AutoCloner

Multiple sequence alignment - TraesCS5B01G103200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G103200	chr5B	100.000	2466	0	0	1	2466	137416931	137419396	0.000000e+00	4554
1	TraesCS5B01G103200	chr5B	92.857	812	35	9	20	812	523906837	523906030	0.000000e+00	1157
2	TraesCS5B01G103200	chr5B	88.699	584	45	9	1537	2100	137643862	137644444	0.000000e+00	693
3	TraesCS5B01G103200	chr5B	84.048	583	69	13	1540	2100	289600973	289600393	7.760000e-150	540
4	TraesCS5B01G103200	chr6B	92.460	809	40	9	22	811	526739837	526740643	0.000000e+00	1136
5	TraesCS5B01G103200	chr6B	92.164	804	41	9	22	805	691347071	691347872	0.000000e+00	1116
6	TraesCS5B01G103200	chr6B	92.201	718	39	7	112	812	131887228	131886511	0.000000e+00	1000
7	TraesCS5B01G103200	chr6B	84.437	951	121	14	1538	2466	182140716	182139771	0.000000e+00	911
8	TraesCS5B01G103200	chr6B	89.124	331	17	7	503	815	703364639	703364968	6.390000e-106	394
9	TraesCS5B01G103200	chrUn	92.164	804	42	12	22	805	197211791	197210989	0.000000e+00	1116
10	TraesCS5B01G103200	chrUn	84.874	952	121	8	1538	2466	1999997	2000948	0.000000e+00	939
11	TraesCS5B01G103200	chr3B	91.832	808	43	9	23	813	724045364	724044563	0.000000e+00	1105
12	TraesCS5B01G103200	chr3B	91.108	821	48	10	22	819	760400435	760401253	0.000000e+00	1088
13	TraesCS5B01G103200	chr3B	89.681	814	58	15	21	823	10103550	10102752	0.000000e+00	1014
14	TraesCS5B01G103200	chr5A	93.122	756	32	7	22	759	678212422	678211669	0.000000e+00	1090
15	TraesCS5B01G103200	chr5A	91.812	745	59	2	794	1537	139071233	139071976	0.000000e+00	1037
16	TraesCS5B01G103200	chr5D	91.532	803	49	13	21	806	91874518	91873718	0.000000e+00	1088
17	TraesCS5B01G103200	chr5D	92.380	748	52	3	794	1537	124842091	124842837	0.000000e+00	1061
18	TraesCS5B01G103200	chr4A	90.727	798	50	16	21	803	742066757	742065969	0.000000e+00	1042
19	TraesCS5B01G103200	chr1B	90.805	783	55	9	32	805	137653774	137653000	0.000000e+00	1031
20	TraesCS5B01G103200	chr1B	83.351	931	125	17	1551	2454	367067685	367068612	0.000000e+00	833
21	TraesCS5B01G103200	chr1B	79.638	938	154	23	1537	2443	228200902	228201833	7.440000e-180	640
22	TraesCS5B01G103200	chr4B	89.938	805	39	13	22	808	273247559	273248339	0.000000e+00	1000
23	TraesCS5B01G103200	chr4B	82.777	929	130	15	1538	2440	453364498	453363574	0.000000e+00	802
24	TraesCS5B01G103200	chr4B	81.263	950	155	9	1538	2466	213486657	213485710	0.000000e+00	747
25	TraesCS5B01G103200	chr4B	84.456	579	65	13	1540	2094	453263739	453263162	4.640000e-152	547
26	TraesCS5B01G103200	chr1D	81.548	943	141	22	1533	2449	387054614	387053679	0.000000e+00	747
27	TraesCS5B01G103200	chr2D	79.424	938	157	27	1538	2449	369051624	369050697	4.480000e-177	630
28	TraesCS5B01G103200	chr7D	78.683	957	164	29	1538	2465	274376694	274377639	3.510000e-168	601
29	TraesCS5B01G103200	chr7D	82.253	586	77	19	1538	2100	460818552	460817971	4.770000e-132	481
30	TraesCS5B01G103200	chr7D	82.069	580	77	16	1537	2094	181596340	181596914	1.030000e-128	470
31	TraesCS5B01G103200	chr2A	78.370	920	174	23	1538	2443	501853602	501854510	7.650000e-160	573

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G103200	chr5B	137416931	137419396	2465	False	4554	4554	100.000	1	2466	1	chr5B.!!$F1	2465
1	TraesCS5B01G103200	chr5B	523906030	523906837	807	True	1157	1157	92.857	20	812	1	chr5B.!!$R2	792
2	TraesCS5B01G103200	chr5B	137643862	137644444	582	False	693	693	88.699	1537	2100	1	chr5B.!!$F2	563
3	TraesCS5B01G103200	chr5B	289600393	289600973	580	True	540	540	84.048	1540	2100	1	chr5B.!!$R1	560
4	TraesCS5B01G103200	chr6B	526739837	526740643	806	False	1136	1136	92.460	22	811	1	chr6B.!!$F1	789
5	TraesCS5B01G103200	chr6B	691347071	691347872	801	False	1116	1116	92.164	22	805	1	chr6B.!!$F2	783
6	TraesCS5B01G103200	chr6B	131886511	131887228	717	True	1000	1000	92.201	112	812	1	chr6B.!!$R1	700
7	TraesCS5B01G103200	chr6B	182139771	182140716	945	True	911	911	84.437	1538	2466	1	chr6B.!!$R2	928
8	TraesCS5B01G103200	chrUn	197210989	197211791	802	True	1116	1116	92.164	22	805	1	chrUn.!!$R1	783
9	TraesCS5B01G103200	chrUn	1999997	2000948	951	False	939	939	84.874	1538	2466	1	chrUn.!!$F1	928
10	TraesCS5B01G103200	chr3B	724044563	724045364	801	True	1105	1105	91.832	23	813	1	chr3B.!!$R2	790
11	TraesCS5B01G103200	chr3B	760400435	760401253	818	False	1088	1088	91.108	22	819	1	chr3B.!!$F1	797
12	TraesCS5B01G103200	chr3B	10102752	10103550	798	True	1014	1014	89.681	21	823	1	chr3B.!!$R1	802
13	TraesCS5B01G103200	chr5A	678211669	678212422	753	True	1090	1090	93.122	22	759	1	chr5A.!!$R1	737
14	TraesCS5B01G103200	chr5A	139071233	139071976	743	False	1037	1037	91.812	794	1537	1	chr5A.!!$F1	743
15	TraesCS5B01G103200	chr5D	91873718	91874518	800	True	1088	1088	91.532	21	806	1	chr5D.!!$R1	785
16	TraesCS5B01G103200	chr5D	124842091	124842837	746	False	1061	1061	92.380	794	1537	1	chr5D.!!$F1	743
17	TraesCS5B01G103200	chr4A	742065969	742066757	788	True	1042	1042	90.727	21	803	1	chr4A.!!$R1	782
18	TraesCS5B01G103200	chr1B	137653000	137653774	774	True	1031	1031	90.805	32	805	1	chr1B.!!$R1	773
19	TraesCS5B01G103200	chr1B	367067685	367068612	927	False	833	833	83.351	1551	2454	1	chr1B.!!$F2	903
20	TraesCS5B01G103200	chr1B	228200902	228201833	931	False	640	640	79.638	1537	2443	1	chr1B.!!$F1	906
21	TraesCS5B01G103200	chr4B	273247559	273248339	780	False	1000	1000	89.938	22	808	1	chr4B.!!$F1	786
22	TraesCS5B01G103200	chr4B	453363574	453364498	924	True	802	802	82.777	1538	2440	1	chr4B.!!$R3	902
23	TraesCS5B01G103200	chr4B	213485710	213486657	947	True	747	747	81.263	1538	2466	1	chr4B.!!$R1	928
24	TraesCS5B01G103200	chr4B	453263162	453263739	577	True	547	547	84.456	1540	2094	1	chr4B.!!$R2	554
25	TraesCS5B01G103200	chr1D	387053679	387054614	935	True	747	747	81.548	1533	2449	1	chr1D.!!$R1	916
26	TraesCS5B01G103200	chr2D	369050697	369051624	927	True	630	630	79.424	1538	2449	1	chr2D.!!$R1	911
27	TraesCS5B01G103200	chr7D	274376694	274377639	945	False	601	601	78.683	1538	2465	1	chr7D.!!$F2	927
28	TraesCS5B01G103200	chr7D	460817971	460818552	581	True	481	481	82.253	1538	2100	1	chr7D.!!$R1	562
29	TraesCS5B01G103200	chr7D	181596340	181596914	574	False	470	470	82.069	1537	2094	1	chr7D.!!$F1	557
30	TraesCS5B01G103200	chr2A	501853602	501854510	908	False	573	573	78.370	1538	2443	1	chr2A.!!$F1	905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
943	991	0.178967	TTCCTGCCTGCCACATTTGA	60.179	50.0	0.0	0.0	0.0	2.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2222	2310	0.66178	GAATCGATCGAGGCGACTGG	60.662	60.0	23.84	0.0	44.43	4.0	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	4.905240	ACACTGCAGTTGCCATGA	57.095	50.000	18.94	0.00	41.18	3.07
18	19	3.351609	ACACTGCAGTTGCCATGAT	57.648	47.368	18.94	0.00	41.18	2.45
45	46	2.134287	ATATCGCCCACACGCCTCT	61.134	57.895	0.00	0.00	0.00	3.69
46	47	2.369257	ATATCGCCCACACGCCTCTG	62.369	60.000	0.00	0.00	0.00	3.35
51	52	2.737180	CCACACGCCTCTGTCACT	59.263	61.111	0.00	0.00	0.00	3.41
195	196	4.918583	GTCTCGACGAGATCTTCAAAACTT	59.081	41.667	28.81	0.00	40.98	2.66
226	236	7.484641	CCATGTTGATATGTTTCGACGAATTTT	59.515	33.333	11.71	1.80	33.42	1.82
248	260	0.469705	TTGCCCAGAAGTTGCCATGT	60.470	50.000	0.00	0.00	0.00	3.21
280	292	7.855545	CACTATAGTTGCCATAGTGCTTAAAG	58.144	38.462	1.56	0.00	45.21	1.85
528	552	6.883756	TGAAACATATCATGGCAACTTCAGTA	59.116	34.615	0.00	0.00	37.61	2.74
577	604	9.243637	GCAATAGACATGACAACTTTTAACAAA	57.756	29.630	0.00	0.00	0.00	2.83
798	846	0.796312	CACACGTGTGGCAGTTATCC	59.204	55.000	35.65	0.00	42.10	2.59
814	862	8.418662	GGCAGTTATCCACGTCCATATTATATA	58.581	37.037	0.00	0.00	0.00	0.86
923	971	6.126768	ACCTCTTGCTATTTATAGACTTGCCA	60.127	38.462	0.97	0.00	32.05	4.92
925	973	7.446625	CCTCTTGCTATTTATAGACTTGCCATT	59.553	37.037	0.97	0.00	32.05	3.16
943	991	0.178967	TTCCTGCCTGCCACATTTGA	60.179	50.000	0.00	0.00	0.00	2.69
954	1002	4.713553	TGCCACATTTGAAGTCTTACTGA	58.286	39.130	0.00	0.00	0.00	3.41
987	1035	2.917971	CGACTAGAGCCGAGTTTTTCAG	59.082	50.000	0.00	0.00	0.00	3.02
994	1042	3.863041	AGCCGAGTTTTTCAGGAGATAC	58.137	45.455	0.00	0.00	0.00	2.24
995	1043	3.515901	AGCCGAGTTTTTCAGGAGATACT	59.484	43.478	0.00	0.00	0.00	2.12
1076	1124	1.205657	GTGTGTGTCCAGTGTACGTG	58.794	55.000	0.00	0.00	0.00	4.49
1085	1133	4.181578	GTCCAGTGTACGTGCATATCTTT	58.818	43.478	10.21	0.00	0.00	2.52
1144	1192	9.632969	CGATTTTCCGAAAAGTACTTACATATG	57.367	33.333	8.92	0.00	33.22	1.78
1148	1196	4.269123	CCGAAAAGTACTTACATATGCGCA	59.731	41.667	14.96	14.96	0.00	6.09
1153	1201	3.494626	AGTACTTACATATGCGCATGTGC	59.505	43.478	37.28	25.51	39.46	4.57
1203	1251	4.946478	ATCTAGGTGGTCTTGATGCTAC	57.054	45.455	0.00	0.00	36.77	3.58
1209	1257	3.437049	GGTGGTCTTGATGCTACTGAAAC	59.563	47.826	0.00	0.00	0.00	2.78
1213	1261	3.123621	GTCTTGATGCTACTGAAACGGTG	59.876	47.826	0.00	0.00	0.00	4.94
1233	1281	0.387239	GTCAAACAAGATGGCCGTGC	60.387	55.000	0.00	0.00	0.00	5.34
1271	1319	1.060713	CGCTACCGTTGTCAACTCAG	58.939	55.000	13.67	8.49	0.00	3.35
1315	1363	7.318141	AGATAACTGTCAAATTTTGCATCCAG	58.682	34.615	4.19	9.39	0.00	3.86
1316	1364	3.656559	ACTGTCAAATTTTGCATCCAGC	58.343	40.909	4.19	0.00	45.96	4.85
1435	1483	3.246112	TGCCCTACGTGCAACCCT	61.246	61.111	0.00	0.00	35.40	4.34
1450	1498	0.849094	ACCCTAAATGCCCACCTCCA	60.849	55.000	0.00	0.00	0.00	3.86
1462	1510	0.106167	CACCTCCATCGGGGTCTCTA	60.106	60.000	0.00	0.00	38.11	2.43
1463	1511	0.861155	ACCTCCATCGGGGTCTCTAT	59.139	55.000	0.00	0.00	38.11	1.98
1496	1544	3.057315	CAGGCTCGAACAAATTGTCCATT	60.057	43.478	0.00	0.00	0.00	3.16
1547	1598	1.194781	AACTGGCTCTGTCGTGGGAT	61.195	55.000	0.00	0.00	0.00	3.85
1572	1623	7.075797	TCAGATTTGACAATAGAGATAGGGGA	58.924	38.462	0.00	0.00	0.00	4.81
1596	1649	3.153919	CATAGGAGAGGCAGAGTCCTAC	58.846	54.545	5.72	0.00	44.07	3.18
1711	1772	2.225779	TGGAGGATGAAGTTACAGGGGA	60.226	50.000	0.00	0.00	0.00	4.81
1742	1804	0.618968	CTGCAAGAGGGGAGGGTAGT	60.619	60.000	0.00	0.00	34.07	2.73
1832	1896	3.241868	CGTATGTTACTGGTAACGCTTGC	60.242	47.826	15.80	8.27	46.19	4.01
1842	1906	2.511879	GTAACGCTTGCGTTTAATGGG	58.488	47.619	32.64	0.00	33.80	4.00
1905	1969	1.351350	GGTGACCTTAGGCCTTCTGTT	59.649	52.381	12.58	0.00	0.00	3.16
1968	2055	2.872858	CGAGTGGATCATCTGTCGAGTA	59.127	50.000	0.00	0.00	0.00	2.59
1976	2063	4.718940	TCATCTGTCGAGTAGATTGCAA	57.281	40.909	0.00	0.00	32.75	4.08
1991	2078	5.828747	AGATTGCAATTCATGAGGATTTCG	58.171	37.500	14.33	0.00	0.00	3.46
2021	2108	5.917541	TCTTCTGTTTAACTTTGTAGGCG	57.082	39.130	0.00	0.00	0.00	5.52
2039	2126	1.404181	GCGTCAGCCTCTTGTGTGATA	60.404	52.381	0.00	0.00	37.42	2.15
2142	2229	3.753797	GGATTGAGTGAAGAAGGGTTGAC	59.246	47.826	0.00	0.00	0.00	3.18
2147	2234	1.602377	GTGAAGAAGGGTTGACGTTGG	59.398	52.381	0.00	0.00	0.00	3.77
2170	2257	0.616395	TGGCCCGACTGAATGTCCTA	60.616	55.000	0.00	0.00	42.49	2.94
2245	2333	1.101635	TCGCCTCGATCGATTCTGGT	61.102	55.000	19.78	0.00	0.00	4.00
2295	2384	3.376546	GCATGGTTCTGAGAAGATTGGAC	59.623	47.826	0.00	0.00	0.00	4.02
2309	2398	5.520748	AGATTGGACTTGGGTATCTTTGT	57.479	39.130	0.00	0.00	0.00	2.83
2312	2401	4.715534	TGGACTTGGGTATCTTTGTTGA	57.284	40.909	0.00	0.00	0.00	3.18
2320	2409	4.120589	GGGTATCTTTGTTGAGATCGACC	58.879	47.826	0.00	0.00	37.54	4.79
2445	2534	0.667184	CACCACCTTTTTCGCCATGC	60.667	55.000	0.00	0.00	0.00	4.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.495155	TATCATGGCAACTGCAGTGT	57.505	45.000	22.49	7.95	44.36	3.55
1	2	2.686405	ACATATCATGGCAACTGCAGTG	59.314	45.455	22.49	15.42	44.36	3.66
2	3	3.008835	ACATATCATGGCAACTGCAGT	57.991	42.857	15.25	15.25	44.36	4.40
3	4	4.109766	CAAACATATCATGGCAACTGCAG	58.890	43.478	13.48	13.48	44.36	4.41
5	6	2.861935	GCAAACATATCATGGCAACTGC	59.138	45.455	0.00	0.00	41.14	4.40
6	7	4.112716	TGCAAACATATCATGGCAACTG	57.887	40.909	0.00	0.00	37.61	3.16
7	8	6.659745	ATATGCAAACATATCATGGCAACT	57.340	33.333	0.00	0.00	44.55	3.16
45	46	4.689071	ACGTGACAAAATGAGTAGTGACA	58.311	39.130	0.00	0.00	0.00	3.58
46	47	6.584942	TCATACGTGACAAAATGAGTAGTGAC	59.415	38.462	0.00	0.00	0.00	3.67
195	196	3.944650	CGAAACATATCAACATGGGGTCA	59.055	43.478	0.00	0.00	0.00	4.02
226	236	1.198713	TGGCAACTTCTGGGCAAAAA	58.801	45.000	0.00	0.00	36.57	1.94
248	260	8.487313	CACTATGGCAACTATAGTGTAAACAA	57.513	34.615	17.94	0.00	44.60	2.83
280	292	6.843069	AAAATTGCCACATGACAACTTTAC	57.157	33.333	0.00	0.00	0.00	2.01
374	391	6.621164	GCACTTAAAATTGCCATGGTTCAATG	60.621	38.462	14.67	5.84	33.61	2.82
410	427	6.105333	GCCATGCACCATAAACTAAAATTGA	58.895	36.000	0.00	0.00	0.00	2.57
501	523	6.623486	TGAAGTTGCCATGATATGTTTCAAG	58.377	36.000	0.00	0.00	0.00	3.02
528	552	7.672240	TGCACATGAATTGCCATGATATTTAT	58.328	30.769	12.68	0.00	44.98	1.40
814	862	7.009815	CGCTCATTAATGTCAAGATTTTTGCAT	59.990	33.333	14.97	0.00	0.00	3.96
915	963	1.941999	GCAGGCAGGAATGGCAAGTC	61.942	60.000	4.56	0.00	36.76	3.01
923	971	0.899720	CAAATGTGGCAGGCAGGAAT	59.100	50.000	0.00	0.00	0.00	3.01
925	973	0.178967	TTCAAATGTGGCAGGCAGGA	60.179	50.000	0.00	0.00	0.00	3.86
954	1002	3.272581	GCTCTAGTCGAGTGTAAGGTCT	58.727	50.000	2.10	0.00	41.98	3.85
987	1035	5.127031	GCTCCCTCTCATATTGAGTATCTCC	59.873	48.000	4.56	0.00	44.58	3.71
994	1042	3.390639	AGGTTGCTCCCTCTCATATTGAG	59.609	47.826	0.00	0.00	40.45	3.02
995	1043	3.387962	AGGTTGCTCCCTCTCATATTGA	58.612	45.455	0.00	0.00	36.75	2.57
1076	1124	9.608617	CACAAGATGATAATGACAAAGATATGC	57.391	33.333	0.00	0.00	0.00	3.14
1116	1164	7.712264	TGTAAGTACTTTTCGGAAAATCGAA	57.288	32.000	14.49	0.00	45.77	3.71
1131	1179	3.494626	GCACATGCGCATATGTAAGTACT	59.505	43.478	27.85	0.00	39.17	2.73
1195	1243	1.346395	ACCACCGTTTCAGTAGCATCA	59.654	47.619	0.00	0.00	0.00	3.07
1203	1251	2.680841	TCTTGTTTGACCACCGTTTCAG	59.319	45.455	0.00	0.00	0.00	3.02
1209	1257	0.240945	GCCATCTTGTTTGACCACCG	59.759	55.000	0.00	0.00	0.00	4.94
1213	1261	0.240945	CACGGCCATCTTGTTTGACC	59.759	55.000	2.24	0.00	0.00	4.02
1233	1281	1.924524	CGTCAGTACTTGTATTGGCCG	59.075	52.381	0.00	3.34	0.00	6.13
1237	1285	3.789756	CGGTAGCGTCAGTACTTGTATTG	59.210	47.826	6.07	0.00	0.00	1.90
1315	1363	2.168936	TGAAAGATGGCATCCCAAATGC	59.831	45.455	23.33	7.37	46.14	3.56
1316	1364	3.702548	TCTGAAAGATGGCATCCCAAATG	59.297	43.478	23.33	10.13	46.14	2.32
1354	1402	0.801251	CTTTCTGGCAGCAGTAGCAC	59.199	55.000	10.34	0.00	45.49	4.40
1435	1483	0.182537	CCGATGGAGGTGGGCATTTA	59.817	55.000	0.00	0.00	0.00	1.40
1450	1498	6.726299	TGAAATTCTATCATAGAGACCCCGAT	59.274	38.462	0.00	0.00	35.96	4.18
1462	1510	5.674525	TGTTCGAGCCTGAAATTCTATCAT	58.325	37.500	0.00	0.00	0.00	2.45
1463	1511	5.084818	TGTTCGAGCCTGAAATTCTATCA	57.915	39.130	0.00	0.00	0.00	2.15
1524	1575	3.114616	CGACAGAGCCAGTTGCCG	61.115	66.667	0.00	0.00	42.71	5.69
1547	1598	7.075797	TCCCCTATCTCTATTGTCAAATCTGA	58.924	38.462	0.00	0.00	0.00	3.27
1572	1623	3.401002	AGGACTCTGCCTCTCCTATGTAT	59.599	47.826	0.00	0.00	32.27	2.29
1711	1772	0.036732	TCTTGCAGAAGGGTTCGCAT	59.963	50.000	6.90	0.00	38.35	4.73
1723	1784	0.618968	ACTACCCTCCCCTCTTGCAG	60.619	60.000	0.00	0.00	0.00	4.41
1742	1804	3.758554	GGGGTCGGCGTACTCTATATAAA	59.241	47.826	6.85	0.00	0.00	1.40
1773	1835	3.935818	TTGAACCCCTGTGTAACTGAA	57.064	42.857	0.00	0.00	38.12	3.02
1832	1896	4.668289	GTCACCATAAAGCCCATTAAACG	58.332	43.478	0.00	0.00	0.00	3.60
1842	1906	2.380084	TCACTCCGTCACCATAAAGC	57.620	50.000	0.00	0.00	0.00	3.51
1905	1969	3.446161	ACCGTCATTATCTCACTCGGAAA	59.554	43.478	7.66	0.00	39.74	3.13
1968	2055	5.221185	CCGAAATCCTCATGAATTGCAATCT	60.221	40.000	13.38	3.05	0.00	2.40
1976	2063	2.170607	ACCGACCGAAATCCTCATGAAT	59.829	45.455	0.00	0.00	0.00	2.57
1991	2078	6.426025	ACAAAGTTAAACAGAAGATACCGACC	59.574	38.462	0.00	0.00	0.00	4.79
2021	2108	3.133721	AGGATATCACACAAGAGGCTGAC	59.866	47.826	4.83	0.00	0.00	3.51
2147	2234	1.244019	ACATTCAGTCGGGCCAAAGC	61.244	55.000	4.39	0.00	38.76	3.51
2170	2257	1.545706	GCTCCCGGGAAAGTGTCTCT	61.546	60.000	26.68	0.00	0.00	3.10
2222	2310	0.661780	GAATCGATCGAGGCGACTGG	60.662	60.000	23.84	0.00	44.43	4.00
2295	2384	5.292101	GTCGATCTCAACAAAGATACCCAAG	59.708	44.000	0.00	0.00	36.13	3.61
2309	2398	2.270923	CAGCAAATCGGTCGATCTCAA	58.729	47.619	6.32	0.00	33.08	3.02
2312	2401	1.148157	CGCAGCAAATCGGTCGATCT	61.148	55.000	6.32	0.00	33.08	2.75
2320	2409	1.705337	AATCCGGACGCAGCAAATCG	61.705	55.000	6.12	0.00	0.00	3.34
2390	2479	2.607750	TCTCCACCTGCCCCACTC	60.608	66.667	0.00	0.00	0.00	3.51
2445	2534	3.605749	AACCGGTGCCCACTCGATG	62.606	63.158	8.52	0.00	0.00	3.84

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.