Multiple sequence alignment - TraesCS5B01G104200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G104200 chr5B 100.000 3155 0 0 1 3155 139151593 139154747 0.000000e+00 5827.0
1 TraesCS5B01G104200 chr5B 96.143 726 27 1 2431 3155 474269159 474269884 0.000000e+00 1184.0
2 TraesCS5B01G104200 chr5B 95.336 729 31 3 2429 3155 612949081 612949808 0.000000e+00 1155.0
3 TraesCS5B01G104200 chr5B 90.152 132 7 6 649 774 296842865 296842996 1.950000e-37 167.0
4 TraesCS5B01G104200 chr5B 100.000 36 0 0 797 832 139152142 139152177 2.030000e-07 67.6
5 TraesCS5B01G104200 chr5B 100.000 36 0 0 550 585 139152389 139152424 2.030000e-07 67.6
6 TraesCS5B01G104200 chr5A 92.044 1458 60 24 859 2285 141031222 141032654 0.000000e+00 1999.0
7 TraesCS5B01G104200 chr5A 92.973 555 25 4 1 551 141027445 141027989 0.000000e+00 797.0
8 TraesCS5B01G104200 chr5D 92.400 1421 57 16 886 2285 126261068 126262458 0.000000e+00 1978.0
9 TraesCS5B01G104200 chr5D 92.936 722 47 3 2438 3155 65105430 65104709 0.000000e+00 1048.0
10 TraesCS5B01G104200 chr5D 95.980 398 14 2 1 397 126259831 126260227 0.000000e+00 645.0
11 TraesCS5B01G104200 chr5D 94.040 151 9 0 401 551 126260319 126260469 2.450000e-56 230.0
12 TraesCS5B01G104200 chr5D 81.481 162 11 8 2285 2431 88727210 88727367 7.150000e-22 115.0
13 TraesCS5B01G104200 chr5D 96.970 33 0 1 2283 2314 312091067 312091099 2.000000e-03 54.7
14 TraesCS5B01G104200 chr7B 95.694 720 29 2 2437 3155 144629874 144630592 0.000000e+00 1157.0
15 TraesCS5B01G104200 chr7B 94.406 143 4 2 635 773 334803287 334803145 1.910000e-52 217.0
16 TraesCS5B01G104200 chr7B 93.571 140 6 1 635 771 443731740 443731879 4.120000e-49 206.0
17 TraesCS5B01G104200 chr7B 92.254 142 7 2 635 772 115229037 115229178 6.900000e-47 198.0
18 TraesCS5B01G104200 chr7B 92.857 140 5 3 637 771 741470376 741470515 6.900000e-47 198.0
19 TraesCS5B01G104200 chr7B 97.561 41 1 0 592 632 443731675 443731715 1.570000e-08 71.3
20 TraesCS5B01G104200 chr7B 88.889 54 6 0 2285 2338 242964248 242964301 2.030000e-07 67.6
21 TraesCS5B01G104200 chr7B 85.455 55 4 3 2286 2338 642370104 642370156 2.000000e-03 54.7
22 TraesCS5B01G104200 chr6B 95.568 722 31 1 2435 3155 695841993 695842714 0.000000e+00 1155.0
23 TraesCS5B01G104200 chr6B 92.958 142 6 2 635 772 5861101 5861242 1.480000e-48 204.0
24 TraesCS5B01G104200 chr6B 92.188 128 4 4 649 771 706233065 706233191 3.230000e-40 176.0
25 TraesCS5B01G104200 chr4B 95.921 711 28 1 2435 3144 53558537 53557827 0.000000e+00 1151.0
26 TraesCS5B01G104200 chr4B 92.473 186 8 4 592 773 413853418 413853601 8.680000e-66 261.0
27 TraesCS5B01G104200 chr2B 95.556 720 30 2 2437 3155 230219452 230220170 0.000000e+00 1151.0
28 TraesCS5B01G104200 chr2B 91.216 148 8 5 635 777 784646656 784646803 2.480000e-46 196.0
29 TraesCS5B01G104200 chr2B 91.304 115 6 4 649 759 122749232 122749118 1.520000e-33 154.0
30 TraesCS5B01G104200 chr2B 86.667 90 5 6 2331 2415 256102711 256102624 3.350000e-15 93.5
31 TraesCS5B01G104200 chr2B 83.019 106 7 8 2332 2432 435817658 435817559 5.610000e-13 86.1
32 TraesCS5B01G104200 chr2B 91.071 56 1 3 2285 2338 466749530 466749583 4.370000e-09 73.1
33 TraesCS5B01G104200 chr3D 92.798 722 48 3 2438 3155 512695850 512695129 0.000000e+00 1042.0
34 TraesCS5B01G104200 chr3D 81.250 160 11 8 2287 2431 359726610 359726765 9.250000e-21 111.0
35 TraesCS5B01G104200 chr4D 91.010 723 57 7 2440 3155 489154899 489155620 0.000000e+00 968.0
36 TraesCS5B01G104200 chr4D 80.000 160 13 7 2287 2431 325768381 325768536 2.000000e-17 100.0
37 TraesCS5B01G104200 chr4D 80.000 155 16 5 2292 2431 370201666 370201820 2.000000e-17 100.0
38 TraesCS5B01G104200 chr3A 76.458 463 88 13 1083 1536 80433385 80432935 6.810000e-57 231.0
39 TraesCS5B01G104200 chr3A 87.500 56 3 3 2285 2338 557282237 557282184 9.450000e-06 62.1
40 TraesCS5B01G104200 chr3B 91.549 142 6 4 635 771 783335616 783335476 1.160000e-44 191.0
41 TraesCS5B01G104200 chr3B 88.462 156 12 4 635 785 737346863 737346709 1.930000e-42 183.0
42 TraesCS5B01G104200 chr7D 91.270 126 7 2 652 773 2879097 2879222 5.410000e-38 169.0
43 TraesCS5B01G104200 chr7D 89.286 56 2 3 2285 2338 94237567 94237514 2.030000e-07 67.6
44 TraesCS5B01G104200 chr7D 88.136 59 3 3 2282 2338 345260370 345260426 2.030000e-07 67.6
45 TraesCS5B01G104200 chr1B 89.516 124 7 3 649 772 395060506 395060389 5.450000e-33 152.0
46 TraesCS5B01G104200 chr1B 87.069 116 9 5 649 764 533860649 533860758 3.300000e-25 126.0
47 TraesCS5B01G104200 chr1B 89.286 56 2 3 2285 2338 84715467 84715414 2.030000e-07 67.6
48 TraesCS5B01G104200 chr7A 81.013 158 11 8 2289 2431 118753698 118753545 1.200000e-19 108.0
49 TraesCS5B01G104200 chr2D 81.250 144 8 12 2283 2409 220192472 220192613 7.200000e-17 99.0
50 TraesCS5B01G104200 chr2D 89.286 56 2 3 2285 2338 374189964 374190017 2.030000e-07 67.6
51 TraesCS5B01G104200 chr4A 80.741 135 16 5 2301 2431 52367948 52367820 2.590000e-16 97.1
52 TraesCS5B01G104200 chrUn 95.556 45 2 0 592 636 293080913 293080957 4.370000e-09 73.1
53 TraesCS5B01G104200 chr2A 86.567 67 5 3 2285 2349 227391076 227391012 1.570000e-08 71.3
54 TraesCS5B01G104200 chr6D 89.286 56 2 3 2285 2338 60928160 60928107 2.030000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G104200 chr5B 139151593 139154747 3154 False 1987.4 5827 100.0000 1 3155 3 chr5B.!!$F4 3154
1 TraesCS5B01G104200 chr5B 474269159 474269884 725 False 1184.0 1184 96.1430 2431 3155 1 chr5B.!!$F2 724
2 TraesCS5B01G104200 chr5B 612949081 612949808 727 False 1155.0 1155 95.3360 2429 3155 1 chr5B.!!$F3 726
3 TraesCS5B01G104200 chr5A 141027445 141032654 5209 False 1398.0 1999 92.5085 1 2285 2 chr5A.!!$F1 2284
4 TraesCS5B01G104200 chr5D 65104709 65105430 721 True 1048.0 1048 92.9360 2438 3155 1 chr5D.!!$R1 717
5 TraesCS5B01G104200 chr5D 126259831 126262458 2627 False 951.0 1978 94.1400 1 2285 3 chr5D.!!$F3 2284
6 TraesCS5B01G104200 chr7B 144629874 144630592 718 False 1157.0 1157 95.6940 2437 3155 1 chr7B.!!$F2 718
7 TraesCS5B01G104200 chr6B 695841993 695842714 721 False 1155.0 1155 95.5680 2435 3155 1 chr6B.!!$F2 720
8 TraesCS5B01G104200 chr4B 53557827 53558537 710 True 1151.0 1151 95.9210 2435 3144 1 chr4B.!!$R1 709
9 TraesCS5B01G104200 chr2B 230219452 230220170 718 False 1151.0 1151 95.5560 2437 3155 1 chr2B.!!$F1 718
10 TraesCS5B01G104200 chr3D 512695129 512695850 721 True 1042.0 1042 92.7980 2438 3155 1 chr3D.!!$R1 717
11 TraesCS5B01G104200 chr4D 489154899 489155620 721 False 968.0 968 91.0100 2440 3155 1 chr4D.!!$F3 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 698 0.463204 ATCCTGATCTGCAGTCACGG 59.537 55.0 14.67 16.95 43.33 4.94 F
1505 4829 0.033011 AGTACCAGATCACCTCGCCT 60.033 55.0 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 4909 0.395311 TCGATCCTTACGCACCTCCT 60.395 55.000 0.00 0.00 0.00 3.69 R
2433 5772 2.033675 GGGTCAAAACACGAAATTCGGT 59.966 45.455 19.95 11.44 45.59 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 192 7.112779 CCTAAAGATGAACTGTAGGTTGGAAT 58.887 38.462 0.00 0.00 46.43 3.01
466 568 2.827921 AGCAGATTTGGTGTTGATTCCC 59.172 45.455 0.00 0.00 32.86 3.97
526 628 6.373005 TGAGTGAATCTAATCCCTTCAACA 57.627 37.500 0.00 0.00 31.21 3.33
551 653 1.459450 AACGGCCACGAAGCAATTAT 58.541 45.000 2.24 0.00 44.60 1.28
552 654 2.319136 ACGGCCACGAAGCAATTATA 57.681 45.000 2.24 0.00 44.60 0.98
553 655 2.210116 ACGGCCACGAAGCAATTATAG 58.790 47.619 2.24 0.00 44.60 1.31
554 656 2.159014 ACGGCCACGAAGCAATTATAGA 60.159 45.455 2.24 0.00 44.60 1.98
555 657 2.476619 CGGCCACGAAGCAATTATAGAG 59.523 50.000 2.24 0.00 44.60 2.43
556 658 2.224314 GGCCACGAAGCAATTATAGAGC 59.776 50.000 0.00 0.00 0.00 4.09
557 659 2.872245 GCCACGAAGCAATTATAGAGCA 59.128 45.455 0.00 0.00 0.00 4.26
558 660 3.499918 GCCACGAAGCAATTATAGAGCAT 59.500 43.478 0.00 0.00 0.00 3.79
559 661 4.690748 GCCACGAAGCAATTATAGAGCATA 59.309 41.667 0.00 0.00 0.00 3.14
560 662 5.179368 GCCACGAAGCAATTATAGAGCATAA 59.821 40.000 0.00 0.00 33.62 1.90
561 663 6.293407 GCCACGAAGCAATTATAGAGCATAAA 60.293 38.462 0.00 0.00 32.84 1.40
562 664 7.573843 GCCACGAAGCAATTATAGAGCATAAAT 60.574 37.037 0.00 0.00 32.84 1.40
563 665 8.292448 CCACGAAGCAATTATAGAGCATAAATT 58.708 33.333 0.00 0.00 32.84 1.82
576 678 6.951971 AGAGCATAAATTAGTCAAGAGTGGT 58.048 36.000 0.00 0.00 0.00 4.16
577 679 8.079211 AGAGCATAAATTAGTCAAGAGTGGTA 57.921 34.615 0.00 0.00 0.00 3.25
578 680 8.709308 AGAGCATAAATTAGTCAAGAGTGGTAT 58.291 33.333 0.00 0.00 0.00 2.73
579 681 8.894768 AGCATAAATTAGTCAAGAGTGGTATC 57.105 34.615 0.00 0.00 0.00 2.24
580 682 7.934120 AGCATAAATTAGTCAAGAGTGGTATCC 59.066 37.037 0.00 0.00 0.00 2.59
581 683 7.934120 GCATAAATTAGTCAAGAGTGGTATCCT 59.066 37.037 0.00 0.00 0.00 3.24
582 684 9.265901 CATAAATTAGTCAAGAGTGGTATCCTG 57.734 37.037 0.00 0.00 0.00 3.86
583 685 7.496346 AAATTAGTCAAGAGTGGTATCCTGA 57.504 36.000 0.00 0.00 0.00 3.86
584 686 7.682787 AATTAGTCAAGAGTGGTATCCTGAT 57.317 36.000 0.00 0.00 0.00 2.90
585 687 6.716934 TTAGTCAAGAGTGGTATCCTGATC 57.283 41.667 0.00 0.00 0.00 2.92
586 688 4.877773 AGTCAAGAGTGGTATCCTGATCT 58.122 43.478 0.00 0.00 0.00 2.75
587 689 4.648762 AGTCAAGAGTGGTATCCTGATCTG 59.351 45.833 0.00 0.00 0.00 2.90
588 690 3.386078 TCAAGAGTGGTATCCTGATCTGC 59.614 47.826 0.00 0.00 0.00 4.26
589 691 3.037851 AGAGTGGTATCCTGATCTGCA 57.962 47.619 0.00 0.00 0.00 4.41
590 692 2.964464 AGAGTGGTATCCTGATCTGCAG 59.036 50.000 7.63 7.63 44.49 4.41
591 693 2.697751 GAGTGGTATCCTGATCTGCAGT 59.302 50.000 14.67 0.42 43.33 4.40
592 694 2.697751 AGTGGTATCCTGATCTGCAGTC 59.302 50.000 14.67 11.14 43.33 3.51
593 695 2.432146 GTGGTATCCTGATCTGCAGTCA 59.568 50.000 14.67 15.03 43.33 3.41
594 696 2.432146 TGGTATCCTGATCTGCAGTCAC 59.568 50.000 14.67 7.07 43.33 3.67
595 697 2.544694 GGTATCCTGATCTGCAGTCACG 60.545 54.545 14.67 10.46 43.33 4.35
596 698 0.463204 ATCCTGATCTGCAGTCACGG 59.537 55.000 14.67 16.95 43.33 4.94
597 699 1.153489 CCTGATCTGCAGTCACGGG 60.153 63.158 14.67 15.63 43.33 5.28
598 700 1.812922 CTGATCTGCAGTCACGGGC 60.813 63.158 14.67 0.00 39.85 6.13
599 701 2.265739 GATCTGCAGTCACGGGCA 59.734 61.111 14.67 0.00 38.52 5.36
603 705 4.994471 TGCAGTCACGGGCAGCAG 62.994 66.667 0.00 0.00 34.58 4.24
651 753 2.807895 GCGCGAGAACGGCAAGTA 60.808 61.111 12.10 0.00 40.15 2.24
652 754 3.067846 GCGCGAGAACGGCAAGTAC 62.068 63.158 12.10 0.00 40.15 2.73
653 755 2.774951 CGCGAGAACGGCAAGTACG 61.775 63.158 0.00 0.00 40.15 3.67
654 756 3.067846 GCGAGAACGGCAAGTACGC 62.068 63.158 0.00 0.00 40.41 4.42
678 780 4.048470 GCCACCTTCCCTGGGGAC 62.048 72.222 14.00 0.00 45.11 4.46
703 805 4.021925 GCTTCGCCTGTGTCCCCT 62.022 66.667 0.00 0.00 0.00 4.79
704 806 2.266055 CTTCGCCTGTGTCCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
705 807 3.316573 CTTCGCCTGTGTCCCCTCC 62.317 68.421 0.00 0.00 0.00 4.30
759 861 2.580276 CTGGCGCGGTTAGGGTTA 59.420 61.111 8.83 0.00 34.93 2.85
760 862 1.520787 CTGGCGCGGTTAGGGTTAG 60.521 63.158 8.83 0.00 34.93 2.34
761 863 2.202974 GGCGCGGTTAGGGTTAGG 60.203 66.667 8.83 0.00 34.93 2.69
762 864 2.202974 GCGCGGTTAGGGTTAGGG 60.203 66.667 8.83 0.00 34.93 3.53
763 865 2.502577 CGCGGTTAGGGTTAGGGG 59.497 66.667 0.00 0.00 0.00 4.79
764 866 2.191375 GCGGTTAGGGTTAGGGGC 59.809 66.667 0.00 0.00 0.00 5.80
765 867 2.502577 CGGTTAGGGTTAGGGGCG 59.497 66.667 0.00 0.00 0.00 6.13
766 868 2.913501 GGTTAGGGTTAGGGGCGG 59.086 66.667 0.00 0.00 0.00 6.13
767 869 2.749584 GGTTAGGGTTAGGGGCGGG 61.750 68.421 0.00 0.00 0.00 6.13
768 870 2.367242 TTAGGGTTAGGGGCGGGG 60.367 66.667 0.00 0.00 0.00 5.73
769 871 2.958365 TTAGGGTTAGGGGCGGGGA 61.958 63.158 0.00 0.00 0.00 4.81
770 872 2.902069 TTAGGGTTAGGGGCGGGGAG 62.902 65.000 0.00 0.00 0.00 4.30
782 884 4.416738 GGGGAGGGCTGCAGTCAC 62.417 72.222 21.89 13.19 0.00 3.67
783 885 4.416738 GGGAGGGCTGCAGTCACC 62.417 72.222 21.89 21.16 0.00 4.02
784 886 3.325753 GGAGGGCTGCAGTCACCT 61.326 66.667 21.89 21.67 35.67 4.00
785 887 1.990060 GGAGGGCTGCAGTCACCTA 60.990 63.158 21.89 0.00 32.42 3.08
802 904 9.263538 CAGTCACCTACAGTACTTACTATAGAG 57.736 40.741 6.78 0.00 35.80 2.43
842 1206 9.653516 AGAGTGGTATCCTGATTGATATATAGG 57.346 37.037 0.00 0.00 30.37 2.57
877 4139 4.161377 AGACTAGCCTGAAGAGTTGGAATC 59.839 45.833 0.00 0.00 0.00 2.52
882 4144 3.012518 CCTGAAGAGTTGGAATCGCATT 58.987 45.455 0.00 0.00 0.00 3.56
895 4157 4.201618 GGAATCGCATTGCAAAGCTTAAAC 60.202 41.667 22.79 10.90 0.00 2.01
909 4201 2.722100 GCTTAAACGAGCGACTTCTTGC 60.722 50.000 0.00 0.00 32.23 4.01
911 4203 1.228657 AAACGAGCGACTTCTTGCCC 61.229 55.000 0.00 0.00 0.00 5.36
928 4220 2.321720 CCCCCAAGTAATCTGGGCT 58.678 57.895 2.11 0.00 41.43 5.19
940 4234 2.310779 TCTGGGCTCTCAAGTAGTGT 57.689 50.000 0.00 0.00 0.00 3.55
978 4272 1.151668 CGGCTCATATTAGCTGTGCC 58.848 55.000 9.24 0.68 45.41 5.01
1505 4829 0.033011 AGTACCAGATCACCTCGCCT 60.033 55.000 0.00 0.00 0.00 5.52
1638 4970 2.603473 GTTGGGGGAACTTGGGGC 60.603 66.667 0.00 0.00 0.00 5.80
1691 5023 2.171027 TCCGTTAACTGAAGGTGTTGGT 59.829 45.455 3.71 0.00 0.00 3.67
1692 5024 2.946990 CCGTTAACTGAAGGTGTTGGTT 59.053 45.455 3.71 0.00 0.00 3.67
1693 5025 3.002965 CCGTTAACTGAAGGTGTTGGTTC 59.997 47.826 3.71 0.00 0.00 3.62
1694 5026 3.875134 CGTTAACTGAAGGTGTTGGTTCT 59.125 43.478 3.71 0.00 0.00 3.01
1695 5027 4.334481 CGTTAACTGAAGGTGTTGGTTCTT 59.666 41.667 3.71 0.00 0.00 2.52
1696 5028 5.503520 CGTTAACTGAAGGTGTTGGTTCTTC 60.504 44.000 3.71 0.00 37.85 2.87
1697 5029 3.933861 ACTGAAGGTGTTGGTTCTTCT 57.066 42.857 0.00 0.00 38.10 2.85
1698 5030 3.809905 ACTGAAGGTGTTGGTTCTTCTC 58.190 45.455 0.00 0.00 38.10 2.87
1699 5031 3.142174 CTGAAGGTGTTGGTTCTTCTCC 58.858 50.000 0.00 0.00 38.10 3.71
1807 5142 1.599518 GTGTCACCACCGCCATTGA 60.600 57.895 0.00 0.00 35.44 2.57
2076 5411 7.033530 TGTCATCCGTTTCTAACATTGTTTT 57.966 32.000 7.45 0.00 0.00 2.43
2140 5475 5.654209 GGGAAGGATATATGGCCTGATTTTC 59.346 44.000 3.32 0.00 34.00 2.29
2178 5513 0.322546 GTTGGGTCCTGGGTCATGTC 60.323 60.000 0.00 0.00 0.00 3.06
2204 5539 1.314730 TTGCTTTTTGAGACCGTCCC 58.685 50.000 0.00 0.00 0.00 4.46
2220 5556 2.435938 CCGGGTCATGTTGGGTCG 60.436 66.667 0.00 0.00 0.00 4.79
2245 5581 2.285977 ACGTGGTTTGGTGTTCTTCTC 58.714 47.619 0.00 0.00 0.00 2.87
2248 5584 3.377172 CGTGGTTTGGTGTTCTTCTCTTT 59.623 43.478 0.00 0.00 0.00 2.52
2249 5585 4.142469 CGTGGTTTGGTGTTCTTCTCTTTT 60.142 41.667 0.00 0.00 0.00 2.27
2250 5586 5.621329 CGTGGTTTGGTGTTCTTCTCTTTTT 60.621 40.000 0.00 0.00 0.00 1.94
2294 5633 4.979943 GGTTACACCTGACTACTACCTC 57.020 50.000 0.00 0.00 34.73 3.85
2295 5634 3.698539 GGTTACACCTGACTACTACCTCC 59.301 52.174 0.00 0.00 34.73 4.30
2296 5635 2.125773 ACACCTGACTACTACCTCCG 57.874 55.000 0.00 0.00 0.00 4.63
2297 5636 1.353694 ACACCTGACTACTACCTCCGT 59.646 52.381 0.00 0.00 0.00 4.69
2298 5637 2.015587 CACCTGACTACTACCTCCGTC 58.984 57.143 0.00 0.00 0.00 4.79
2299 5638 1.632409 ACCTGACTACTACCTCCGTCA 59.368 52.381 0.00 0.00 35.35 4.35
2300 5639 2.241685 ACCTGACTACTACCTCCGTCAT 59.758 50.000 0.00 0.00 36.01 3.06
2301 5640 2.619177 CCTGACTACTACCTCCGTCATG 59.381 54.545 0.00 0.00 36.01 3.07
2302 5641 2.619177 CTGACTACTACCTCCGTCATGG 59.381 54.545 0.00 0.00 36.01 3.66
2303 5642 2.025605 TGACTACTACCTCCGTCATGGT 60.026 50.000 0.00 0.00 39.52 3.55
2304 5643 3.022406 GACTACTACCTCCGTCATGGTT 58.978 50.000 0.00 0.00 39.52 3.67
2305 5644 3.438183 ACTACTACCTCCGTCATGGTTT 58.562 45.455 0.00 0.00 39.52 3.27
2306 5645 4.603131 ACTACTACCTCCGTCATGGTTTA 58.397 43.478 0.00 0.00 39.52 2.01
2307 5646 5.206587 ACTACTACCTCCGTCATGGTTTAT 58.793 41.667 0.00 0.00 39.52 1.40
2308 5647 5.659971 ACTACTACCTCCGTCATGGTTTATT 59.340 40.000 0.00 0.00 39.52 1.40
2309 5648 4.766375 ACTACCTCCGTCATGGTTTATTG 58.234 43.478 0.00 0.00 39.52 1.90
2310 5649 2.999331 ACCTCCGTCATGGTTTATTGG 58.001 47.619 0.00 0.00 39.52 3.16
2311 5650 2.307686 ACCTCCGTCATGGTTTATTGGT 59.692 45.455 0.00 0.00 39.52 3.67
2312 5651 2.943033 CCTCCGTCATGGTTTATTGGTC 59.057 50.000 0.00 0.00 39.52 4.02
2313 5652 3.370527 CCTCCGTCATGGTTTATTGGTCT 60.371 47.826 0.00 0.00 39.52 3.85
2314 5653 4.141801 CCTCCGTCATGGTTTATTGGTCTA 60.142 45.833 0.00 0.00 39.52 2.59
2315 5654 4.761975 TCCGTCATGGTTTATTGGTCTAC 58.238 43.478 0.00 0.00 39.52 2.59
2316 5655 4.223255 TCCGTCATGGTTTATTGGTCTACA 59.777 41.667 0.00 0.00 39.52 2.74
2317 5656 5.104693 TCCGTCATGGTTTATTGGTCTACAT 60.105 40.000 0.00 0.00 39.52 2.29
2318 5657 5.588648 CCGTCATGGTTTATTGGTCTACATT 59.411 40.000 0.00 0.00 0.00 2.71
2319 5658 6.764085 CCGTCATGGTTTATTGGTCTACATTA 59.236 38.462 0.00 0.00 0.00 1.90
2320 5659 7.444183 CCGTCATGGTTTATTGGTCTACATTAT 59.556 37.037 0.00 0.00 0.00 1.28
2321 5660 8.282592 CGTCATGGTTTATTGGTCTACATTATG 58.717 37.037 0.00 0.00 0.00 1.90
2322 5661 9.120538 GTCATGGTTTATTGGTCTACATTATGT 57.879 33.333 2.58 2.58 0.00 2.29
2332 5671 9.679661 ATTGGTCTACATTATGTATTGTGTCAA 57.320 29.630 5.46 6.03 31.66 3.18
2333 5672 9.508642 TTGGTCTACATTATGTATTGTGTCAAA 57.491 29.630 5.46 0.00 31.66 2.69
2334 5673 9.679661 TGGTCTACATTATGTATTGTGTCAAAT 57.320 29.630 5.46 0.00 31.66 2.32
2406 5745 8.221801 TGAAAATTTCAAATACGAATCCAACG 57.778 30.769 5.87 0.00 36.59 4.10
2407 5746 8.076781 TGAAAATTTCAAATACGAATCCAACGA 58.923 29.630 5.87 0.00 36.59 3.85
2408 5747 8.980143 AAAATTTCAAATACGAATCCAACGAT 57.020 26.923 0.00 0.00 34.70 3.73
2409 5748 7.969387 AATTTCAAATACGAATCCAACGATG 57.031 32.000 0.00 0.00 34.70 3.84
2410 5749 6.489127 TTTCAAATACGAATCCAACGATGT 57.511 33.333 0.00 0.00 34.70 3.06
2411 5750 7.598189 TTTCAAATACGAATCCAACGATGTA 57.402 32.000 0.00 0.00 34.70 2.29
2412 5751 7.598189 TTCAAATACGAATCCAACGATGTAA 57.402 32.000 0.00 0.00 34.70 2.41
2413 5752 7.780008 TCAAATACGAATCCAACGATGTAAT 57.220 32.000 0.00 0.00 34.70 1.89
2414 5753 8.203937 TCAAATACGAATCCAACGATGTAATT 57.796 30.769 0.00 0.00 34.70 1.40
2415 5754 8.119845 TCAAATACGAATCCAACGATGTAATTG 58.880 33.333 0.00 0.00 28.35 2.32
2416 5755 7.780008 AATACGAATCCAACGATGTAATTGA 57.220 32.000 0.00 0.00 34.70 2.57
2417 5756 7.962964 ATACGAATCCAACGATGTAATTGAT 57.037 32.000 0.00 0.00 34.70 2.57
2418 5757 6.677781 ACGAATCCAACGATGTAATTGATT 57.322 33.333 0.00 0.00 34.70 2.57
2419 5758 7.083875 ACGAATCCAACGATGTAATTGATTT 57.916 32.000 0.00 0.00 34.70 2.17
2420 5759 7.186804 ACGAATCCAACGATGTAATTGATTTC 58.813 34.615 0.00 0.00 34.70 2.17
2421 5760 7.065803 ACGAATCCAACGATGTAATTGATTTCT 59.934 33.333 0.00 0.00 34.70 2.52
2422 5761 7.374228 CGAATCCAACGATGTAATTGATTTCTG 59.626 37.037 0.00 0.00 0.00 3.02
2423 5762 7.630242 ATCCAACGATGTAATTGATTTCTGT 57.370 32.000 0.00 0.00 0.00 3.41
2424 5763 7.447374 TCCAACGATGTAATTGATTTCTGTT 57.553 32.000 0.00 0.00 0.00 3.16
2425 5764 7.304735 TCCAACGATGTAATTGATTTCTGTTG 58.695 34.615 0.00 0.00 34.37 3.33
2426 5765 7.174080 TCCAACGATGTAATTGATTTCTGTTGA 59.826 33.333 0.00 0.00 36.09 3.18
2427 5766 7.271223 CCAACGATGTAATTGATTTCTGTTGAC 59.729 37.037 0.00 0.00 36.09 3.18
2428 5767 7.433708 ACGATGTAATTGATTTCTGTTGACA 57.566 32.000 0.00 0.00 0.00 3.58
2429 5768 8.044060 ACGATGTAATTGATTTCTGTTGACAT 57.956 30.769 0.00 0.00 0.00 3.06
2433 5772 8.164058 TGTAATTGATTTCTGTTGACATGTGA 57.836 30.769 1.15 0.00 0.00 3.58
2464 5804 6.022163 TCGTGTTTTGACCCTTTTTGTAAA 57.978 33.333 0.00 0.00 0.00 2.01
2995 6338 9.495572 TTCTAGTTCATTTGGTTGTTTGTTTTT 57.504 25.926 0.00 0.00 0.00 1.94
3051 6397 7.920160 TCTACAAATATGACAGCAATCACAA 57.080 32.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.535963 TCCATAGATGCATCGTTCATATCT 57.464 37.500 20.67 3.48 33.15 1.98
60 61 3.206964 TCTACAACACGCAACATTTCCA 58.793 40.909 0.00 0.00 0.00 3.53
72 73 9.979270 CAATCTTCATACAGAAATCTACAACAC 57.021 33.333 0.00 0.00 35.40 3.32
191 192 3.051479 CGCTGCCATGTGAGCACA 61.051 61.111 5.70 5.70 46.44 4.57
396 498 2.350804 CGACGCTTGCAGTCTACTAGTA 59.649 50.000 1.89 1.89 36.53 1.82
397 499 1.130749 CGACGCTTGCAGTCTACTAGT 59.869 52.381 0.00 0.00 36.53 2.57
398 500 1.816370 CGACGCTTGCAGTCTACTAG 58.184 55.000 12.69 0.00 36.53 2.57
399 501 0.179171 GCGACGCTTGCAGTCTACTA 60.179 55.000 13.73 0.00 36.53 1.82
400 502 1.444553 GCGACGCTTGCAGTCTACT 60.445 57.895 13.73 0.00 36.53 2.57
401 503 1.444553 AGCGACGCTTGCAGTCTAC 60.445 57.895 18.46 7.29 33.89 2.59
402 504 1.444383 CAGCGACGCTTGCAGTCTA 60.444 57.895 21.97 0.00 36.40 2.59
403 505 2.498291 ATCAGCGACGCTTGCAGTCT 62.498 55.000 21.97 0.00 36.40 3.24
404 506 2.018582 GATCAGCGACGCTTGCAGTC 62.019 60.000 21.97 9.97 36.40 3.51
462 564 6.039616 CAGAGTTGAAAATTTTGTTCGGGAA 58.960 36.000 8.47 0.00 0.00 3.97
466 568 5.947503 TGCAGAGTTGAAAATTTTGTTCG 57.052 34.783 8.47 0.00 0.00 3.95
517 619 1.201414 GCCGTTTACCATGTTGAAGGG 59.799 52.381 2.62 2.62 0.00 3.95
526 628 1.303091 GCTTCGTGGCCGTTTACCAT 61.303 55.000 0.00 0.00 39.95 3.55
551 653 8.079211 ACCACTCTTGACTAATTTATGCTCTA 57.921 34.615 0.00 0.00 0.00 2.43
552 654 6.951971 ACCACTCTTGACTAATTTATGCTCT 58.048 36.000 0.00 0.00 0.00 4.09
553 655 8.894768 ATACCACTCTTGACTAATTTATGCTC 57.105 34.615 0.00 0.00 0.00 4.26
554 656 7.934120 GGATACCACTCTTGACTAATTTATGCT 59.066 37.037 0.00 0.00 0.00 3.79
555 657 7.934120 AGGATACCACTCTTGACTAATTTATGC 59.066 37.037 0.00 0.00 37.17 3.14
556 658 9.265901 CAGGATACCACTCTTGACTAATTTATG 57.734 37.037 0.00 0.00 37.17 1.90
557 659 9.213777 TCAGGATACCACTCTTGACTAATTTAT 57.786 33.333 0.00 0.00 37.17 1.40
558 660 8.603898 TCAGGATACCACTCTTGACTAATTTA 57.396 34.615 0.00 0.00 37.17 1.40
559 661 7.496346 TCAGGATACCACTCTTGACTAATTT 57.504 36.000 0.00 0.00 37.17 1.82
560 662 7.566879 AGATCAGGATACCACTCTTGACTAATT 59.433 37.037 0.00 0.00 34.53 1.40
561 663 7.015098 CAGATCAGGATACCACTCTTGACTAAT 59.985 40.741 0.00 0.00 34.53 1.73
562 664 6.322456 CAGATCAGGATACCACTCTTGACTAA 59.678 42.308 0.00 0.00 34.53 2.24
563 665 5.830457 CAGATCAGGATACCACTCTTGACTA 59.170 44.000 0.00 0.00 34.53 2.59
564 666 4.648762 CAGATCAGGATACCACTCTTGACT 59.351 45.833 0.00 0.00 34.53 3.41
565 667 4.739137 GCAGATCAGGATACCACTCTTGAC 60.739 50.000 0.00 0.00 34.53 3.18
566 668 3.386078 GCAGATCAGGATACCACTCTTGA 59.614 47.826 0.00 0.00 35.94 3.02
567 669 3.133542 TGCAGATCAGGATACCACTCTTG 59.866 47.826 0.00 0.00 37.17 3.02
568 670 3.378512 TGCAGATCAGGATACCACTCTT 58.621 45.455 0.00 0.00 37.17 2.85
569 671 2.964464 CTGCAGATCAGGATACCACTCT 59.036 50.000 8.42 0.00 39.15 3.24
570 672 3.383620 CTGCAGATCAGGATACCACTC 57.616 52.381 8.42 0.00 39.15 3.51
581 683 2.265739 GCCCGTGACTGCAGATCA 59.734 61.111 23.35 17.05 0.00 2.92
582 684 2.265739 TGCCCGTGACTGCAGATC 59.734 61.111 23.35 14.55 32.77 2.75
586 688 4.994471 CTGCTGCCCGTGACTGCA 62.994 66.667 0.00 0.00 39.31 4.41
634 736 2.807895 TACTTGCCGTTCTCGCGC 60.808 61.111 0.00 0.00 35.54 6.86
635 737 2.774951 CGTACTTGCCGTTCTCGCG 61.775 63.158 0.00 0.00 35.54 5.87
636 738 3.067846 GCGTACTTGCCGTTCTCGC 62.068 63.158 0.00 0.00 34.22 5.03
637 739 2.442188 GGCGTACTTGCCGTTCTCG 61.442 63.158 0.00 0.00 46.75 4.04
638 740 3.471399 GGCGTACTTGCCGTTCTC 58.529 61.111 0.00 0.00 46.75 2.87
687 789 2.266055 GAGGGGACACAGGCGAAG 59.734 66.667 0.00 0.00 0.00 3.79
688 790 3.319198 GGAGGGGACACAGGCGAA 61.319 66.667 0.00 0.00 0.00 4.70
741 843 3.668980 TAACCCTAACCGCGCCAGC 62.669 63.158 0.00 0.00 40.74 4.85
742 844 1.520787 CTAACCCTAACCGCGCCAG 60.521 63.158 0.00 0.00 0.00 4.85
743 845 2.580276 CTAACCCTAACCGCGCCA 59.420 61.111 0.00 0.00 0.00 5.69
744 846 2.202974 CCTAACCCTAACCGCGCC 60.203 66.667 0.00 0.00 0.00 6.53
745 847 2.202974 CCCTAACCCTAACCGCGC 60.203 66.667 0.00 0.00 0.00 6.86
746 848 2.502577 CCCCTAACCCTAACCGCG 59.497 66.667 0.00 0.00 0.00 6.46
747 849 2.191375 GCCCCTAACCCTAACCGC 59.809 66.667 0.00 0.00 0.00 5.68
748 850 2.502577 CGCCCCTAACCCTAACCG 59.497 66.667 0.00 0.00 0.00 4.44
749 851 2.749584 CCCGCCCCTAACCCTAACC 61.750 68.421 0.00 0.00 0.00 2.85
750 852 2.749584 CCCCGCCCCTAACCCTAAC 61.750 68.421 0.00 0.00 0.00 2.34
751 853 2.367242 CCCCGCCCCTAACCCTAA 60.367 66.667 0.00 0.00 0.00 2.69
752 854 3.366729 TCCCCGCCCCTAACCCTA 61.367 66.667 0.00 0.00 0.00 3.53
753 855 4.817909 CTCCCCGCCCCTAACCCT 62.818 72.222 0.00 0.00 0.00 4.34
765 867 4.416738 GTGACTGCAGCCCTCCCC 62.417 72.222 15.27 0.00 0.00 4.81
766 868 4.416738 GGTGACTGCAGCCCTCCC 62.417 72.222 15.27 3.06 36.54 4.30
767 869 1.990060 TAGGTGACTGCAGCCCTCC 60.990 63.158 20.04 17.83 43.41 4.30
768 870 1.219393 GTAGGTGACTGCAGCCCTC 59.781 63.158 20.04 9.31 43.36 4.30
769 871 3.393360 GTAGGTGACTGCAGCCCT 58.607 61.111 15.27 18.40 43.36 5.19
775 877 6.696441 ATAGTAAGTACTGTAGGTGACTGC 57.304 41.667 0.00 0.00 44.26 4.40
776 878 9.263538 CTCTATAGTAAGTACTGTAGGTGACTG 57.736 40.741 17.30 0.00 43.78 3.51
777 879 7.933033 GCTCTATAGTAAGTACTGTAGGTGACT 59.067 40.741 17.30 0.00 43.78 3.41
778 880 7.714377 TGCTCTATAGTAAGTACTGTAGGTGAC 59.286 40.741 17.30 8.78 43.78 3.67
779 881 7.799081 TGCTCTATAGTAAGTACTGTAGGTGA 58.201 38.462 17.30 3.71 43.78 4.02
780 882 8.624367 ATGCTCTATAGTAAGTACTGTAGGTG 57.376 38.462 17.30 13.04 43.78 4.00
802 904 7.934120 AGGATACCACTCTTGACTAATTTATGC 59.066 37.037 0.00 0.00 37.17 3.14
816 918 9.653516 CCTATATATCAATCAGGATACCACTCT 57.346 37.037 0.00 0.00 32.88 3.24
817 919 8.865090 CCCTATATATCAATCAGGATACCACTC 58.135 40.741 0.69 0.00 32.88 3.51
818 920 8.578376 TCCCTATATATCAATCAGGATACCACT 58.422 37.037 0.69 0.00 32.88 4.00
819 921 8.783660 TCCCTATATATCAATCAGGATACCAC 57.216 38.462 0.69 0.00 32.88 4.16
820 922 9.797732 TTTCCCTATATATCAATCAGGATACCA 57.202 33.333 0.69 0.00 32.88 3.25
842 1206 4.021016 TCAGGCTAGTCTGACTTCTTTTCC 60.021 45.833 23.07 8.26 38.70 3.13
860 4122 0.729690 GCGATTCCAACTCTTCAGGC 59.270 55.000 0.00 0.00 0.00 4.85
877 4139 2.315011 TCGTTTAAGCTTTGCAATGCG 58.685 42.857 26.01 14.19 34.59 4.73
882 4144 1.070175 GTCGCTCGTTTAAGCTTTGCA 60.070 47.619 3.20 0.00 40.23 4.08
895 4157 2.815647 GGGGCAAGAAGTCGCTCG 60.816 66.667 0.00 0.00 0.00 5.03
911 4203 1.141858 GAGAGCCCAGATTACTTGGGG 59.858 57.143 11.97 0.23 42.95 4.96
927 4219 3.425094 CCGACTCGAACACTACTTGAGAG 60.425 52.174 0.00 0.00 33.83 3.20
928 4220 2.483106 CCGACTCGAACACTACTTGAGA 59.517 50.000 0.00 0.00 0.00 3.27
940 4234 0.316772 GATCGAATCGCCGACTCGAA 60.317 55.000 24.45 8.53 44.06 3.71
978 4272 0.038343 CGGTGTGATTTGGCAAAGGG 60.038 55.000 18.61 0.00 0.00 3.95
1019 4313 0.775861 GCAAACGCAAACGAATGGTC 59.224 50.000 0.00 0.00 43.93 4.02
1345 4645 1.607178 CCATTCTGCCCTTGCCACA 60.607 57.895 0.00 0.00 36.33 4.17
1454 4778 2.359975 CCGCTGGGGTCCTTGTTC 60.360 66.667 1.98 0.00 0.00 3.18
1455 4779 4.660938 GCCGCTGGGGTCCTTGTT 62.661 66.667 12.70 0.00 38.44 2.83
1554 4878 3.077556 TCGCTTCCTCTGCTCCCC 61.078 66.667 0.00 0.00 0.00 4.81
1585 4909 0.395311 TCGATCCTTACGCACCTCCT 60.395 55.000 0.00 0.00 0.00 3.69
1638 4970 3.555956 CACTAAATCAGGGACGAATTCGG 59.444 47.826 29.79 13.08 44.95 4.30
1691 5023 5.841237 TGGAGAAGAAGAAGAAGGAGAAGAA 59.159 40.000 0.00 0.00 0.00 2.52
1692 5024 5.398236 TGGAGAAGAAGAAGAAGGAGAAGA 58.602 41.667 0.00 0.00 0.00 2.87
1693 5025 5.337491 CCTGGAGAAGAAGAAGAAGGAGAAG 60.337 48.000 0.00 0.00 0.00 2.85
1694 5026 4.530161 CCTGGAGAAGAAGAAGAAGGAGAA 59.470 45.833 0.00 0.00 0.00 2.87
1695 5027 4.093011 CCTGGAGAAGAAGAAGAAGGAGA 58.907 47.826 0.00 0.00 0.00 3.71
1696 5028 3.369366 GCCTGGAGAAGAAGAAGAAGGAG 60.369 52.174 0.00 0.00 0.00 3.69
1697 5029 2.569404 GCCTGGAGAAGAAGAAGAAGGA 59.431 50.000 0.00 0.00 0.00 3.36
1698 5030 2.676463 CGCCTGGAGAAGAAGAAGAAGG 60.676 54.545 0.00 0.00 0.00 3.46
1699 5031 2.028567 ACGCCTGGAGAAGAAGAAGAAG 60.029 50.000 3.87 0.00 0.00 2.85
1791 5126 0.889186 ACTTCAATGGCGGTGGTGAC 60.889 55.000 0.00 0.00 0.00 3.67
1830 5165 1.103803 GGTAGAGAGCACCATCGTCA 58.896 55.000 0.00 0.00 36.01 4.35
1877 5212 1.229082 TAGTGCCCACCGTTCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
2015 5350 2.437716 CAAATGTACGGGCGGGCT 60.438 61.111 0.26 0.00 0.00 5.19
2076 5411 3.117701 TGTCAAGAACCAAGGATCCACAA 60.118 43.478 15.82 0.00 0.00 3.33
2178 5513 3.728864 CGGTCTCAAAAAGCAATCCATCG 60.729 47.826 0.00 0.00 0.00 3.84
2204 5539 2.032634 CACGACCCAACATGACCCG 61.033 63.158 0.00 0.00 0.00 5.28
2220 5556 1.033202 AACACCAAACCACGTCCCAC 61.033 55.000 0.00 0.00 0.00 4.61
2249 5585 9.875708 ACCTAATGTGCTATTAATAATCCCAAA 57.124 29.630 0.00 0.00 0.00 3.28
2250 5586 9.875708 AACCTAATGTGCTATTAATAATCCCAA 57.124 29.630 0.00 0.00 0.00 4.12
2285 5624 5.786264 ATAAACCATGACGGAGGTAGTAG 57.214 43.478 0.00 0.00 37.07 2.57
2286 5625 5.163385 CCAATAAACCATGACGGAGGTAGTA 60.163 44.000 0.00 0.00 37.07 1.82
2287 5626 4.383770 CCAATAAACCATGACGGAGGTAGT 60.384 45.833 0.00 0.00 37.07 2.73
2288 5627 4.127171 CCAATAAACCATGACGGAGGTAG 58.873 47.826 0.00 0.00 37.07 3.18
2289 5628 3.520317 ACCAATAAACCATGACGGAGGTA 59.480 43.478 0.00 0.00 37.07 3.08
2290 5629 2.307686 ACCAATAAACCATGACGGAGGT 59.692 45.455 0.00 0.00 40.61 3.85
2291 5630 2.943033 GACCAATAAACCATGACGGAGG 59.057 50.000 0.00 0.00 38.63 4.30
2292 5631 3.873910 AGACCAATAAACCATGACGGAG 58.126 45.455 0.00 0.00 38.63 4.63
2293 5632 3.992943 AGACCAATAAACCATGACGGA 57.007 42.857 0.00 0.00 38.63 4.69
2294 5633 4.509616 TGTAGACCAATAAACCATGACGG 58.490 43.478 0.00 0.00 42.50 4.79
2295 5634 6.677781 AATGTAGACCAATAAACCATGACG 57.322 37.500 0.00 0.00 0.00 4.35
2296 5635 9.120538 ACATAATGTAGACCAATAAACCATGAC 57.879 33.333 0.00 0.00 0.00 3.06
2306 5645 9.679661 TTGACACAATACATAATGTAGACCAAT 57.320 29.630 0.00 0.00 36.14 3.16
2307 5646 9.508642 TTTGACACAATACATAATGTAGACCAA 57.491 29.630 0.00 0.00 36.14 3.67
2308 5647 9.679661 ATTTGACACAATACATAATGTAGACCA 57.320 29.630 0.00 0.00 36.14 4.02
2381 5720 8.076781 TCGTTGGATTCGTATTTGAAATTTTCA 58.923 29.630 7.74 7.74 38.04 2.69
2382 5721 8.442605 TCGTTGGATTCGTATTTGAAATTTTC 57.557 30.769 0.00 2.05 0.00 2.29
2383 5722 8.859156 CATCGTTGGATTCGTATTTGAAATTTT 58.141 29.630 0.00 0.00 0.00 1.82
2384 5723 8.026607 ACATCGTTGGATTCGTATTTGAAATTT 58.973 29.630 0.00 0.00 0.00 1.82
2385 5724 7.535139 ACATCGTTGGATTCGTATTTGAAATT 58.465 30.769 0.00 0.00 0.00 1.82
2386 5725 7.083875 ACATCGTTGGATTCGTATTTGAAAT 57.916 32.000 0.00 0.00 0.00 2.17
2387 5726 6.489127 ACATCGTTGGATTCGTATTTGAAA 57.511 33.333 0.00 0.00 0.00 2.69
2388 5727 7.598189 TTACATCGTTGGATTCGTATTTGAA 57.402 32.000 0.00 0.00 0.00 2.69
2389 5728 7.780008 ATTACATCGTTGGATTCGTATTTGA 57.220 32.000 0.00 0.00 0.00 2.69
2390 5729 8.119845 TCAATTACATCGTTGGATTCGTATTTG 58.880 33.333 0.00 0.00 31.67 2.32
2391 5730 8.203937 TCAATTACATCGTTGGATTCGTATTT 57.796 30.769 0.00 0.00 0.00 1.40
2392 5731 7.780008 TCAATTACATCGTTGGATTCGTATT 57.220 32.000 0.00 0.00 0.00 1.89
2393 5732 7.962964 ATCAATTACATCGTTGGATTCGTAT 57.037 32.000 0.00 0.00 0.00 3.06
2394 5733 7.780008 AATCAATTACATCGTTGGATTCGTA 57.220 32.000 0.00 0.00 0.00 3.43
2395 5734 6.677781 AATCAATTACATCGTTGGATTCGT 57.322 33.333 0.00 0.00 0.00 3.85
2396 5735 7.374228 CAGAAATCAATTACATCGTTGGATTCG 59.626 37.037 0.00 0.00 31.61 3.34
2397 5736 8.184192 ACAGAAATCAATTACATCGTTGGATTC 58.816 33.333 0.00 0.00 0.00 2.52
2398 5737 8.055279 ACAGAAATCAATTACATCGTTGGATT 57.945 30.769 0.00 0.00 0.00 3.01
2399 5738 7.630242 ACAGAAATCAATTACATCGTTGGAT 57.370 32.000 0.00 0.00 0.00 3.41
2400 5739 7.174080 TCAACAGAAATCAATTACATCGTTGGA 59.826 33.333 0.00 0.00 32.83 3.53
2401 5740 7.271223 GTCAACAGAAATCAATTACATCGTTGG 59.729 37.037 0.00 0.00 32.83 3.77
2402 5741 7.802720 TGTCAACAGAAATCAATTACATCGTTG 59.197 33.333 0.00 0.00 33.16 4.10
2403 5742 7.870826 TGTCAACAGAAATCAATTACATCGTT 58.129 30.769 0.00 0.00 0.00 3.85
2404 5743 7.433708 TGTCAACAGAAATCAATTACATCGT 57.566 32.000 0.00 0.00 0.00 3.73
2405 5744 7.964559 ACATGTCAACAGAAATCAATTACATCG 59.035 33.333 0.00 0.00 0.00 3.84
2406 5745 9.069078 CACATGTCAACAGAAATCAATTACATC 57.931 33.333 0.00 0.00 0.00 3.06
2407 5746 8.795513 TCACATGTCAACAGAAATCAATTACAT 58.204 29.630 0.00 0.00 0.00 2.29
2408 5747 8.075574 GTCACATGTCAACAGAAATCAATTACA 58.924 33.333 0.00 0.00 0.00 2.41
2409 5748 7.538678 GGTCACATGTCAACAGAAATCAATTAC 59.461 37.037 0.00 0.00 0.00 1.89
2410 5749 7.572910 CGGTCACATGTCAACAGAAATCAATTA 60.573 37.037 0.00 0.00 0.00 1.40
2411 5750 6.449698 GGTCACATGTCAACAGAAATCAATT 58.550 36.000 0.00 0.00 0.00 2.32
2412 5751 5.335113 CGGTCACATGTCAACAGAAATCAAT 60.335 40.000 0.00 0.00 0.00 2.57
2413 5752 4.024133 CGGTCACATGTCAACAGAAATCAA 60.024 41.667 0.00 0.00 0.00 2.57
2414 5753 3.498018 CGGTCACATGTCAACAGAAATCA 59.502 43.478 0.00 0.00 0.00 2.57
2415 5754 3.745975 TCGGTCACATGTCAACAGAAATC 59.254 43.478 0.00 0.00 0.00 2.17
2416 5755 3.738982 TCGGTCACATGTCAACAGAAAT 58.261 40.909 0.00 0.00 0.00 2.17
2417 5756 3.186702 TCGGTCACATGTCAACAGAAA 57.813 42.857 0.00 0.00 0.00 2.52
2418 5757 2.900716 TCGGTCACATGTCAACAGAA 57.099 45.000 0.00 0.00 0.00 3.02
2419 5758 2.900716 TTCGGTCACATGTCAACAGA 57.099 45.000 0.00 0.75 0.00 3.41
2420 5759 4.466828 GAAATTCGGTCACATGTCAACAG 58.533 43.478 0.00 0.00 0.00 3.16
2421 5760 3.059257 CGAAATTCGGTCACATGTCAACA 60.059 43.478 7.61 0.00 36.00 3.33
2422 5761 3.059188 ACGAAATTCGGTCACATGTCAAC 60.059 43.478 19.95 0.00 45.59 3.18
2423 5762 3.059257 CACGAAATTCGGTCACATGTCAA 60.059 43.478 19.95 0.00 45.59 3.18
2424 5763 2.478514 CACGAAATTCGGTCACATGTCA 59.521 45.455 19.95 0.00 45.59 3.58
2425 5764 2.478894 ACACGAAATTCGGTCACATGTC 59.521 45.455 19.95 0.00 45.59 3.06
2426 5765 2.489971 ACACGAAATTCGGTCACATGT 58.510 42.857 19.95 10.42 45.59 3.21
2427 5766 3.536158 AACACGAAATTCGGTCACATG 57.464 42.857 19.95 9.78 45.59 3.21
2428 5767 4.035792 TCAAAACACGAAATTCGGTCACAT 59.964 37.500 19.95 0.00 45.59 3.21
2429 5768 3.374367 TCAAAACACGAAATTCGGTCACA 59.626 39.130 19.95 0.00 45.59 3.58
2433 5772 2.033675 GGGTCAAAACACGAAATTCGGT 59.966 45.455 19.95 11.44 45.59 4.69
2464 5804 4.911390 ACCGAGGTCAGATCTTGAATTTT 58.089 39.130 0.00 0.00 37.61 1.82
2500 5840 3.431415 GGTAGCAAAAGGGTCAAATCCT 58.569 45.455 0.00 0.00 35.88 3.24
2995 6338 8.393671 TGTATATTGCTGTCATATTGCATTCA 57.606 30.769 0.00 0.00 36.55 2.57
3121 6467 2.557317 GTGGAACTCCGTTGAAGTTCA 58.443 47.619 15.55 0.08 42.46 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.