Multiple sequence alignment - TraesCS5B01G102700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G102700 chr5B 100.000 5073 0 0 1 5073 136435164 136430092 0.000000e+00 9369.0
1 TraesCS5B01G102700 chr5B 78.992 238 39 8 2546 2779 508590613 508590383 8.800000e-33 152.0
2 TraesCS5B01G102700 chr5D 95.406 3809 107 33 553 4351 123500011 123496261 0.000000e+00 6002.0
3 TraesCS5B01G102700 chr5D 91.022 401 27 6 1 395 123500475 123500078 2.690000e-147 532.0
4 TraesCS5B01G102700 chr5D 82.394 142 19 5 324 460 409881591 409881731 8.920000e-23 119.0
5 TraesCS5B01G102700 chr5D 81.301 123 22 1 69 190 221009410 221009288 1.160000e-16 99.0
6 TraesCS5B01G102700 chr5A 94.785 3739 125 23 432 4130 136407571 136403863 0.000000e+00 5760.0
7 TraesCS5B01G102700 chr5A 91.961 311 20 3 1 306 136407949 136407639 1.010000e-116 431.0
8 TraesCS5B01G102700 chr5A 79.675 123 23 2 69 190 295318947 295318826 2.520000e-13 87.9
9 TraesCS5B01G102700 chr5A 87.671 73 8 1 323 395 136407642 136407571 3.250000e-12 84.2
10 TraesCS5B01G102700 chr1B 83.181 1094 124 29 2631 3709 441208321 441209369 0.000000e+00 946.0
11 TraesCS5B01G102700 chr1B 85.491 448 44 10 4389 4826 618386437 618386873 1.000000e-121 448.0
12 TraesCS5B01G102700 chr1B 95.541 157 7 0 4917 5073 633623255 633623099 8.430000e-63 252.0
13 TraesCS5B01G102700 chrUn 93.585 530 20 5 4389 4909 96415310 96414786 0.000000e+00 778.0
14 TraesCS5B01G102700 chr3B 88.462 494 36 9 4396 4874 444678280 444677793 1.220000e-160 577.0
15 TraesCS5B01G102700 chr7D 83.476 466 44 19 2805 3266 626386393 626385957 2.200000e-108 403.0
16 TraesCS5B01G102700 chr7D 86.207 377 41 6 3300 3667 626385956 626385582 1.020000e-106 398.0
17 TraesCS5B01G102700 chr7D 87.594 266 27 4 2386 2645 626387168 626386903 2.300000e-78 303.0
18 TraesCS5B01G102700 chr7D 83.957 187 14 3 2634 2820 626386883 626386713 1.130000e-36 165.0
19 TraesCS5B01G102700 chr1A 93.548 155 9 1 4919 5073 550222673 550222826 3.950000e-56 230.0
20 TraesCS5B01G102700 chr6B 97.222 108 3 0 4916 5023 17992398 17992505 3.120000e-42 183.0
21 TraesCS5B01G102700 chr2B 88.889 108 12 0 2386 2493 52916212 52916319 3.190000e-27 134.0
22 TraesCS5B01G102700 chr2B 82.394 142 21 4 319 457 683157690 683157830 2.480000e-23 121.0
23 TraesCS5B01G102700 chr2B 82.716 81 8 6 4389 4464 653685959 653685880 3.280000e-07 67.6
24 TraesCS5B01G102700 chr7A 87.302 63 6 2 4388 4448 732594796 732594734 2.530000e-08 71.3
25 TraesCS5B01G102700 chr2A 76.471 153 22 10 306 457 87879372 87879511 2.530000e-08 71.3
26 TraesCS5B01G102700 chr2D 89.130 46 2 2 4388 4432 32050828 32050785 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G102700 chr5B 136430092 136435164 5072 True 9369.000000 9369 100.000000 1 5073 1 chr5B.!!$R1 5072
1 TraesCS5B01G102700 chr5D 123496261 123500475 4214 True 3267.000000 6002 93.214000 1 4351 2 chr5D.!!$R2 4350
2 TraesCS5B01G102700 chr5A 136403863 136407949 4086 True 2091.733333 5760 91.472333 1 4130 3 chr5A.!!$R2 4129
3 TraesCS5B01G102700 chr1B 441208321 441209369 1048 False 946.000000 946 83.181000 2631 3709 1 chr1B.!!$F1 1078
4 TraesCS5B01G102700 chrUn 96414786 96415310 524 True 778.000000 778 93.585000 4389 4909 1 chrUn.!!$R1 520
5 TraesCS5B01G102700 chr7D 626385582 626387168 1586 True 317.250000 403 85.308500 2386 3667 4 chr7D.!!$R1 1281

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 977 0.095417 GCGATTTCGTGGAGCAGTTC 59.905 55.000 1.55 0.0 42.22 3.01 F
966 981 0.468226 TTTCGTGGAGCAGTTCCTGT 59.532 50.000 4.73 0.0 46.92 4.00 F
1040 1055 1.205893 ACGATCTCTTTCCCTGCTGTC 59.794 52.381 0.00 0.0 0.00 3.51 F
2687 2766 0.039165 GCAAACAGAGAAAAGCCGGG 60.039 55.000 2.18 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2114 1.139989 ACAGCACTCGATTGACAACG 58.860 50.000 6.99 0.0 0.00 4.10 R
2687 2766 2.887152 ACACTTGATCCCTTGTGAAAGC 59.113 45.455 10.13 0.0 34.81 3.51 R
2983 3397 2.223618 GGCGGTTTGTGTTTAGCTTTCA 60.224 45.455 0.00 0.0 0.00 2.69 R
4174 4604 0.038526 GGCTCCGGTACCATATGTCG 60.039 60.000 13.54 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.647225 TGCCGCAATATTAAGATGCATATGA 59.353 36.000 6.97 0.00 40.04 2.15
110 116 4.520111 TGCAGCATCACTTAGAAACAACAT 59.480 37.500 0.00 0.00 0.00 2.71
112 118 5.634896 CAGCATCACTTAGAAACAACATCC 58.365 41.667 0.00 0.00 0.00 3.51
154 160 8.936864 GGGGTGATTGTCTCTAATTTATTATCG 58.063 37.037 0.00 0.00 0.00 2.92
230 236 4.326826 TCACTTGAAGTTAATGCTCCCAG 58.673 43.478 0.00 0.00 0.00 4.45
366 372 2.134287 GGAGCGAGCTATCCCACCA 61.134 63.158 0.00 0.00 0.00 4.17
395 401 2.737180 CTGAGTGGCTCGTGGTGT 59.263 61.111 0.00 0.00 32.35 4.16
396 402 1.069765 CTGAGTGGCTCGTGGTGTT 59.930 57.895 0.00 0.00 32.35 3.32
397 403 1.224069 CTGAGTGGCTCGTGGTGTTG 61.224 60.000 0.00 0.00 32.35 3.33
398 404 1.069090 GAGTGGCTCGTGGTGTTGA 59.931 57.895 0.00 0.00 0.00 3.18
399 405 0.946221 GAGTGGCTCGTGGTGTTGAG 60.946 60.000 0.00 0.00 35.30 3.02
400 406 1.069090 GTGGCTCGTGGTGTTGAGA 59.931 57.895 0.00 0.00 34.04 3.27
401 407 0.946221 GTGGCTCGTGGTGTTGAGAG 60.946 60.000 0.00 0.00 34.04 3.20
402 408 1.112916 TGGCTCGTGGTGTTGAGAGA 61.113 55.000 0.00 0.00 34.04 3.10
403 409 0.247736 GGCTCGTGGTGTTGAGAGAT 59.752 55.000 0.00 0.00 34.04 2.75
404 410 1.338200 GGCTCGTGGTGTTGAGAGATT 60.338 52.381 0.00 0.00 34.04 2.40
405 411 2.417719 GCTCGTGGTGTTGAGAGATTT 58.582 47.619 0.00 0.00 34.04 2.17
406 412 2.413453 GCTCGTGGTGTTGAGAGATTTC 59.587 50.000 0.00 0.00 34.04 2.17
407 413 3.862642 GCTCGTGGTGTTGAGAGATTTCT 60.863 47.826 0.00 0.00 34.04 2.52
408 414 4.310769 CTCGTGGTGTTGAGAGATTTCTT 58.689 43.478 0.00 0.00 34.04 2.52
409 415 4.307432 TCGTGGTGTTGAGAGATTTCTTC 58.693 43.478 0.00 0.00 32.53 2.87
410 416 4.039245 TCGTGGTGTTGAGAGATTTCTTCT 59.961 41.667 0.00 0.00 37.41 2.85
411 417 5.243060 TCGTGGTGTTGAGAGATTTCTTCTA 59.757 40.000 0.00 0.00 33.74 2.10
412 418 6.071334 TCGTGGTGTTGAGAGATTTCTTCTAT 60.071 38.462 0.00 0.00 33.74 1.98
413 419 7.122204 TCGTGGTGTTGAGAGATTTCTTCTATA 59.878 37.037 0.00 0.00 33.74 1.31
414 420 7.759886 CGTGGTGTTGAGAGATTTCTTCTATAA 59.240 37.037 0.00 0.00 33.74 0.98
415 421 9.436957 GTGGTGTTGAGAGATTTCTTCTATAAA 57.563 33.333 0.00 0.00 33.74 1.40
426 432 9.785982 AGATTTCTTCTATAAAACTATGCCTCC 57.214 33.333 0.00 0.00 30.96 4.30
427 433 9.561069 GATTTCTTCTATAAAACTATGCCTCCA 57.439 33.333 0.00 0.00 0.00 3.86
428 434 9.920946 ATTTCTTCTATAAAACTATGCCTCCAA 57.079 29.630 0.00 0.00 0.00 3.53
429 435 8.964476 TTCTTCTATAAAACTATGCCTCCAAG 57.036 34.615 0.00 0.00 0.00 3.61
430 436 7.509546 TCTTCTATAAAACTATGCCTCCAAGG 58.490 38.462 0.00 0.00 38.80 3.61
431 437 6.187727 TCTATAAAACTATGCCTCCAAGGG 57.812 41.667 0.00 0.00 35.37 3.95
440 446 2.522271 CCTCCAAGGGCTAGTCCTC 58.478 63.158 18.29 0.44 35.80 3.71
441 447 1.395826 CCTCCAAGGGCTAGTCCTCG 61.396 65.000 18.29 5.02 35.80 4.63
450 456 1.477923 GGCTAGTCCTCGATGGTCTCT 60.478 57.143 4.51 3.94 35.81 3.10
522 534 6.500684 TCATTTCCTCTGTTGATTTGCTAC 57.499 37.500 0.00 0.00 0.00 3.58
524 536 3.953712 TCCTCTGTTGATTTGCTACGA 57.046 42.857 0.00 0.00 0.00 3.43
528 540 4.747108 CCTCTGTTGATTTGCTACGATAGG 59.253 45.833 0.00 0.00 43.77 2.57
535 547 6.474140 TGATTTGCTACGATAGGACCTAAA 57.526 37.500 5.03 0.00 43.77 1.85
536 548 6.513180 TGATTTGCTACGATAGGACCTAAAG 58.487 40.000 5.03 5.23 43.77 1.85
537 549 5.927281 TTTGCTACGATAGGACCTAAAGT 57.073 39.130 5.03 10.88 43.77 2.66
544 556 7.381678 GCTACGATAGGACCTAAAGTTATGTTG 59.618 40.741 14.86 0.22 43.77 3.33
596 609 5.376625 TCAGATTATCTTAGGCGCCAAAAT 58.623 37.500 31.54 18.07 0.00 1.82
599 612 7.173218 TCAGATTATCTTAGGCGCCAAAATAAG 59.827 37.037 31.54 25.40 0.00 1.73
671 685 7.962995 AAAAAGAAGAAGAAGAAGAAACCCT 57.037 32.000 0.00 0.00 0.00 4.34
736 750 2.513204 CTGAGCCACAGCGGATGG 60.513 66.667 0.00 0.00 46.67 3.51
961 976 0.602638 TGCGATTTCGTGGAGCAGTT 60.603 50.000 1.55 0.00 42.22 3.16
962 977 0.095417 GCGATTTCGTGGAGCAGTTC 59.905 55.000 1.55 0.00 42.22 3.01
963 978 0.721718 CGATTTCGTGGAGCAGTTCC 59.278 55.000 0.00 0.00 46.98 3.62
964 979 1.673033 CGATTTCGTGGAGCAGTTCCT 60.673 52.381 4.73 0.00 46.92 3.36
965 980 1.734465 GATTTCGTGGAGCAGTTCCTG 59.266 52.381 4.73 0.00 46.92 3.86
966 981 0.468226 TTTCGTGGAGCAGTTCCTGT 59.532 50.000 4.73 0.00 46.92 4.00
1040 1055 1.205893 ACGATCTCTTTCCCTGCTGTC 59.794 52.381 0.00 0.00 0.00 3.51
1109 1124 7.119262 CGTAAATGTGAAATTAAGAGGTCCTGT 59.881 37.037 0.00 0.00 0.00 4.00
1110 1125 7.839680 AAATGTGAAATTAAGAGGTCCTGTT 57.160 32.000 6.51 6.51 0.00 3.16
1132 1147 4.670896 ATGGGGTTCTTGTTTTCTGTTG 57.329 40.909 0.00 0.00 0.00 3.33
1267 1282 6.537453 ACTAGATGTACTGCTGAGTTGATT 57.463 37.500 0.00 0.00 33.21 2.57
1353 1368 3.316308 AGCATCTTGTTGACACTGGAAAC 59.684 43.478 0.00 0.00 0.00 2.78
1409 1424 7.862512 AAATTTTGTTCACCATTTGTCATGT 57.137 28.000 0.00 0.00 0.00 3.21
1421 1436 6.128391 ACCATTTGTCATGTACACGTTGATAC 60.128 38.462 0.00 0.00 38.00 2.24
1436 1451 7.011773 CACGTTGATACATTCTTCAAGACAAG 58.988 38.462 0.00 0.00 32.79 3.16
1469 1484 7.305474 TCCAAAAATCTCTTATTTTCTGCGTC 58.695 34.615 0.00 0.00 31.53 5.19
1539 1554 4.111375 TCCAGATAGTTCGTTCTTCAGC 57.889 45.455 0.00 0.00 0.00 4.26
1660 1676 9.770097 TTACATTTGCCAATTTAACAGAATTCA 57.230 25.926 8.44 0.00 0.00 2.57
1681 1697 2.847327 TTGAGCTCAACAAGGAGGAG 57.153 50.000 25.16 0.00 35.41 3.69
1727 1743 1.787847 CTAGGTTTGCAAGGCGACG 59.212 57.895 0.00 0.00 0.00 5.12
1741 1757 3.103911 GACGTGTCGGGTTCTGCG 61.104 66.667 0.00 0.00 0.00 5.18
1810 1826 8.224437 CCTTTTCTGTATTTTCGAGTCTCTTTC 58.776 37.037 0.00 0.00 0.00 2.62
1866 1882 6.563422 CATGGTTTTCTTCTTGTGAGTTGAA 58.437 36.000 0.00 0.00 0.00 2.69
1904 1920 4.778579 ACATTCAGGTCATGGAGATTGAG 58.221 43.478 0.00 0.00 0.00 3.02
2026 2042 4.715297 TCTCTTATAGGAGTTTGGACCACC 59.285 45.833 11.29 0.00 35.11 4.61
2054 2070 6.324254 ACCTCAGTAGTACTTCAGAGTTTGTT 59.676 38.462 16.93 0.00 37.33 2.83
2179 2195 8.976986 ACAAGAATGCAAATAAGTTGATCTTC 57.023 30.769 0.00 0.00 39.87 2.87
2566 2612 5.804639 ACCAACTAATGCATGAGAAGTACA 58.195 37.500 18.56 0.00 0.00 2.90
2687 2766 0.039165 GCAAACAGAGAAAAGCCGGG 60.039 55.000 2.18 0.00 0.00 5.73
2759 2838 6.065374 TGTATACTCCTTCTGTCATCCTCTC 58.935 44.000 4.17 0.00 0.00 3.20
2983 3397 8.782137 AATAGCCCATATTGTATCAAAAAGGT 57.218 30.769 0.00 0.00 32.65 3.50
3332 3751 7.550906 GTGCTGATGAAGAGGTATAAATATCCC 59.449 40.741 0.00 0.00 0.00 3.85
3361 3788 7.168219 ACTCTCATTTACTTCAAGCCACAATA 58.832 34.615 0.00 0.00 0.00 1.90
3375 3802 3.625764 GCCACAATAACTAAGCGAATCCA 59.374 43.478 0.00 0.00 0.00 3.41
3437 3865 7.010923 CAGACTATTGACAAGCTGATAGAAACC 59.989 40.741 0.00 0.00 0.00 3.27
3556 3984 5.273674 TGCATGTTTTGACCTGAATTTCA 57.726 34.783 0.00 0.00 0.00 2.69
3600 4028 0.033109 TCCAAGAGATCCAGGAGCGA 60.033 55.000 0.00 0.00 0.00 4.93
3668 4096 5.126061 AGCAGGTAAATGACTAAATGCAAGG 59.874 40.000 0.00 0.00 34.93 3.61
3721 4149 0.737219 GCATCATCAGTTCACCTGGC 59.263 55.000 0.00 0.00 41.83 4.85
3728 4156 2.045926 GTTCACCTGGCATCCGCT 60.046 61.111 0.00 0.00 38.60 5.52
3775 4203 1.764571 TACTGGTTGAGGCGCAAGGT 61.765 55.000 10.83 6.65 37.12 3.50
3798 4226 3.265791 AGATCCTGAACAACATCGAAGC 58.734 45.455 0.00 0.00 0.00 3.86
3886 4314 5.885912 AGCTTCAGTTTGTTCCTGACTTTTA 59.114 36.000 0.00 0.00 38.62 1.52
3897 4325 6.650807 TGTTCCTGACTTTTACTGATCATGTC 59.349 38.462 0.00 0.00 0.00 3.06
3898 4326 6.611613 TCCTGACTTTTACTGATCATGTCT 57.388 37.500 0.00 0.00 0.00 3.41
3979 4409 2.335712 GGCGAGGGTCCTGCAAAAG 61.336 63.158 0.00 0.00 0.00 2.27
4053 4483 1.530031 CGTCATCGTCCTCTCGTTGAG 60.530 57.143 0.00 2.13 39.22 3.02
4057 4487 0.250597 TCGTCCTCTCGTTGAGACCA 60.251 55.000 9.16 0.00 45.39 4.02
4062 4492 1.186200 CTCTCGTTGAGACCATGGGA 58.814 55.000 18.09 0.14 45.39 4.37
4063 4493 1.135915 CTCTCGTTGAGACCATGGGAG 59.864 57.143 18.09 10.94 45.39 4.30
4075 4505 1.771255 CCATGGGAGAAGAAGTAGGGG 59.229 57.143 2.85 0.00 0.00 4.79
4076 4506 2.629639 CCATGGGAGAAGAAGTAGGGGA 60.630 54.545 2.85 0.00 0.00 4.81
4077 4507 3.115390 CATGGGAGAAGAAGTAGGGGAA 58.885 50.000 0.00 0.00 0.00 3.97
4078 4508 3.285290 TGGGAGAAGAAGTAGGGGAAA 57.715 47.619 0.00 0.00 0.00 3.13
4079 4509 3.604787 TGGGAGAAGAAGTAGGGGAAAA 58.395 45.455 0.00 0.00 0.00 2.29
4080 4510 3.587506 TGGGAGAAGAAGTAGGGGAAAAG 59.412 47.826 0.00 0.00 0.00 2.27
4081 4511 3.844804 GGGAGAAGAAGTAGGGGAAAAGA 59.155 47.826 0.00 0.00 0.00 2.52
4082 4512 4.288887 GGGAGAAGAAGTAGGGGAAAAGAA 59.711 45.833 0.00 0.00 0.00 2.52
4083 4513 5.247084 GGAGAAGAAGTAGGGGAAAAGAAC 58.753 45.833 0.00 0.00 0.00 3.01
4084 4514 4.895961 AGAAGAAGTAGGGGAAAAGAACG 58.104 43.478 0.00 0.00 0.00 3.95
4174 4604 7.079475 AGTTTTTGTTGTGTATATACGCCAAC 58.921 34.615 26.11 26.11 39.27 3.77
4176 4606 4.107363 TGTTGTGTATATACGCCAACGA 57.893 40.909 26.51 19.00 43.93 3.85
4185 4615 5.648178 ATATACGCCAACGACATATGGTA 57.352 39.130 7.80 0.00 43.93 3.25
4195 4625 0.468585 ACATATGGTACCGGAGCCGA 60.469 55.000 9.46 2.07 42.83 5.54
4196 4626 0.677288 CATATGGTACCGGAGCCGAA 59.323 55.000 9.46 1.95 42.83 4.30
4197 4627 0.966920 ATATGGTACCGGAGCCGAAG 59.033 55.000 9.46 0.00 42.83 3.79
4198 4628 0.106569 TATGGTACCGGAGCCGAAGA 60.107 55.000 9.46 0.00 42.83 2.87
4210 4646 4.321601 CGGAGCCGAAGATTCTCTGATTAT 60.322 45.833 2.00 0.00 42.83 1.28
4211 4647 5.546526 GGAGCCGAAGATTCTCTGATTATT 58.453 41.667 0.00 0.00 0.00 1.40
4214 4650 7.307692 GGAGCCGAAGATTCTCTGATTATTTTC 60.308 40.741 0.00 0.00 0.00 2.29
4219 4655 9.102757 CGAAGATTCTCTGATTATTTTCTTGGA 57.897 33.333 0.00 0.00 0.00 3.53
4222 4658 8.555729 AGATTCTCTGATTATTTTCTTGGAGGT 58.444 33.333 0.00 0.00 0.00 3.85
4237 4673 3.426615 TGGAGGTGTGTGAACTTTGTTT 58.573 40.909 0.00 0.00 0.00 2.83
4252 4688 4.867608 ACTTTGTTTGATTTTGTGGTTCGG 59.132 37.500 0.00 0.00 0.00 4.30
4273 4709 6.785191 TCGGATAACAAAATTCAGCTTGATC 58.215 36.000 0.00 0.00 0.00 2.92
4274 4710 6.374053 TCGGATAACAAAATTCAGCTTGATCA 59.626 34.615 0.00 0.00 0.00 2.92
4275 4711 7.067372 TCGGATAACAAAATTCAGCTTGATCAT 59.933 33.333 0.00 0.00 0.00 2.45
4276 4712 7.377928 CGGATAACAAAATTCAGCTTGATCATC 59.622 37.037 0.00 0.00 0.00 2.92
4306 4742 1.065926 TCTCTCCGCATTTGTCTGCAT 60.066 47.619 0.00 0.00 42.40 3.96
4308 4744 2.161855 TCTCCGCATTTGTCTGCATTT 58.838 42.857 0.00 0.00 42.40 2.32
4310 4746 2.161855 TCCGCATTTGTCTGCATTTCT 58.838 42.857 0.00 0.00 42.40 2.52
4311 4747 2.095110 TCCGCATTTGTCTGCATTTCTG 60.095 45.455 0.00 0.00 42.40 3.02
4312 4748 2.095110 CCGCATTTGTCTGCATTTCTGA 60.095 45.455 0.00 0.00 42.40 3.27
4323 4759 2.429971 TGCATTTCTGACTTTTGTGGCA 59.570 40.909 0.00 0.00 0.00 4.92
4324 4760 3.054878 GCATTTCTGACTTTTGTGGCAG 58.945 45.455 0.00 0.00 0.00 4.85
4344 4780 4.802039 GCAGCAATGAGTGTCCATTATTTG 59.198 41.667 0.00 0.00 35.20 2.32
4351 4787 5.785243 TGAGTGTCCATTATTTGTGTCGTA 58.215 37.500 0.00 0.00 0.00 3.43
4352 4788 6.403049 TGAGTGTCCATTATTTGTGTCGTAT 58.597 36.000 0.00 0.00 0.00 3.06
4353 4789 6.876789 TGAGTGTCCATTATTTGTGTCGTATT 59.123 34.615 0.00 0.00 0.00 1.89
4354 4790 7.389330 TGAGTGTCCATTATTTGTGTCGTATTT 59.611 33.333 0.00 0.00 0.00 1.40
4355 4791 7.748847 AGTGTCCATTATTTGTGTCGTATTTC 58.251 34.615 0.00 0.00 0.00 2.17
4356 4792 6.964934 GTGTCCATTATTTGTGTCGTATTTCC 59.035 38.462 0.00 0.00 0.00 3.13
4357 4793 6.882140 TGTCCATTATTTGTGTCGTATTTCCT 59.118 34.615 0.00 0.00 0.00 3.36
4358 4794 7.065324 TGTCCATTATTTGTGTCGTATTTCCTC 59.935 37.037 0.00 0.00 0.00 3.71
4359 4795 7.065324 GTCCATTATTTGTGTCGTATTTCCTCA 59.935 37.037 0.00 0.00 0.00 3.86
4360 4796 7.608376 TCCATTATTTGTGTCGTATTTCCTCAA 59.392 33.333 0.00 0.00 0.00 3.02
4361 4797 8.240682 CCATTATTTGTGTCGTATTTCCTCAAA 58.759 33.333 0.00 0.00 0.00 2.69
4362 4798 9.619316 CATTATTTGTGTCGTATTTCCTCAAAA 57.381 29.630 0.00 0.00 0.00 2.44
4434 4870 2.817258 CCCCTGTGCGAAATGAAAAGTA 59.183 45.455 0.00 0.00 0.00 2.24
4639 5080 6.475504 AGCGTCATCCATCCATTATTTATGA 58.524 36.000 0.00 0.00 36.26 2.15
4643 5084 9.398170 CGTCATCCATCCATTATTTATGAAAAC 57.602 33.333 0.00 0.00 36.26 2.43
4730 5175 1.574702 GCGGGACCTTGTGCAACTAC 61.575 60.000 0.00 0.00 38.04 2.73
4731 5176 0.034896 CGGGACCTTGTGCAACTACT 59.965 55.000 0.00 0.00 38.04 2.57
4732 5177 1.542547 CGGGACCTTGTGCAACTACTT 60.543 52.381 0.00 0.00 38.04 2.24
4733 5178 2.289195 CGGGACCTTGTGCAACTACTTA 60.289 50.000 0.00 0.00 38.04 2.24
4786 5231 6.422776 ACCGAGCAAATATGTAAAGAACAG 57.577 37.500 0.00 0.00 42.70 3.16
4789 5234 6.961554 CCGAGCAAATATGTAAAGAACAGAAC 59.038 38.462 0.00 0.00 42.70 3.01
4811 5256 9.618890 AGAACTAATAAACTGATGCACATGTAT 57.381 29.630 0.00 0.00 0.00 2.29
4818 5263 1.026584 GATGCACATGTATGCCTGCA 58.973 50.000 8.63 8.63 45.50 4.41
4839 5284 1.160137 CCTGTAACCTGCTGAAGTGC 58.840 55.000 0.00 0.00 0.00 4.40
4895 5340 2.124445 TAGTCGCTAGCGGCCTGA 60.124 61.111 36.00 20.28 46.20 3.86
4909 5354 1.608283 GGCCTGAAGCTGTCGTAAGTT 60.608 52.381 0.00 0.00 43.05 2.66
4910 5355 2.143925 GCCTGAAGCTGTCGTAAGTTT 58.856 47.619 0.00 0.00 38.99 2.66
4911 5356 2.548480 GCCTGAAGCTGTCGTAAGTTTT 59.452 45.455 0.00 0.00 38.99 2.43
4912 5357 3.003378 GCCTGAAGCTGTCGTAAGTTTTT 59.997 43.478 0.00 0.00 38.99 1.94
4940 5385 3.390175 TTTTTGAGGGGTGGAGAACAA 57.610 42.857 0.00 0.00 0.00 2.83
4941 5386 3.611025 TTTTGAGGGGTGGAGAACAAT 57.389 42.857 0.00 0.00 0.00 2.71
4942 5387 3.611025 TTTGAGGGGTGGAGAACAATT 57.389 42.857 0.00 0.00 0.00 2.32
4943 5388 3.611025 TTGAGGGGTGGAGAACAATTT 57.389 42.857 0.00 0.00 0.00 1.82
4944 5389 4.733077 TTGAGGGGTGGAGAACAATTTA 57.267 40.909 0.00 0.00 0.00 1.40
4945 5390 4.946160 TGAGGGGTGGAGAACAATTTAT 57.054 40.909 0.00 0.00 0.00 1.40
4946 5391 5.269554 TGAGGGGTGGAGAACAATTTATT 57.730 39.130 0.00 0.00 0.00 1.40
4947 5392 5.261216 TGAGGGGTGGAGAACAATTTATTC 58.739 41.667 0.00 0.00 0.00 1.75
4948 5393 5.222233 TGAGGGGTGGAGAACAATTTATTCA 60.222 40.000 2.80 0.00 0.00 2.57
4949 5394 5.842339 AGGGGTGGAGAACAATTTATTCAT 58.158 37.500 2.80 0.00 0.00 2.57
4950 5395 5.893824 AGGGGTGGAGAACAATTTATTCATC 59.106 40.000 2.80 0.00 0.00 2.92
4951 5396 5.656416 GGGGTGGAGAACAATTTATTCATCA 59.344 40.000 2.80 0.00 0.00 3.07
4952 5397 6.405842 GGGGTGGAGAACAATTTATTCATCAC 60.406 42.308 12.03 12.03 33.91 3.06
4953 5398 6.405842 GGGTGGAGAACAATTTATTCATCACC 60.406 42.308 21.16 21.16 43.31 4.02
4954 5399 6.152661 GGTGGAGAACAATTTATTCATCACCA 59.847 38.462 22.63 14.40 43.40 4.17
4955 5400 7.309744 GGTGGAGAACAATTTATTCATCACCAA 60.310 37.037 22.63 6.27 43.40 3.67
4956 5401 8.087750 GTGGAGAACAATTTATTCATCACCAAA 58.912 33.333 0.00 0.00 31.15 3.28
4957 5402 8.306038 TGGAGAACAATTTATTCATCACCAAAG 58.694 33.333 0.00 0.00 0.00 2.77
4958 5403 8.306761 GGAGAACAATTTATTCATCACCAAAGT 58.693 33.333 2.80 0.00 0.00 2.66
4959 5404 9.346725 GAGAACAATTTATTCATCACCAAAGTC 57.653 33.333 2.80 0.00 0.00 3.01
4960 5405 8.306761 AGAACAATTTATTCATCACCAAAGTCC 58.693 33.333 2.80 0.00 0.00 3.85
4961 5406 7.537596 ACAATTTATTCATCACCAAAGTCCA 57.462 32.000 0.00 0.00 0.00 4.02
4962 5407 7.378181 ACAATTTATTCATCACCAAAGTCCAC 58.622 34.615 0.00 0.00 0.00 4.02
4963 5408 7.015098 ACAATTTATTCATCACCAAAGTCCACA 59.985 33.333 0.00 0.00 0.00 4.17
4964 5409 5.957842 TTATTCATCACCAAAGTCCACAC 57.042 39.130 0.00 0.00 0.00 3.82
4965 5410 1.877637 TCATCACCAAAGTCCACACG 58.122 50.000 0.00 0.00 0.00 4.49
4966 5411 1.414550 TCATCACCAAAGTCCACACGA 59.585 47.619 0.00 0.00 0.00 4.35
4967 5412 1.800586 CATCACCAAAGTCCACACGAG 59.199 52.381 0.00 0.00 0.00 4.18
4968 5413 0.105964 TCACCAAAGTCCACACGAGG 59.894 55.000 0.00 0.00 0.00 4.63
4969 5414 0.179056 CACCAAAGTCCACACGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
4979 5424 2.010145 CACACGAGGTGGGATACAAG 57.990 55.000 0.42 0.00 39.67 3.16
4980 5425 1.548719 CACACGAGGTGGGATACAAGA 59.451 52.381 0.42 0.00 39.67 3.02
4981 5426 2.028476 CACACGAGGTGGGATACAAGAA 60.028 50.000 0.42 0.00 39.67 2.52
4982 5427 2.233922 ACACGAGGTGGGATACAAGAAG 59.766 50.000 0.42 0.00 37.94 2.85
4983 5428 1.831736 ACGAGGTGGGATACAAGAAGG 59.168 52.381 0.00 0.00 39.74 3.46
4984 5429 1.139058 CGAGGTGGGATACAAGAAGGG 59.861 57.143 0.00 0.00 39.74 3.95
4985 5430 2.197465 GAGGTGGGATACAAGAAGGGT 58.803 52.381 0.00 0.00 39.74 4.34
4986 5431 2.170817 GAGGTGGGATACAAGAAGGGTC 59.829 54.545 0.00 0.00 39.74 4.46
4987 5432 1.913419 GGTGGGATACAAGAAGGGTCA 59.087 52.381 0.00 0.00 39.74 4.02
4988 5433 2.509964 GGTGGGATACAAGAAGGGTCAT 59.490 50.000 0.00 0.00 39.74 3.06
4989 5434 3.545703 GTGGGATACAAGAAGGGTCATG 58.454 50.000 0.00 0.00 39.74 3.07
4990 5435 2.509548 TGGGATACAAGAAGGGTCATGG 59.490 50.000 0.00 0.00 39.74 3.66
4991 5436 2.158608 GGGATACAAGAAGGGTCATGGG 60.159 54.545 0.00 0.00 39.74 4.00
4992 5437 2.158608 GGATACAAGAAGGGTCATGGGG 60.159 54.545 0.00 0.00 0.00 4.96
4993 5438 1.295020 TACAAGAAGGGTCATGGGGG 58.705 55.000 0.00 0.00 0.00 5.40
4994 5439 0.776080 ACAAGAAGGGTCATGGGGGT 60.776 55.000 0.00 0.00 0.00 4.95
4995 5440 0.409484 CAAGAAGGGTCATGGGGGTT 59.591 55.000 0.00 0.00 0.00 4.11
4996 5441 0.409484 AAGAAGGGTCATGGGGGTTG 59.591 55.000 0.00 0.00 0.00 3.77
4997 5442 1.682344 GAAGGGTCATGGGGGTTGC 60.682 63.158 0.00 0.00 0.00 4.17
4998 5443 3.238197 AAGGGTCATGGGGGTTGCC 62.238 63.158 0.00 0.00 0.00 4.52
4999 5444 3.991318 GGGTCATGGGGGTTGCCA 61.991 66.667 0.00 0.00 0.00 4.92
5000 5445 2.119391 GGTCATGGGGGTTGCCAA 59.881 61.111 0.00 0.00 0.00 4.52
5001 5446 1.535202 GGTCATGGGGGTTGCCAAA 60.535 57.895 0.00 0.00 0.00 3.28
5002 5447 1.671166 GTCATGGGGGTTGCCAAAC 59.329 57.895 0.00 0.00 35.40 2.93
5029 5474 4.338710 CGCCCCGGACCCTGAAAA 62.339 66.667 0.73 0.00 0.00 2.29
5030 5475 2.116556 GCCCCGGACCCTGAAAAA 59.883 61.111 0.73 0.00 0.00 1.94
5031 5476 1.977009 GCCCCGGACCCTGAAAAAG 60.977 63.158 0.73 0.00 0.00 2.27
5032 5477 1.765074 CCCCGGACCCTGAAAAAGA 59.235 57.895 0.73 0.00 0.00 2.52
5033 5478 0.322546 CCCCGGACCCTGAAAAAGAG 60.323 60.000 0.73 0.00 0.00 2.85
5034 5479 0.960861 CCCGGACCCTGAAAAAGAGC 60.961 60.000 0.73 0.00 0.00 4.09
5035 5480 0.250727 CCGGACCCTGAAAAAGAGCA 60.251 55.000 0.00 0.00 0.00 4.26
5036 5481 1.604604 CGGACCCTGAAAAAGAGCAA 58.395 50.000 0.00 0.00 0.00 3.91
5037 5482 1.953686 CGGACCCTGAAAAAGAGCAAA 59.046 47.619 0.00 0.00 0.00 3.68
5038 5483 2.558359 CGGACCCTGAAAAAGAGCAAAT 59.442 45.455 0.00 0.00 0.00 2.32
5039 5484 3.005791 CGGACCCTGAAAAAGAGCAAATT 59.994 43.478 0.00 0.00 0.00 1.82
5040 5485 4.501400 CGGACCCTGAAAAAGAGCAAATTT 60.501 41.667 0.00 0.00 0.00 1.82
5041 5486 5.278758 CGGACCCTGAAAAAGAGCAAATTTA 60.279 40.000 0.00 0.00 0.00 1.40
5042 5487 6.159293 GGACCCTGAAAAAGAGCAAATTTAG 58.841 40.000 0.00 0.00 0.00 1.85
5043 5488 5.541845 ACCCTGAAAAAGAGCAAATTTAGC 58.458 37.500 0.00 0.00 0.00 3.09
5044 5489 5.305386 ACCCTGAAAAAGAGCAAATTTAGCT 59.695 36.000 12.87 12.87 46.82 3.32
5045 5490 6.493458 ACCCTGAAAAAGAGCAAATTTAGCTA 59.507 34.615 12.96 0.00 43.58 3.32
5046 5491 7.031975 CCCTGAAAAAGAGCAAATTTAGCTAG 58.968 38.462 12.96 7.02 43.58 3.42
5047 5492 7.309438 CCCTGAAAAAGAGCAAATTTAGCTAGT 60.309 37.037 12.96 4.12 43.58 2.57
5048 5493 8.084684 CCTGAAAAAGAGCAAATTTAGCTAGTT 58.915 33.333 12.96 8.54 43.58 2.24
5049 5494 9.468532 CTGAAAAAGAGCAAATTTAGCTAGTTT 57.531 29.630 12.96 12.42 43.58 2.66
5054 5499 9.846248 AAAGAGCAAATTTAGCTAGTTTATGTG 57.154 29.630 12.96 1.28 43.58 3.21
5055 5500 7.475840 AGAGCAAATTTAGCTAGTTTATGTGC 58.524 34.615 12.96 11.47 43.58 4.57
5056 5501 6.564328 AGCAAATTTAGCTAGTTTATGTGCC 58.436 36.000 11.76 3.38 41.32 5.01
5057 5502 6.378280 AGCAAATTTAGCTAGTTTATGTGCCT 59.622 34.615 11.76 4.85 41.32 4.75
5058 5503 6.693113 GCAAATTTAGCTAGTTTATGTGCCTC 59.307 38.462 9.51 0.00 0.00 4.70
5059 5504 7.628366 GCAAATTTAGCTAGTTTATGTGCCTCA 60.628 37.037 9.51 0.00 0.00 3.86
5060 5505 8.408601 CAAATTTAGCTAGTTTATGTGCCTCAT 58.591 33.333 6.04 0.00 40.25 2.90
5061 5506 9.627123 AAATTTAGCTAGTTTATGTGCCTCATA 57.373 29.630 0.00 0.00 37.91 2.15
5062 5507 8.839310 ATTTAGCTAGTTTATGTGCCTCATAG 57.161 34.615 0.00 0.00 39.73 2.23
5063 5508 5.878406 AGCTAGTTTATGTGCCTCATAGT 57.122 39.130 0.00 0.00 39.73 2.12
5064 5509 6.240549 AGCTAGTTTATGTGCCTCATAGTT 57.759 37.500 0.00 0.00 39.73 2.24
5065 5510 6.284459 AGCTAGTTTATGTGCCTCATAGTTC 58.716 40.000 0.00 0.00 39.73 3.01
5066 5511 6.049149 GCTAGTTTATGTGCCTCATAGTTCA 58.951 40.000 0.00 0.00 39.73 3.18
5067 5512 6.018669 GCTAGTTTATGTGCCTCATAGTTCAC 60.019 42.308 0.00 0.00 39.73 3.18
5068 5513 5.804639 AGTTTATGTGCCTCATAGTTCACA 58.195 37.500 0.00 0.00 42.66 3.58
5069 5514 5.877012 AGTTTATGTGCCTCATAGTTCACAG 59.123 40.000 0.00 0.00 41.90 3.66
5070 5515 2.099141 TGTGCCTCATAGTTCACAGC 57.901 50.000 0.00 0.00 34.87 4.40
5071 5516 1.347378 TGTGCCTCATAGTTCACAGCA 59.653 47.619 0.00 0.00 34.87 4.41
5072 5517 1.734465 GTGCCTCATAGTTCACAGCAC 59.266 52.381 0.00 0.00 41.86 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.117183 TGGATCTCATATGCATCTTAATATTGC 57.883 33.333 0.19 0.00 36.91 3.56
65 66 9.368674 CTGCATTTAATTGGTTTATGAATCACA 57.631 29.630 0.00 0.00 0.00 3.58
66 67 8.330302 GCTGCATTTAATTGGTTTATGAATCAC 58.670 33.333 0.00 0.00 0.00 3.06
67 68 8.039538 TGCTGCATTTAATTGGTTTATGAATCA 58.960 29.630 0.00 0.00 0.00 2.57
68 69 8.422973 TGCTGCATTTAATTGGTTTATGAATC 57.577 30.769 0.00 0.00 0.00 2.52
71 72 7.492020 GTGATGCTGCATTTAATTGGTTTATGA 59.508 33.333 17.36 0.00 0.00 2.15
110 116 2.449464 CCCAATGCATTGTCTCTTGGA 58.551 47.619 31.87 0.00 38.92 3.53
112 118 2.094390 CACCCCAATGCATTGTCTCTTG 60.094 50.000 31.87 19.26 36.06 3.02
154 160 6.874288 AGCTCTTAATTTGTCATCATAGGC 57.126 37.500 0.00 0.00 0.00 3.93
159 165 7.628769 TGCATTAGCTCTTAATTTGTCATCA 57.371 32.000 0.00 0.00 42.74 3.07
197 203 7.484035 TTAACTTCAAGTGAGCTTCTTCTTC 57.516 36.000 0.00 0.00 31.49 2.87
269 275 4.894784 TGTCATCTTTCTTTAACGCTCCT 58.105 39.130 0.00 0.00 0.00 3.69
272 278 6.166279 TGAGATGTCATCTTTCTTTAACGCT 58.834 36.000 16.50 0.00 40.38 5.07
311 317 4.447138 ACAGGGTGACAACCTATTTTCA 57.553 40.909 12.93 0.00 46.70 2.69
312 318 4.022329 CCAACAGGGTGACAACCTATTTTC 60.022 45.833 12.93 0.00 46.70 2.29
313 319 3.895041 CCAACAGGGTGACAACCTATTTT 59.105 43.478 12.93 2.96 46.70 1.82
316 322 1.271926 GCCAACAGGGTGACAACCTAT 60.272 52.381 12.93 0.00 46.70 2.57
317 323 0.109723 GCCAACAGGGTGACAACCTA 59.890 55.000 12.93 0.00 46.70 3.08
318 324 1.152756 GCCAACAGGGTGACAACCT 60.153 57.895 6.10 6.10 46.70 3.50
320 326 1.523758 CTAGCCAACAGGGTGACAAC 58.476 55.000 0.00 0.00 39.65 3.32
321 327 0.400213 CCTAGCCAACAGGGTGACAA 59.600 55.000 0.00 0.00 39.65 3.18
366 372 3.999285 ACTCAGGACCCGAGCCCT 61.999 66.667 4.51 0.00 33.58 5.19
374 380 2.262915 CACGAGCCACTCAGGACC 59.737 66.667 0.00 0.00 41.22 4.46
400 406 9.785982 GGAGGCATAGTTTTATAGAAGAAATCT 57.214 33.333 0.00 0.00 42.48 2.40
401 407 9.561069 TGGAGGCATAGTTTTATAGAAGAAATC 57.439 33.333 0.00 0.00 0.00 2.17
402 408 9.920946 TTGGAGGCATAGTTTTATAGAAGAAAT 57.079 29.630 0.00 0.00 0.00 2.17
403 409 9.396022 CTTGGAGGCATAGTTTTATAGAAGAAA 57.604 33.333 0.00 0.00 0.00 2.52
404 410 7.993183 CCTTGGAGGCATAGTTTTATAGAAGAA 59.007 37.037 0.00 0.00 0.00 2.52
405 411 7.420214 CCCTTGGAGGCATAGTTTTATAGAAGA 60.420 40.741 0.00 0.00 32.73 2.87
406 412 6.712547 CCCTTGGAGGCATAGTTTTATAGAAG 59.287 42.308 0.00 0.00 32.73 2.85
407 413 6.601332 CCCTTGGAGGCATAGTTTTATAGAA 58.399 40.000 0.00 0.00 32.73 2.10
408 414 6.187727 CCCTTGGAGGCATAGTTTTATAGA 57.812 41.667 0.00 0.00 32.73 1.98
422 428 1.395826 CGAGGACTAGCCCTTGGAGG 61.396 65.000 4.38 0.00 36.49 4.30
423 429 0.395862 TCGAGGACTAGCCCTTGGAG 60.396 60.000 12.13 0.00 38.11 3.86
424 430 0.261991 ATCGAGGACTAGCCCTTGGA 59.738 55.000 12.13 7.29 38.11 3.53
425 431 0.390860 CATCGAGGACTAGCCCTTGG 59.609 60.000 12.13 1.98 38.11 3.61
426 432 0.390860 CCATCGAGGACTAGCCCTTG 59.609 60.000 5.98 5.98 41.22 3.61
427 433 0.032017 ACCATCGAGGACTAGCCCTT 60.032 55.000 0.00 0.00 41.22 3.95
428 434 0.468400 GACCATCGAGGACTAGCCCT 60.468 60.000 0.00 0.00 41.22 5.19
429 435 0.468400 AGACCATCGAGGACTAGCCC 60.468 60.000 0.00 0.00 40.73 5.19
430 436 0.955905 GAGACCATCGAGGACTAGCC 59.044 60.000 0.00 0.00 42.62 3.93
431 437 1.975660 AGAGACCATCGAGGACTAGC 58.024 55.000 0.00 0.00 42.62 3.42
495 507 7.769220 AGCAAATCAACAGAGGAAATGATAAG 58.231 34.615 0.00 0.00 32.47 1.73
508 520 4.508124 GGTCCTATCGTAGCAAATCAACAG 59.492 45.833 0.00 0.00 0.00 3.16
509 521 4.161565 AGGTCCTATCGTAGCAAATCAACA 59.838 41.667 0.00 0.00 0.00 3.33
522 534 7.599245 GGATCAACATAACTTTAGGTCCTATCG 59.401 40.741 0.00 0.00 0.00 2.92
524 536 8.568617 AGGATCAACATAACTTTAGGTCCTAT 57.431 34.615 0.00 0.00 0.00 2.57
565 578 6.150318 CGCCTAAGATAATCTGAACATACGT 58.850 40.000 0.00 0.00 0.00 3.57
586 599 1.254975 ACCCCACTTATTTTGGCGCC 61.255 55.000 22.73 22.73 32.13 6.53
596 609 4.202493 GGGTCTAACAGAAAACCCCACTTA 60.202 45.833 0.00 0.00 44.75 2.24
599 612 2.511659 GGGTCTAACAGAAAACCCCAC 58.488 52.381 0.00 0.00 44.75 4.61
661 675 2.687935 TGTTGTGCAAGAGGGTTTCTTC 59.312 45.455 0.00 0.00 44.34 2.87
663 677 2.435372 TGTTGTGCAAGAGGGTTTCT 57.565 45.000 0.00 0.00 37.93 2.52
664 678 2.029918 GGATGTTGTGCAAGAGGGTTTC 60.030 50.000 0.00 0.00 0.00 2.78
665 679 1.963515 GGATGTTGTGCAAGAGGGTTT 59.036 47.619 0.00 0.00 0.00 3.27
666 680 1.133513 TGGATGTTGTGCAAGAGGGTT 60.134 47.619 0.00 0.00 0.00 4.11
667 681 0.478072 TGGATGTTGTGCAAGAGGGT 59.522 50.000 0.00 0.00 0.00 4.34
668 682 1.843368 ATGGATGTTGTGCAAGAGGG 58.157 50.000 0.00 0.00 0.00 4.30
669 683 2.094390 CCAATGGATGTTGTGCAAGAGG 60.094 50.000 0.00 0.00 0.00 3.69
670 684 2.559668 ACCAATGGATGTTGTGCAAGAG 59.440 45.455 6.16 0.00 0.00 2.85
671 685 2.557924 GACCAATGGATGTTGTGCAAGA 59.442 45.455 6.16 0.00 0.00 3.02
736 750 1.362406 GCGAGGCCTGTAAGACTTGC 61.362 60.000 12.00 0.00 39.65 4.01
915 930 2.202623 CGCGGGGAAAGAGAGACG 60.203 66.667 0.00 0.00 0.00 4.18
961 976 3.296709 GAGAAGCCGCGGAACAGGA 62.297 63.158 33.48 0.00 0.00 3.86
962 977 2.815647 GAGAAGCCGCGGAACAGG 60.816 66.667 33.48 0.01 0.00 4.00
963 978 3.181967 CGAGAAGCCGCGGAACAG 61.182 66.667 33.48 10.51 31.87 3.16
1040 1055 8.341477 AGAATCAACGATTAACACGAAGATAG 57.659 34.615 10.17 0.00 31.89 2.08
1109 1124 5.069781 CCAACAGAAAACAAGAACCCCATAA 59.930 40.000 0.00 0.00 0.00 1.90
1110 1125 4.586841 CCAACAGAAAACAAGAACCCCATA 59.413 41.667 0.00 0.00 0.00 2.74
1132 1147 1.341209 CCCAAGAACTCAAAGTTGGCC 59.659 52.381 0.00 0.00 38.80 5.36
1409 1424 7.149307 TGTCTTGAAGAATGTATCAACGTGTA 58.851 34.615 0.00 0.00 32.46 2.90
1421 1436 8.786898 TGGAAACTTATCTTGTCTTGAAGAATG 58.213 33.333 0.00 0.00 35.60 2.67
1562 1577 5.359860 ACCTTTTACCAAAACTCACTGAAGG 59.640 40.000 0.00 0.00 36.78 3.46
1660 1676 3.683802 CTCCTCCTTGTTGAGCTCAAAT 58.316 45.455 29.99 0.00 37.63 2.32
1702 1718 2.416431 GCCTTGCAAACCTAGCTCAATG 60.416 50.000 0.00 0.00 0.00 2.82
1727 1743 3.414700 CTGCGCAGAACCCGACAC 61.415 66.667 33.66 0.00 0.00 3.67
1738 1754 3.899981 ATCGAAACCTGGCTGCGCA 62.900 57.895 10.98 10.98 0.00 6.09
1741 1757 3.190878 CCATCGAAACCTGGCTGC 58.809 61.111 0.00 0.00 0.00 5.25
1866 1882 7.624549 ACCTGAATGTCATAATAACACAGAGT 58.375 34.615 0.00 0.00 0.00 3.24
1894 1910 4.040829 TCTCAAGCAACTTCTCAATCTCCA 59.959 41.667 0.00 0.00 0.00 3.86
1904 1920 2.607635 TGTCAACGTCTCAAGCAACTTC 59.392 45.455 0.00 0.00 0.00 3.01
1953 1969 6.605594 TGAACAACTCCAATTTGGTACTCTTT 59.394 34.615 14.98 3.56 39.03 2.52
2026 2042 6.334102 ACTCTGAAGTACTACTGAGGTTTG 57.666 41.667 17.48 1.24 36.75 2.93
2054 2070 5.874810 GTGACACCTGACAATATAGAAAGCA 59.125 40.000 0.00 0.00 0.00 3.91
2098 2114 1.139989 ACAGCACTCGATTGACAACG 58.860 50.000 6.99 0.00 0.00 4.10
2566 2612 6.668283 AGCGGGATACTATTGGATTACTATGT 59.332 38.462 0.00 0.00 0.00 2.29
2586 2632 9.823647 ATACATCAAATCTATAAGAATAGCGGG 57.176 33.333 0.00 0.00 35.90 6.13
2687 2766 2.887152 ACACTTGATCCCTTGTGAAAGC 59.113 45.455 10.13 0.00 34.81 3.51
2759 2838 7.914537 ATAGAAGTGAAAAGAAAAACAAGCG 57.085 32.000 0.00 0.00 0.00 4.68
2983 3397 2.223618 GGCGGTTTGTGTTTAGCTTTCA 60.224 45.455 0.00 0.00 0.00 2.69
3332 3751 6.533367 GTGGCTTGAAGTAAATGAGAGTAGAG 59.467 42.308 0.00 0.00 0.00 2.43
3437 3865 0.238289 AAATTTGCTCACTGTCGCCG 59.762 50.000 0.00 0.00 0.00 6.46
3600 4028 3.685139 ATCTCTTTCACCGTGTCATGT 57.315 42.857 0.00 0.00 0.00 3.21
3728 4156 5.705441 ACAAGTCGAGGAAAATCTGCATTTA 59.295 36.000 0.00 0.00 31.51 1.40
3775 4203 4.498241 CTTCGATGTTGTTCAGGATCTCA 58.502 43.478 0.00 0.00 0.00 3.27
3798 4226 0.541863 ACCAATCTTCCCTACCTGCG 59.458 55.000 0.00 0.00 0.00 5.18
3886 4314 1.134461 GGCAGCAGAGACATGATCAGT 60.134 52.381 0.00 0.00 0.00 3.41
3897 4325 0.610174 TGTAACCTGAGGCAGCAGAG 59.390 55.000 0.00 2.68 38.14 3.35
3898 4326 0.610174 CTGTAACCTGAGGCAGCAGA 59.390 55.000 0.00 0.00 38.14 4.26
3979 4409 0.953960 AGGTCCATTTCCGCGTGTTC 60.954 55.000 4.92 0.00 0.00 3.18
4053 4483 2.436173 CCCTACTTCTTCTCCCATGGTC 59.564 54.545 11.73 0.00 0.00 4.02
4057 4487 3.508952 TTCCCCTACTTCTTCTCCCAT 57.491 47.619 0.00 0.00 0.00 4.00
4062 4492 4.591924 TCGTTCTTTTCCCCTACTTCTTCT 59.408 41.667 0.00 0.00 0.00 2.85
4063 4493 4.891260 TCGTTCTTTTCCCCTACTTCTTC 58.109 43.478 0.00 0.00 0.00 2.87
4075 4505 6.399354 GCATGATGCTTCTTTTCGTTCTTTTC 60.399 38.462 10.72 0.00 40.96 2.29
4076 4506 5.403466 GCATGATGCTTCTTTTCGTTCTTTT 59.597 36.000 10.72 0.00 40.96 2.27
4077 4507 4.919754 GCATGATGCTTCTTTTCGTTCTTT 59.080 37.500 10.72 0.00 40.96 2.52
4078 4508 4.479619 GCATGATGCTTCTTTTCGTTCTT 58.520 39.130 10.72 0.00 40.96 2.52
4079 4509 4.088823 GCATGATGCTTCTTTTCGTTCT 57.911 40.909 10.72 0.00 40.96 3.01
4151 4581 6.073385 TCGTTGGCGTATATACACAACAAAAA 60.073 34.615 30.03 18.77 40.61 1.94
4157 4587 4.107363 TGTCGTTGGCGTATATACACAA 57.893 40.909 13.22 13.20 39.49 3.33
4166 4596 2.223782 GGTACCATATGTCGTTGGCGTA 60.224 50.000 7.15 0.00 36.41 4.42
4167 4597 1.472026 GGTACCATATGTCGTTGGCGT 60.472 52.381 7.15 0.00 36.41 5.68
4170 4600 1.409790 TCCGGTACCATATGTCGTTGG 59.590 52.381 13.54 0.49 39.02 3.77
4174 4604 0.038526 GGCTCCGGTACCATATGTCG 60.039 60.000 13.54 0.00 0.00 4.35
4176 4606 0.468585 TCGGCTCCGGTACCATATGT 60.469 55.000 13.54 0.00 40.25 2.29
4185 4615 1.817209 GAGAATCTTCGGCTCCGGT 59.183 57.895 8.59 0.00 40.25 5.28
4197 4627 8.619546 CACCTCCAAGAAAATAATCAGAGAATC 58.380 37.037 0.00 0.00 0.00 2.52
4198 4628 8.112183 ACACCTCCAAGAAAATAATCAGAGAAT 58.888 33.333 0.00 0.00 0.00 2.40
4210 4646 3.963129 AGTTCACACACCTCCAAGAAAA 58.037 40.909 0.00 0.00 0.00 2.29
4211 4647 3.644966 AGTTCACACACCTCCAAGAAA 57.355 42.857 0.00 0.00 0.00 2.52
4214 4650 3.016736 ACAAAGTTCACACACCTCCAAG 58.983 45.455 0.00 0.00 0.00 3.61
4219 4655 5.659440 AATCAAACAAAGTTCACACACCT 57.341 34.783 0.00 0.00 0.00 4.00
4222 4658 6.146837 CCACAAAATCAAACAAAGTTCACACA 59.853 34.615 0.00 0.00 0.00 3.72
4237 4673 6.392625 TTTGTTATCCGAACCACAAAATCA 57.607 33.333 0.00 0.00 36.44 2.57
4252 4688 9.745880 ATGATGATCAAGCTGAATTTTGTTATC 57.254 29.630 0.00 0.00 0.00 1.75
4273 4709 2.543012 GCGGAGAGACAATCACATGATG 59.457 50.000 0.00 0.00 34.49 3.07
4274 4710 2.169144 TGCGGAGAGACAATCACATGAT 59.831 45.455 0.00 0.00 36.07 2.45
4275 4711 1.550072 TGCGGAGAGACAATCACATGA 59.450 47.619 0.00 0.00 0.00 3.07
4276 4712 2.014335 TGCGGAGAGACAATCACATG 57.986 50.000 0.00 0.00 0.00 3.21
4306 4742 2.098614 TGCTGCCACAAAAGTCAGAAA 58.901 42.857 0.00 0.00 0.00 2.52
4308 4744 1.761449 TTGCTGCCACAAAAGTCAGA 58.239 45.000 0.00 0.00 0.00 3.27
4310 4746 2.030371 TCATTGCTGCCACAAAAGTCA 58.970 42.857 0.00 0.00 32.27 3.41
4311 4747 2.035066 ACTCATTGCTGCCACAAAAGTC 59.965 45.455 0.00 0.00 32.27 3.01
4312 4748 2.034124 ACTCATTGCTGCCACAAAAGT 58.966 42.857 0.00 0.00 32.27 2.66
4323 4759 5.477984 ACACAAATAATGGACACTCATTGCT 59.522 36.000 0.00 0.00 37.82 3.91
4324 4760 5.713025 ACACAAATAATGGACACTCATTGC 58.287 37.500 0.00 0.00 37.82 3.56
4369 4805 6.816026 CCCTGAGGATCGTGATCACATCAC 62.816 54.167 24.93 19.82 45.50 3.06
4370 4806 2.363359 CCTGAGGATCGTGATCACATCA 59.637 50.000 24.93 17.16 39.54 3.07
4371 4807 2.288702 CCCTGAGGATCGTGATCACATC 60.289 54.545 24.93 22.48 39.54 3.06
4372 4808 1.690893 CCCTGAGGATCGTGATCACAT 59.309 52.381 24.93 16.62 39.54 3.21
4373 4809 1.114627 CCCTGAGGATCGTGATCACA 58.885 55.000 24.93 12.75 39.54 3.58
4374 4810 0.249657 GCCCTGAGGATCGTGATCAC 60.250 60.000 16.21 16.21 39.54 3.06
4375 4811 1.402896 GGCCCTGAGGATCGTGATCA 61.403 60.000 11.66 0.00 39.54 2.92
4376 4812 1.369321 GGCCCTGAGGATCGTGATC 59.631 63.158 0.00 1.11 38.61 2.92
4377 4813 2.502492 CGGCCCTGAGGATCGTGAT 61.502 63.158 0.00 0.00 38.61 3.06
4378 4814 3.147595 CGGCCCTGAGGATCGTGA 61.148 66.667 0.00 0.00 38.61 4.35
4379 4815 3.432051 GACGGCCCTGAGGATCGTG 62.432 68.421 20.05 0.00 42.16 4.35
4380 4816 3.148279 GACGGCCCTGAGGATCGT 61.148 66.667 16.36 16.36 43.88 3.73
4381 4817 2.835431 AGACGGCCCTGAGGATCG 60.835 66.667 0.00 5.94 38.61 3.69
4382 4818 2.503382 GGAGACGGCCCTGAGGATC 61.503 68.421 0.00 0.00 33.47 3.36
4383 4819 2.444895 GGAGACGGCCCTGAGGAT 60.445 66.667 0.00 0.00 33.47 3.24
4384 4820 3.965026 CTGGAGACGGCCCTGAGGA 62.965 68.421 0.00 0.00 33.47 3.71
4385 4821 3.465403 CTGGAGACGGCCCTGAGG 61.465 72.222 0.00 0.00 0.00 3.86
4386 4822 3.465403 CCTGGAGACGGCCCTGAG 61.465 72.222 0.00 0.00 34.42 3.35
4387 4823 2.822643 ATTCCTGGAGACGGCCCTGA 62.823 60.000 0.00 0.00 34.42 3.86
4512 4948 3.889196 TGAAGTGGTGCACGAAATAAC 57.111 42.857 11.45 2.28 39.64 1.89
4614 5055 6.942005 TCATAAATAATGGATGGATGACGCTT 59.058 34.615 0.00 0.00 36.15 4.68
4692 5137 5.820947 TCCCGCTCCAAAAATCTTAAGATAC 59.179 40.000 18.23 1.20 33.73 2.24
4730 5175 5.051153 GCCTAGGTAAGCTAGTTTGCTAAG 58.949 45.833 11.31 5.34 43.24 2.18
4731 5176 4.468510 TGCCTAGGTAAGCTAGTTTGCTAA 59.531 41.667 11.31 0.00 43.24 3.09
4732 5177 4.028131 TGCCTAGGTAAGCTAGTTTGCTA 58.972 43.478 11.31 0.00 43.24 3.49
4733 5178 2.838202 TGCCTAGGTAAGCTAGTTTGCT 59.162 45.455 11.31 0.00 46.40 3.91
4786 5231 9.655769 CATACATGTGCATCAGTTTATTAGTTC 57.344 33.333 9.11 0.00 0.00 3.01
4789 5234 7.040892 AGGCATACATGTGCATCAGTTTATTAG 60.041 37.037 9.11 0.00 46.81 1.73
4811 5256 0.537143 CAGGTTACAGGTTGCAGGCA 60.537 55.000 0.00 0.00 0.00 4.75
4818 5263 2.851195 CACTTCAGCAGGTTACAGGTT 58.149 47.619 0.00 0.00 0.00 3.50
4839 5284 6.146021 AGCAATTTTTCTTTTCGGCAATACTG 59.854 34.615 0.00 0.00 0.00 2.74
4879 5324 3.068691 TTCAGGCCGCTAGCGACT 61.069 61.111 37.39 29.23 45.17 4.18
4920 5365 3.390175 TTGTTCTCCACCCCTCAAAAA 57.610 42.857 0.00 0.00 0.00 1.94
4921 5366 3.611025 ATTGTTCTCCACCCCTCAAAA 57.389 42.857 0.00 0.00 0.00 2.44
4922 5367 3.611025 AATTGTTCTCCACCCCTCAAA 57.389 42.857 0.00 0.00 0.00 2.69
4923 5368 3.611025 AAATTGTTCTCCACCCCTCAA 57.389 42.857 0.00 0.00 0.00 3.02
4924 5369 4.946160 ATAAATTGTTCTCCACCCCTCA 57.054 40.909 0.00 0.00 0.00 3.86
4925 5370 5.261216 TGAATAAATTGTTCTCCACCCCTC 58.739 41.667 4.22 0.00 0.00 4.30
4926 5371 5.269554 TGAATAAATTGTTCTCCACCCCT 57.730 39.130 4.22 0.00 0.00 4.79
4927 5372 5.656416 TGATGAATAAATTGTTCTCCACCCC 59.344 40.000 4.22 0.00 0.00 4.95
4928 5373 6.405842 GGTGATGAATAAATTGTTCTCCACCC 60.406 42.308 22.42 12.78 39.70 4.61
4929 5374 6.152661 TGGTGATGAATAAATTGTTCTCCACC 59.847 38.462 24.26 24.26 42.33 4.61
4930 5375 7.156876 TGGTGATGAATAAATTGTTCTCCAC 57.843 36.000 14.11 14.11 32.85 4.02
4931 5376 7.773489 TTGGTGATGAATAAATTGTTCTCCA 57.227 32.000 4.22 5.12 0.00 3.86
4932 5377 8.306761 ACTTTGGTGATGAATAAATTGTTCTCC 58.693 33.333 4.22 3.03 0.00 3.71
4933 5378 9.346725 GACTTTGGTGATGAATAAATTGTTCTC 57.653 33.333 4.22 0.98 0.00 2.87
4934 5379 8.306761 GGACTTTGGTGATGAATAAATTGTTCT 58.693 33.333 4.22 0.00 0.00 3.01
4935 5380 8.087750 TGGACTTTGGTGATGAATAAATTGTTC 58.912 33.333 0.00 0.00 0.00 3.18
4936 5381 7.872483 GTGGACTTTGGTGATGAATAAATTGTT 59.128 33.333 0.00 0.00 0.00 2.83
4937 5382 7.015098 TGTGGACTTTGGTGATGAATAAATTGT 59.985 33.333 0.00 0.00 0.00 2.71
4938 5383 7.329226 GTGTGGACTTTGGTGATGAATAAATTG 59.671 37.037 0.00 0.00 0.00 2.32
4939 5384 7.378181 GTGTGGACTTTGGTGATGAATAAATT 58.622 34.615 0.00 0.00 0.00 1.82
4940 5385 6.349280 CGTGTGGACTTTGGTGATGAATAAAT 60.349 38.462 0.00 0.00 0.00 1.40
4941 5386 5.049060 CGTGTGGACTTTGGTGATGAATAAA 60.049 40.000 0.00 0.00 0.00 1.40
4942 5387 4.454161 CGTGTGGACTTTGGTGATGAATAA 59.546 41.667 0.00 0.00 0.00 1.40
4943 5388 4.000325 CGTGTGGACTTTGGTGATGAATA 59.000 43.478 0.00 0.00 0.00 1.75
4944 5389 2.813754 CGTGTGGACTTTGGTGATGAAT 59.186 45.455 0.00 0.00 0.00 2.57
4945 5390 2.158885 TCGTGTGGACTTTGGTGATGAA 60.159 45.455 0.00 0.00 0.00 2.57
4946 5391 1.414550 TCGTGTGGACTTTGGTGATGA 59.585 47.619 0.00 0.00 0.00 2.92
4947 5392 1.800586 CTCGTGTGGACTTTGGTGATG 59.199 52.381 0.00 0.00 0.00 3.07
4948 5393 1.270839 CCTCGTGTGGACTTTGGTGAT 60.271 52.381 0.00 0.00 0.00 3.06
4949 5394 0.105964 CCTCGTGTGGACTTTGGTGA 59.894 55.000 0.00 0.00 0.00 4.02
4950 5395 0.179056 ACCTCGTGTGGACTTTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
4951 5396 0.179056 CACCTCGTGTGGACTTTGGT 60.179 55.000 0.00 0.00 41.52 3.67
4952 5397 2.616969 CACCTCGTGTGGACTTTGG 58.383 57.895 0.00 0.00 41.52 3.28
4960 5405 1.548719 TCTTGTATCCCACCTCGTGTG 59.451 52.381 1.59 1.59 45.01 3.82
4961 5406 1.933021 TCTTGTATCCCACCTCGTGT 58.067 50.000 0.00 0.00 0.00 4.49
4962 5407 2.418746 CCTTCTTGTATCCCACCTCGTG 60.419 54.545 0.00 0.00 0.00 4.35
4963 5408 1.831736 CCTTCTTGTATCCCACCTCGT 59.168 52.381 0.00 0.00 0.00 4.18
4964 5409 1.139058 CCCTTCTTGTATCCCACCTCG 59.861 57.143 0.00 0.00 0.00 4.63
4965 5410 2.170817 GACCCTTCTTGTATCCCACCTC 59.829 54.545 0.00 0.00 0.00 3.85
4966 5411 2.197465 GACCCTTCTTGTATCCCACCT 58.803 52.381 0.00 0.00 0.00 4.00
4967 5412 1.913419 TGACCCTTCTTGTATCCCACC 59.087 52.381 0.00 0.00 0.00 4.61
4968 5413 3.545703 CATGACCCTTCTTGTATCCCAC 58.454 50.000 0.00 0.00 0.00 4.61
4969 5414 2.509548 CCATGACCCTTCTTGTATCCCA 59.490 50.000 0.00 0.00 0.00 4.37
4970 5415 2.158608 CCCATGACCCTTCTTGTATCCC 60.159 54.545 0.00 0.00 0.00 3.85
4971 5416 2.158608 CCCCATGACCCTTCTTGTATCC 60.159 54.545 0.00 0.00 0.00 2.59
4972 5417 2.158608 CCCCCATGACCCTTCTTGTATC 60.159 54.545 0.00 0.00 0.00 2.24
4973 5418 1.852965 CCCCCATGACCCTTCTTGTAT 59.147 52.381 0.00 0.00 0.00 2.29
4974 5419 1.295020 CCCCCATGACCCTTCTTGTA 58.705 55.000 0.00 0.00 0.00 2.41
4975 5420 0.776080 ACCCCCATGACCCTTCTTGT 60.776 55.000 0.00 0.00 0.00 3.16
4976 5421 0.409484 AACCCCCATGACCCTTCTTG 59.591 55.000 0.00 0.00 0.00 3.02
4977 5422 0.409484 CAACCCCCATGACCCTTCTT 59.591 55.000 0.00 0.00 0.00 2.52
4978 5423 2.087248 CAACCCCCATGACCCTTCT 58.913 57.895 0.00 0.00 0.00 2.85
4979 5424 1.682344 GCAACCCCCATGACCCTTC 60.682 63.158 0.00 0.00 0.00 3.46
4980 5425 2.445155 GCAACCCCCATGACCCTT 59.555 61.111 0.00 0.00 0.00 3.95
4981 5426 3.672503 GGCAACCCCCATGACCCT 61.673 66.667 0.00 0.00 0.00 4.34
4982 5427 3.537961 TTGGCAACCCCCATGACCC 62.538 63.158 0.00 0.00 34.21 4.46
4983 5428 1.535202 TTTGGCAACCCCCATGACC 60.535 57.895 0.00 0.00 34.21 4.02
4984 5429 1.671166 GTTTGGCAACCCCCATGAC 59.329 57.895 0.00 0.00 34.21 3.06
4985 5430 1.535202 GGTTTGGCAACCCCCATGA 60.535 57.895 1.72 0.00 46.38 3.07
4986 5431 3.067985 GGTTTGGCAACCCCCATG 58.932 61.111 1.72 0.00 46.38 3.66
4993 5438 3.784845 CCACGTATGGTTTGGCAAC 57.215 52.632 0.00 0.00 41.64 4.17
5012 5457 3.853698 TTTTTCAGGGTCCGGGGCG 62.854 63.158 0.00 0.00 0.00 6.13
5013 5458 1.977009 CTTTTTCAGGGTCCGGGGC 60.977 63.158 0.00 0.00 0.00 5.80
5014 5459 0.322546 CTCTTTTTCAGGGTCCGGGG 60.323 60.000 0.00 0.00 0.00 5.73
5015 5460 0.960861 GCTCTTTTTCAGGGTCCGGG 60.961 60.000 0.00 0.00 0.00 5.73
5016 5461 0.250727 TGCTCTTTTTCAGGGTCCGG 60.251 55.000 0.00 0.00 0.00 5.14
5017 5462 1.604604 TTGCTCTTTTTCAGGGTCCG 58.395 50.000 0.00 0.00 0.00 4.79
5018 5463 4.607293 AATTTGCTCTTTTTCAGGGTCC 57.393 40.909 0.00 0.00 0.00 4.46
5019 5464 5.635280 GCTAAATTTGCTCTTTTTCAGGGTC 59.365 40.000 0.00 0.00 0.00 4.46
5020 5465 5.305386 AGCTAAATTTGCTCTTTTTCAGGGT 59.695 36.000 0.00 0.00 35.67 4.34
5021 5466 5.787380 AGCTAAATTTGCTCTTTTTCAGGG 58.213 37.500 0.00 0.00 35.67 4.45
5022 5467 7.597386 ACTAGCTAAATTTGCTCTTTTTCAGG 58.403 34.615 15.39 3.58 41.46 3.86
5023 5468 9.468532 AAACTAGCTAAATTTGCTCTTTTTCAG 57.531 29.630 15.39 9.90 41.46 3.02
5028 5473 9.846248 CACATAAACTAGCTAAATTTGCTCTTT 57.154 29.630 15.39 15.13 41.46 2.52
5029 5474 7.970614 GCACATAAACTAGCTAAATTTGCTCTT 59.029 33.333 15.39 11.26 41.46 2.85
5030 5475 7.415653 GGCACATAAACTAGCTAAATTTGCTCT 60.416 37.037 15.39 6.26 41.46 4.09
5031 5476 6.693113 GGCACATAAACTAGCTAAATTTGCTC 59.307 38.462 15.39 0.00 41.46 4.26
5032 5477 6.378280 AGGCACATAAACTAGCTAAATTTGCT 59.622 34.615 15.97 15.97 43.79 3.91
5033 5478 6.564328 AGGCACATAAACTAGCTAAATTTGC 58.436 36.000 11.27 2.83 0.00 3.68
5034 5479 7.761409 TGAGGCACATAAACTAGCTAAATTTG 58.239 34.615 11.27 2.15 0.00 2.32
5035 5480 7.938140 TGAGGCACATAAACTAGCTAAATTT 57.062 32.000 0.00 1.47 0.00 1.82
5036 5481 9.277783 CTATGAGGCACATAAACTAGCTAAATT 57.722 33.333 6.12 0.00 40.39 1.82
5037 5482 8.432805 ACTATGAGGCACATAAACTAGCTAAAT 58.567 33.333 6.12 0.00 40.39 1.40
5038 5483 7.792032 ACTATGAGGCACATAAACTAGCTAAA 58.208 34.615 6.12 0.00 40.39 1.85
5039 5484 7.361457 ACTATGAGGCACATAAACTAGCTAA 57.639 36.000 6.12 0.00 40.39 3.09
5040 5485 6.978674 ACTATGAGGCACATAAACTAGCTA 57.021 37.500 6.12 0.00 40.39 3.32
5041 5486 5.878406 ACTATGAGGCACATAAACTAGCT 57.122 39.130 6.12 0.00 40.39 3.32
5042 5487 6.018669 GTGAACTATGAGGCACATAAACTAGC 60.019 42.308 6.12 0.00 40.39 3.42
5043 5488 7.041721 TGTGAACTATGAGGCACATAAACTAG 58.958 38.462 6.12 0.00 40.39 2.57
5044 5489 6.941857 TGTGAACTATGAGGCACATAAACTA 58.058 36.000 6.12 0.00 40.39 2.24
5045 5490 5.804639 TGTGAACTATGAGGCACATAAACT 58.195 37.500 6.12 0.00 40.39 2.66
5046 5491 5.447818 GCTGTGAACTATGAGGCACATAAAC 60.448 44.000 6.12 3.78 40.39 2.01
5047 5492 4.635765 GCTGTGAACTATGAGGCACATAAA 59.364 41.667 6.12 0.00 40.39 1.40
5048 5493 4.191544 GCTGTGAACTATGAGGCACATAA 58.808 43.478 6.12 0.00 40.39 1.90
5049 5494 3.197549 TGCTGTGAACTATGAGGCACATA 59.802 43.478 4.57 4.57 40.12 2.29
5050 5495 2.026915 TGCTGTGAACTATGAGGCACAT 60.027 45.455 2.34 2.34 40.12 3.21
5051 5496 1.347378 TGCTGTGAACTATGAGGCACA 59.653 47.619 0.00 0.00 38.78 4.57
5052 5497 1.734465 GTGCTGTGAACTATGAGGCAC 59.266 52.381 0.00 0.00 40.91 5.01
5053 5498 2.099141 GTGCTGTGAACTATGAGGCA 57.901 50.000 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.