAGGAAA 58.510 43.478 0.00 0.00 0.00 3.13
125 126 4.528596 TGTTGGAGTAGGAGAGAAGGAAAG 59.471 45.833 0.00 0.00 0.00 2.62
126 127 4.676799 TGGAGTAGGAGAGAAGGAAAGA 57.323 45.455 0.00 0.00 0.00 2.52
127 128 4.605183 TGGAGTAGGAGAGAAGGAAAGAG 58.395 47.826 0.00 0.00 0.00 2.85
128 129 3.958147 GGAGTAGGAGAGAAGGAAAGAGG 59.042 52.174 0.00 0.00 0.00 3.69
129 130 4.325501 GGAGTAGGAGAGAAGGAAAGAGGA 60.326 50.000 0.00 0.00 0.00 3.71
130 131 4.867086 AGTAGGAGAGAAGGAAAGAGGAG 58.133 47.826 0.00 0.00 0.00 3.69
131 132 3.114643 AGGAGAGAAGGAAAGAGGAGG 57.885 52.381 0.00 0.00 0.00 4.30
132 133 2.657459 AGGAGAGAAGGAAAGAGGAGGA 59.343 50.000 0.00 0.00 0.00 3.71
133 134 3.031013 GGAGAGAAGGAAAGAGGAGGAG 58.969 54.545 0.00 0.00 0.00 3.69
134 135 3.309556 GGAGAGAAGGAAAGAGGAGGAGA 60.310 52.174 0.00 0.00 0.00 3.71
135 136 3.954258 GAGAGAAGGAAAGAGGAGGAGAG 59.046 52.174 0.00 0.00 0.00 3.20
136 137 3.031013 GAGAAGGAAAGAGGAGGAGAGG 58.969 54.545 0.00 0.00 0.00 3.69
137 138 2.115427 GAAGGAAAGAGGAGGAGAGGG 58.885 57.143 0.00 0.00 0.00 4.30
138 139 1.398799 AGGAAAGAGGAGGAGAGGGA 58.601 55.000 0.00 0.00 0.00 4.20
139 140 1.725182 AGGAAAGAGGAGGAGAGGGAA 59.275 52.381 0.00 0.00 0.00 3.97
140 141 2.114506 AGGAAAGAGGAGGAGAGGGAAA 59.885 50.000 0.00 0.00 0.00 3.13
141 142 2.913617 GGAAAGAGGAGGAGAGGGAAAA 59.086 50.000 0.00 0.00 0.00 2.29
142 143 3.054728 GGAAAGAGGAGGAGAGGGAAAAG 60.055 52.174 0.00 0.00 0.00 2.27
143 144 2.262266 AGAGGAGGAGAGGGAAAAGG 57.738 55.000 0.00 0.00 0.00 3.11
144 145 1.725182 AGAGGAGGAGAGGGAAAAGGA 59.275 52.381 0.00 0.00 0.00 3.36
145 146 2.114506 AGAGGAGGAGAGGGAAAAGGAA 59.885 50.000 0.00 0.00 0.00 3.36
146 147 2.913617 GAGGAGGAGAGGGAAAAGGAAA 59.086 50.000 0.00 0.00 0.00 3.13
147 148 3.330998 GAGGAGGAGAGGGAAAAGGAAAA 59.669 47.826 0.00 0.00 0.00 2.29
148 149 3.332187 AGGAGGAGAGGGAAAAGGAAAAG 59.668 47.826 0.00 0.00 0.00 2.27
149 150 3.562393 GGAGGAGAGGGAAAAGGAAAAGG 60.562 52.174 0.00 0.00 0.00 3.11
150 151 2.380249 AGGAGAGGGAAAAGGAAAAGGG 59.620 50.000 0.00 0.00 0.00 3.95
151 152 2.557676 GGAGAGGGAAAAGGAAAAGGGG 60.558 54.545 0.00 0.00 0.00 4.79
152 153 1.433199 AGAGGGAAAAGGAAAAGGGGG 59.567 52.381 0.00 0.00 0.00 5.40
153 154 0.178903 AGGGAAAAGGAAAAGGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
154 155 0.178903 GGGAAAAGGAAAAGGGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
155 156 0.976641 GGAAAAGGAAAAGGGGGCTG 59.023 55.000 0.00 0.00 0.00 4.85
156 157 0.321671 GAAAAGGAAAAGGGGGCTGC 59.678 55.000 0.00 0.00 0.00 5.25
157 158 0.399806 AAAAGGAAAAGGGGGCTGCA 60.400 50.000 0.50 0.00 0.00 4.41
158 159 1.121407 AAAGGAAAAGGGGGCTGCAC 61.121 55.000 0.50 0.00 0.00 4.57
159 160 2.997315 GGAAAAGGGGGCTGCACC 60.997 66.667 13.91 13.91 37.93 5.01
168 169 4.284550 GGCTGCACCCCTTGTCCA 62.285 66.667 0.50 0.00 0.00 4.02
169 170 2.203480 GCTGCACCCCTTGTCCAA 60.203 61.111 0.00 0.00 0.00 3.53
170 171 1.607467 GCTGCACCCCTTGTCCAAT 60.607 57.895 0.00 0.00 0.00 3.16
171 172 1.187567 GCTGCACCCCTTGTCCAATT 61.188 55.000 0.00 0.00 0.00 2.32
172 173 0.890683 CTGCACCCCTTGTCCAATTC 59.109 55.000 0.00 0.00 0.00 2.17
173 174 0.893270 TGCACCCCTTGTCCAATTCG 60.893 55.000 0.00 0.00 0.00 3.34
174 175 1.595093 GCACCCCTTGTCCAATTCGG 61.595 60.000 0.00 0.00 0.00 4.30
175 176 0.037590 CACCCCTTGTCCAATTCGGA 59.962 55.000 0.00 0.00 43.61 4.55
183 184 2.296920 TCCAATTCGGACCAGAGGG 58.703 57.895 0.00 0.00 39.64 4.30
184 185 1.224592 CCAATTCGGACCAGAGGGG 59.775 63.158 0.00 0.00 44.81 4.79
214 215 6.642707 TTTTTATTTCCGATCCCGCATAAT 57.357 33.333 0.00 0.00 0.00 1.28
215 216 6.642707 TTTTATTTCCGATCCCGCATAATT 57.357 33.333 0.00 0.00 0.00 1.40
216 217 6.642707 TTTATTTCCGATCCCGCATAATTT 57.357 33.333 0.00 0.00 0.00 1.82
217 218 3.980646 TTTCCGATCCCGCATAATTTG 57.019 42.857 0.00 0.00 0.00 2.32
237 238 3.908737 GGGACGTGGGATATAGCAC 57.091 57.895 0.00 0.00 0.00 4.40
238 239 1.045407 GGGACGTGGGATATAGCACA 58.955 55.000 0.00 0.00 0.00 4.57
239 240 1.623811 GGGACGTGGGATATAGCACAT 59.376 52.381 0.00 0.00 0.00 3.21
240 241 2.353803 GGGACGTGGGATATAGCACATC 60.354 54.545 0.00 0.00 0.00 3.06
241 242 2.563179 GGACGTGGGATATAGCACATCT 59.437 50.000 0.00 0.00 0.00 2.90
242 243 3.006967 GGACGTGGGATATAGCACATCTT 59.993 47.826 0.00 0.00 0.00 2.40
243 244 3.990469 GACGTGGGATATAGCACATCTTG 59.010 47.826 0.00 0.00 0.00 3.02
244 245 3.388024 ACGTGGGATATAGCACATCTTGT 59.612 43.478 0.00 0.00 0.00 3.16
245 246 4.141711 ACGTGGGATATAGCACATCTTGTT 60.142 41.667 0.00 0.00 0.00 2.83
246 247 4.816385 CGTGGGATATAGCACATCTTGTTT 59.184 41.667 0.00 0.00 0.00 2.83
247 248 5.296780 CGTGGGATATAGCACATCTTGTTTT 59.703 40.000 0.00 0.00 0.00 2.43
248 249 6.183360 CGTGGGATATAGCACATCTTGTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
268 269 2.273370 TTTTACTGCTAGAGACGCCG 57.727 50.000 0.00 0.00 0.00 6.46
269 270 0.454600 TTTACTGCTAGAGACGCCGG 59.545 55.000 0.00 0.00 0.00 6.13
270 271 0.393402 TTACTGCTAGAGACGCCGGA 60.393 55.000 5.05 0.00 0.00 5.14
271 272 0.814410 TACTGCTAGAGACGCCGGAG 60.814 60.000 5.05 3.72 0.00 4.63
272 273 1.820056 CTGCTAGAGACGCCGGAGA 60.820 63.158 13.83 0.00 0.00 3.71
273 274 1.377366 CTGCTAGAGACGCCGGAGAA 61.377 60.000 13.83 0.00 0.00 2.87
274 275 0.752009 TGCTAGAGACGCCGGAGAAT 60.752 55.000 13.83 0.00 0.00 2.40
275 276 1.236628 GCTAGAGACGCCGGAGAATA 58.763 55.000 13.83 0.00 0.00 1.75
276 277 1.069091 GCTAGAGACGCCGGAGAATAC 60.069 57.143 13.83 0.18 0.00 1.89
277 278 2.496111 CTAGAGACGCCGGAGAATACT 58.504 52.381 13.83 8.06 0.00 2.12
278 279 1.765230 AGAGACGCCGGAGAATACTT 58.235 50.000 13.83 0.00 0.00 2.24
279 280 2.100989 AGAGACGCCGGAGAATACTTT 58.899 47.619 13.83 0.00 0.00 2.66
280 281 2.496470 AGAGACGCCGGAGAATACTTTT 59.504 45.455 13.83 0.00 0.00 2.27
281 282 3.056035 AGAGACGCCGGAGAATACTTTTT 60.056 43.478 13.83 0.00 0.00 1.94
298 299 3.772619 TTTTTAGGGATCGCCGGAG 57.227 52.632 5.05 0.00 33.83 4.63
299 300 1.196911 TTTTTAGGGATCGCCGGAGA 58.803 50.000 11.31 11.31 33.83 3.71
300 301 1.196911 TTTTAGGGATCGCCGGAGAA 58.803 50.000 13.28 0.00 33.83 2.87
301 302 1.420430 TTTAGGGATCGCCGGAGAAT 58.580 50.000 13.28 0.40 33.83 2.40
302 303 2.297698 TTAGGGATCGCCGGAGAATA 57.702 50.000 13.28 0.27 33.83 1.75
303 304 1.542492 TAGGGATCGCCGGAGAATAC 58.458 55.000 13.28 6.91 33.83 1.89
304 305 1.186267 AGGGATCGCCGGAGAATACC 61.186 60.000 13.28 14.48 33.83 2.73
305 306 1.186267 GGGATCGCCGGAGAATACCT 61.186 60.000 13.28 0.00 33.83 3.08
306 307 1.542492 GGATCGCCGGAGAATACCTA 58.458 55.000 13.28 0.00 0.00 3.08
307 308 1.473278 GGATCGCCGGAGAATACCTAG 59.527 57.143 13.28 0.00 0.00 3.02
308 309 1.473278 GATCGCCGGAGAATACCTAGG 59.527 57.143 13.28 7.41 0.00 3.02
309 310 0.475475 TCGCCGGAGAATACCTAGGA 59.525 55.000 17.98 0.00 0.00 2.94
310 311 0.597072 CGCCGGAGAATACCTAGGAC 59.403 60.000 17.98 3.90 0.00 3.85
311 312 0.597072 GCCGGAGAATACCTAGGACG 59.403 60.000 17.98 7.73 0.00 4.79
312 313 1.816961 GCCGGAGAATACCTAGGACGA 60.817 57.143 17.98 0.00 0.00 4.20
313 314 2.152830 CCGGAGAATACCTAGGACGAG 58.847 57.143 17.98 0.00 0.00 4.18
314 315 2.224475 CCGGAGAATACCTAGGACGAGA 60.224 54.545 17.98 0.00 0.00 4.04
315 316 3.068560 CGGAGAATACCTAGGACGAGAG 58.931 54.545 17.98 0.00 0.00 3.20
316 317 3.414269 GGAGAATACCTAGGACGAGAGG 58.586 54.545 17.98 0.00 38.92 3.69
317 318 3.072768 GGAGAATACCTAGGACGAGAGGA 59.927 52.174 17.98 0.00 36.61 3.71
318 319 4.263594 GGAGAATACCTAGGACGAGAGGAT 60.264 50.000 17.98 0.00 36.61 3.24
340 341 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
366 367 6.420913 ACTTAGGAGTAACATCACACACTT 57.579 37.500 0.00 0.00 33.32 3.16
380 381 6.751514 TCACACACTTCAATACAAGTTTGT 57.248 33.333 2.75 2.75 44.48 2.83
453 454 3.135994 GTTACCGGAACATCACACACTT 58.864 45.455 9.46 0.00 38.02 3.16
457 458 2.616376 CCGGAACATCACACACTTCAAA 59.384 45.455 0.00 0.00 0.00 2.69
519 520 7.492524 CATGACACTACATACATGTTCCTACT 58.507 38.462 2.30 0.00 41.97 2.57
520 521 7.476540 TGACACTACATACATGTTCCTACTT 57.523 36.000 2.30 0.00 41.97 2.24
533 534 7.842743 ACATGTTCCTACTTACTATGGAGGTAA 59.157 37.037 0.00 0.00 0.00 2.85
591 592 0.240945 GTTTCTGCCCATTGTGACCG 59.759 55.000 0.00 0.00 0.00 4.79
593 594 2.034066 CTGCCCATTGTGACCGGT 59.966 61.111 6.92 6.92 0.00 5.28
757 759 1.003866 CGCGCTAGGGCTTATCAAAAC 60.004 52.381 26.90 0.00 36.09 2.43
812 814 1.687493 CGCCTCCCTCCTTTCTCCT 60.687 63.158 0.00 0.00 0.00 3.69
813 815 0.397254 CGCCTCCCTCCTTTCTCCTA 60.397 60.000 0.00 0.00 0.00 2.94
852 854 2.962569 GCCCCCACTTTTTCGCTC 59.037 61.111 0.00 0.00 0.00 5.03
863 865 2.124507 TTTTCGCTCCTCTGGGTGGG 62.125 60.000 0.00 0.00 39.43 4.61
893 895 0.325272 GCGTTTCTTCCTCTTCCCCT 59.675 55.000 0.00 0.00 0.00 4.79
979 981 4.468689 GCCTAGGGCGGTGGTGAC 62.469 72.222 11.72 0.00 39.62 3.67
981 983 2.722201 CCTAGGGCGGTGGTGACTC 61.722 68.421 0.00 0.00 0.00 3.36
990 992 0.603975 GGTGGTGACTCTTGCTGTCC 60.604 60.000 0.00 0.00 33.83 4.02
1105 1107 0.794981 CTCGTCGTCTTCTGCTTCCG 60.795 60.000 0.00 0.00 0.00 4.30
1170 1172 1.293498 GCAGGAGAAGAAGCCACGA 59.707 57.895 0.00 0.00 0.00 4.35
1247 1262 1.228510 GCCCCCATCTCTTTCCCTG 59.771 63.158 0.00 0.00 0.00 4.45
1313 1445 5.808540 TGTACCGTCTAATTAACATGCTCAC 59.191 40.000 0.00 0.00 0.00 3.51
1332 1464 0.954452 CTCTTCTGGTTGTTGGTGCC 59.046 55.000 0.00 0.00 0.00 5.01
1375 1507 8.617290 AGGATTTAGTTCACACGTTTATTCTT 57.383 30.769 0.00 0.00 0.00 2.52
1420 1566 2.697431 TTTAGTTCACACGCATTGCC 57.303 45.000 2.41 0.00 0.00 4.52
1479 1630 3.321682 TGCATTGCAAGCCTACTTTTCTT 59.678 39.130 9.33 0.00 34.76 2.52
1481 1632 4.797275 GCATTGCAAGCCTACTTTTCTTGT 60.797 41.667 4.94 0.00 39.36 3.16
1507 1658 7.971722 TGCATTGTTTCTTAGAATCATGATGTG 59.028 33.333 9.46 0.00 0.00 3.21
1521 1672 6.676990 TCATGATGTGACCTATATGCTCTT 57.323 37.500 0.00 0.00 0.00 2.85
1540 1692 8.301730 TGCTCTTTGATTTTGATGATGTTTTC 57.698 30.769 0.00 0.00 0.00 2.29
1554 1707 1.606668 TGTTTTCTTGTGGCGTGATCC 59.393 47.619 0.00 0.00 0.00 3.36
1580 1734 7.009631 CAGACTACGATTTTATCCACTGTTCTG 59.990 40.741 0.00 0.00 0.00 3.02
1621 1777 1.024046 TGATTGGAATGCGACGGTGG 61.024 55.000 0.00 0.00 0.00 4.61
1655 1812 3.076621 TCTCTTGAGCATCGTTTTGCAT 58.923 40.909 9.65 0.00 45.23 3.96
1663 1820 4.171005 AGCATCGTTTTGCATGAAGATTG 58.829 39.130 0.00 0.00 45.23 2.67
1664 1821 3.922240 GCATCGTTTTGCATGAAGATTGT 59.078 39.130 0.00 0.00 42.31 2.71
1665 1822 5.094812 GCATCGTTTTGCATGAAGATTGTA 58.905 37.500 0.00 0.00 42.31 2.41
1700 1857 5.659440 ACATGTGAACAAACCAGTTTTCT 57.341 34.783 0.00 0.00 0.00 2.52
1771 1930 1.252904 ATCCAATTGGCGCTGCTGTT 61.253 50.000 20.33 0.00 34.44 3.16
1779 1938 1.423056 GCGCTGCTGTTGTCTCATC 59.577 57.895 0.00 0.00 0.00 2.92
1889 2048 9.085250 CGTGAAATTATGAGAGATATCATCCAG 57.915 37.037 5.32 0.00 40.40 3.86
2056 2215 4.574599 ACAAAGATTCTGTGCTGGAAAC 57.425 40.909 3.63 0.00 0.00 2.78
2084 2243 7.394077 TCTGACAAGGATGAAGCATTTTCATTA 59.606 33.333 4.12 0.00 39.08 1.90
2120 2279 3.384789 TCAGCACTCAACAGTTACTGACT 59.615 43.478 20.07 2.61 37.93 3.41
2267 2426 6.603997 GGGAGTCTCAGACTAATAGTTCTGAA 59.396 42.308 7.51 9.86 43.53 3.02
2278 2437 1.999648 AGTTCTGAAATGCAAGCCCA 58.000 45.000 0.00 0.00 0.00 5.36
2309 2468 6.689554 TGCTCATGTTTCTGATTTGCATAAA 58.310 32.000 0.00 0.00 0.00 1.40
2327 2486 8.519492 TGCATAAAGAAATTAAGCTCAACAAC 57.481 30.769 0.00 0.00 38.65 3.32
2344 2503 2.593725 CGCAGGGGATGAGCATGG 60.594 66.667 0.00 0.00 0.00 3.66
2376 2535 4.039151 AGTAGCATCACTGATGAAGTCG 57.961 45.455 21.20 0.00 42.09 4.18
2386 2545 1.902508 TGATGAAGTCGCTCTTTCCCT 59.097 47.619 0.00 0.00 36.40 4.20
2392 2551 1.826096 AGTCGCTCTTTCCCTAGAACC 59.174 52.381 0.00 0.00 0.00 3.62
2397 2556 3.181485 CGCTCTTTCCCTAGAACCTAGTG 60.181 52.174 0.00 0.00 0.00 2.74
2398 2557 3.770388 GCTCTTTCCCTAGAACCTAGTGT 59.230 47.826 0.00 0.00 0.00 3.55
2399 2558 4.223255 GCTCTTTCCCTAGAACCTAGTGTT 59.777 45.833 0.00 0.00 40.81 3.32
2450 2612 2.303890 TGAGCATGTGACTTCACCTGAT 59.696 45.455 16.18 11.10 45.88 2.90
2497 2659 7.168219 ACTTCTGTTGATGAGGCTATTGTTTA 58.832 34.615 0.00 0.00 0.00 2.01
2530 2692 1.272781 GGCGTTCTTCAGACAGATCG 58.727 55.000 7.91 7.91 38.50 3.69
2620 2782 3.887716 GCAGATGGCCAATTTAGATCTGT 59.112 43.478 24.20 0.00 41.35 3.41
2637 2799 4.085357 TCTGTAACACCTGCAACTCAAT 57.915 40.909 0.00 0.00 0.00 2.57
2654 2816 6.252599 ACTCAATTGGATGCTTATACCTCA 57.747 37.500 5.42 0.00 0.00 3.86
2676 2838 6.743110 TCAAATACAAGTGCAGCAACAATAA 58.257 32.000 0.00 0.00 0.00 1.40
2773 2935 3.439154 AGTCAGAAGATCTTGCCTCTCA 58.561 45.455 14.00 0.00 0.00 3.27
2809 2971 7.711339 GGATACAAAGGTTAGTCCATAAGTCTG 59.289 40.741 0.00 0.00 39.02 3.51
2883 3045 9.325198 TCATGTGATAAGATTGTATGGTTGTAC 57.675 33.333 0.00 0.00 0.00 2.90
2891 3053 7.766219 AGATTGTATGGTTGTACGTATCAAC 57.234 36.000 22.19 22.19 42.76 3.18
2905 3067 4.795268 CGTATCAACGTATCATAGCCTGT 58.205 43.478 0.00 0.00 44.21 4.00
2906 3068 5.934921 CGTATCAACGTATCATAGCCTGTA 58.065 41.667 0.00 0.00 44.21 2.74
2907 3069 6.552629 CGTATCAACGTATCATAGCCTGTAT 58.447 40.000 0.00 0.00 44.21 2.29
2908 3070 6.687531 CGTATCAACGTATCATAGCCTGTATC 59.312 42.308 0.00 0.00 44.21 2.24
2909 3071 6.590234 ATCAACGTATCATAGCCTGTATCA 57.410 37.500 0.00 0.00 0.00 2.15
2910 3072 6.399639 TCAACGTATCATAGCCTGTATCAA 57.600 37.500 0.00 0.00 0.00 2.57
2911 3073 6.213677 TCAACGTATCATAGCCTGTATCAAC 58.786 40.000 0.00 0.00 0.00 3.18
2912 3074 4.795268 ACGTATCATAGCCTGTATCAACG 58.205 43.478 0.00 0.00 0.00 4.10
2913 3075 4.277672 ACGTATCATAGCCTGTATCAACGT 59.722 41.667 0.00 0.00 35.27 3.99
2914 3076 5.471116 ACGTATCATAGCCTGTATCAACGTA 59.529 40.000 0.00 0.00 37.99 3.57
2915 3077 6.150641 ACGTATCATAGCCTGTATCAACGTAT 59.849 38.462 0.00 0.00 37.99 3.06
2916 3078 6.687531 CGTATCATAGCCTGTATCAACGTATC 59.312 42.308 0.00 0.00 0.00 2.24
2917 3079 6.590234 ATCATAGCCTGTATCAACGTATCA 57.410 37.500 0.00 0.00 0.00 2.15
2918 3080 6.590234 TCATAGCCTGTATCAACGTATCAT 57.410 37.500 0.00 0.00 0.00 2.45
2919 3081 7.696992 TCATAGCCTGTATCAACGTATCATA 57.303 36.000 0.00 0.00 0.00 2.15
2920 3082 7.762382 TCATAGCCTGTATCAACGTATCATAG 58.238 38.462 0.00 0.00 0.00 2.23
2921 3083 4.810790 AGCCTGTATCAACGTATCATAGC 58.189 43.478 0.00 0.00 0.00 2.97
2953 3115 4.537135 TCACTTATCTTCCAGTGACCAC 57.463 45.455 0.00 0.00 43.63 4.16
2967 3132 4.013728 AGTGACCACTATCTCTCTGACAC 58.986 47.826 0.03 0.00 40.43 3.67
2972 3137 4.461081 ACCACTATCTCTCTGACACTGTTC 59.539 45.833 0.00 0.00 0.00 3.18
2988 3153 8.773645 TGACACTGTTCTGTTTACTGATTTATG 58.226 33.333 0.00 0.00 0.00 1.90
3022 3187 2.020720 TGGCACACTGTGTTTAGTTGG 58.979 47.619 11.40 0.00 35.75 3.77
3023 3188 1.269051 GGCACACTGTGTTTAGTTGGC 60.269 52.381 11.40 9.50 35.75 4.52
3106 3273 5.675684 TTCTGCTTCTTTTCAGGGTTTTT 57.324 34.783 0.00 0.00 0.00 1.94
3139 3306 1.202604 ACAACCACAACACGGTAGAGG 60.203 52.381 0.00 0.00 34.99 3.69
3146 3313 3.056821 CACAACACGGTAGAGGAAGATGA 60.057 47.826 0.00 0.00 0.00 2.92
3275 3442 3.644823 CACTTTGCATTCTGACATTGCA 58.355 40.909 5.33 5.33 44.12 4.08
3327 3864 5.163519 GCATACATCACAAAAGGCCATAACT 60.164 40.000 5.01 0.00 0.00 2.24
3497 4047 2.283298 CATCTTAGCGTGCATTGAGGT 58.717 47.619 0.00 0.00 0.00 3.85
3525 4075 2.517650 AGCTTCGGAACAGCTATAGC 57.482 50.000 17.33 17.33 46.18 2.97
3678 4228 5.531634 ACATTTTCATGGTACTGCACTTTG 58.468 37.500 0.00 0.00 34.27 2.77
3679 4229 3.641437 TTTCATGGTACTGCACTTTGC 57.359 42.857 0.00 0.00 45.29 3.68
3694 4244 4.990426 GCACTTTGCCAAGTAACATTTCAT 59.010 37.500 2.38 0.00 41.69 2.57
3696 4246 6.308766 GCACTTTGCCAAGTAACATTTCATAG 59.691 38.462 2.38 0.00 41.69 2.23
3697 4247 7.592938 CACTTTGCCAAGTAACATTTCATAGA 58.407 34.615 2.38 0.00 41.69 1.98
3698 4248 8.081633 CACTTTGCCAAGTAACATTTCATAGAA 58.918 33.333 2.38 0.00 41.69 2.10
3699 4249 8.637986 ACTTTGCCAAGTAACATTTCATAGAAA 58.362 29.630 0.42 0.00 41.81 2.52
3700 4250 8.810652 TTTGCCAAGTAACATTTCATAGAAAC 57.189 30.769 0.00 0.00 0.00 2.78
3701 4251 6.919721 TGCCAAGTAACATTTCATAGAAACC 58.080 36.000 0.00 0.00 0.00 3.27
3702 4252 6.491745 TGCCAAGTAACATTTCATAGAAACCA 59.508 34.615 0.00 0.00 0.00 3.67
3703 4253 6.806739 GCCAAGTAACATTTCATAGAAACCAC 59.193 38.462 0.00 0.00 0.00 4.16
3704 4254 7.523052 GCCAAGTAACATTTCATAGAAACCACA 60.523 37.037 0.00 0.00 0.00 4.17
3854 4411 0.899717 TTTTGCCCACAGCCCTGATC 60.900 55.000 1.69 0.00 42.71 2.92
3872 4429 9.705290 GCCCTGATCTGAATTTTAAAAGTTTTA 57.295 29.630 6.79 3.88 0.00 1.52
3909 4466 7.346751 ACTTTTCTGGTTGCTTAAATCTTGA 57.653 32.000 0.00 0.00 0.00 3.02
3911 4468 8.424133 ACTTTTCTGGTTGCTTAAATCTTGATT 58.576 29.630 0.00 0.00 0.00 2.57
4159 4744 5.070847 GGGAATGAGATTAACCATGCCAAAT 59.929 40.000 11.42 0.00 39.73 2.32
4173 4758 8.253867 ACCATGCCAAATGATTGATAACTTAT 57.746 30.769 0.00 0.00 38.94 1.73
4206 4791 6.363577 ACTTCCGTATATTCAACAATGCAG 57.636 37.500 0.00 0.00 0.00 4.41
4329 4914 5.079643 AGGGCATTTGTTGTTTCTATGTCT 58.920 37.500 0.00 0.00 0.00 3.41
4402 4987 0.325296 TGGGACGTCTTCCTGCCTAT 60.325 55.000 16.46 0.00 45.09 2.57
4456 5043 6.352823 CCAATCTCCCTGATGCATATAGATGT 60.353 42.308 0.00 0.00 35.21 3.06
4482 5070 2.639286 CGCAGCACTTTGGGTGTC 59.361 61.111 0.00 0.00 46.86 3.67
4494 5082 5.240623 CACTTTGGGTGTCTTGTTATGCTTA 59.759 40.000 0.00 0.00 40.79 3.09
4693 5281 4.576053 CGAGCATGGATGATTTCCTGTTAA 59.424 41.667 0.00 0.00 45.68 2.01
4694 5282 5.277683 CGAGCATGGATGATTTCCTGTTAAG 60.278 44.000 0.00 0.00 45.68 1.85
4708 5296 6.959639 TCCTGTTAAGACTTTTCTGCAATT 57.040 33.333 0.00 0.00 29.98 2.32
4733 5321 2.556286 GAAGCTTGTTCCTTCCCCG 58.444 57.895 2.10 0.00 34.12 5.73
4734 5322 0.250770 GAAGCTTGTTCCTTCCCCGT 60.251 55.000 2.10 0.00 34.12 5.28
4737 5325 1.235281 GCTTGTTCCTTCCCCGTCAC 61.235 60.000 0.00 0.00 0.00 3.67
4738 5326 0.107831 CTTGTTCCTTCCCCGTCACA 59.892 55.000 0.00 0.00 0.00 3.58
4739 5327 0.107831 TTGTTCCTTCCCCGTCACAG 59.892 55.000 0.00 0.00 0.00 3.66
4740 5328 1.671379 GTTCCTTCCCCGTCACAGC 60.671 63.158 0.00 0.00 0.00 4.40
4834 5422 3.820467 TGCTCTTGATACACAAAACCCAG 59.180 43.478 0.00 0.00 38.08 4.45
4850 5438 7.451566 ACAAAACCCAGAGAGTATTTTAAGCAT 59.548 33.333 0.00 0.00 0.00 3.79
4972 5691 1.142870 TGCTGTGTTTGCTACTCCCTT 59.857 47.619 0.00 0.00 0.00 3.95
5029 5750 9.088512 ACTAAATTAGTGATCTAAACGCTCTTG 57.911 33.333 4.66 0.00 39.23 3.02
5030 5751 5.975410 ATTAGTGATCTAAACGCTCTTGC 57.025 39.130 0.00 0.00 39.23 4.01
5040 5765 3.936372 AACGCTCTTGCAGAGTACTTA 57.064 42.857 12.71 0.00 44.12 2.24
5054 5779 9.404848 TGCAGAGTACTTAGCTATAACTAAAGA 57.595 33.333 17.77 0.00 31.92 2.52
5101 6982 2.030893 TCAATTCCAAGAACGCAAGCTG 60.031 45.455 0.00 0.00 45.62 4.24
5225 7106 7.824289 GCATCCAATCTAACACAGCCTATTATA 59.176 37.037 0.00 0.00 0.00 0.98
5226 7107 9.896645 CATCCAATCTAACACAGCCTATTATAT 57.103 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.086610 TATACGGTGGTAGGGGGAAC 57.913 55.000 0.00 0.00 30.81 3.62
8 9 4.484026 TTATATACGGTGGTAGGGGGAA 57.516 45.455 0.00 0.00 30.81 3.97
9 10 4.419282 CTTTATATACGGTGGTAGGGGGA 58.581 47.826 0.00 0.00 30.81 4.81
10 11 3.516700 CCTTTATATACGGTGGTAGGGGG 59.483 52.174 0.00 0.00 30.81 5.40
11 12 4.419282 TCCTTTATATACGGTGGTAGGGG 58.581 47.826 0.00 0.00 30.81 4.79
12 13 4.081807 GCTCCTTTATATACGGTGGTAGGG 60.082 50.000 0.00 0.00 30.81 3.53
13 14 4.525487 TGCTCCTTTATATACGGTGGTAGG 59.475 45.833 0.00 0.00 30.81 3.18
14 15 5.717078 TGCTCCTTTATATACGGTGGTAG 57.283 43.478 0.00 0.00 30.81 3.18
15 16 5.011329 CCTTGCTCCTTTATATACGGTGGTA 59.989 44.000 0.00 0.00 0.00 3.25
16 17 4.202326 CCTTGCTCCTTTATATACGGTGGT 60.202 45.833 0.00 0.00 0.00 4.16
17 18 4.315803 CCTTGCTCCTTTATATACGGTGG 58.684 47.826 0.00 0.00 0.00 4.61
18 19 4.315803 CCCTTGCTCCTTTATATACGGTG 58.684 47.826 0.00 0.00 0.00 4.94
19 20 3.326880 CCCCTTGCTCCTTTATATACGGT 59.673 47.826 0.00 0.00 0.00 4.83
20 21 3.307480 CCCCCTTGCTCCTTTATATACGG 60.307 52.174 0.00 0.00 0.00 4.02
21 22 3.581332 TCCCCCTTGCTCCTTTATATACG 59.419 47.826 0.00 0.00 0.00 3.06
22 23 4.019231 CCTCCCCCTTGCTCCTTTATATAC 60.019 50.000 0.00 0.00 0.00 1.47
23 24 4.175962 CCTCCCCCTTGCTCCTTTATATA 58.824 47.826 0.00 0.00 0.00 0.86
24 25 2.989571 CCTCCCCCTTGCTCCTTTATAT 59.010 50.000 0.00 0.00 0.00 0.86
25 26 2.418669 CCTCCCCCTTGCTCCTTTATA 58.581 52.381 0.00 0.00 0.00 0.98
26 27 1.226311 CCTCCCCCTTGCTCCTTTAT 58.774 55.000 0.00 0.00 0.00 1.40
27 28 1.571773 GCCTCCCCCTTGCTCCTTTA 61.572 60.000 0.00 0.00 0.00 1.85
28 29 2.923910 GCCTCCCCCTTGCTCCTTT 61.924 63.158 0.00 0.00 0.00 3.11
29 30 3.342477 GCCTCCCCCTTGCTCCTT 61.342 66.667 0.00 0.00 0.00 3.36
78 79 3.293337 GAAAGGAGGAGGAGTAGGACTC 58.707 54.545 0.00 0.00 44.32 3.36
79 80 2.023791 GGAAAGGAGGAGGAGTAGGACT 60.024 54.545 0.00 0.00 0.00 3.85
80 81 2.023791 AGGAAAGGAGGAGGAGTAGGAC 60.024 54.545 0.00 0.00 0.00 3.85
81 82 2.298951 AGGAAAGGAGGAGGAGTAGGA 58.701 52.381 0.00 0.00 0.00 2.94
82 83 2.769095 CAAGGAAAGGAGGAGGAGTAGG 59.231 54.545 0.00 0.00 0.00 3.18
83 84 3.445987 ACAAGGAAAGGAGGAGGAGTAG 58.554 50.000 0.00 0.00 0.00 2.57
84 85 3.562108 ACAAGGAAAGGAGGAGGAGTA 57.438 47.619 0.00 0.00 0.00 2.59
85 86 2.373502 CAACAAGGAAAGGAGGAGGAGT 59.626 50.000 0.00 0.00 0.00 3.85
86 87 2.290577 CCAACAAGGAAAGGAGGAGGAG 60.291 54.545 0.00 0.00 41.22 3.69
87 88 1.705186 CCAACAAGGAAAGGAGGAGGA 59.295 52.381 0.00 0.00 41.22 3.71
88 89 1.705186 TCCAACAAGGAAAGGAGGAGG 59.295 52.381 0.00 0.00 45.65 4.30
90 91 7.723649 TCCTACTCCAACAAGGAAAGGAGGA 62.724 48.000 11.57 5.78 45.22 3.71
98 99 3.827817 TCTCTCCTACTCCAACAAGGA 57.172 47.619 0.00 0.00 46.75 3.36
99 100 3.196685 CCTTCTCTCCTACTCCAACAAGG 59.803 52.174 0.00 0.00 39.47 3.61
100 101 4.090090 TCCTTCTCTCCTACTCCAACAAG 58.910 47.826 0.00 0.00 0.00 3.16
101 102 4.127918 TCCTTCTCTCCTACTCCAACAA 57.872 45.455 0.00 0.00 0.00 2.83
102 103 3.827817 TCCTTCTCTCCTACTCCAACA 57.172 47.619 0.00 0.00 0.00 3.33
103 104 4.773149 TCTTTCCTTCTCTCCTACTCCAAC 59.227 45.833 0.00 0.00 0.00 3.77
104 105 5.011982 TCTTTCCTTCTCTCCTACTCCAA 57.988 43.478 0.00 0.00 0.00 3.53
105 106 4.570933 CCTCTTTCCTTCTCTCCTACTCCA 60.571 50.000 0.00 0.00 0.00 3.86
106 107 3.958147 CCTCTTTCCTTCTCTCCTACTCC 59.042 52.174 0.00 0.00 0.00 3.85
107 108 4.862371 TCCTCTTTCCTTCTCTCCTACTC 58.138 47.826 0.00 0.00 0.00 2.59
108 109 4.325816 CCTCCTCTTTCCTTCTCTCCTACT 60.326 50.000 0.00 0.00 0.00 2.57
109 110 3.958147 CCTCCTCTTTCCTTCTCTCCTAC 59.042 52.174 0.00 0.00 0.00 3.18
110 111 3.859248 TCCTCCTCTTTCCTTCTCTCCTA 59.141 47.826 0.00 0.00 0.00 2.94
111 112 2.657459 TCCTCCTCTTTCCTTCTCTCCT 59.343 50.000 0.00 0.00 0.00 3.69
112 113 3.031013 CTCCTCCTCTTTCCTTCTCTCC 58.969 54.545 0.00 0.00 0.00 3.71
113 114 3.954258 CTCTCCTCCTCTTTCCTTCTCTC 59.046 52.174 0.00 0.00 0.00 3.20
114 115 3.309848 CCTCTCCTCCTCTTTCCTTCTCT 60.310 52.174 0.00 0.00 0.00 3.10
115 116 3.031013 CCTCTCCTCCTCTTTCCTTCTC 58.969 54.545 0.00 0.00 0.00 2.87
116 117 2.292851 CCCTCTCCTCCTCTTTCCTTCT 60.293 54.545 0.00 0.00 0.00 2.85
117 118 2.115427 CCCTCTCCTCCTCTTTCCTTC 58.885 57.143 0.00 0.00 0.00 3.46
118 119 1.725182 TCCCTCTCCTCCTCTTTCCTT 59.275 52.381 0.00 0.00 0.00 3.36
119 120 1.398799 TCCCTCTCCTCCTCTTTCCT 58.601 55.000 0.00 0.00 0.00 3.36
120 121 2.255770 TTCCCTCTCCTCCTCTTTCC 57.744 55.000 0.00 0.00 0.00 3.13
121 122 3.054728 CCTTTTCCCTCTCCTCCTCTTTC 60.055 52.174 0.00 0.00 0.00 2.62
122 123 2.916269 CCTTTTCCCTCTCCTCCTCTTT 59.084 50.000 0.00 0.00 0.00 2.52
123 124 2.114506 TCCTTTTCCCTCTCCTCCTCTT 59.885 50.000 0.00 0.00 0.00 2.85
124 125 1.725182 TCCTTTTCCCTCTCCTCCTCT 59.275 52.381 0.00 0.00 0.00 3.69
125 126 2.255770 TCCTTTTCCCTCTCCTCCTC 57.744 55.000 0.00 0.00 0.00 3.71
126 127 2.743131 TTCCTTTTCCCTCTCCTCCT 57.257 50.000 0.00 0.00 0.00 3.69
127 128 3.562393 CCTTTTCCTTTTCCCTCTCCTCC 60.562 52.174 0.00 0.00 0.00 4.30
128 129 3.562393 CCCTTTTCCTTTTCCCTCTCCTC 60.562 52.174 0.00 0.00 0.00 3.71
129 130 2.380249 CCCTTTTCCTTTTCCCTCTCCT 59.620 50.000 0.00 0.00 0.00 3.69
130 131 2.557676 CCCCTTTTCCTTTTCCCTCTCC 60.558 54.545 0.00 0.00 0.00 3.71
131 132 2.557676 CCCCCTTTTCCTTTTCCCTCTC 60.558 54.545 0.00 0.00 0.00 3.20
132 133 1.433199 CCCCCTTTTCCTTTTCCCTCT 59.567 52.381 0.00 0.00 0.00 3.69
133 134 1.938585 CCCCCTTTTCCTTTTCCCTC 58.061 55.000 0.00 0.00 0.00 4.30
134 135 0.178903 GCCCCCTTTTCCTTTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
135 136 0.178903 AGCCCCCTTTTCCTTTTCCC 60.179 55.000 0.00 0.00 0.00 3.97
136 137 0.976641 CAGCCCCCTTTTCCTTTTCC 59.023 55.000 0.00 0.00 0.00 3.13
137 138 0.321671 GCAGCCCCCTTTTCCTTTTC 59.678 55.000 0.00 0.00 0.00 2.29
138 139 0.399806 TGCAGCCCCCTTTTCCTTTT 60.400 50.000 0.00 0.00 0.00 2.27
139 140 1.121407 GTGCAGCCCCCTTTTCCTTT 61.121 55.000 0.00 0.00 0.00 3.11
140 141 1.533994 GTGCAGCCCCCTTTTCCTT 60.534 57.895 0.00 0.00 0.00 3.36
141 142 2.118294 GTGCAGCCCCCTTTTCCT 59.882 61.111 0.00 0.00 0.00 3.36
142 143 2.997315 GGTGCAGCCCCCTTTTCC 60.997 66.667 4.03 0.00 0.00 3.13
151 152 4.284550 TGGACAAGGGGTGCAGCC 62.285 66.667 27.04 27.04 43.49 4.85
154 155 0.893270 CGAATTGGACAAGGGGTGCA 60.893 55.000 0.00 0.00 46.98 4.57
155 156 1.595093 CCGAATTGGACAAGGGGTGC 61.595 60.000 0.00 0.00 42.00 5.01
156 157 0.037590 TCCGAATTGGACAAGGGGTG 59.962 55.000 0.00 0.00 43.74 4.61
157 158 2.470311 TCCGAATTGGACAAGGGGT 58.530 52.632 0.00 0.00 43.74 4.95
166 167 1.224592 CCCCTCTGGTCCGAATTGG 59.775 63.158 0.00 0.00 40.09 3.16
167 168 4.963878 CCCCTCTGGTCCGAATTG 57.036 61.111 0.00 0.00 0.00 2.32
191 192 6.642707 ATTATGCGGGATCGGAAATAAAAA 57.357 33.333 0.00 0.00 40.75 1.94
192 193 6.642707 AATTATGCGGGATCGGAAATAAAA 57.357 33.333 0.00 0.00 40.75 1.52
193 194 6.442952 CAAATTATGCGGGATCGGAAATAAA 58.557 36.000 0.00 0.00 40.75 1.40
194 195 5.563867 GCAAATTATGCGGGATCGGAAATAA 60.564 40.000 0.00 0.00 46.87 1.40
195 196 4.083003 GCAAATTATGCGGGATCGGAAATA 60.083 41.667 0.00 0.00 46.87 1.40
196 197 3.305335 GCAAATTATGCGGGATCGGAAAT 60.305 43.478 0.00 0.00 46.87 2.17
197 198 2.034053 GCAAATTATGCGGGATCGGAAA 59.966 45.455 0.00 0.00 46.87 3.13
198 199 1.606668 GCAAATTATGCGGGATCGGAA 59.393 47.619 0.00 0.00 46.87 4.30
199 200 1.234821 GCAAATTATGCGGGATCGGA 58.765 50.000 0.00 0.00 46.87 4.55
200 201 3.773117 GCAAATTATGCGGGATCGG 57.227 52.632 0.00 0.00 46.87 4.18
209 210 0.380378 CCCACGTCCCGCAAATTATG 59.620 55.000 0.00 0.00 0.00 1.90
210 211 0.253610 TCCCACGTCCCGCAAATTAT 59.746 50.000 0.00 0.00 0.00 1.28
211 212 0.253610 ATCCCACGTCCCGCAAATTA 59.746 50.000 0.00 0.00 0.00 1.40
212 213 0.253610 TATCCCACGTCCCGCAAATT 59.746 50.000 0.00 0.00 0.00 1.82
213 214 0.472471 ATATCCCACGTCCCGCAAAT 59.528 50.000 0.00 0.00 0.00 2.32
214 215 1.069513 CTATATCCCACGTCCCGCAAA 59.930 52.381 0.00 0.00 0.00 3.68
215 216 0.677288 CTATATCCCACGTCCCGCAA 59.323 55.000 0.00 0.00 0.00 4.85
216 217 1.812686 GCTATATCCCACGTCCCGCA 61.813 60.000 0.00 0.00 0.00 5.69
217 218 1.080025 GCTATATCCCACGTCCCGC 60.080 63.158 0.00 0.00 0.00 6.13
218 219 0.038526 GTGCTATATCCCACGTCCCG 60.039 60.000 0.00 0.00 0.00 5.14
219 220 1.045407 TGTGCTATATCCCACGTCCC 58.955 55.000 0.00 0.00 34.77 4.46
220 221 2.563179 AGATGTGCTATATCCCACGTCC 59.437 50.000 17.60 6.69 44.90 4.79
221 222 3.944055 AGATGTGCTATATCCCACGTC 57.056 47.619 15.14 15.14 44.41 4.34
222 223 3.388024 ACAAGATGTGCTATATCCCACGT 59.612 43.478 1.27 1.27 34.77 4.49
223 224 3.995199 ACAAGATGTGCTATATCCCACG 58.005 45.455 0.00 0.00 34.77 4.94
224 225 6.699575 AAAACAAGATGTGCTATATCCCAC 57.300 37.500 0.00 0.07 0.00 4.61
248 249 2.602878 CGGCGTCTCTAGCAGTAAAAA 58.397 47.619 0.00 0.00 36.08 1.94
249 250 1.135199 CCGGCGTCTCTAGCAGTAAAA 60.135 52.381 6.01 0.00 36.08 1.52
250 251 0.454600 CCGGCGTCTCTAGCAGTAAA 59.545 55.000 6.01 0.00 36.08 2.01
251 252 0.393402 TCCGGCGTCTCTAGCAGTAA 60.393 55.000 6.01 0.00 36.08 2.24
252 253 0.814410 CTCCGGCGTCTCTAGCAGTA 60.814 60.000 6.01 0.00 36.08 2.74
253 254 2.045242 TCCGGCGTCTCTAGCAGT 60.045 61.111 6.01 0.00 36.08 4.40
254 255 1.377366 TTCTCCGGCGTCTCTAGCAG 61.377 60.000 6.01 0.00 36.08 4.24
255 256 0.752009 ATTCTCCGGCGTCTCTAGCA 60.752 55.000 6.01 0.00 36.08 3.49
256 257 1.069091 GTATTCTCCGGCGTCTCTAGC 60.069 57.143 6.01 0.00 0.00 3.42
257 258 2.496111 AGTATTCTCCGGCGTCTCTAG 58.504 52.381 6.01 0.00 0.00 2.43
258 259 2.634815 AGTATTCTCCGGCGTCTCTA 57.365 50.000 6.01 0.00 0.00 2.43
259 260 1.765230 AAGTATTCTCCGGCGTCTCT 58.235 50.000 6.01 0.00 0.00 3.10
260 261 2.580966 AAAGTATTCTCCGGCGTCTC 57.419 50.000 6.01 0.00 0.00 3.36
261 262 3.329929 AAAAAGTATTCTCCGGCGTCT 57.670 42.857 6.01 0.00 0.00 4.18
280 281 1.196911 TCTCCGGCGATCCCTAAAAA 58.803 50.000 9.30 0.00 0.00 1.94
281 282 1.196911 TTCTCCGGCGATCCCTAAAA 58.803 50.000 9.30 0.00 0.00 1.52
282 283 1.420430 ATTCTCCGGCGATCCCTAAA 58.580 50.000 9.30 0.00 0.00 1.85
283 284 1.891150 GTATTCTCCGGCGATCCCTAA 59.109 52.381 9.30 0.00 0.00 2.69
284 285 1.542492 GTATTCTCCGGCGATCCCTA 58.458 55.000 9.30 0.00 0.00 3.53
285 286 1.186267 GGTATTCTCCGGCGATCCCT 61.186 60.000 9.30 0.00 0.00 4.20
286 287 1.186267 AGGTATTCTCCGGCGATCCC 61.186 60.000 9.30 0.00 0.00 3.85
287 288 1.473278 CTAGGTATTCTCCGGCGATCC 59.527 57.143 9.30 0.00 0.00 3.36
288 289 1.473278 CCTAGGTATTCTCCGGCGATC 59.527 57.143 9.30 0.00 0.00 3.69
289 290 1.075050 TCCTAGGTATTCTCCGGCGAT 59.925 52.381 9.30 0.00 0.00 4.58
290 291 0.475475 TCCTAGGTATTCTCCGGCGA 59.525 55.000 9.30 0.00 0.00 5.54
291 292 0.597072 GTCCTAGGTATTCTCCGGCG 59.403 60.000 9.08 0.00 0.00 6.46
292 293 0.597072 CGTCCTAGGTATTCTCCGGC 59.403 60.000 9.08 0.00 0.00 6.13
293 294 2.152830 CTCGTCCTAGGTATTCTCCGG 58.847 57.143 9.08 0.00 0.00 5.14
294 295 3.068560 CTCTCGTCCTAGGTATTCTCCG 58.931 54.545 9.08 1.66 0.00 4.63
295 296 3.072768 TCCTCTCGTCCTAGGTATTCTCC 59.927 52.174 9.08 0.00 34.30 3.71
296 297 4.354893 TCCTCTCGTCCTAGGTATTCTC 57.645 50.000 9.08 0.00 34.30 2.87
297 298 5.074115 CAATCCTCTCGTCCTAGGTATTCT 58.926 45.833 9.08 0.00 34.30 2.40
298 299 5.071370 TCAATCCTCTCGTCCTAGGTATTC 58.929 45.833 9.08 0.00 34.30 1.75
299 300 5.063017 TCAATCCTCTCGTCCTAGGTATT 57.937 43.478 9.08 0.00 34.30 1.89
300 301 4.507691 CCTCAATCCTCTCGTCCTAGGTAT 60.508 50.000 9.08 0.00 34.30 2.73
301 302 3.181442 CCTCAATCCTCTCGTCCTAGGTA 60.181 52.174 9.08 0.00 34.30 3.08
302 303 2.423660 CCTCAATCCTCTCGTCCTAGGT 60.424 54.545 9.08 0.00 34.30 3.08
303 304 2.235016 CCTCAATCCTCTCGTCCTAGG 58.765 57.143 0.82 0.82 0.00 3.02
304 305 1.611491 GCCTCAATCCTCTCGTCCTAG 59.389 57.143 0.00 0.00 0.00 3.02
305 306 1.215673 AGCCTCAATCCTCTCGTCCTA 59.784 52.381 0.00 0.00 0.00 2.94
306 307 0.032615 AGCCTCAATCCTCTCGTCCT 60.033 55.000 0.00 0.00 0.00 3.85
307 308 0.103937 CAGCCTCAATCCTCTCGTCC 59.896 60.000 0.00 0.00 0.00 4.79
308 309 0.103937 CCAGCCTCAATCCTCTCGTC 59.896 60.000 0.00 0.00 0.00 4.20
309 310 0.616111 ACCAGCCTCAATCCTCTCGT 60.616 55.000 0.00 0.00 0.00 4.18
310 311 0.103937 GACCAGCCTCAATCCTCTCG 59.896 60.000 0.00 0.00 0.00 4.04
311 312 1.134551 GTGACCAGCCTCAATCCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
312 313 0.908198 GTGACCAGCCTCAATCCTCT 59.092 55.000 0.00 0.00 0.00 3.69
313 314 0.615331 TGTGACCAGCCTCAATCCTC 59.385 55.000 0.00 0.00 0.00 3.71
314 315 1.067295 TTGTGACCAGCCTCAATCCT 58.933 50.000 0.00 0.00 0.00 3.24
315 316 1.747355 CATTGTGACCAGCCTCAATCC 59.253 52.381 0.00 0.00 30.57 3.01
316 317 1.747355 CCATTGTGACCAGCCTCAATC 59.253 52.381 0.00 0.00 30.57 2.67
317 318 1.617804 CCCATTGTGACCAGCCTCAAT 60.618 52.381 0.00 0.00 32.44 2.57
318 319 0.251297 CCCATTGTGACCAGCCTCAA 60.251 55.000 0.00 0.00 0.00 3.02
340 341 6.267928 AGTGTGTGATGTTACTCCTAAGTTCT 59.732 38.462 0.00 0.00 36.92 3.01
366 367 6.920758 GTGCCACATAAACAAACTTGTATTGA 59.079 34.615 0.00 0.00 41.31 2.57
475 476 9.045223 GTGTCATGCAGTGATGTATTTATTAGA 57.955 33.333 0.00 0.00 39.48 2.10
490 491 5.089970 ACATGTATGTAGTGTCATGCAGT 57.910 39.130 0.00 0.00 41.86 4.40
555 556 7.217906 GGCAGAAACATAAGCTAGTAACCTAT 58.782 38.462 0.00 0.00 0.00 2.57
575 576 2.350895 CCGGTCACAATGGGCAGA 59.649 61.111 0.00 0.00 0.00 4.26
591 592 1.460273 GGATCTCGCCTCCTCAGACC 61.460 65.000 0.00 0.00 0.00 3.85
593 594 0.467106 CAGGATCTCGCCTCCTCAGA 60.467 60.000 0.00 0.00 41.29 3.27
624 625 1.605992 GTTTTAGGAGGGGACGGGG 59.394 63.158 0.00 0.00 0.00 5.73
767 769 2.826003 GGGGGTGTCGAGGGTTTGT 61.826 63.158 0.00 0.00 0.00 2.83
768 770 2.033602 GGGGGTGTCGAGGGTTTG 59.966 66.667 0.00 0.00 0.00 2.93
769 771 3.633116 CGGGGGTGTCGAGGGTTT 61.633 66.667 0.00 0.00 0.00 3.27
774 776 3.622060 AAATGGCGGGGGTGTCGAG 62.622 63.158 0.00 0.00 0.00 4.04
775 777 3.198953 AAAATGGCGGGGGTGTCGA 62.199 57.895 0.00 0.00 0.00 4.20
776 778 2.675075 AAAATGGCGGGGGTGTCG 60.675 61.111 0.00 0.00 0.00 4.35
846 848 3.003173 CCCACCCAGAGGAGCGAA 61.003 66.667 0.00 0.00 36.73 4.70
864 866 2.154427 GAAGAAACGCGACACCACCG 62.154 60.000 15.93 0.00 0.00 4.94
893 895 0.687354 GAGCCACCACCAGAGAAAGA 59.313 55.000 0.00 0.00 0.00 2.52
952 954 4.015406 CCCTAGGCGCACACACCA 62.015 66.667 10.83 0.00 0.00 4.17
1038 1040 3.691342 CCCAAGACGGACGCCTGA 61.691 66.667 0.00 0.00 36.56 3.86
1086 1088 0.794981 CGGAAGCAGAAGACGACGAG 60.795 60.000 0.00 0.00 0.00 4.18
1170 1172 3.880117 GCTCCTCCTTAGTCTTCCTCACT 60.880 52.174 0.00 0.00 0.00 3.41
1247 1262 6.810182 TCAAAACTATAAGTAACTGAGGCGAC 59.190 38.462 0.00 0.00 0.00 5.19
1286 1303 6.817184 AGCATGTTAATTAGACGGTACAGAT 58.183 36.000 0.00 0.00 0.00 2.90
1313 1445 0.954452 GGCACCAACAACCAGAAGAG 59.046 55.000 0.00 0.00 0.00 2.85
1332 1464 5.649782 ATCCTACTGGCAACTTCATTTTG 57.350 39.130 0.00 0.00 37.61 2.44
1375 1507 3.547746 AGTAACAAACAGAGGGCGAAAA 58.452 40.909 0.00 0.00 0.00 2.29
1420 1566 4.489810 TGCAAAACAAACTACCAACAGTG 58.510 39.130 0.00 0.00 0.00 3.66
1479 1630 7.451501 TCATGATTCTAAGAAACAATGCACA 57.548 32.000 0.00 0.00 0.00 4.57
1481 1632 7.971722 CACATCATGATTCTAAGAAACAATGCA 59.028 33.333 5.16 0.00 0.00 3.96
1507 1658 9.060347 TCATCAAAATCAAAGAGCATATAGGTC 57.940 33.333 0.00 0.00 45.07 3.85
1521 1672 7.041916 GCCACAAGAAAACATCATCAAAATCAA 60.042 33.333 0.00 0.00 0.00 2.57
1540 1692 0.036952 AGTCTGGATCACGCCACAAG 60.037 55.000 0.00 0.00 33.52 3.16
1554 1707 7.009631 CAGAACAGTGGATAAAATCGTAGTCTG 59.990 40.741 0.00 0.00 0.00 3.51
1621 1777 3.496507 GCTCAAGAGAAAGACACACTTCC 59.503 47.826 0.32 0.00 37.93 3.46
1679 1836 5.745294 CAGAGAAAACTGGTTTGTTCACATG 59.255 40.000 0.00 0.00 34.64 3.21
1682 1839 5.310720 ACAGAGAAAACTGGTTTGTTCAC 57.689 39.130 0.00 0.00 41.59 3.18
1686 1843 5.975693 TGAAACAGAGAAAACTGGTTTGT 57.024 34.783 0.00 0.00 46.02 2.83
1700 1857 6.614160 CACAAAGCACATATGATGAAACAGA 58.386 36.000 10.38 0.00 0.00 3.41
1771 1930 2.091830 ACCCGATACCTGAGATGAGACA 60.092 50.000 0.00 0.00 0.00 3.41
1779 1938 3.670625 TGTTTGAAACCCGATACCTGAG 58.329 45.455 5.50 0.00 0.00 3.35
1814 1973 5.541845 TCCTTGTGTGTAAGATTGACTGAG 58.458 41.667 0.00 0.00 0.00 3.35
1889 2048 1.611936 GGGCCAAGAACTCTGTTCTCC 60.612 57.143 4.39 9.81 0.00 3.71
2019 2178 5.885230 TCTTTGTTGCCAAGATACTCATG 57.115 39.130 0.00 0.00 0.00 3.07
2029 2188 2.694628 AGCACAGAATCTTTGTTGCCAA 59.305 40.909 0.00 0.00 0.00 4.52
2044 2203 0.861837 GTCAGACGTTTCCAGCACAG 59.138 55.000 0.00 0.00 0.00 3.66
2056 2215 2.084610 TGCTTCATCCTTGTCAGACG 57.915 50.000 0.00 0.00 0.00 4.18
2084 2243 4.275689 TGAGTGCTGATGAAATTCGTTTGT 59.724 37.500 0.00 0.00 0.00 2.83
2120 2279 7.384524 ACCAGATTCCAAGATATCAGATGAA 57.615 36.000 5.32 2.85 0.00 2.57
2219 2378 1.152860 TTTCCCACGCAAGGCTTCA 60.153 52.632 0.00 0.00 46.39 3.02
2278 2437 7.313646 CAAATCAGAAACATGAGCAAGAGATT 58.686 34.615 0.00 0.00 31.44 2.40
2309 2468 4.320494 CCTGCGTTGTTGAGCTTAATTTCT 60.320 41.667 0.00 0.00 0.00 2.52
2316 2475 1.898574 CCCCTGCGTTGTTGAGCTT 60.899 57.895 0.00 0.00 0.00 3.74
2327 2486 2.593725 CCATGCTCATCCCCTGCG 60.594 66.667 0.00 0.00 0.00 5.18
2344 2503 2.488153 GTGATGCTACTGGTTGTTTCCC 59.512 50.000 0.00 0.00 0.00 3.97
2376 2535 3.770388 ACACTAGGTTCTAGGGAAAGAGC 59.230 47.826 10.77 0.00 32.81 4.09
2386 2545 7.781548 GTTTGAGAAACAACACTAGGTTCTA 57.218 36.000 0.00 0.00 41.04 2.10
2475 2637 6.711277 AGTAAACAATAGCCTCATCAACAGA 58.289 36.000 0.00 0.00 0.00 3.41
2497 2659 5.705441 TGAAGAACGCCATTATTTTCTGAGT 59.295 36.000 0.00 0.00 0.00 3.41
2551 2713 3.181445 ACTTGCTGTTTCAGGTACCATCA 60.181 43.478 15.94 4.68 31.21 3.07
2555 2717 4.575885 TGATACTTGCTGTTTCAGGTACC 58.424 43.478 2.73 2.73 32.96 3.34
2620 2782 3.826524 TCCAATTGAGTTGCAGGTGTTA 58.173 40.909 7.12 0.00 36.46 2.41
2637 2799 8.052748 ACTTGTATTTGAGGTATAAGCATCCAA 58.947 33.333 0.00 0.00 0.00 3.53
2654 2816 8.606040 ATTTTATTGTTGCTGCACTTGTATTT 57.394 26.923 0.00 0.00 0.00 1.40
2676 2838 4.338012 TGATCAATGGACACAGCTGATTT 58.662 39.130 23.35 3.09 34.81 2.17
2730 2892 0.869730 CGTTGTTCGTTAGGGTTGGG 59.130 55.000 0.00 0.00 34.52 4.12
2734 2896 3.126073 GACTTTCGTTGTTCGTTAGGGT 58.874 45.455 0.00 0.00 40.80 4.34
2773 2935 3.778265 ACCTTTGTATCCATTGCTGGTT 58.222 40.909 0.00 0.00 43.61 3.67
2891 3053 4.795268 ACGTTGATACAGGCTATGATACG 58.205 43.478 0.00 0.00 0.00 3.06
2902 3064 8.864024 CATAAAGGCTATGATACGTTGATACAG 58.136 37.037 0.00 0.00 0.00 2.74
2903 3065 7.817478 CCATAAAGGCTATGATACGTTGATACA 59.183 37.037 0.00 0.00 0.00 2.29
2904 3066 8.033038 TCCATAAAGGCTATGATACGTTGATAC 58.967 37.037 0.00 0.00 37.29 2.24
2905 3067 8.129496 TCCATAAAGGCTATGATACGTTGATA 57.871 34.615 0.00 0.00 37.29 2.15
2906 3068 7.004555 TCCATAAAGGCTATGATACGTTGAT 57.995 36.000 0.00 0.00 37.29 2.57
2907 3069 6.413783 TCCATAAAGGCTATGATACGTTGA 57.586 37.500 0.00 0.00 37.29 3.18
2908 3070 7.387673 TGATTCCATAAAGGCTATGATACGTTG 59.612 37.037 0.00 0.00 37.29 4.10
2909 3071 7.387948 GTGATTCCATAAAGGCTATGATACGTT 59.612 37.037 0.00 0.00 37.29 3.99
2910 3072 6.874134 GTGATTCCATAAAGGCTATGATACGT 59.126 38.462 0.00 0.00 37.29 3.57
2911 3073 7.099764 AGTGATTCCATAAAGGCTATGATACG 58.900 38.462 0.00 0.00 37.29 3.06
2912 3074 8.854614 AAGTGATTCCATAAAGGCTATGATAC 57.145 34.615 0.00 0.00 37.29 2.24
2914 3076 9.678260 GATAAGTGATTCCATAAAGGCTATGAT 57.322 33.333 0.00 0.00 37.29 2.45
2915 3077 8.884323 AGATAAGTGATTCCATAAAGGCTATGA 58.116 33.333 0.00 0.00 37.29 2.15
2916 3078 9.512588 AAGATAAGTGATTCCATAAAGGCTATG 57.487 33.333 0.00 0.00 37.29 2.23
2917 3079 9.732130 GAAGATAAGTGATTCCATAAAGGCTAT 57.268 33.333 0.00 0.00 37.29 2.97
2918 3080 8.157476 GGAAGATAAGTGATTCCATAAAGGCTA 58.843 37.037 0.00 0.00 41.78 3.93
2919 3081 7.001073 GGAAGATAAGTGATTCCATAAAGGCT 58.999 38.462 0.00 0.00 41.78 4.58
2920 3082 6.772716 TGGAAGATAAGTGATTCCATAAAGGC 59.227 38.462 1.84 0.00 45.76 4.35
2953 3115 5.895636 ACAGAACAGTGTCAGAGAGATAG 57.104 43.478 0.00 0.00 0.00 2.08
2967 3132 9.926751 CATAGCATAAATCAGTAAACAGAACAG 57.073 33.333 0.00 0.00 0.00 3.16
2988 3153 2.030946 GTGTGCCATTCGAGAACATAGC 59.969 50.000 0.00 0.00 0.00 2.97
2995 3160 0.392706 ACACAGTGTGCCATTCGAGA 59.607 50.000 23.21 0.00 36.98 4.04
3021 3186 1.070601 ACAAGCAAAAATGGTCCAGCC 59.929 47.619 0.00 0.00 37.90 4.85
3022 3187 2.531522 ACAAGCAAAAATGGTCCAGC 57.468 45.000 0.00 0.00 0.00 4.85
3023 3188 8.776376 ATAAATTACAAGCAAAAATGGTCCAG 57.224 30.769 0.00 0.00 0.00 3.86
3106 3273 2.828520 TGTGGTTGTCTTCCTTTTGCAA 59.171 40.909 0.00 0.00 0.00 4.08
3118 3285 2.132762 CTCTACCGTGTTGTGGTTGTC 58.867 52.381 0.00 0.00 40.96 3.18
3139 3306 9.903682 TGATTTCTTGAATTCACTTTCATCTTC 57.096 29.630 7.89 0.00 35.64 2.87
3183 3350 2.734673 GCTTGCCTCACGCTCTTCG 61.735 63.158 0.00 0.00 45.38 3.79
3312 3849 9.185680 CTTACCTAATAAGTTATGGCCTTTTGT 57.814 33.333 3.32 0.00 36.30 2.83
3497 4047 3.399330 CTGTTCCGAAGCTCCACTTTTA 58.601 45.455 0.00 0.00 39.29 1.52
3525 4075 5.402568 GCATGCTATTTTGCAGATTGATCAG 59.597 40.000 11.37 0.00 46.71 2.90
3641 4191 3.326588 TGAAAATGTTCGGAGGGAGAGAA 59.673 43.478 0.00 0.00 36.46 2.87
3678 4228 6.806739 GTGGTTTCTATGAAATGTTACTTGGC 59.193 38.462 0.00 0.00 0.00 4.52
3679 4229 7.807907 GTGTGGTTTCTATGAAATGTTACTTGG 59.192 37.037 0.00 0.00 0.00 3.61
3703 4253 6.020281 TGCAAAAATGTTACACGCTAAAAGTG 60.020 34.615 0.00 0.00 44.57 3.16
3704 4254 6.037098 TGCAAAAATGTTACACGCTAAAAGT 58.963 32.000 0.00 0.00 0.00 2.66
3799 4356 1.610522 ACATTGTTGAGCAGCCAGTTC 59.389 47.619 0.00 0.00 0.00 3.01
3872 4429 7.255836 GCAACCAGAAAAGTAAATAGAAAGGGT 60.256 37.037 0.00 0.00 0.00 4.34
3885 4442 7.346751 TCAAGATTTAAGCAACCAGAAAAGT 57.653 32.000 0.00 0.00 0.00 2.66
3905 4462 5.009911 TCACAGTCCAATGAACCAAATCAAG 59.990 40.000 0.00 0.00 32.06 3.02
3909 4466 5.776716 AGAATCACAGTCCAATGAACCAAAT 59.223 36.000 0.00 0.00 0.00 2.32
3911 4468 4.728772 AGAATCACAGTCCAATGAACCAA 58.271 39.130 0.00 0.00 0.00 3.67
4142 4727 6.795144 TCAATCATTTGGCATGGTTAATCT 57.205 33.333 0.00 0.00 33.44 2.40
4184 4769 5.207768 GCTGCATTGTTGAATATACGGAAG 58.792 41.667 0.00 0.00 0.00 3.46
4185 4770 4.637977 TGCTGCATTGTTGAATATACGGAA 59.362 37.500 0.00 0.00 0.00 4.30
4186 4771 4.195416 TGCTGCATTGTTGAATATACGGA 58.805 39.130 0.00 0.00 0.00 4.69
4187 4772 4.550577 TGCTGCATTGTTGAATATACGG 57.449 40.909 0.00 0.00 0.00 4.02
4188 4773 5.622448 GTCATGCTGCATTGTTGAATATACG 59.378 40.000 13.38 0.00 0.00 3.06
4189 4774 5.916883 GGTCATGCTGCATTGTTGAATATAC 59.083 40.000 13.38 0.00 0.00 1.47
4329 4914 4.211125 TCACTCATTTTGCCCACAACTTA 58.789 39.130 0.00 0.00 34.87 2.24
4402 4987 2.450609 AAGCGCTTCTCGTTTCCTAA 57.549 45.000 18.98 0.00 36.97 2.69
4517 5105 4.464951 ACCAAACGATACATCTGGACTACA 59.535 41.667 0.00 0.00 0.00 2.74
4523 5111 4.253685 AGTTGACCAAACGATACATCTGG 58.746 43.478 0.00 0.00 44.04 3.86
4569 5157 5.077564 TGAGTACTTCTCTAGAGTTGGCAA 58.922 41.667 19.21 0.00 43.13 4.52
4693 5281 8.193438 GCTTCCATAATAATTGCAGAAAAGTCT 58.807 33.333 0.00 0.00 32.85 3.24
4694 5282 8.193438 AGCTTCCATAATAATTGCAGAAAAGTC 58.807 33.333 0.00 0.00 0.00 3.01
4708 5296 5.445964 GGGAAGGAACAAGCTTCCATAATA 58.554 41.667 3.68 0.00 46.11 0.98
4733 5321 1.282248 TAAACGCTGCTCGCTGTGAC 61.282 55.000 14.78 0.00 43.23 3.67
4734 5322 1.006688 TAAACGCTGCTCGCTGTGA 60.007 52.632 14.78 0.00 43.23 3.58
4737 5325 1.900585 TTGCTAAACGCTGCTCGCTG 61.901 55.000 0.00 0.00 43.23 5.18
4738 5326 1.667830 TTGCTAAACGCTGCTCGCT 60.668 52.632 0.00 0.00 43.23 4.93
4739 5327 1.509995 GTTGCTAAACGCTGCTCGC 60.510 57.895 0.00 0.00 43.23 5.03
4740 5328 1.132640 GGTTGCTAAACGCTGCTCG 59.867 57.895 0.00 0.00 45.38 5.03
4870 5458 3.398406 TGCGAGCATTCAAGTGTAAAGA 58.602 40.909 0.00 0.00 0.00 2.52
5009 5730 4.816392 TGCAAGAGCGTTTAGATCACTAA 58.184 39.130 0.00 0.00 46.23 2.24
5101 6982 5.801947 CAGGCATAAACTTGAACTAATGCAC 59.198 40.000 7.33 0.00 41.08 4.57
5104 6985 5.105797 TGGCAGGCATAAACTTGAACTAATG 60.106 40.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.