Multiple sequence alignment - TraesCS5B01G103300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G103300 chr5B 100.000 5770 0 0 2570 8339 137670556 137664787 0.000000e+00 10656.0
1 TraesCS5B01G103300 chr5B 100.000 1951 0 0 315 2265 137672811 137670861 0.000000e+00 3603.0
2 TraesCS5B01G103300 chr5B 93.678 174 9 2 3991 4163 556958798 556958970 8.300000e-65 259.0
3 TraesCS5B01G103300 chr5B 100.000 51 0 0 1 51 137673125 137673075 2.480000e-15 95.3
4 TraesCS5B01G103300 chr5B 87.097 62 4 4 5803 5862 393567607 393567666 5.400000e-07 67.6
5 TraesCS5B01G103300 chr5D 91.262 1934 112 29 4157 6069 124855207 124853310 0.000000e+00 2582.0
6 TraesCS5B01G103300 chr5D 93.673 1533 41 15 373 1866 124858604 124857089 0.000000e+00 2242.0
7 TraesCS5B01G103300 chr5D 90.636 1666 98 29 6263 7917 124848420 124846802 0.000000e+00 2159.0
8 TraesCS5B01G103300 chr5D 90.947 972 46 19 2663 3613 124856697 124855747 0.000000e+00 1269.0
9 TraesCS5B01G103300 chr5D 91.589 428 36 0 7912 8339 124845197 124844770 7.210000e-165 592.0
10 TraesCS5B01G103300 chr5D 92.453 371 10 5 3634 3993 124855562 124855199 1.610000e-141 514.0
11 TraesCS5B01G103300 chr5D 88.235 204 22 2 2044 2246 124857097 124856895 8.360000e-60 243.0
12 TraesCS5B01G103300 chr5D 94.194 155 7 2 6060 6214 124853277 124853125 1.400000e-57 235.0
13 TraesCS5B01G103300 chr5D 78.167 371 75 5 7739 8105 2134814 2134446 1.810000e-56 231.0
14 TraesCS5B01G103300 chr5D 81.726 197 28 8 1857 2048 385904509 385904316 3.120000e-34 158.0
15 TraesCS5B01G103300 chr5D 98.438 64 1 0 6212 6275 124852286 124852223 6.840000e-21 113.0
16 TraesCS5B01G103300 chr5A 92.367 1415 51 19 6060 7467 139079883 139078519 0.000000e+00 1962.0
17 TraesCS5B01G103300 chr5A 93.998 1283 31 20 600 1867 139084230 139082979 0.000000e+00 1901.0
18 TraesCS5B01G103300 chr5A 94.807 674 23 5 4157 4820 139081112 139080441 0.000000e+00 1040.0
19 TraesCS5B01G103300 chr5A 86.154 975 45 39 2678 3613 139082656 139081733 0.000000e+00 970.0
20 TraesCS5B01G103300 chr5A 89.836 610 62 0 7730 8339 139074985 139074376 0.000000e+00 784.0
21 TraesCS5B01G103300 chr5A 92.063 378 10 3 3634 3999 139081477 139081108 1.610000e-141 514.0
22 TraesCS5B01G103300 chr5A 84.725 491 51 17 5587 6069 139080389 139079915 3.520000e-128 470.0
23 TraesCS5B01G103300 chr5A 93.227 251 8 3 7485 7730 139078534 139078288 2.210000e-95 361.0
24 TraesCS5B01G103300 chr5A 95.152 165 8 0 3996 4160 44602573 44602737 2.310000e-65 261.0
25 TraesCS5B01G103300 chr5A 85.547 256 19 9 317 569 139084615 139084375 1.390000e-62 252.0
26 TraesCS5B01G103300 chr5A 84.375 256 22 9 317 569 139204024 139203784 1.400000e-57 235.0
27 TraesCS5B01G103300 chr5A 93.525 139 7 2 600 737 139203630 139203493 1.100000e-48 206.0
28 TraesCS5B01G103300 chr5A 86.364 132 15 3 4859 4987 419214402 419214271 3.140000e-29 141.0
29 TraesCS5B01G103300 chr5A 76.437 174 31 8 6550 6721 387387059 387386894 1.490000e-12 86.1
30 TraesCS5B01G103300 chr3B 96.894 161 5 0 3999 4159 229460613 229460453 3.840000e-68 270.0
31 TraesCS5B01G103300 chr3B 95.732 164 7 0 3996 4159 52744106 52743943 1.780000e-66 265.0
32 TraesCS5B01G103300 chr3B 75.399 313 75 2 7831 8142 214443154 214442843 5.210000e-32 150.0
33 TraesCS5B01G103300 chr7B 92.432 185 13 1 3979 4163 588875762 588875579 6.420000e-66 263.0
34 TraesCS5B01G103300 chr7B 94.083 169 8 2 3996 4164 643503599 643503433 1.070000e-63 255.0
35 TraesCS5B01G103300 chr7B 73.019 467 105 14 7740 8195 714821931 714821475 2.430000e-30 145.0
36 TraesCS5B01G103300 chr7B 84.746 118 15 2 1340 1454 578438875 578438992 1.900000e-21 115.0
37 TraesCS5B01G103300 chr7B 72.393 326 78 9 7825 8146 714940252 714939935 8.910000e-15 93.5
38 TraesCS5B01G103300 chr7B 100.000 32 0 0 7784 7815 687300414 687300383 9.040000e-05 60.2
39 TraesCS5B01G103300 chr2B 95.122 164 8 0 3996 4159 643206380 643206543 8.300000e-65 259.0
40 TraesCS5B01G103300 chr2B 89.062 192 19 2 3996 4187 765211926 765212115 3.890000e-58 237.0
41 TraesCS5B01G103300 chr2B 90.449 178 14 3 3996 4172 610922709 610922884 1.810000e-56 231.0
42 TraesCS5B01G103300 chr2B 76.630 184 33 9 7741 7916 175422172 175422353 8.910000e-15 93.5
43 TraesCS5B01G103300 chr2B 95.455 44 2 0 1185 1228 147830245 147830288 4.180000e-08 71.3
44 TraesCS5B01G103300 chr2B 95.455 44 2 0 1185 1228 147869998 147870041 4.180000e-08 71.3
45 TraesCS5B01G103300 chr2B 95.455 44 2 0 1185 1228 148036907 148036950 4.180000e-08 71.3
46 TraesCS5B01G103300 chr7A 93.143 175 11 1 3996 4169 13105266 13105440 1.070000e-63 255.0
47 TraesCS5B01G103300 chr7A 74.187 461 110 9 7739 8191 516140047 516140506 5.140000e-42 183.0
48 TraesCS5B01G103300 chr7A 83.465 127 18 2 1340 1463 617385923 617385797 1.900000e-21 115.0
49 TraesCS5B01G103300 chr7A 78.235 170 35 2 1292 1460 646585130 646584962 3.180000e-19 108.0
50 TraesCS5B01G103300 chr4A 90.909 187 14 3 3989 4173 101750110 101750295 1.800000e-61 248.0
51 TraesCS5B01G103300 chr4A 92.000 175 13 1 3996 4169 346686995 346686821 2.330000e-60 244.0
52 TraesCS5B01G103300 chr4A 87.050 139 16 2 4862 4998 558840639 558840501 1.120000e-33 156.0
53 TraesCS5B01G103300 chr4A 81.538 130 16 5 7776 7898 512342435 512342307 5.330000e-17 100.0
54 TraesCS5B01G103300 chr1A 91.954 174 14 0 3996 4169 497183636 497183463 2.330000e-60 244.0
55 TraesCS5B01G103300 chr1A 86.667 135 15 3 4854 4987 469655105 469655237 6.740000e-31 147.0
56 TraesCS5B01G103300 chr1A 81.731 104 18 1 7871 7974 573229463 573229361 1.490000e-12 86.1
57 TraesCS5B01G103300 chr2A 91.813 171 13 1 3990 4159 488846464 488846634 3.890000e-58 237.0
58 TraesCS5B01G103300 chr2A 90.164 183 14 2 3996 4177 244298211 244298390 1.400000e-57 235.0
59 TraesCS5B01G103300 chr2A 85.792 183 22 3 1866 2044 656999302 656999484 3.070000e-44 191.0
60 TraesCS5B01G103300 chr2A 84.066 182 25 3 1867 2045 14824717 14824537 1.110000e-38 172.0
61 TraesCS5B01G103300 chr2A 78.161 174 34 2 1289 1460 700975951 700976122 3.180000e-19 108.0
62 TraesCS5B01G103300 chr2D 90.857 175 15 1 3996 4169 640017947 640017773 5.030000e-57 233.0
63 TraesCS5B01G103300 chr2D 87.097 186 18 4 1867 2048 209024691 209024508 1.100000e-48 206.0
64 TraesCS5B01G103300 chr2D 87.050 139 14 4 4849 4985 48408242 48408378 4.030000e-33 154.0
65 TraesCS5B01G103300 chr2D 85.507 138 15 5 4850 4984 567569644 567569509 1.130000e-28 139.0
66 TraesCS5B01G103300 chr2D 95.455 44 2 0 1185 1228 96679900 96679943 4.180000e-08 71.3
67 TraesCS5B01G103300 chr2D 95.455 44 2 0 1185 1228 96749687 96749730 4.180000e-08 71.3
68 TraesCS5B01G103300 chr4D 86.413 184 18 4 1866 2043 466669249 466669431 2.370000e-45 195.0
69 TraesCS5B01G103300 chr4D 74.514 463 102 12 7739 8191 63077936 63078392 3.970000e-43 187.0
70 TraesCS5B01G103300 chr4D 84.659 176 19 5 1869 2037 336131579 336131405 1.440000e-37 169.0
71 TraesCS5B01G103300 chr1D 84.772 197 26 3 1851 2045 18894798 18894992 2.370000e-45 195.0
72 TraesCS5B01G103300 chr1D 85.000 140 17 3 4850 4987 59868932 59869069 1.130000e-28 139.0
73 TraesCS5B01G103300 chr1D 82.075 106 19 0 7872 7977 10815241 10815346 3.210000e-14 91.6
74 TraesCS5B01G103300 chr6B 90.278 144 12 2 1866 2008 5789116 5788974 3.970000e-43 187.0
75 TraesCS5B01G103300 chr6B 77.128 188 43 0 1292 1479 171709518 171709331 8.850000e-20 110.0
76 TraesCS5B01G103300 chr6B 97.619 42 1 0 1186 1227 616381162 616381203 1.160000e-08 73.1
77 TraesCS5B01G103300 chr6B 97.436 39 0 1 7786 7824 686219416 686219453 1.940000e-06 65.8
78 TraesCS5B01G103300 chr6B 100.000 29 0 0 5793 5821 226138206 226138234 4.000000e-03 54.7
79 TraesCS5B01G103300 chr7D 84.358 179 20 6 1866 2040 294050733 294050907 1.440000e-37 169.0
80 TraesCS5B01G103300 chr7D 86.765 136 13 5 4854 4987 2092371 2092503 6.740000e-31 147.0
81 TraesCS5B01G103300 chr7D 85.057 87 12 1 5006 5091 587950344 587950258 4.150000e-13 87.9
82 TraesCS5B01G103300 chr7D 92.683 41 3 0 5794 5834 501086847 501086887 9.040000e-05 60.2
83 TraesCS5B01G103300 chr3D 85.714 140 16 3 4850 4987 49568580 49568443 2.430000e-30 145.0
84 TraesCS5B01G103300 chr3D 100.000 28 0 0 5400 5427 10404998 10404971 1.500000e-02 52.8
85 TraesCS5B01G103300 chr6D 80.142 141 28 0 1339 1479 89308683 89308543 1.140000e-18 106.0
86 TraesCS5B01G103300 chr6D 76.000 175 31 10 6553 6721 23080634 23080465 6.940000e-11 80.5
87 TraesCS5B01G103300 chr6A 80.142 141 28 0 1339 1479 107686182 107686042 1.140000e-18 106.0
88 TraesCS5B01G103300 chr6A 95.556 45 1 1 1191 1235 555323450 555323493 4.180000e-08 71.3
89 TraesCS5B01G103300 chr6A 84.000 75 9 3 5768 5840 574656105 574656178 1.500000e-07 69.4
90 TraesCS5B01G103300 chr1B 77.692 130 28 1 7849 7977 16239290 16239161 2.500000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G103300 chr5B 137664787 137673125 8338 True 4784.766667 10656 100.000000 1 8339 3 chr5B.!!$R1 8338
1 TraesCS5B01G103300 chr5D 124844770 124858604 13834 True 1105.444444 2582 92.380778 373 8339 9 chr5D.!!$R3 7966
2 TraesCS5B01G103300 chr5A 139074376 139084615 10239 True 917.111111 1962 90.302667 317 8339 9 chr5A.!!$R3 8022
3 TraesCS5B01G103300 chr5A 139203493 139204024 531 True 220.500000 235 88.950000 317 737 2 chr5A.!!$R4 420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.036590 GGTAAACCCTACCCGCACAA 59.963 55.000 0.00 0.00 0.00 3.33 F
49 50 0.036732 ATCACACACATTCACCGGCT 59.963 50.000 0.00 0.00 0.00 5.52 F
953 1084 0.170116 CTATCCATCGCTCTCTCGCC 59.830 60.000 0.00 0.00 0.00 5.54 F
954 1085 0.250945 TATCCATCGCTCTCTCGCCT 60.251 55.000 0.00 0.00 0.00 5.52 F
2033 2190 0.543277 TCTTAGTCGACCGAGGCCTA 59.457 55.000 13.01 0.00 0.00 3.93 F
3092 3301 0.462581 ACAGACCACAGTGCACAGTG 60.463 55.000 29.57 29.57 37.75 3.66 F
3959 4458 0.036952 AAGTGGGCAGTGTCTCATCG 60.037 55.000 0.00 0.00 0.00 3.84 F
4009 4508 0.531200 CCACGTACTCCCTCTGTTCC 59.469 60.000 0.00 0.00 0.00 3.62 F
4163 4662 0.751452 GGAACGGAGGGAGTACCATC 59.249 60.000 0.00 0.00 45.04 3.51 F
4929 5439 0.245539 CCGGGTGTTACTCGTCATGT 59.754 55.000 0.00 0.00 41.30 3.21 F
5096 5607 2.912771 TCACAACAAGATCAACCACGT 58.087 42.857 0.00 0.00 0.00 4.49 F
6198 6783 2.301296 AGAAGAGATGAGGTGTGTGTGG 59.699 50.000 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2171 0.543277 TAGGCCTCGGTCGACTAAGA 59.457 55.000 9.68 11.53 0.00 2.10 R
2015 2172 0.945813 CTAGGCCTCGGTCGACTAAG 59.054 60.000 9.68 12.54 0.00 2.18 R
2076 2233 0.535335 GACAGTTATCGACCAGGCCA 59.465 55.000 5.01 0.00 0.00 5.36 R
2238 2395 0.969894 ACTAGTCAAAGCTGCTCCGT 59.030 50.000 1.00 0.00 0.00 4.69 R
3319 3559 0.101759 CCGTCCCTTTCGATCGCTAA 59.898 55.000 11.09 6.29 0.00 3.09 R
4164 4663 0.178068 GCATCTCGCCTCCTTTGGTA 59.822 55.000 0.00 0.00 32.94 3.25 R
4884 5394 0.514255 CACAACGGAGATGCACACAG 59.486 55.000 0.00 0.00 31.73 3.66 R
4909 5419 1.082117 CATGACGAGTAACACCCGGC 61.082 60.000 0.00 0.00 0.00 6.13 R
5916 6458 1.424403 TTTAGTGTGTCGTGCCGATG 58.576 50.000 0.67 0.00 38.42 3.84 R
6177 6762 2.301296 CCACACACACCTCATCTCTTCT 59.699 50.000 0.00 0.00 0.00 2.85 R
6341 11589 3.611057 CGTAGTTTGACTCTAGCCAACGT 60.611 47.826 0.00 0.00 0.00 3.99 R
8188 18375 0.251916 CAAGGCGGTATGTTCCCTGA 59.748 55.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.818555 CCTCGGTAAACCCTACCCG 59.181 63.158 0.00 0.00 41.75 5.28
19 20 1.142531 CTCGGTAAACCCTACCCGC 59.857 63.158 0.00 0.00 40.23 6.13
20 21 1.606885 CTCGGTAAACCCTACCCGCA 61.607 60.000 0.00 0.00 40.23 5.69
21 22 1.448365 CGGTAAACCCTACCCGCAC 60.448 63.158 0.00 0.00 34.15 5.34
22 23 1.678724 GGTAAACCCTACCCGCACA 59.321 57.895 0.00 0.00 0.00 4.57
23 24 0.036590 GGTAAACCCTACCCGCACAA 59.963 55.000 0.00 0.00 0.00 3.33
24 25 1.340308 GGTAAACCCTACCCGCACAAT 60.340 52.381 0.00 0.00 0.00 2.71
25 26 2.011947 GTAAACCCTACCCGCACAATC 58.988 52.381 0.00 0.00 0.00 2.67
26 27 0.323087 AAACCCTACCCGCACAATCC 60.323 55.000 0.00 0.00 0.00 3.01
27 28 1.205460 AACCCTACCCGCACAATCCT 61.205 55.000 0.00 0.00 0.00 3.24
28 29 1.146263 CCCTACCCGCACAATCCTC 59.854 63.158 0.00 0.00 0.00 3.71
29 30 1.338136 CCCTACCCGCACAATCCTCT 61.338 60.000 0.00 0.00 0.00 3.69
30 31 1.410004 CCTACCCGCACAATCCTCTA 58.590 55.000 0.00 0.00 0.00 2.43
31 32 1.971357 CCTACCCGCACAATCCTCTAT 59.029 52.381 0.00 0.00 0.00 1.98
32 33 2.028930 CCTACCCGCACAATCCTCTATC 60.029 54.545 0.00 0.00 0.00 2.08
33 34 1.496060 ACCCGCACAATCCTCTATCA 58.504 50.000 0.00 0.00 0.00 2.15
34 35 1.139058 ACCCGCACAATCCTCTATCAC 59.861 52.381 0.00 0.00 0.00 3.06
35 36 1.138859 CCCGCACAATCCTCTATCACA 59.861 52.381 0.00 0.00 0.00 3.58
36 37 2.205074 CCGCACAATCCTCTATCACAC 58.795 52.381 0.00 0.00 0.00 3.82
37 38 2.418609 CCGCACAATCCTCTATCACACA 60.419 50.000 0.00 0.00 0.00 3.72
38 39 2.604914 CGCACAATCCTCTATCACACAC 59.395 50.000 0.00 0.00 0.00 3.82
39 40 3.599343 GCACAATCCTCTATCACACACA 58.401 45.455 0.00 0.00 0.00 3.72
40 41 4.194640 GCACAATCCTCTATCACACACAT 58.805 43.478 0.00 0.00 0.00 3.21
41 42 4.637534 GCACAATCCTCTATCACACACATT 59.362 41.667 0.00 0.00 0.00 2.71
42 43 5.220739 GCACAATCCTCTATCACACACATTC 60.221 44.000 0.00 0.00 0.00 2.67
43 44 5.876460 CACAATCCTCTATCACACACATTCA 59.124 40.000 0.00 0.00 0.00 2.57
44 45 5.877012 ACAATCCTCTATCACACACATTCAC 59.123 40.000 0.00 0.00 0.00 3.18
45 46 4.471904 TCCTCTATCACACACATTCACC 57.528 45.455 0.00 0.00 0.00 4.02
46 47 3.119137 TCCTCTATCACACACATTCACCG 60.119 47.826 0.00 0.00 0.00 4.94
47 48 3.190079 CTCTATCACACACATTCACCGG 58.810 50.000 0.00 0.00 0.00 5.28
48 49 1.665679 CTATCACACACATTCACCGGC 59.334 52.381 0.00 0.00 0.00 6.13
49 50 0.036732 ATCACACACATTCACCGGCT 59.963 50.000 0.00 0.00 0.00 5.52
50 51 0.884259 TCACACACATTCACCGGCTG 60.884 55.000 0.00 0.00 0.00 4.85
331 332 4.377370 TGGTGTCAGGTTCGCATG 57.623 55.556 0.00 0.00 0.00 4.06
332 333 1.302431 TGGTGTCAGGTTCGCATGG 60.302 57.895 0.00 0.00 0.00 3.66
333 334 2.040544 GGTGTCAGGTTCGCATGGG 61.041 63.158 2.76 2.76 0.00 4.00
335 336 3.134127 GTCAGGTTCGCATGGGCC 61.134 66.667 4.59 0.00 36.38 5.80
364 365 7.174946 CCAACTGCCTAAATATCGTCCATATTT 59.825 37.037 6.02 6.02 45.77 1.40
365 366 7.672983 ACTGCCTAAATATCGTCCATATTTG 57.327 36.000 9.63 2.75 44.31 2.32
391 392 8.444715 GTGTGAATTATGTCCGTATTTGTGTTA 58.555 33.333 0.00 0.00 0.00 2.41
392 393 9.168451 TGTGAATTATGTCCGTATTTGTGTTAT 57.832 29.630 0.00 0.00 0.00 1.89
477 478 1.102978 CCGTTCATTTGGTGATCCCC 58.897 55.000 0.00 0.00 36.54 4.81
564 567 5.862924 ACGTCCATAGAGATTGTTTTGTG 57.137 39.130 0.00 0.00 0.00 3.33
685 813 1.276622 AGAGGTTCGCTGTTACCCAT 58.723 50.000 0.00 0.00 34.90 4.00
734 862 2.746277 GAGGTCCGCCACGCAAAT 60.746 61.111 0.00 0.00 37.19 2.32
949 1080 1.742831 GATCGCTATCCATCGCTCTCT 59.257 52.381 0.00 0.00 0.00 3.10
950 1081 1.160989 TCGCTATCCATCGCTCTCTC 58.839 55.000 0.00 0.00 0.00 3.20
951 1082 0.179202 CGCTATCCATCGCTCTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
952 1083 0.455972 GCTATCCATCGCTCTCTCGC 60.456 60.000 0.00 0.00 0.00 5.03
953 1084 0.170116 CTATCCATCGCTCTCTCGCC 59.830 60.000 0.00 0.00 0.00 5.54
954 1085 0.250945 TATCCATCGCTCTCTCGCCT 60.251 55.000 0.00 0.00 0.00 5.52
955 1086 1.523154 ATCCATCGCTCTCTCGCCTC 61.523 60.000 0.00 0.00 0.00 4.70
956 1087 2.051435 CATCGCTCTCTCGCCTCG 60.051 66.667 0.00 0.00 0.00 4.63
957 1088 3.959975 ATCGCTCTCTCGCCTCGC 61.960 66.667 0.00 0.00 0.00 5.03
1521 1673 3.549827 CGTGCTTGCACCAGTCAATTAAA 60.550 43.478 18.48 0.00 0.00 1.52
1522 1674 3.983344 GTGCTTGCACCAGTCAATTAAAG 59.017 43.478 14.17 0.00 0.00 1.85
1523 1675 3.636300 TGCTTGCACCAGTCAATTAAAGT 59.364 39.130 0.00 0.00 0.00 2.66
1524 1676 4.824537 TGCTTGCACCAGTCAATTAAAGTA 59.175 37.500 0.00 0.00 0.00 2.24
1525 1677 5.048782 TGCTTGCACCAGTCAATTAAAGTAG 60.049 40.000 0.00 0.00 0.00 2.57
1526 1678 5.048713 GCTTGCACCAGTCAATTAAAGTAGT 60.049 40.000 0.00 0.00 0.00 2.73
1527 1679 6.148811 GCTTGCACCAGTCAATTAAAGTAGTA 59.851 38.462 0.00 0.00 0.00 1.82
1528 1680 7.429636 TTGCACCAGTCAATTAAAGTAGTAC 57.570 36.000 0.00 0.00 0.00 2.73
1529 1681 6.765403 TGCACCAGTCAATTAAAGTAGTACT 58.235 36.000 0.00 0.00 0.00 2.73
1825 1982 4.331962 GTTAAGTTTATCTTTGCGCGGAG 58.668 43.478 8.83 2.74 37.56 4.63
1885 2042 8.958119 TTTGTACAGTTTTGATAAGTCTCAGT 57.042 30.769 0.00 0.00 0.00 3.41
1886 2043 8.589335 TTGTACAGTTTTGATAAGTCTCAGTC 57.411 34.615 0.00 0.00 0.00 3.51
1887 2044 6.861572 TGTACAGTTTTGATAAGTCTCAGTCG 59.138 38.462 0.00 0.00 0.00 4.18
1888 2045 6.085555 ACAGTTTTGATAAGTCTCAGTCGA 57.914 37.500 0.00 0.00 0.00 4.20
1889 2046 5.921408 ACAGTTTTGATAAGTCTCAGTCGAC 59.079 40.000 7.70 7.70 0.00 4.20
1890 2047 6.153067 CAGTTTTGATAAGTCTCAGTCGACT 58.847 40.000 13.58 13.58 45.73 4.18
1891 2048 6.088749 CAGTTTTGATAAGTCTCAGTCGACTG 59.911 42.308 34.76 34.76 43.14 3.51
1905 2062 4.080969 GTCGACTGAGACTTCGTTATGT 57.919 45.455 8.70 0.00 38.09 2.29
1906 2063 4.090034 GTCGACTGAGACTTCGTTATGTC 58.910 47.826 8.70 0.00 38.09 3.06
1907 2064 4.001652 TCGACTGAGACTTCGTTATGTCT 58.998 43.478 0.00 0.00 45.06 3.41
1914 2071 5.707242 AGACTTCGTTATGTCTCAGTTGA 57.293 39.130 0.00 0.00 39.04 3.18
1915 2072 6.274157 AGACTTCGTTATGTCTCAGTTGAT 57.726 37.500 0.00 0.00 39.04 2.57
1916 2073 6.096036 AGACTTCGTTATGTCTCAGTTGATG 58.904 40.000 0.00 0.00 39.04 3.07
1917 2074 5.784177 ACTTCGTTATGTCTCAGTTGATGT 58.216 37.500 0.00 0.00 0.00 3.06
1918 2075 6.223852 ACTTCGTTATGTCTCAGTTGATGTT 58.776 36.000 0.00 0.00 0.00 2.71
1919 2076 7.375834 ACTTCGTTATGTCTCAGTTGATGTTA 58.624 34.615 0.00 0.00 0.00 2.41
1920 2077 8.035394 ACTTCGTTATGTCTCAGTTGATGTTAT 58.965 33.333 0.00 0.00 0.00 1.89
1921 2078 8.771920 TTCGTTATGTCTCAGTTGATGTTATT 57.228 30.769 0.00 0.00 0.00 1.40
1922 2079 8.771920 TCGTTATGTCTCAGTTGATGTTATTT 57.228 30.769 0.00 0.00 0.00 1.40
1923 2080 9.214957 TCGTTATGTCTCAGTTGATGTTATTTT 57.785 29.630 0.00 0.00 0.00 1.82
1924 2081 9.825972 CGTTATGTCTCAGTTGATGTTATTTTT 57.174 29.630 0.00 0.00 0.00 1.94
1929 2086 9.734620 TGTCTCAGTTGATGTTATTTTTCTTTG 57.265 29.630 0.00 0.00 0.00 2.77
1930 2087 9.950680 GTCTCAGTTGATGTTATTTTTCTTTGA 57.049 29.630 0.00 0.00 0.00 2.69
2000 2157 9.639601 TTTCTTACATACTACATCACTTGACTG 57.360 33.333 0.00 0.00 0.00 3.51
2001 2158 7.772166 TCTTACATACTACATCACTTGACTGG 58.228 38.462 0.00 0.00 0.00 4.00
2002 2159 5.344743 ACATACTACATCACTTGACTGGG 57.655 43.478 0.00 0.00 0.00 4.45
2003 2160 5.023452 ACATACTACATCACTTGACTGGGA 58.977 41.667 0.00 0.00 0.00 4.37
2004 2161 3.963428 ACTACATCACTTGACTGGGAC 57.037 47.619 0.00 0.00 0.00 4.46
2005 2162 3.511477 ACTACATCACTTGACTGGGACT 58.489 45.455 0.00 0.00 0.00 3.85
2006 2163 3.904339 ACTACATCACTTGACTGGGACTT 59.096 43.478 0.00 0.00 0.00 3.01
2007 2164 3.131709 ACATCACTTGACTGGGACTTG 57.868 47.619 0.00 0.00 0.00 3.16
2008 2165 2.224621 ACATCACTTGACTGGGACTTGG 60.225 50.000 0.00 0.00 0.00 3.61
2009 2166 1.507140 TCACTTGACTGGGACTTGGT 58.493 50.000 0.00 0.00 0.00 3.67
2010 2167 1.843851 TCACTTGACTGGGACTTGGTT 59.156 47.619 0.00 0.00 0.00 3.67
2011 2168 3.042682 TCACTTGACTGGGACTTGGTTA 58.957 45.455 0.00 0.00 0.00 2.85
2012 2169 3.456644 TCACTTGACTGGGACTTGGTTAA 59.543 43.478 0.00 0.00 0.00 2.01
2013 2170 3.815401 CACTTGACTGGGACTTGGTTAAG 59.185 47.826 0.00 0.00 39.86 1.85
2025 2182 5.131594 ACTTGGTTAAGTCTTAGTCGACC 57.868 43.478 13.01 4.76 43.53 4.79
2026 2183 3.837213 TGGTTAAGTCTTAGTCGACCG 57.163 47.619 13.01 0.99 34.46 4.79
2027 2184 3.411446 TGGTTAAGTCTTAGTCGACCGA 58.589 45.455 13.01 3.70 34.46 4.69
2028 2185 3.438087 TGGTTAAGTCTTAGTCGACCGAG 59.562 47.826 13.01 10.63 34.46 4.63
2029 2186 3.181502 GGTTAAGTCTTAGTCGACCGAGG 60.182 52.174 13.01 1.02 34.46 4.63
2030 2187 0.810016 AAGTCTTAGTCGACCGAGGC 59.190 55.000 13.01 11.99 34.46 4.70
2031 2188 1.031029 AGTCTTAGTCGACCGAGGCC 61.031 60.000 13.01 0.00 34.46 5.19
2032 2189 1.031029 GTCTTAGTCGACCGAGGCCT 61.031 60.000 3.86 3.86 0.00 5.19
2033 2190 0.543277 TCTTAGTCGACCGAGGCCTA 59.457 55.000 13.01 0.00 0.00 3.93
2034 2191 0.945813 CTTAGTCGACCGAGGCCTAG 59.054 60.000 13.01 5.21 0.00 3.02
2035 2192 1.099879 TTAGTCGACCGAGGCCTAGC 61.100 60.000 13.01 0.00 0.00 3.42
2048 2205 2.437085 GCCTAGCCACACCCTATTTT 57.563 50.000 0.00 0.00 0.00 1.82
2049 2206 2.024414 GCCTAGCCACACCCTATTTTG 58.976 52.381 0.00 0.00 0.00 2.44
2050 2207 2.620627 GCCTAGCCACACCCTATTTTGT 60.621 50.000 0.00 0.00 0.00 2.83
2051 2208 3.371166 GCCTAGCCACACCCTATTTTGTA 60.371 47.826 0.00 0.00 0.00 2.41
2052 2209 4.850680 CCTAGCCACACCCTATTTTGTAA 58.149 43.478 0.00 0.00 0.00 2.41
2066 2223 8.672823 CCTATTTTGTAAGGGGTAGTACAATC 57.327 38.462 2.06 0.00 33.20 2.67
2073 2230 9.436866 TTGTAAGGGGTAGTACAATCATATACA 57.563 33.333 2.06 0.15 0.00 2.29
2090 2247 6.609616 TCATATACATATGGCCTGGTCGATAA 59.390 38.462 3.32 0.00 40.35 1.75
2134 2291 1.521580 GATACTACTCCCTCCGTCCG 58.478 60.000 0.00 0.00 0.00 4.79
2164 2321 4.511826 CACATATTTTAGGACGGAGGAAGC 59.488 45.833 0.00 0.00 0.00 3.86
2172 2329 1.207329 GGACGGAGGAAGCAGTACAAT 59.793 52.381 0.00 0.00 0.00 2.71
2201 2358 7.173032 AGTACTTTCTCCGTCCCAAAATAAAT 58.827 34.615 0.00 0.00 0.00 1.40
2205 2362 8.520351 ACTTTCTCCGTCCCAAAATAAATAAAG 58.480 33.333 0.00 0.00 0.00 1.85
2206 2363 8.411991 TTTCTCCGTCCCAAAATAAATAAAGT 57.588 30.769 0.00 0.00 0.00 2.66
2260 2447 2.808543 CGGAGCAGCTTTGACTAGTTTT 59.191 45.455 0.00 0.00 0.00 2.43
2599 2786 9.636965 CATTTACATTATCAACTGACATGTACG 57.363 33.333 0.00 0.00 35.20 3.67
2651 2838 7.112122 TGACAAGCCATCTATATCACAGTTTT 58.888 34.615 0.00 0.00 0.00 2.43
2652 2839 7.611467 TGACAAGCCATCTATATCACAGTTTTT 59.389 33.333 0.00 0.00 0.00 1.94
2786 2973 3.696898 CCGCACTGTCAGTATCTAAGAC 58.303 50.000 4.85 0.00 0.00 3.01
2973 3172 1.143305 CTGAGGACACTGTTTCTGCG 58.857 55.000 0.00 0.00 0.00 5.18
3077 3286 1.228583 ACGAGAGAGTGGCCACAGA 60.229 57.895 36.39 0.00 0.00 3.41
3078 3287 1.214062 CGAGAGAGTGGCCACAGAC 59.786 63.158 36.39 25.28 0.00 3.51
3079 3288 1.594310 GAGAGAGTGGCCACAGACC 59.406 63.158 36.39 21.41 0.00 3.85
3080 3289 1.152247 AGAGAGTGGCCACAGACCA 60.152 57.895 36.39 0.00 33.84 4.02
3092 3301 0.462581 ACAGACCACAGTGCACAGTG 60.463 55.000 29.57 29.57 37.75 3.66
3172 3412 2.173669 GTGACGATGCACCGATGGG 61.174 63.158 7.92 0.00 40.11 4.00
3282 3522 3.788766 GCACGCATGTCGGTGGAC 61.789 66.667 12.85 0.00 43.86 4.02
3294 3534 2.741092 GTGGACGTTGGCCAGAGA 59.259 61.111 5.11 0.00 35.77 3.10
3319 3559 2.302157 GAGCCAAGTGTAGGTAAGTGGT 59.698 50.000 0.00 0.00 0.00 4.16
3390 3635 1.741401 CCATGCATGTGACGACCGT 60.741 57.895 24.58 0.00 0.00 4.83
3408 3653 3.272334 GCCGGTCGATGCATGGTC 61.272 66.667 2.46 0.00 0.00 4.02
3505 3754 0.387929 CATACGGCCCTTTCGAGCTA 59.612 55.000 0.00 0.00 0.00 3.32
3624 3994 8.438676 AGCAAGTCATACAAGGTAATATGAAC 57.561 34.615 0.00 0.00 39.04 3.18
3631 4001 9.542462 TCATACAAGGTAATATGAACAGCTAAC 57.458 33.333 0.00 0.00 35.39 2.34
3638 4123 9.375974 AGGTAATATGAACAGCTAACATACCTA 57.624 33.333 13.45 6.14 32.34 3.08
3722 4207 5.695851 ATTAACAAACAGCTGACTTCTGG 57.304 39.130 23.35 4.81 35.94 3.86
3774 4259 9.366216 AGAAATCTAAAAGGAAACAACAACAAC 57.634 29.630 0.00 0.00 0.00 3.32
3775 4260 9.145865 GAAATCTAAAAGGAAACAACAACAACA 57.854 29.630 0.00 0.00 0.00 3.33
3776 4261 9.495572 AAATCTAAAAGGAAACAACAACAACAA 57.504 25.926 0.00 0.00 0.00 2.83
3777 4262 7.876896 TCTAAAAGGAAACAACAACAACAAC 57.123 32.000 0.00 0.00 0.00 3.32
3778 4263 7.434492 TCTAAAAGGAAACAACAACAACAACA 58.566 30.769 0.00 0.00 0.00 3.33
3779 4264 6.927294 AAAAGGAAACAACAACAACAACAA 57.073 29.167 0.00 0.00 0.00 2.83
3959 4458 0.036952 AAGTGGGCAGTGTCTCATCG 60.037 55.000 0.00 0.00 0.00 3.84
3999 4498 8.303156 TGATCTATCTAGTACTACCACGTACTC 58.697 40.741 6.87 0.00 45.05 2.59
4000 4499 6.987386 TCTATCTAGTACTACCACGTACTCC 58.013 44.000 6.87 0.00 45.05 3.85
4002 4501 4.033709 TCTAGTACTACCACGTACTCCCT 58.966 47.826 6.87 0.00 45.05 4.20
4003 4502 3.274095 AGTACTACCACGTACTCCCTC 57.726 52.381 0.00 0.00 45.05 4.30
4004 4503 2.843113 AGTACTACCACGTACTCCCTCT 59.157 50.000 0.00 0.00 45.05 3.69
4005 4504 2.125773 ACTACCACGTACTCCCTCTG 57.874 55.000 0.00 0.00 0.00 3.35
4006 4505 1.353694 ACTACCACGTACTCCCTCTGT 59.646 52.381 0.00 0.00 0.00 3.41
4007 4506 2.224967 ACTACCACGTACTCCCTCTGTT 60.225 50.000 0.00 0.00 0.00 3.16
4008 4507 1.254954 ACCACGTACTCCCTCTGTTC 58.745 55.000 0.00 0.00 0.00 3.18
4009 4508 0.531200 CCACGTACTCCCTCTGTTCC 59.469 60.000 0.00 0.00 0.00 3.62
4010 4509 1.546961 CACGTACTCCCTCTGTTCCT 58.453 55.000 0.00 0.00 0.00 3.36
4011 4510 2.619849 CCACGTACTCCCTCTGTTCCTA 60.620 54.545 0.00 0.00 0.00 2.94
4012 4511 3.087031 CACGTACTCCCTCTGTTCCTAA 58.913 50.000 0.00 0.00 0.00 2.69
4013 4512 3.508793 CACGTACTCCCTCTGTTCCTAAA 59.491 47.826 0.00 0.00 0.00 1.85
4014 4513 4.159879 CACGTACTCCCTCTGTTCCTAAAT 59.840 45.833 0.00 0.00 0.00 1.40
4015 4514 5.359009 CACGTACTCCCTCTGTTCCTAAATA 59.641 44.000 0.00 0.00 0.00 1.40
4016 4515 6.040616 CACGTACTCCCTCTGTTCCTAAATAT 59.959 42.308 0.00 0.00 0.00 1.28
4017 4516 6.610425 ACGTACTCCCTCTGTTCCTAAATATT 59.390 38.462 0.00 0.00 0.00 1.28
4018 4517 7.125356 ACGTACTCCCTCTGTTCCTAAATATTT 59.875 37.037 5.89 5.89 0.00 1.40
4019 4518 7.438459 CGTACTCCCTCTGTTCCTAAATATTTG 59.562 40.741 11.05 1.40 0.00 2.32
4020 4519 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
4021 4520 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
4022 4521 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
4023 4522 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
4024 4523 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
4025 4524 8.678199 CCCTCTGTTCCTAAATATTTGTCTTTC 58.322 37.037 11.05 0.00 0.00 2.62
4026 4525 9.454859 CCTCTGTTCCTAAATATTTGTCTTTCT 57.545 33.333 11.05 0.00 0.00 2.52
4057 4556 8.703604 TTTCAATAAGTGACTACATACAGAGC 57.296 34.615 0.00 0.00 35.39 4.09
4058 4557 7.404671 TCAATAAGTGACTACATACAGAGCA 57.595 36.000 0.00 0.00 0.00 4.26
4059 4558 7.836842 TCAATAAGTGACTACATACAGAGCAA 58.163 34.615 0.00 0.00 0.00 3.91
4060 4559 8.311109 TCAATAAGTGACTACATACAGAGCAAA 58.689 33.333 0.00 0.00 0.00 3.68
4061 4560 8.935844 CAATAAGTGACTACATACAGAGCAAAA 58.064 33.333 0.00 0.00 0.00 2.44
4062 4561 9.672673 AATAAGTGACTACATACAGAGCAAAAT 57.327 29.630 0.00 0.00 0.00 1.82
4063 4562 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
4064 4563 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
4065 4564 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
4066 4565 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
4067 4566 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
4068 4567 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
4069 4568 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
4070 4569 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
4071 4570 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
4072 4571 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
4073 4572 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
4074 4573 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
4075 4574 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
4076 4575 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
4116 4615 7.946655 CATACATCCGTATGTTGAGTACATT 57.053 36.000 0.00 0.00 45.19 2.71
4117 4616 8.365399 CATACATCCGTATGTTGAGTACATTT 57.635 34.615 0.00 0.00 45.19 2.32
4118 4617 9.471084 CATACATCCGTATGTTGAGTACATTTA 57.529 33.333 0.00 0.00 45.19 1.40
4120 4619 8.780846 ACATCCGTATGTTGAGTACATTTAAA 57.219 30.769 0.00 0.00 45.19 1.52
4121 4620 9.221933 ACATCCGTATGTTGAGTACATTTAAAA 57.778 29.630 0.00 0.00 45.19 1.52
4124 4623 8.178964 TCCGTATGTTGAGTACATTTAAAATGC 58.821 33.333 0.00 0.00 45.19 3.56
4125 4624 7.431084 CCGTATGTTGAGTACATTTAAAATGCC 59.569 37.037 0.00 0.00 45.19 4.40
4126 4625 8.181573 CGTATGTTGAGTACATTTAAAATGCCT 58.818 33.333 0.00 0.00 45.19 4.75
4129 4628 8.856153 TGTTGAGTACATTTAAAATGCCTAGA 57.144 30.769 0.00 0.00 0.00 2.43
4130 4629 9.290988 TGTTGAGTACATTTAAAATGCCTAGAA 57.709 29.630 0.00 0.00 0.00 2.10
4133 4632 9.733556 TGAGTACATTTAAAATGCCTAGAAAGA 57.266 29.630 0.00 0.00 0.00 2.52
4134 4633 9.989869 GAGTACATTTAAAATGCCTAGAAAGAC 57.010 33.333 0.00 0.00 0.00 3.01
4135 4634 9.515226 AGTACATTTAAAATGCCTAGAAAGACA 57.485 29.630 0.00 0.00 0.00 3.41
4144 4643 9.573133 AAAATGCCTAGAAAGACAATTATTTCG 57.427 29.630 0.00 0.00 39.78 3.46
4145 4644 6.677781 TGCCTAGAAAGACAATTATTTCGG 57.322 37.500 0.00 3.56 39.78 4.30
4146 4645 6.411376 TGCCTAGAAAGACAATTATTTCGGA 58.589 36.000 0.00 0.00 39.78 4.55
4147 4646 6.882140 TGCCTAGAAAGACAATTATTTCGGAA 59.118 34.615 0.00 0.00 39.78 4.30
4148 4647 7.148306 TGCCTAGAAAGACAATTATTTCGGAAC 60.148 37.037 0.00 0.00 39.78 3.62
4161 4660 4.447734 GGAACGGAGGGAGTACCA 57.552 61.111 0.00 0.00 43.89 3.25
4162 4661 2.912020 GGAACGGAGGGAGTACCAT 58.088 57.895 0.00 0.00 43.89 3.55
4163 4662 0.751452 GGAACGGAGGGAGTACCATC 59.249 60.000 0.00 0.00 45.04 3.51
4164 4663 1.688627 GGAACGGAGGGAGTACCATCT 60.689 57.143 0.00 0.00 45.10 2.90
4217 4716 1.831343 CGTGAATTAATGCAGCTGGC 58.169 50.000 17.12 8.54 45.13 4.85
4248 4747 4.071961 TGTGATGCACTTGACAGTACTT 57.928 40.909 0.00 0.00 35.11 2.24
4445 4944 2.037251 TCCCAACAAGAGTACACTGCTC 59.963 50.000 0.00 0.00 0.00 4.26
4502 5001 1.696063 ATGCCACAAAGTGAGCTGTT 58.304 45.000 0.00 0.00 35.23 3.16
4559 5058 1.937391 GCTAGCTAGCGCACAATGG 59.063 57.895 28.89 0.00 39.82 3.16
4683 5182 0.774908 TGGGAAAGATCAACCGGGTT 59.225 50.000 6.59 6.59 0.00 4.11
4727 5226 1.069568 TGTTTCACGTAGCATTTGCCG 60.070 47.619 0.00 0.00 43.38 5.69
4748 5257 3.117963 CGGTTAGGAGGGAGAGAGTCTAA 60.118 52.174 0.00 0.00 0.00 2.10
4790 5299 6.210287 TGCATGCATGACAAAATATTCTCA 57.790 33.333 30.64 10.52 0.00 3.27
4791 5300 6.631962 TGCATGCATGACAAAATATTCTCAA 58.368 32.000 30.64 0.00 0.00 3.02
4799 5308 5.714806 TGACAAAATATTCTCAAACCTCCCC 59.285 40.000 0.00 0.00 0.00 4.81
4810 5319 2.821969 CAAACCTCCCCATGAACAAGAG 59.178 50.000 0.00 0.00 0.00 2.85
4860 5369 6.435430 TGGATGACTCGGTTATTTTCATTG 57.565 37.500 0.00 0.00 0.00 2.82
4884 5394 2.165437 TGTCAGACTTTTGGTGTTTGGC 59.835 45.455 1.31 0.00 0.00 4.52
4896 5406 0.953727 TGTTTGGCTGTGTGCATCTC 59.046 50.000 0.00 0.00 45.15 2.75
4898 5408 1.236616 TTTGGCTGTGTGCATCTCCG 61.237 55.000 0.00 0.00 45.15 4.63
4901 5411 1.499056 GCTGTGTGCATCTCCGTTG 59.501 57.895 0.00 0.00 42.31 4.10
4904 5414 1.207593 GTGTGCATCTCCGTTGTGC 59.792 57.895 0.00 0.00 39.26 4.57
4908 5418 0.671472 TGCATCTCCGTTGTGCAGAG 60.671 55.000 0.00 0.00 43.30 3.35
4909 5419 1.364626 GCATCTCCGTTGTGCAGAGG 61.365 60.000 0.00 0.00 38.68 3.69
4923 5433 2.183555 GAGGCCGGGTGTTACTCG 59.816 66.667 2.18 0.00 42.83 4.18
4929 5439 0.245539 CCGGGTGTTACTCGTCATGT 59.754 55.000 0.00 0.00 41.30 3.21
4942 5452 4.627467 ACTCGTCATGTTTTGTATCTGCTC 59.373 41.667 0.00 0.00 0.00 4.26
5086 5597 3.990469 GCGAGAAGATCTTCACAACAAGA 59.010 43.478 31.79 0.00 41.84 3.02
5094 5605 5.695851 ATCTTCACAACAAGATCAACCAC 57.304 39.130 0.00 0.00 38.53 4.16
5096 5607 2.912771 TCACAACAAGATCAACCACGT 58.087 42.857 0.00 0.00 0.00 4.49
5244 5755 6.706716 ACAAATCAATCAATGTGTGAAATGCA 59.293 30.769 0.00 0.00 40.50 3.96
5258 5769 3.002246 TGAAATGCACACGAAGAACTGAC 59.998 43.478 0.00 0.00 0.00 3.51
5267 5778 5.635280 CACACGAAGAACTGACATCACTTAT 59.365 40.000 0.00 0.00 0.00 1.73
5269 5780 6.807230 ACACGAAGAACTGACATCACTTATAC 59.193 38.462 0.00 0.00 0.00 1.47
5272 5783 7.030165 CGAAGAACTGACATCACTTATACTGT 58.970 38.462 0.00 0.00 0.00 3.55
5273 5784 8.182227 CGAAGAACTGACATCACTTATACTGTA 58.818 37.037 0.00 0.00 0.00 2.74
5274 5785 9.291664 GAAGAACTGACATCACTTATACTGTAC 57.708 37.037 0.00 0.00 0.00 2.90
5275 5786 8.349568 AGAACTGACATCACTTATACTGTACA 57.650 34.615 0.00 0.00 0.00 2.90
5276 5787 8.972127 AGAACTGACATCACTTATACTGTACAT 58.028 33.333 0.00 0.00 0.00 2.29
5327 5838 9.790344 CAAATATTATCTCTCAGAAGGGTTCAT 57.210 33.333 0.00 0.00 0.00 2.57
5335 5846 6.441924 TCTCTCAGAAGGGTTCATATCAGTTT 59.558 38.462 0.00 0.00 0.00 2.66
5338 5849 6.173339 TCAGAAGGGTTCATATCAGTTTCAC 58.827 40.000 0.00 0.00 0.00 3.18
5499 6013 8.474025 TGGTGTTTGAAATGAGTGAAATTAGTT 58.526 29.630 0.00 0.00 0.00 2.24
5543 6057 5.382616 CTTTTTAGGTTAGTGGAAGTGGGT 58.617 41.667 0.00 0.00 0.00 4.51
5552 6066 6.443792 GTTAGTGGAAGTGGGTTTTAATGTG 58.556 40.000 0.00 0.00 0.00 3.21
5559 6073 6.015434 GGAAGTGGGTTTTAATGTGTGAATCT 60.015 38.462 0.00 0.00 0.00 2.40
5561 6075 5.833131 AGTGGGTTTTAATGTGTGAATCTGT 59.167 36.000 0.00 0.00 0.00 3.41
5562 6076 6.323739 AGTGGGTTTTAATGTGTGAATCTGTT 59.676 34.615 0.00 0.00 0.00 3.16
5699 6214 9.965824 TTTCACTTATTCAAGAACTCCAATTTC 57.034 29.630 0.00 0.00 35.60 2.17
5700 6215 8.690203 TCACTTATTCAAGAACTCCAATTTCA 57.310 30.769 0.00 0.00 35.60 2.69
5701 6216 8.567948 TCACTTATTCAAGAACTCCAATTTCAC 58.432 33.333 0.00 0.00 35.60 3.18
5702 6217 8.571336 CACTTATTCAAGAACTCCAATTTCACT 58.429 33.333 0.00 0.00 35.60 3.41
5703 6218 9.136323 ACTTATTCAAGAACTCCAATTTCACTT 57.864 29.630 0.00 0.00 35.60 3.16
5945 6487 5.668866 GCACGACACACTAAAATAAGCAGAG 60.669 44.000 0.00 0.00 0.00 3.35
5958 6500 6.882610 AATAAGCAGAGTCACACATTGAAA 57.117 33.333 0.00 0.00 35.39 2.69
5959 6501 7.458409 AATAAGCAGAGTCACACATTGAAAT 57.542 32.000 0.00 0.00 35.39 2.17
5960 6502 8.565896 AATAAGCAGAGTCACACATTGAAATA 57.434 30.769 0.00 0.00 35.39 1.40
5961 6503 6.492007 AAGCAGAGTCACACATTGAAATAG 57.508 37.500 0.00 0.00 35.39 1.73
6142 6727 3.030291 AGAAGAGAGTGGGCTGTCATAG 58.970 50.000 0.00 0.00 37.47 2.23
6177 6762 2.360483 GCATGTGAGGAGAGAGATCGAA 59.640 50.000 0.00 0.00 0.00 3.71
6198 6783 2.301296 AGAAGAGATGAGGTGTGTGTGG 59.699 50.000 0.00 0.00 0.00 4.17
6288 11535 3.068590 GGGGTGCATGAATATCAAAGTGG 59.931 47.826 0.00 0.00 0.00 4.00
6341 11589 2.813172 CCCGCCGTTAAAAACCTCTTTA 59.187 45.455 0.00 0.00 0.00 1.85
6437 11685 8.910944 ACACGAATAACACTATATAGAACACCT 58.089 33.333 16.79 0.00 0.00 4.00
6440 11688 8.794553 CGAATAACACTATATAGAACACCTCCT 58.205 37.037 16.79 0.00 0.00 3.69
6442 11690 6.636562 AACACTATATAGAACACCTCCTCG 57.363 41.667 16.79 0.00 0.00 4.63
6443 11691 4.519730 ACACTATATAGAACACCTCCTCGC 59.480 45.833 16.79 0.00 0.00 5.03
6625 11874 3.991773 CACTTGCATCCAAAGTTTCATGG 59.008 43.478 0.00 0.00 38.09 3.66
6628 11877 2.299582 TGCATCCAAAGTTTCATGGTGG 59.700 45.455 0.00 0.00 37.94 4.61
6769 12019 2.423538 ACTTTCCACACAGCTGAAACAC 59.576 45.455 23.35 0.00 0.00 3.32
6863 12113 2.146342 CTGTTCACGGAGAAACTGCAT 58.854 47.619 0.00 0.00 38.13 3.96
7346 12598 3.181516 GCCGTCAACTCATGAACTGATTC 60.182 47.826 9.07 0.00 40.50 2.52
7386 12638 0.030638 ACGCTGTGATGTTTTGGTGC 59.969 50.000 0.00 0.00 0.00 5.01
7453 12724 1.140852 CATGAGGGGAGCCGTAATGAA 59.859 52.381 0.00 0.00 33.34 2.57
7454 12725 1.507140 TGAGGGGAGCCGTAATGAAT 58.493 50.000 0.00 0.00 0.00 2.57
7455 12726 1.140852 TGAGGGGAGCCGTAATGAATG 59.859 52.381 0.00 0.00 0.00 2.67
7456 12727 1.416401 GAGGGGAGCCGTAATGAATGA 59.584 52.381 0.00 0.00 0.00 2.57
7457 12728 2.039084 GAGGGGAGCCGTAATGAATGAT 59.961 50.000 0.00 0.00 0.00 2.45
7458 12729 2.039084 AGGGGAGCCGTAATGAATGATC 59.961 50.000 0.00 0.00 0.00 2.92
7459 12730 2.224523 GGGGAGCCGTAATGAATGATCA 60.225 50.000 0.00 0.00 40.57 2.92
7460 12731 3.070018 GGGAGCCGTAATGAATGATCAG 58.930 50.000 0.09 0.00 39.39 2.90
7461 12732 3.070018 GGAGCCGTAATGAATGATCAGG 58.930 50.000 0.09 0.00 39.39 3.86
7462 12733 2.481952 GAGCCGTAATGAATGATCAGGC 59.518 50.000 9.68 9.68 41.28 4.85
7463 12734 1.537202 GCCGTAATGAATGATCAGGCC 59.463 52.381 0.09 0.00 39.39 5.19
7464 12735 1.800586 CCGTAATGAATGATCAGGCCG 59.199 52.381 0.09 0.00 39.39 6.13
7465 12736 1.800586 CGTAATGAATGATCAGGCCGG 59.199 52.381 0.09 0.00 39.39 6.13
7466 12737 1.537202 GTAATGAATGATCAGGCCGGC 59.463 52.381 21.18 21.18 39.39 6.13
7467 12738 0.106569 AATGAATGATCAGGCCGGCA 60.107 50.000 30.85 8.42 39.39 5.69
7468 12739 0.111832 ATGAATGATCAGGCCGGCAT 59.888 50.000 30.85 21.35 39.39 4.40
7469 12740 0.535780 TGAATGATCAGGCCGGCATC 60.536 55.000 30.85 22.60 0.00 3.91
7470 12741 1.228367 AATGATCAGGCCGGCATCC 60.228 57.895 30.85 11.48 0.00 3.51
7471 12742 1.713005 AATGATCAGGCCGGCATCCT 61.713 55.000 30.85 14.02 0.00 3.24
7472 12743 2.031768 GATCAGGCCGGCATCCTC 59.968 66.667 30.85 16.21 0.00 3.71
7473 12744 2.769621 ATCAGGCCGGCATCCTCA 60.770 61.111 30.85 2.11 0.00 3.86
7474 12745 2.329539 GATCAGGCCGGCATCCTCAA 62.330 60.000 30.85 7.00 0.00 3.02
7475 12746 1.925285 ATCAGGCCGGCATCCTCAAA 61.925 55.000 30.85 4.27 0.00 2.69
7476 12747 1.678635 CAGGCCGGCATCCTCAAAA 60.679 57.895 30.85 0.00 0.00 2.44
7477 12748 1.076549 AGGCCGGCATCCTCAAAAA 59.923 52.632 30.85 0.00 0.00 1.94
7592 12866 4.940654 TCGAGTTGCATAATTTGTGGATGA 59.059 37.500 0.00 0.00 0.00 2.92
7838 16415 1.973281 CAGGCCACCGAGCAACAAT 60.973 57.895 5.01 0.00 0.00 2.71
7864 16441 2.821969 AGCATTGAAGCGAACCAAAGAT 59.178 40.909 0.00 0.00 40.15 2.40
7865 16442 2.919229 GCATTGAAGCGAACCAAAGATG 59.081 45.455 0.00 0.00 0.00 2.90
7891 16468 2.143419 GTCATCGCCCCTCCCTCAT 61.143 63.158 0.00 0.00 0.00 2.90
7931 18118 8.387813 ACCTTGTTATAGTAGATTGTTGGGAAA 58.612 33.333 0.00 0.00 0.00 3.13
7945 18132 4.218200 TGTTGGGAAATCGTCGTACTAAGA 59.782 41.667 0.00 0.00 0.00 2.10
7948 18135 3.379688 GGGAAATCGTCGTACTAAGACCT 59.620 47.826 0.00 0.00 35.33 3.85
7961 18148 0.251653 AAGACCTCGTAGGACCAGCA 60.252 55.000 7.76 0.00 37.67 4.41
7966 18153 2.126071 CGTAGGACCAGCACACCG 60.126 66.667 0.00 0.00 0.00 4.94
7976 18163 0.667993 CAGCACACCGGAACAACAAT 59.332 50.000 9.46 0.00 0.00 2.71
7977 18164 1.066908 CAGCACACCGGAACAACAATT 59.933 47.619 9.46 0.00 0.00 2.32
7989 18176 4.396166 GGAACAACAATTGTCTCCGATGAT 59.604 41.667 12.39 0.00 44.59 2.45
8084 18271 2.140717 CCAACGAGGACAACCACTAAC 58.859 52.381 0.00 0.00 41.22 2.34
8089 18276 2.410939 GAGGACAACCACTAACCGAAC 58.589 52.381 0.00 0.00 38.94 3.95
8117 18304 2.894126 AGATCCGTCAGAGACACAACTT 59.106 45.455 0.00 0.00 32.09 2.66
8155 18342 2.910479 TAGACGCATCGCCGGGAT 60.910 61.111 2.18 0.88 35.09 3.85
8188 18375 5.339282 GGCTAGAAGAACCTTATTCCACCTT 60.339 44.000 0.00 0.00 0.00 3.50
8211 18398 1.339727 GGGAACATACCGCCTTGTCTT 60.340 52.381 0.00 0.00 0.00 3.01
8215 18402 1.349688 ACATACCGCCTTGTCTTCCAA 59.650 47.619 0.00 0.00 0.00 3.53
8217 18404 2.642154 TACCGCCTTGTCTTCCAAAA 57.358 45.000 0.00 0.00 31.20 2.44
8246 18433 5.051816 CACAAACTGTAACTAAACTCGGGA 58.948 41.667 0.00 0.00 0.00 5.14
8259 18446 2.842457 ACTCGGGAAAAACACCTACAC 58.158 47.619 0.00 0.00 0.00 2.90
8283 18470 0.905357 AGATCTCCCACCGACAAAGG 59.095 55.000 0.00 0.00 37.30 3.11
8296 18483 2.938798 AAAGGCCGGGACCCATCA 60.939 61.111 12.15 0.00 0.00 3.07
8328 18515 0.672401 CCTAAAGAAACGGCAGGCGA 60.672 55.000 25.17 0.00 0.00 5.54
8332 18519 2.358247 GAAACGGCAGGCGAAGGA 60.358 61.111 25.17 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.036590 TTGTGCGGGTAGGGTTTACC 59.963 55.000 0.00 0.00 40.67 2.85
5 6 2.011947 GATTGTGCGGGTAGGGTTTAC 58.988 52.381 0.00 0.00 0.00 2.01
6 7 1.065272 GGATTGTGCGGGTAGGGTTTA 60.065 52.381 0.00 0.00 0.00 2.01
7 8 0.323087 GGATTGTGCGGGTAGGGTTT 60.323 55.000 0.00 0.00 0.00 3.27
8 9 1.205460 AGGATTGTGCGGGTAGGGTT 61.205 55.000 0.00 0.00 0.00 4.11
9 10 1.615424 AGGATTGTGCGGGTAGGGT 60.615 57.895 0.00 0.00 0.00 4.34
10 11 1.146263 GAGGATTGTGCGGGTAGGG 59.854 63.158 0.00 0.00 0.00 3.53
11 12 1.410004 TAGAGGATTGTGCGGGTAGG 58.590 55.000 0.00 0.00 0.00 3.18
12 13 2.628178 TGATAGAGGATTGTGCGGGTAG 59.372 50.000 0.00 0.00 0.00 3.18
13 14 2.364324 GTGATAGAGGATTGTGCGGGTA 59.636 50.000 0.00 0.00 0.00 3.69
14 15 1.139058 GTGATAGAGGATTGTGCGGGT 59.861 52.381 0.00 0.00 0.00 5.28
15 16 1.138859 TGTGATAGAGGATTGTGCGGG 59.861 52.381 0.00 0.00 0.00 6.13
16 17 2.205074 GTGTGATAGAGGATTGTGCGG 58.795 52.381 0.00 0.00 0.00 5.69
17 18 2.604914 GTGTGTGATAGAGGATTGTGCG 59.395 50.000 0.00 0.00 0.00 5.34
18 19 3.599343 TGTGTGTGATAGAGGATTGTGC 58.401 45.455 0.00 0.00 0.00 4.57
19 20 5.876460 TGAATGTGTGTGATAGAGGATTGTG 59.124 40.000 0.00 0.00 0.00 3.33
20 21 5.877012 GTGAATGTGTGTGATAGAGGATTGT 59.123 40.000 0.00 0.00 0.00 2.71
21 22 5.295292 GGTGAATGTGTGTGATAGAGGATTG 59.705 44.000 0.00 0.00 0.00 2.67
22 23 5.431765 GGTGAATGTGTGTGATAGAGGATT 58.568 41.667 0.00 0.00 0.00 3.01
23 24 4.442052 CGGTGAATGTGTGTGATAGAGGAT 60.442 45.833 0.00 0.00 0.00 3.24
24 25 3.119137 CGGTGAATGTGTGTGATAGAGGA 60.119 47.826 0.00 0.00 0.00 3.71
25 26 3.190079 CGGTGAATGTGTGTGATAGAGG 58.810 50.000 0.00 0.00 0.00 3.69
26 27 3.190079 CCGGTGAATGTGTGTGATAGAG 58.810 50.000 0.00 0.00 0.00 2.43
27 28 2.676750 GCCGGTGAATGTGTGTGATAGA 60.677 50.000 1.90 0.00 0.00 1.98
28 29 1.665679 GCCGGTGAATGTGTGTGATAG 59.334 52.381 1.90 0.00 0.00 2.08
29 30 1.277842 AGCCGGTGAATGTGTGTGATA 59.722 47.619 1.90 0.00 0.00 2.15
30 31 0.036732 AGCCGGTGAATGTGTGTGAT 59.963 50.000 1.90 0.00 0.00 3.06
31 32 0.884259 CAGCCGGTGAATGTGTGTGA 60.884 55.000 1.90 0.00 0.00 3.58
32 33 1.575922 CAGCCGGTGAATGTGTGTG 59.424 57.895 1.90 0.00 0.00 3.82
33 34 4.063529 CAGCCGGTGAATGTGTGT 57.936 55.556 1.90 0.00 0.00 3.72
314 315 1.302431 CCATGCGAACCTGACACCA 60.302 57.895 0.00 0.00 0.00 4.17
315 316 2.040544 CCCATGCGAACCTGACACC 61.041 63.158 0.00 0.00 0.00 4.16
332 333 1.780503 ATTTAGGCAGTTGGATGGCC 58.219 50.000 0.00 0.00 46.42 5.36
333 334 3.189287 CGATATTTAGGCAGTTGGATGGC 59.811 47.826 0.00 0.00 45.63 4.40
335 336 4.452455 GGACGATATTTAGGCAGTTGGATG 59.548 45.833 0.00 0.00 0.00 3.51
364 365 6.428465 ACACAAATACGGACATAATTCACACA 59.572 34.615 0.00 0.00 0.00 3.72
365 366 6.837992 ACACAAATACGGACATAATTCACAC 58.162 36.000 0.00 0.00 0.00 3.82
391 392 7.383156 AATTGCCCTCATTTGAAATGGATAT 57.617 32.000 17.01 1.78 0.00 1.63
392 393 6.811634 AATTGCCCTCATTTGAAATGGATA 57.188 33.333 17.01 0.00 0.00 2.59
477 478 2.644992 GCAAGGGCAACTCCAACG 59.355 61.111 0.00 0.00 40.72 4.10
564 567 6.667007 GCTACTGCCTAGCTAGTATAGTAC 57.333 45.833 19.31 13.16 44.24 2.73
601 708 1.136984 CGTCGCCAGTACAGAGACC 59.863 63.158 12.09 0.00 0.00 3.85
637 765 2.125753 CAGCTCCAGTGCTCCGAC 60.126 66.667 0.00 0.00 41.98 4.79
756 884 1.141019 GCTAGCCGTCCGATTGTCA 59.859 57.895 2.29 0.00 0.00 3.58
786 914 1.486211 CGGTGAGGTCCCAAGTAGAT 58.514 55.000 0.00 0.00 0.00 1.98
951 1082 2.583593 GAGTGATGGTCGCGAGGC 60.584 66.667 10.24 0.00 30.95 4.70
952 1083 2.278206 CGAGTGATGGTCGCGAGG 60.278 66.667 10.24 0.00 30.95 4.63
966 1097 1.939785 GCACGTAGGATGACGCGAG 60.940 63.158 15.93 0.00 46.87 5.03
1383 1535 1.153369 CCTTGGCGGTGTCGATGAT 60.153 57.895 0.00 0.00 39.00 2.45
1521 1673 8.082852 GCATGCATACATTGTACTAGTACTACT 58.917 37.037 28.56 15.15 34.03 2.57
1522 1674 7.865889 TGCATGCATACATTGTACTAGTACTAC 59.134 37.037 28.56 10.55 34.03 2.73
1523 1675 7.947282 TGCATGCATACATTGTACTAGTACTA 58.053 34.615 28.56 23.25 34.03 1.82
1524 1676 6.816136 TGCATGCATACATTGTACTAGTACT 58.184 36.000 28.56 14.41 34.03 2.73
1525 1677 7.171508 ACATGCATGCATACATTGTACTAGTAC 59.828 37.037 31.73 23.58 32.87 2.73
1526 1678 7.216494 ACATGCATGCATACATTGTACTAGTA 58.784 34.615 31.73 0.00 32.87 1.82
1527 1679 6.057533 ACATGCATGCATACATTGTACTAGT 58.942 36.000 31.73 17.76 32.87 2.57
1528 1680 6.549912 ACATGCATGCATACATTGTACTAG 57.450 37.500 31.73 17.13 32.87 2.57
1529 1681 6.145371 CGTACATGCATGCATACATTGTACTA 59.855 38.462 35.34 18.19 41.57 1.82
1866 2023 6.382821 GTCGACTGAGACTTATCAAAACTG 57.617 41.667 8.70 0.00 38.09 3.16
1881 2038 1.880271 ACGAAGTCTCAGTCGACTGA 58.120 50.000 38.24 38.24 44.92 3.41
1882 2039 2.690173 AACGAAGTCTCAGTCGACTG 57.310 50.000 34.76 34.76 45.00 3.51
1883 2040 3.752222 ACATAACGAAGTCTCAGTCGACT 59.248 43.478 13.58 13.58 45.00 4.18
1884 2041 4.080969 ACATAACGAAGTCTCAGTCGAC 57.919 45.455 7.70 7.70 45.00 4.20
1885 2042 4.001652 AGACATAACGAAGTCTCAGTCGA 58.998 43.478 0.00 0.00 45.00 4.20
1886 2043 4.343811 AGACATAACGAAGTCTCAGTCG 57.656 45.455 0.00 0.00 45.00 4.18
1892 2049 5.707242 TCAACTGAGACATAACGAAGTCT 57.293 39.130 0.00 0.00 45.00 3.24
1893 2050 5.864474 ACATCAACTGAGACATAACGAAGTC 59.136 40.000 0.00 0.00 45.00 3.01
1895 2052 6.712241 AACATCAACTGAGACATAACGAAG 57.288 37.500 0.00 0.00 0.00 3.79
1896 2053 8.771920 AATAACATCAACTGAGACATAACGAA 57.228 30.769 0.00 0.00 0.00 3.85
1897 2054 8.771920 AAATAACATCAACTGAGACATAACGA 57.228 30.769 0.00 0.00 0.00 3.85
1898 2055 9.825972 AAAAATAACATCAACTGAGACATAACG 57.174 29.630 0.00 0.00 0.00 3.18
1903 2060 9.734620 CAAAGAAAAATAACATCAACTGAGACA 57.265 29.630 0.00 0.00 0.00 3.41
1904 2061 9.950680 TCAAAGAAAAATAACATCAACTGAGAC 57.049 29.630 0.00 0.00 0.00 3.36
1974 2131 9.639601 CAGTCAAGTGATGTAGTATGTAAGAAA 57.360 33.333 0.00 0.00 0.00 2.52
1975 2132 8.251026 CCAGTCAAGTGATGTAGTATGTAAGAA 58.749 37.037 0.00 0.00 0.00 2.52
1976 2133 7.147897 CCCAGTCAAGTGATGTAGTATGTAAGA 60.148 40.741 0.00 0.00 0.00 2.10
1977 2134 6.980978 CCCAGTCAAGTGATGTAGTATGTAAG 59.019 42.308 0.00 0.00 0.00 2.34
1978 2135 6.666113 TCCCAGTCAAGTGATGTAGTATGTAA 59.334 38.462 0.00 0.00 0.00 2.41
1979 2136 6.096423 GTCCCAGTCAAGTGATGTAGTATGTA 59.904 42.308 0.00 0.00 0.00 2.29
1980 2137 5.023452 TCCCAGTCAAGTGATGTAGTATGT 58.977 41.667 0.00 0.00 0.00 2.29
1981 2138 5.127845 AGTCCCAGTCAAGTGATGTAGTATG 59.872 44.000 0.00 0.00 0.00 2.39
1982 2139 5.273208 AGTCCCAGTCAAGTGATGTAGTAT 58.727 41.667 0.00 0.00 0.00 2.12
1983 2140 4.673968 AGTCCCAGTCAAGTGATGTAGTA 58.326 43.478 0.00 0.00 0.00 1.82
1984 2141 3.511477 AGTCCCAGTCAAGTGATGTAGT 58.489 45.455 0.00 0.00 0.00 2.73
1985 2142 4.248859 CAAGTCCCAGTCAAGTGATGTAG 58.751 47.826 0.00 0.00 0.00 2.74
1986 2143 3.007940 CCAAGTCCCAGTCAAGTGATGTA 59.992 47.826 0.00 0.00 0.00 2.29
1987 2144 2.224621 CCAAGTCCCAGTCAAGTGATGT 60.225 50.000 0.00 0.00 0.00 3.06
1988 2145 2.224621 ACCAAGTCCCAGTCAAGTGATG 60.225 50.000 0.00 0.00 0.00 3.07
1989 2146 2.057922 ACCAAGTCCCAGTCAAGTGAT 58.942 47.619 0.00 0.00 0.00 3.06
1990 2147 1.507140 ACCAAGTCCCAGTCAAGTGA 58.493 50.000 0.00 0.00 0.00 3.41
1991 2148 2.348411 AACCAAGTCCCAGTCAAGTG 57.652 50.000 0.00 0.00 0.00 3.16
1992 2149 3.458487 ACTTAACCAAGTCCCAGTCAAGT 59.542 43.478 0.00 0.00 41.25 3.16
1993 2150 4.086706 ACTTAACCAAGTCCCAGTCAAG 57.913 45.455 0.00 0.00 41.25 3.02
2004 2161 4.083110 TCGGTCGACTAAGACTTAACCAAG 60.083 45.833 16.46 0.00 40.76 3.61
2005 2162 3.820467 TCGGTCGACTAAGACTTAACCAA 59.180 43.478 16.46 0.00 40.76 3.67
2006 2163 3.411446 TCGGTCGACTAAGACTTAACCA 58.589 45.455 16.46 0.70 40.76 3.67
2007 2164 3.181502 CCTCGGTCGACTAAGACTTAACC 60.182 52.174 16.46 4.35 40.76 2.85
2008 2165 3.730362 GCCTCGGTCGACTAAGACTTAAC 60.730 52.174 16.46 0.00 40.76 2.01
2009 2166 2.421424 GCCTCGGTCGACTAAGACTTAA 59.579 50.000 16.46 0.00 40.76 1.85
2010 2167 2.012673 GCCTCGGTCGACTAAGACTTA 58.987 52.381 16.46 0.00 40.76 2.24
2011 2168 0.810016 GCCTCGGTCGACTAAGACTT 59.190 55.000 16.46 0.00 40.76 3.01
2012 2169 1.031029 GGCCTCGGTCGACTAAGACT 61.031 60.000 16.46 0.00 40.76 3.24
2013 2170 1.031029 AGGCCTCGGTCGACTAAGAC 61.031 60.000 16.46 5.56 40.25 3.01
2014 2171 0.543277 TAGGCCTCGGTCGACTAAGA 59.457 55.000 9.68 11.53 0.00 2.10
2015 2172 0.945813 CTAGGCCTCGGTCGACTAAG 59.054 60.000 9.68 12.54 0.00 2.18
2016 2173 1.099879 GCTAGGCCTCGGTCGACTAA 61.100 60.000 9.68 2.81 0.00 2.24
2017 2174 1.525535 GCTAGGCCTCGGTCGACTA 60.526 63.158 9.68 3.17 0.00 2.59
2018 2175 2.829458 GCTAGGCCTCGGTCGACT 60.829 66.667 9.68 0.00 0.00 4.18
2019 2176 3.902086 GGCTAGGCCTCGGTCGAC 61.902 72.222 9.68 7.13 46.69 4.20
2029 2186 2.024414 CAAAATAGGGTGTGGCTAGGC 58.976 52.381 9.85 9.85 0.00 3.93
2030 2187 3.366052 ACAAAATAGGGTGTGGCTAGG 57.634 47.619 0.00 0.00 0.00 3.02
2031 2188 4.881850 CCTTACAAAATAGGGTGTGGCTAG 59.118 45.833 0.00 0.00 0.00 3.42
2032 2189 4.324719 CCCTTACAAAATAGGGTGTGGCTA 60.325 45.833 0.00 0.00 45.12 3.93
2033 2190 3.563479 CCCTTACAAAATAGGGTGTGGCT 60.563 47.826 0.00 0.00 45.12 4.75
2034 2191 2.758423 CCCTTACAAAATAGGGTGTGGC 59.242 50.000 0.00 0.00 45.12 5.01
2041 2198 8.269317 TGATTGTACTACCCCTTACAAAATAGG 58.731 37.037 0.00 0.00 40.62 2.57
2042 2199 9.847224 ATGATTGTACTACCCCTTACAAAATAG 57.153 33.333 0.00 0.00 40.62 1.73
2047 2204 9.436866 TGTATATGATTGTACTACCCCTTACAA 57.563 33.333 0.00 0.00 41.29 2.41
2048 2205 9.610104 ATGTATATGATTGTACTACCCCTTACA 57.390 33.333 0.00 0.00 0.00 2.41
2052 2209 9.213777 CCATATGTATATGATTGTACTACCCCT 57.786 37.037 12.31 0.00 42.05 4.79
2057 2214 8.704668 CCAGGCCATATGTATATGATTGTACTA 58.295 37.037 5.01 0.00 42.05 1.82
2066 2223 4.736126 TCGACCAGGCCATATGTATATG 57.264 45.455 5.01 5.14 39.80 1.78
2070 2227 4.021456 CAGTTATCGACCAGGCCATATGTA 60.021 45.833 5.01 0.00 0.00 2.29
2073 2230 2.972713 ACAGTTATCGACCAGGCCATAT 59.027 45.455 5.01 0.00 0.00 1.78
2076 2233 0.535335 GACAGTTATCGACCAGGCCA 59.465 55.000 5.01 0.00 0.00 5.36
2109 2266 3.181447 ACGGAGGGAGTAGTATCGATGAA 60.181 47.826 8.54 0.00 0.00 2.57
2134 2291 7.201617 CCTCCGTCCTAAAATATGTGTCTTTTC 60.202 40.741 0.00 0.00 0.00 2.29
2164 2321 8.530269 ACGGAGAAAGTACTAAAATTGTACTG 57.470 34.615 7.60 0.00 46.66 2.74
2172 2329 5.549742 TTGGGACGGAGAAAGTACTAAAA 57.450 39.130 0.00 0.00 0.00 1.52
2183 2340 7.449086 ACAACTTTATTTATTTTGGGACGGAGA 59.551 33.333 0.00 0.00 0.00 3.71
2186 2343 8.517056 AGTACAACTTTATTTATTTTGGGACGG 58.483 33.333 0.00 0.00 0.00 4.79
2237 2394 1.067495 ACTAGTCAAAGCTGCTCCGTC 60.067 52.381 1.00 0.00 0.00 4.79
2238 2395 0.969894 ACTAGTCAAAGCTGCTCCGT 59.030 50.000 1.00 0.00 0.00 4.69
2581 2768 7.372714 ACACTTACGTACATGTCAGTTGATAA 58.627 34.615 0.00 0.00 0.00 1.75
2675 2862 7.708998 AGCTAACGACCAATTGTCTTTAAAAA 58.291 30.769 4.43 0.00 42.13 1.94
2676 2863 7.266922 AGCTAACGACCAATTGTCTTTAAAA 57.733 32.000 4.43 0.00 42.13 1.52
2987 3196 3.906846 TGGCCTTCTCTCTCTCTCTTTTT 59.093 43.478 3.32 0.00 0.00 1.94
2988 3197 3.260632 GTGGCCTTCTCTCTCTCTCTTTT 59.739 47.826 3.32 0.00 0.00 2.27
2989 3198 2.831526 GTGGCCTTCTCTCTCTCTCTTT 59.168 50.000 3.32 0.00 0.00 2.52
2990 3199 2.225242 TGTGGCCTTCTCTCTCTCTCTT 60.225 50.000 3.32 0.00 0.00 2.85
2991 3200 1.357420 TGTGGCCTTCTCTCTCTCTCT 59.643 52.381 3.32 0.00 0.00 3.10
2992 3201 1.476488 GTGTGGCCTTCTCTCTCTCTC 59.524 57.143 3.32 0.00 0.00 3.20
2993 3202 1.555967 GTGTGGCCTTCTCTCTCTCT 58.444 55.000 3.32 0.00 0.00 3.10
2994 3203 0.534873 GGTGTGGCCTTCTCTCTCTC 59.465 60.000 3.32 0.00 0.00 3.20
2995 3204 1.254284 CGGTGTGGCCTTCTCTCTCT 61.254 60.000 3.32 0.00 34.25 3.10
2996 3205 1.216710 CGGTGTGGCCTTCTCTCTC 59.783 63.158 3.32 0.00 34.25 3.20
3079 3288 0.532640 TGTAGCCACTGTGCACTGTG 60.533 55.000 36.44 36.44 42.92 3.66
3080 3289 0.532862 GTGTAGCCACTGTGCACTGT 60.533 55.000 22.19 22.19 38.61 3.55
3081 3290 1.230635 GGTGTAGCCACTGTGCACTG 61.231 60.000 20.83 20.83 41.53 3.66
3082 3291 1.071471 GGTGTAGCCACTGTGCACT 59.929 57.895 19.41 10.29 41.53 4.40
3083 3292 2.317609 CGGTGTAGCCACTGTGCAC 61.318 63.158 10.75 10.75 42.07 4.57
3155 3364 2.186644 CCCATCGGTGCATCGTCA 59.813 61.111 20.53 0.09 0.00 4.35
3158 3367 2.961721 CGACCCATCGGTGCATCG 60.962 66.667 14.66 14.66 44.88 3.84
3202 3442 1.008538 GCACTCGCCAACAAACAGG 60.009 57.895 0.00 0.00 0.00 4.00
3282 3522 1.079543 CTCTGGTCTCTGGCCAACG 60.080 63.158 7.01 0.00 35.32 4.10
3294 3534 2.320681 TACCTACACTTGGCTCTGGT 57.679 50.000 0.00 0.00 0.00 4.00
3319 3559 0.101759 CCGTCCCTTTCGATCGCTAA 59.898 55.000 11.09 6.29 0.00 3.09
3352 3592 0.390603 ACGCACGCAATGGCTACTTA 60.391 50.000 0.00 0.00 38.10 2.24
3356 3596 2.817834 GGACGCACGCAATGGCTA 60.818 61.111 0.00 0.00 38.10 3.93
3358 3598 3.814268 ATGGACGCACGCAATGGC 61.814 61.111 0.00 0.00 0.00 4.40
3359 3599 2.100797 CATGGACGCACGCAATGG 59.899 61.111 0.00 0.00 0.00 3.16
3390 3635 4.094646 ACCATGCATCGACCGGCA 62.095 61.111 0.00 10.20 45.23 5.69
3412 3657 4.873810 CCATGAATGGCCGGCGGA 62.874 66.667 33.44 10.70 41.75 5.54
3638 4123 9.812347 TGGAAGTGCATTGATATAATTAATCCT 57.188 29.630 0.00 0.00 0.00 3.24
3648 4133 7.427989 AGGATTTTTGGAAGTGCATTGATAT 57.572 32.000 0.00 0.00 0.00 1.63
3774 4259 2.894902 TGCCATGCAAGCATATTGTTG 58.105 42.857 10.48 0.00 34.76 3.33
3775 4260 3.613494 TTGCCATGCAAGCATATTGTT 57.387 38.095 14.74 0.00 43.99 2.83
3991 4490 1.546961 AGGAACAGAGGGAGTACGTG 58.453 55.000 0.00 0.00 0.00 4.49
3999 4498 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
4000 4499 9.454859 AGAAAGACAAATATTTAGGAACAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
4031 4530 9.319143 GCTCTGTATGTAGTCACTTATTGAAAT 57.681 33.333 0.00 0.00 35.39 2.17
4032 4531 8.311109 TGCTCTGTATGTAGTCACTTATTGAAA 58.689 33.333 0.00 0.00 35.39 2.69
4033 4532 7.836842 TGCTCTGTATGTAGTCACTTATTGAA 58.163 34.615 0.00 0.00 35.39 2.69
4034 4533 7.404671 TGCTCTGTATGTAGTCACTTATTGA 57.595 36.000 0.00 0.00 0.00 2.57
4035 4534 8.479313 TTTGCTCTGTATGTAGTCACTTATTG 57.521 34.615 0.00 0.00 0.00 1.90
4036 4535 9.672673 ATTTTGCTCTGTATGTAGTCACTTATT 57.327 29.630 0.00 0.00 0.00 1.40
4037 4536 9.102757 CATTTTGCTCTGTATGTAGTCACTTAT 57.897 33.333 0.00 0.00 0.00 1.73
4038 4537 8.311109 TCATTTTGCTCTGTATGTAGTCACTTA 58.689 33.333 0.00 0.00 0.00 2.24
4039 4538 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
4040 4539 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
4041 4540 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
4042 4541 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
4043 4542 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
4044 4543 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
4045 4544 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
4046 4545 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
4047 4546 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
4048 4547 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
4049 4548 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
4050 4549 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
4051 4550 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
4052 4551 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
4053 4552 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
4054 4553 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4104 4603 8.856153 TCTAGGCATTTTAAATGTACTCAACA 57.144 30.769 17.51 3.21 43.86 3.33
4107 4606 9.733556 TCTTTCTAGGCATTTTAAATGTACTCA 57.266 29.630 17.51 6.00 0.00 3.41
4108 4607 9.989869 GTCTTTCTAGGCATTTTAAATGTACTC 57.010 33.333 17.51 6.87 0.00 2.59
4109 4608 9.515226 TGTCTTTCTAGGCATTTTAAATGTACT 57.485 29.630 17.51 16.92 29.10 2.73
4118 4617 9.573133 CGAAATAATTGTCTTTCTAGGCATTTT 57.427 29.630 0.00 0.00 35.56 1.82
4119 4618 8.190784 CCGAAATAATTGTCTTTCTAGGCATTT 58.809 33.333 0.00 0.00 35.56 2.32
4120 4619 7.556275 TCCGAAATAATTGTCTTTCTAGGCATT 59.444 33.333 0.00 0.00 35.56 3.56
4121 4620 7.054124 TCCGAAATAATTGTCTTTCTAGGCAT 58.946 34.615 0.00 0.00 35.56 4.40
4122 4621 6.411376 TCCGAAATAATTGTCTTTCTAGGCA 58.589 36.000 0.00 0.00 33.22 4.75
4123 4622 6.920569 TCCGAAATAATTGTCTTTCTAGGC 57.079 37.500 0.00 0.00 30.80 3.93
4124 4623 7.399523 CGTTCCGAAATAATTGTCTTTCTAGG 58.600 38.462 0.00 0.00 30.80 3.02
4125 4624 7.277098 TCCGTTCCGAAATAATTGTCTTTCTAG 59.723 37.037 0.00 0.00 30.80 2.43
4126 4625 7.098477 TCCGTTCCGAAATAATTGTCTTTCTA 58.902 34.615 0.00 0.00 30.80 2.10
4127 4626 5.935789 TCCGTTCCGAAATAATTGTCTTTCT 59.064 36.000 0.00 0.00 30.80 2.52
4128 4627 6.173191 TCCGTTCCGAAATAATTGTCTTTC 57.827 37.500 0.00 0.00 0.00 2.62
4129 4628 5.123344 CCTCCGTTCCGAAATAATTGTCTTT 59.877 40.000 0.00 0.00 0.00 2.52
4130 4629 4.634443 CCTCCGTTCCGAAATAATTGTCTT 59.366 41.667 0.00 0.00 0.00 3.01
4131 4630 4.189231 CCTCCGTTCCGAAATAATTGTCT 58.811 43.478 0.00 0.00 0.00 3.41
4132 4631 3.311596 CCCTCCGTTCCGAAATAATTGTC 59.688 47.826 0.00 0.00 0.00 3.18
4133 4632 3.054948 TCCCTCCGTTCCGAAATAATTGT 60.055 43.478 0.00 0.00 0.00 2.71
4134 4633 3.537580 TCCCTCCGTTCCGAAATAATTG 58.462 45.455 0.00 0.00 0.00 2.32
4135 4634 3.199289 ACTCCCTCCGTTCCGAAATAATT 59.801 43.478 0.00 0.00 0.00 1.40
4136 4635 2.770232 ACTCCCTCCGTTCCGAAATAAT 59.230 45.455 0.00 0.00 0.00 1.28
4137 4636 2.181975 ACTCCCTCCGTTCCGAAATAA 58.818 47.619 0.00 0.00 0.00 1.40
4138 4637 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4139 4638 1.479730 GTACTCCCTCCGTTCCGAAAT 59.520 52.381 0.00 0.00 0.00 2.17
4140 4639 0.890683 GTACTCCCTCCGTTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
4141 4640 0.967380 GGTACTCCCTCCGTTCCGAA 60.967 60.000 0.00 0.00 0.00 4.30
4142 4641 1.379044 GGTACTCCCTCCGTTCCGA 60.379 63.158 0.00 0.00 0.00 4.55
4143 4642 1.041447 ATGGTACTCCCTCCGTTCCG 61.041 60.000 0.00 0.00 0.00 4.30
4144 4643 0.751452 GATGGTACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 0.00 3.62
4145 4644 1.777941 AGATGGTACTCCCTCCGTTC 58.222 55.000 0.00 0.00 0.00 3.95
4146 4645 2.664015 GTAGATGGTACTCCCTCCGTT 58.336 52.381 0.00 0.00 0.00 4.44
4147 4646 1.133544 GGTAGATGGTACTCCCTCCGT 60.134 57.143 0.00 0.00 0.00 4.69
4148 4647 1.133575 TGGTAGATGGTACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63
4149 4648 2.769602 TGGTAGATGGTACTCCCTCC 57.230 55.000 0.00 0.00 0.00 4.30
4150 4649 3.388350 CCTTTGGTAGATGGTACTCCCTC 59.612 52.174 0.00 0.00 0.00 4.30
4151 4650 3.013648 TCCTTTGGTAGATGGTACTCCCT 59.986 47.826 0.00 0.00 0.00 4.20
4152 4651 3.381335 TCCTTTGGTAGATGGTACTCCC 58.619 50.000 0.00 0.00 0.00 4.30
4153 4652 3.388350 CCTCCTTTGGTAGATGGTACTCC 59.612 52.174 0.00 0.00 0.00 3.85
4154 4653 3.181464 GCCTCCTTTGGTAGATGGTACTC 60.181 52.174 0.00 0.00 0.00 2.59
4155 4654 2.772515 GCCTCCTTTGGTAGATGGTACT 59.227 50.000 0.00 0.00 0.00 2.73
4156 4655 2.483188 CGCCTCCTTTGGTAGATGGTAC 60.483 54.545 0.00 0.00 0.00 3.34
4157 4656 1.760613 CGCCTCCTTTGGTAGATGGTA 59.239 52.381 0.00 0.00 0.00 3.25
4158 4657 0.541863 CGCCTCCTTTGGTAGATGGT 59.458 55.000 0.00 0.00 0.00 3.55
4159 4658 0.830648 TCGCCTCCTTTGGTAGATGG 59.169 55.000 0.00 0.00 0.00 3.51
4160 4659 1.757118 TCTCGCCTCCTTTGGTAGATG 59.243 52.381 0.00 0.00 0.00 2.90
4161 4660 2.160721 TCTCGCCTCCTTTGGTAGAT 57.839 50.000 0.00 0.00 0.00 1.98
4162 4661 1.757118 CATCTCGCCTCCTTTGGTAGA 59.243 52.381 0.00 0.00 0.00 2.59
4163 4662 1.808133 GCATCTCGCCTCCTTTGGTAG 60.808 57.143 0.00 0.00 32.94 3.18
4164 4663 0.178068 GCATCTCGCCTCCTTTGGTA 59.822 55.000 0.00 0.00 32.94 3.25
4217 4716 2.353323 AGTGCATCACATGTAGCTGTG 58.647 47.619 15.36 0.00 46.34 3.66
4248 4747 4.141937 CCACTAAGGCATGCACTAACTAGA 60.142 45.833 21.36 0.00 0.00 2.43
4388 4887 2.224066 ACTGTACGCCATAGATGAAGCC 60.224 50.000 0.00 0.00 0.00 4.35
4445 4944 4.856664 ACTACGTCGCTACATCAATTAGG 58.143 43.478 0.00 0.00 0.00 2.69
4502 5001 6.714810 GTGGTGCAATCTATTATATGGTCCAA 59.285 38.462 0.00 0.00 0.00 3.53
4559 5058 1.909700 TGCATGGGTCCACTCTTTTC 58.090 50.000 0.00 0.00 0.00 2.29
4683 5182 1.765314 CCACCAATCCCCAAAACAACA 59.235 47.619 0.00 0.00 0.00 3.33
4727 5226 4.523168 TTAGACTCTCTCCCTCCTAACC 57.477 50.000 0.00 0.00 0.00 2.85
4748 5257 1.064685 CAACCGCTTCTTTCCCCCTAT 60.065 52.381 0.00 0.00 0.00 2.57
4790 5299 2.447047 ACTCTTGTTCATGGGGAGGTTT 59.553 45.455 0.00 0.00 0.00 3.27
4791 5300 2.065799 ACTCTTGTTCATGGGGAGGTT 58.934 47.619 0.00 0.00 0.00 3.50
4860 5369 4.625311 CCAAACACCAAAAGTCTGACAAAC 59.375 41.667 10.88 0.00 0.00 2.93
4884 5394 0.514255 CACAACGGAGATGCACACAG 59.486 55.000 0.00 0.00 31.73 3.66
4898 5408 4.643387 ACCCGGCCTCTGCACAAC 62.643 66.667 0.00 0.00 40.13 3.32
4901 5411 3.248446 TAACACCCGGCCTCTGCAC 62.248 63.158 0.00 0.00 40.13 4.57
4904 5414 1.218316 GAGTAACACCCGGCCTCTG 59.782 63.158 0.00 0.00 0.00 3.35
4908 5418 2.125793 GACGAGTAACACCCGGCC 60.126 66.667 0.00 0.00 0.00 6.13
4909 5419 1.082117 CATGACGAGTAACACCCGGC 61.082 60.000 0.00 0.00 0.00 6.13
4923 5433 5.496387 CATCGAGCAGATACAAAACATGAC 58.504 41.667 0.00 0.00 37.52 3.06
4942 5452 8.947940 GCTTTTATTAACTCAAATGTAGCATCG 58.052 33.333 0.00 0.00 0.00 3.84
5086 5597 8.475639 ACTAGTTCAAATCTATACGTGGTTGAT 58.524 33.333 0.00 0.00 0.00 2.57
5088 5599 8.475331 AACTAGTTCAAATCTATACGTGGTTG 57.525 34.615 1.12 0.00 0.00 3.77
5244 5755 3.735237 AGTGATGTCAGTTCTTCGTGT 57.265 42.857 0.00 0.00 0.00 4.49
5247 5758 7.030165 ACAGTATAAGTGATGTCAGTTCTTCG 58.970 38.462 6.37 0.00 39.89 3.79
5330 5841 8.344831 TCACTCAAGTTCAAATATGTGAAACTG 58.655 33.333 9.98 10.12 39.18 3.16
5335 5846 9.065798 TGATTTCACTCAAGTTCAAATATGTGA 57.934 29.630 0.00 0.00 0.00 3.58
5435 5949 6.543465 TCAAAAAGAGCAGATTTCAGTCTTCA 59.457 34.615 0.00 0.00 0.00 3.02
5471 5985 9.311916 CTAATTTCACTCATTTCAAACACCAAA 57.688 29.630 0.00 0.00 0.00 3.28
5535 6049 6.863126 CAGATTCACACATTAAAACCCACTTC 59.137 38.462 0.00 0.00 0.00 3.01
5690 6205 9.639601 GGGTTCTAAAAATAAGTGAAATTGGAG 57.360 33.333 0.00 0.00 0.00 3.86
5691 6206 9.148879 TGGGTTCTAAAAATAAGTGAAATTGGA 57.851 29.630 0.00 0.00 0.00 3.53
5692 6207 9.203421 GTGGGTTCTAAAAATAAGTGAAATTGG 57.797 33.333 0.00 0.00 0.00 3.16
5693 6208 9.203421 GGTGGGTTCTAAAAATAAGTGAAATTG 57.797 33.333 0.00 0.00 0.00 2.32
5694 6209 8.372459 GGGTGGGTTCTAAAAATAAGTGAAATT 58.628 33.333 0.00 0.00 0.00 1.82
5695 6210 7.511028 TGGGTGGGTTCTAAAAATAAGTGAAAT 59.489 33.333 0.00 0.00 0.00 2.17
5696 6211 6.839657 TGGGTGGGTTCTAAAAATAAGTGAAA 59.160 34.615 0.00 0.00 0.00 2.69
5697 6212 6.374588 TGGGTGGGTTCTAAAAATAAGTGAA 58.625 36.000 0.00 0.00 0.00 3.18
5698 6213 5.954757 TGGGTGGGTTCTAAAAATAAGTGA 58.045 37.500 0.00 0.00 0.00 3.41
5699 6214 6.850752 ATGGGTGGGTTCTAAAAATAAGTG 57.149 37.500 0.00 0.00 0.00 3.16
5700 6215 7.511028 TGAAATGGGTGGGTTCTAAAAATAAGT 59.489 33.333 0.00 0.00 0.00 2.24
5701 6216 7.902087 TGAAATGGGTGGGTTCTAAAAATAAG 58.098 34.615 0.00 0.00 0.00 1.73
5702 6217 7.857404 TGAAATGGGTGGGTTCTAAAAATAA 57.143 32.000 0.00 0.00 0.00 1.40
5703 6218 7.857404 TTGAAATGGGTGGGTTCTAAAAATA 57.143 32.000 0.00 0.00 0.00 1.40
5704 6219 6.755542 TTGAAATGGGTGGGTTCTAAAAAT 57.244 33.333 0.00 0.00 0.00 1.82
5705 6220 6.327626 TCATTGAAATGGGTGGGTTCTAAAAA 59.672 34.615 3.31 0.00 37.03 1.94
5706 6221 5.841237 TCATTGAAATGGGTGGGTTCTAAAA 59.159 36.000 3.31 0.00 37.03 1.52
5897 6436 8.681806 TGCCGATGATTGTGAGAATTAATTTAA 58.318 29.630 1.43 0.00 0.00 1.52
5898 6437 8.128582 GTGCCGATGATTGTGAGAATTAATTTA 58.871 33.333 1.43 0.00 0.00 1.40
5916 6458 1.424403 TTTAGTGTGTCGTGCCGATG 58.576 50.000 0.67 0.00 38.42 3.84
5945 6487 8.032952 TCACTCAATCTATTTCAATGTGTGAC 57.967 34.615 0.00 0.00 38.70 3.67
6024 6569 4.868171 GTCAAAACCTTTTCAACAAGACCC 59.132 41.667 0.00 0.00 0.00 4.46
6177 6762 2.301296 CCACACACACCTCATCTCTTCT 59.699 50.000 0.00 0.00 0.00 2.85
6198 6783 7.553334 TGATTATATCAAATCTACGTAGGCCC 58.447 38.462 22.01 0.00 36.90 5.80
6288 11535 4.954875 TGGTGAAAAATCAACCAACCATC 58.045 39.130 0.00 0.00 0.00 3.51
6341 11589 3.611057 CGTAGTTTGACTCTAGCCAACGT 60.611 47.826 0.00 0.00 0.00 3.99
6421 11669 4.519350 TGCGAGGAGGTGTTCTATATAGTG 59.481 45.833 9.58 0.00 0.00 2.74
6581 11830 7.186804 AGTGAAACATTCTACAAAGTTTGTCG 58.813 34.615 24.06 18.02 41.24 4.35
6625 11874 4.096984 GGACTTCCATGAATGTCATTCCAC 59.903 45.833 20.41 0.00 34.28 4.02
6628 11877 5.065731 GTCTGGACTTCCATGAATGTCATTC 59.934 44.000 17.21 17.21 46.46 2.67
6717 11967 9.077885 TGACAGAAAAGCAATCCTACTTAAAAT 57.922 29.630 0.00 0.00 0.00 1.82
6738 11988 4.790766 GCTGTGTGGAAAGTTTCATGACAG 60.791 45.833 23.11 23.11 35.37 3.51
6826 12076 7.062371 CCGTGAACAGTGAAATGTAAACAAAAA 59.938 33.333 0.00 0.00 31.70 1.94
6827 12077 6.528423 CCGTGAACAGTGAAATGTAAACAAAA 59.472 34.615 0.00 0.00 31.70 2.44
6828 12078 6.030849 CCGTGAACAGTGAAATGTAAACAAA 58.969 36.000 0.00 0.00 31.70 2.83
6829 12079 5.354513 TCCGTGAACAGTGAAATGTAAACAA 59.645 36.000 0.00 0.00 31.70 2.83
6830 12080 4.876679 TCCGTGAACAGTGAAATGTAAACA 59.123 37.500 0.00 0.00 31.70 2.83
6831 12081 5.235616 TCTCCGTGAACAGTGAAATGTAAAC 59.764 40.000 0.00 0.00 31.70 2.01
6863 12113 8.232913 AGAGTTTTGCCACTAAAAATTAGACA 57.767 30.769 4.24 0.00 31.92 3.41
7299 12551 2.765699 GCAGTTTCTCCTGATCTCTCCT 59.234 50.000 0.00 0.00 34.23 3.69
7346 12598 8.860128 CAGCGTATATGTAGTTATGTACCAATG 58.140 37.037 0.00 0.00 0.00 2.82
7453 12724 2.121992 GAGGATGCCGGCCTGATCAT 62.122 60.000 26.77 18.35 35.44 2.45
7454 12725 2.769621 AGGATGCCGGCCTGATCA 60.770 61.111 26.77 3.54 33.59 2.92
7455 12726 2.031768 GAGGATGCCGGCCTGATC 59.968 66.667 26.77 20.07 35.44 2.92
7456 12727 1.925285 TTTGAGGATGCCGGCCTGAT 61.925 55.000 26.77 11.41 35.44 2.90
7457 12728 2.135903 TTTTGAGGATGCCGGCCTGA 62.136 55.000 26.77 5.45 35.44 3.86
7458 12729 1.250154 TTTTTGAGGATGCCGGCCTG 61.250 55.000 26.77 0.00 35.44 4.85
7459 12730 1.076549 TTTTTGAGGATGCCGGCCT 59.923 52.632 26.77 15.82 38.81 5.19
7460 12731 3.693411 TTTTTGAGGATGCCGGCC 58.307 55.556 26.77 9.46 0.00 6.13
7479 12750 3.365472 AGCCGGCCTGATTATTCTTTTT 58.635 40.909 26.15 0.00 0.00 1.94
7480 12751 3.018423 AGCCGGCCTGATTATTCTTTT 57.982 42.857 26.15 0.00 0.00 2.27
7481 12752 2.736670 AGCCGGCCTGATTATTCTTT 57.263 45.000 26.15 0.00 0.00 2.52
7482 12753 4.074970 CAATAGCCGGCCTGATTATTCTT 58.925 43.478 26.15 1.43 0.00 2.52
7483 12754 3.073062 ACAATAGCCGGCCTGATTATTCT 59.927 43.478 26.15 5.03 0.00 2.40
7484 12755 3.412386 ACAATAGCCGGCCTGATTATTC 58.588 45.455 26.15 0.00 0.00 1.75
7485 12756 3.412386 GACAATAGCCGGCCTGATTATT 58.588 45.455 26.15 17.18 0.00 1.40
7592 12866 9.140874 AGGAAAATCTCATTTCTCTTTTCAACT 57.859 29.630 7.96 0.00 38.92 3.16
7680 12954 9.856488 GGAGCGTTCATTAGATACAATATAAGA 57.144 33.333 0.53 0.00 0.00 2.10
7681 12955 8.799091 CGGAGCGTTCATTAGATACAATATAAG 58.201 37.037 0.53 0.00 0.00 1.73
7683 12957 7.255569 CCGGAGCGTTCATTAGATACAATATA 58.744 38.462 0.00 0.00 0.00 0.86
7684 12958 6.100004 CCGGAGCGTTCATTAGATACAATAT 58.900 40.000 0.00 0.00 0.00 1.28
7687 12961 3.713288 CCGGAGCGTTCATTAGATACAA 58.287 45.455 0.00 0.00 0.00 2.41
7688 12962 2.545113 GCCGGAGCGTTCATTAGATACA 60.545 50.000 5.05 0.00 0.00 2.29
7701 12975 2.588877 AATCGAATGGCCGGAGCG 60.589 61.111 5.05 0.00 41.24 5.03
7813 16390 1.765904 TGCTCGGTGGCCTGAATATAA 59.234 47.619 3.32 0.00 0.00 0.98
7838 16415 2.881513 TGGTTCGCTTCAATGCTTGTAA 59.118 40.909 0.00 0.00 0.00 2.41
7856 16433 1.346395 TGACGGTAGTGCATCTTTGGT 59.654 47.619 0.00 0.00 0.00 3.67
7864 16441 2.183300 GGCGATGACGGTAGTGCA 59.817 61.111 0.00 0.00 40.15 4.57
7865 16442 2.585247 GGGCGATGACGGTAGTGC 60.585 66.667 0.00 0.00 40.15 4.40
7891 16468 2.993937 ACAAGGTTTGTTCAACTCCGA 58.006 42.857 0.00 0.00 42.22 4.55
7931 18118 2.898705 ACGAGGTCTTAGTACGACGAT 58.101 47.619 0.00 0.00 32.24 3.73
7945 18132 1.228769 TGTGCTGGTCCTACGAGGT 60.229 57.895 0.00 0.00 36.53 3.85
7948 18135 2.632544 CGGTGTGCTGGTCCTACGA 61.633 63.158 0.00 0.00 0.00 3.43
7961 18148 2.616842 GAGACAATTGTTGTTCCGGTGT 59.383 45.455 13.36 0.00 45.52 4.16
7966 18153 3.751175 TCATCGGAGACAATTGTTGTTCC 59.249 43.478 13.36 17.49 45.52 3.62
7976 18163 2.432146 CCCTTCTCATCATCGGAGACAA 59.568 50.000 0.00 0.00 42.51 3.18
7977 18164 2.034878 CCCTTCTCATCATCGGAGACA 58.965 52.381 0.00 0.00 42.51 3.41
7989 18176 3.181329 TGCTTCCAATCTACCCTTCTCA 58.819 45.455 0.00 0.00 0.00 3.27
8032 18219 4.937620 GGATCTTGTCTTAGTTCATGTGCA 59.062 41.667 0.00 0.00 0.00 4.57
8038 18225 5.306937 TCCACTTGGATCTTGTCTTAGTTCA 59.693 40.000 0.00 0.00 39.78 3.18
8084 18271 4.587189 GGATCTCGCGGGGTTCGG 62.587 72.222 5.94 0.00 39.69 4.30
8089 18276 4.271816 CTGACGGATCTCGCGGGG 62.272 72.222 5.94 0.00 43.89 5.73
8105 18292 2.427453 AGACGTGTGAAGTTGTGTCTCT 59.573 45.455 0.00 0.00 31.43 3.10
8155 18342 5.132043 AGGTTCTTCTAGCCTAGCTCTTA 57.868 43.478 0.00 0.00 36.97 2.10
8188 18375 0.251916 CAAGGCGGTATGTTCCCTGA 59.748 55.000 0.00 0.00 0.00 3.86
8211 18398 7.057894 AGTTACAGTTTGTGTCCTATTTTGGA 58.942 34.615 0.00 0.00 40.94 3.53
8215 18402 9.623000 AGTTTAGTTACAGTTTGTGTCCTATTT 57.377 29.630 0.00 0.00 40.94 1.40
8217 18404 7.597743 CGAGTTTAGTTACAGTTTGTGTCCTAT 59.402 37.037 0.00 0.00 40.94 2.57
8246 18433 3.547054 TCTCCGTGTGTAGGTGTTTTT 57.453 42.857 0.00 0.00 0.00 1.94
8283 18470 4.796495 GGTGTGATGGGTCCCGGC 62.796 72.222 2.65 0.00 0.00 6.13
8296 18483 0.625849 CTTTAGGGCCATGGAGGTGT 59.374 55.000 18.40 0.00 40.61 4.16
8298 18485 1.681229 TTCTTTAGGGCCATGGAGGT 58.319 50.000 18.40 0.00 40.61 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.