Multiple sequence alignment - TraesCS5B01G101700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G101700 chr5B 100.000 6726 0 0 1 6726 134922140 134915415 0.000000e+00 12421
1 TraesCS5B01G101700 chr5B 95.420 131 6 0 2913 3043 703263407 703263537 6.840000e-50 209
2 TraesCS5B01G101700 chr5B 92.308 143 8 3 2901 3043 456281474 456281613 4.110000e-47 200
3 TraesCS5B01G101700 chr5D 93.658 2302 99 12 4241 6520 122198562 122196286 0.000000e+00 3398
4 TraesCS5B01G101700 chr5D 94.027 2210 100 16 711 2914 122201989 122199806 0.000000e+00 3321
5 TraesCS5B01G101700 chr5D 94.103 1204 60 7 3038 4233 122199807 122198607 0.000000e+00 1820
6 TraesCS5B01G101700 chr5D 95.030 664 28 2 1 664 122202643 122201985 0.000000e+00 1038
7 TraesCS5B01G101700 chr5D 93.171 205 12 2 6522 6726 122196203 122196001 3.940000e-77 300
8 TraesCS5B01G101700 chr5D 95.506 89 3 1 4288 4375 498655283 498655371 2.530000e-29 141
9 TraesCS5B01G101700 chr5D 95.402 87 3 1 4288 4374 122198430 122198515 3.270000e-28 137
10 TraesCS5B01G101700 chr5A 93.310 2302 111 13 4241 6520 134086106 134083826 0.000000e+00 3358
11 TraesCS5B01G101700 chr5A 93.032 2210 109 18 711 2914 134089517 134087347 0.000000e+00 3186
12 TraesCS5B01G101700 chr5A 94.338 1201 60 6 3038 4233 134087348 134086151 0.000000e+00 1834
13 TraesCS5B01G101700 chr5A 93.675 664 32 3 1 664 134090166 134089513 0.000000e+00 985
14 TraesCS5B01G101700 chr3B 96.875 128 4 0 2912 3039 224752323 224752196 1.470000e-51 215
15 TraesCS5B01G101700 chr3B 95.385 130 6 0 2913 3042 214030288 214030159 2.460000e-49 207
16 TraesCS5B01G101700 chr7B 93.478 138 7 2 2913 3048 152464771 152464908 3.180000e-48 204
17 TraesCS5B01G101700 chr6D 94.697 132 6 1 2912 3042 9360149 9360018 3.180000e-48 204
18 TraesCS5B01G101700 chr2B 94.656 131 7 0 2913 3043 158360459 158360589 3.180000e-48 204
19 TraesCS5B01G101700 chr4A 94.656 131 6 1 2913 3042 667273765 667273895 1.140000e-47 202
20 TraesCS5B01G101700 chr4A 94.565 92 5 0 4287 4378 647209303 647209394 7.030000e-30 143
21 TraesCS5B01G101700 chr6A 94.574 129 7 0 2913 3041 555243250 555243378 4.110000e-47 200
22 TraesCS5B01G101700 chr7A 95.652 92 4 0 4287 4378 40538245 40538154 1.510000e-31 148
23 TraesCS5B01G101700 chr7A 96.429 84 3 0 4289 4372 495167079 495166996 9.100000e-29 139
24 TraesCS5B01G101700 chr7A 83.750 80 11 2 6239 6317 529452002 529451924 2.600000e-09 75
25 TraesCS5B01G101700 chr7D 95.652 92 3 1 4287 4378 41146648 41146558 5.440000e-31 147
26 TraesCS5B01G101700 chr1A 96.471 85 3 0 4289 4373 517102736 517102820 2.530000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G101700 chr5B 134915415 134922140 6725 True 12421.00 12421 100.00000 1 6726 1 chr5B.!!$R1 6725
1 TraesCS5B01G101700 chr5D 122196001 122202643 6642 True 1975.40 3398 93.99780 1 6726 5 chr5D.!!$R1 6725
2 TraesCS5B01G101700 chr5A 134083826 134090166 6340 True 2340.75 3358 93.58875 1 6520 4 chr5A.!!$R1 6519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.445436 CGCAATGTGAGAAGCTGGAC 59.555 55.000 0.00 0.0 0.00 4.02 F
1014 1015 0.609662 ACAAAATGGTCTGCATGGCC 59.390 50.000 0.00 0.0 41.87 5.36 F
1855 1859 2.210116 TCAGTTTGTTTCTCGGCTCAC 58.790 47.619 0.00 0.0 0.00 3.51 F
2923 2930 0.330604 TACACTGCTACTCCCTCCGT 59.669 55.000 0.00 0.0 0.00 4.69 F
3788 3796 0.401250 ACCATTTTTGGGGGCCAAGT 60.401 50.000 4.39 0.0 44.84 3.16 F
4551 4603 0.108138 ACTTGCGCCTGTGTCTATCC 60.108 55.000 4.18 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 1136 0.464452 CTCTGGTGGATACGGGGAAC 59.536 60.000 0.00 0.00 42.51 3.62 R
2913 2920 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85 R
3499 3507 0.389948 AAGAGTCGAACACATCCGCC 60.390 55.000 0.00 0.00 0.00 6.13 R
4549 4601 1.001887 GGTTATTGGTGCCACCGGA 60.002 57.895 9.46 0.22 42.58 5.14 R
5262 5314 0.309302 TTCGACACGGCCAAATTGTG 59.691 50.000 2.24 4.66 39.47 3.33 R
6081 6142 0.751643 CATTACCAGGGCCGGAAAGG 60.752 60.000 19.10 2.88 44.97 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 1.946768 TGCCTGTTAGTTGTGCACTTC 59.053 47.619 19.41 10.84 36.88 3.01
218 219 1.780309 TGGTGGGGAGATCAAACTTGT 59.220 47.619 0.00 0.00 0.00 3.16
231 232 2.491693 CAAACTTGTATTCGGGGCACAT 59.508 45.455 0.00 0.00 0.00 3.21
275 276 0.445436 CGCAATGTGAGAAGCTGGAC 59.555 55.000 0.00 0.00 0.00 4.02
301 302 6.601613 GGGGAATGTCAATGTAACATCAGTTA 59.398 38.462 0.00 0.00 36.35 2.24
373 374 3.149196 GAGTGTGAAAAGATTGAGGCCA 58.851 45.455 5.01 0.00 0.00 5.36
375 376 2.622942 GTGTGAAAAGATTGAGGCCACA 59.377 45.455 5.01 0.25 0.00 4.17
393 394 4.621274 GCCACACATGCAAATGGAACTTAT 60.621 41.667 11.80 0.00 33.80 1.73
468 469 7.615582 ACTATATTCATAATGTTCATGGCGG 57.384 36.000 0.00 0.00 0.00 6.13
479 480 3.704566 TGTTCATGGCGGTACTTAGAGAT 59.295 43.478 0.00 0.00 0.00 2.75
510 511 1.661112 GAATTGTCAGCGTAGGTCTGC 59.339 52.381 0.00 0.00 33.74 4.26
530 531 7.116233 GGTCTGCGATTATTTTTGTTCATTGTT 59.884 33.333 0.00 0.00 0.00 2.83
541 542 4.572985 TGTTCATTGTTTCAGCCTTGAG 57.427 40.909 0.00 0.00 34.15 3.02
617 618 2.497138 TGTGGACATCAGCAACTTCTG 58.503 47.619 0.00 0.00 35.46 3.02
620 621 2.079925 GGACATCAGCAACTTCTGGTC 58.920 52.381 0.00 0.00 34.91 4.02
632 633 4.937201 ACTTCTGGTCCCAAATGTTTTC 57.063 40.909 0.00 0.00 0.00 2.29
664 665 4.371786 TCTAGTTATGAAATGCGAGCTGG 58.628 43.478 0.00 0.00 0.00 4.85
666 667 3.201290 AGTTATGAAATGCGAGCTGGAG 58.799 45.455 0.00 0.00 0.00 3.86
668 669 2.988010 ATGAAATGCGAGCTGGAGTA 57.012 45.000 0.00 0.00 0.00 2.59
669 670 2.988010 TGAAATGCGAGCTGGAGTAT 57.012 45.000 0.00 0.00 0.00 2.12
670 671 2.826428 TGAAATGCGAGCTGGAGTATC 58.174 47.619 0.00 0.00 0.00 2.24
671 672 2.168313 TGAAATGCGAGCTGGAGTATCA 59.832 45.455 0.00 0.00 36.25 2.15
672 673 2.988010 AATGCGAGCTGGAGTATCAA 57.012 45.000 0.00 0.00 36.25 2.57
673 674 2.522836 ATGCGAGCTGGAGTATCAAG 57.477 50.000 0.00 0.00 39.94 3.02
674 675 1.474330 TGCGAGCTGGAGTATCAAGA 58.526 50.000 0.00 0.00 38.98 3.02
675 676 1.135139 TGCGAGCTGGAGTATCAAGAC 59.865 52.381 0.00 0.00 38.98 3.01
676 677 1.407258 GCGAGCTGGAGTATCAAGACT 59.593 52.381 0.00 0.00 38.98 3.24
677 678 2.797792 GCGAGCTGGAGTATCAAGACTG 60.798 54.545 0.00 0.00 38.98 3.51
678 679 2.685388 CGAGCTGGAGTATCAAGACTGA 59.315 50.000 0.00 0.00 38.98 3.41
679 680 3.488384 CGAGCTGGAGTATCAAGACTGAC 60.488 52.174 0.00 0.00 38.98 3.51
680 681 3.435275 AGCTGGAGTATCAAGACTGACA 58.565 45.455 0.00 0.00 38.98 3.58
681 682 3.194542 AGCTGGAGTATCAAGACTGACAC 59.805 47.826 0.00 0.00 38.98 3.67
682 683 3.056536 GCTGGAGTATCAAGACTGACACA 60.057 47.826 0.00 0.00 38.98 3.72
683 684 4.382470 GCTGGAGTATCAAGACTGACACAT 60.382 45.833 0.00 0.00 38.98 3.21
684 685 5.728471 CTGGAGTATCAAGACTGACACATT 58.272 41.667 0.00 0.00 38.98 2.71
685 686 5.482006 TGGAGTATCAAGACTGACACATTG 58.518 41.667 0.00 0.00 30.90 2.82
686 687 4.872691 GGAGTATCAAGACTGACACATTGG 59.127 45.833 0.00 0.00 30.90 3.16
687 688 4.256920 AGTATCAAGACTGACACATTGGC 58.743 43.478 0.00 0.00 30.90 4.52
688 689 2.936919 TCAAGACTGACACATTGGCT 57.063 45.000 0.00 0.00 0.00 4.75
689 690 4.558226 ATCAAGACTGACACATTGGCTA 57.442 40.909 0.00 0.00 33.30 3.93
690 691 4.350368 TCAAGACTGACACATTGGCTAA 57.650 40.909 0.00 0.00 0.00 3.09
691 692 4.318332 TCAAGACTGACACATTGGCTAAG 58.682 43.478 0.00 0.00 0.00 2.18
692 693 3.340814 AGACTGACACATTGGCTAAGG 57.659 47.619 0.00 0.00 0.00 2.69
693 694 2.026822 AGACTGACACATTGGCTAAGGG 60.027 50.000 0.00 0.00 0.00 3.95
694 695 1.098050 CTGACACATTGGCTAAGGGC 58.902 55.000 0.00 0.00 40.90 5.19
695 696 0.698238 TGACACATTGGCTAAGGGCT 59.302 50.000 0.00 0.00 41.46 5.19
696 697 1.340017 TGACACATTGGCTAAGGGCTC 60.340 52.381 0.00 0.00 41.46 4.70
697 698 0.698238 ACACATTGGCTAAGGGCTCA 59.302 50.000 0.00 0.00 41.46 4.26
698 699 1.285962 ACACATTGGCTAAGGGCTCAT 59.714 47.619 0.00 0.00 41.46 2.90
699 700 1.679680 CACATTGGCTAAGGGCTCATG 59.320 52.381 0.00 0.00 41.46 3.07
700 701 1.285962 ACATTGGCTAAGGGCTCATGT 59.714 47.619 0.00 0.00 41.46 3.21
701 702 2.291800 ACATTGGCTAAGGGCTCATGTT 60.292 45.455 0.00 0.00 38.46 2.71
702 703 1.838112 TTGGCTAAGGGCTCATGTTG 58.162 50.000 0.00 0.00 41.46 3.33
703 704 0.698238 TGGCTAAGGGCTCATGTTGT 59.302 50.000 0.00 0.00 41.46 3.32
704 705 1.912731 TGGCTAAGGGCTCATGTTGTA 59.087 47.619 0.00 0.00 41.46 2.41
705 706 2.509548 TGGCTAAGGGCTCATGTTGTAT 59.490 45.455 0.00 0.00 41.46 2.29
706 707 3.714280 TGGCTAAGGGCTCATGTTGTATA 59.286 43.478 0.00 0.00 41.46 1.47
707 708 4.350816 TGGCTAAGGGCTCATGTTGTATAT 59.649 41.667 0.00 0.00 41.46 0.86
708 709 4.697352 GGCTAAGGGCTCATGTTGTATATG 59.303 45.833 0.00 0.00 41.46 1.78
709 710 5.308825 GCTAAGGGCTCATGTTGTATATGT 58.691 41.667 0.00 0.00 38.06 2.29
710 711 6.464222 GCTAAGGGCTCATGTTGTATATGTA 58.536 40.000 0.00 0.00 38.06 2.29
711 712 6.591834 GCTAAGGGCTCATGTTGTATATGTAG 59.408 42.308 0.00 0.00 38.06 2.74
712 713 4.899502 AGGGCTCATGTTGTATATGTAGC 58.100 43.478 0.00 0.00 32.70 3.58
713 714 4.594920 AGGGCTCATGTTGTATATGTAGCT 59.405 41.667 0.00 0.00 33.35 3.32
714 715 4.692625 GGGCTCATGTTGTATATGTAGCTG 59.307 45.833 0.00 0.00 33.35 4.24
715 716 4.153117 GGCTCATGTTGTATATGTAGCTGC 59.847 45.833 0.00 0.00 33.35 5.25
716 717 4.751600 GCTCATGTTGTATATGTAGCTGCA 59.248 41.667 7.05 7.05 31.75 4.41
717 718 5.333645 GCTCATGTTGTATATGTAGCTGCAC 60.334 44.000 6.66 0.00 31.75 4.57
718 719 5.917462 TCATGTTGTATATGTAGCTGCACT 58.083 37.500 6.66 0.00 0.00 4.40
719 720 6.348498 TCATGTTGTATATGTAGCTGCACTT 58.652 36.000 6.66 0.00 0.00 3.16
720 721 6.258507 TCATGTTGTATATGTAGCTGCACTTG 59.741 38.462 6.66 1.57 0.00 3.16
738 739 5.277442 GCACTTGTGTTGAAATTTCCCATTG 60.277 40.000 15.48 9.05 0.00 2.82
747 748 8.213679 TGTTGAAATTTCCCATTGGATTTGTTA 58.786 29.630 15.48 0.00 41.40 2.41
783 784 1.141185 TGGGACACCACAATACCACA 58.859 50.000 0.00 0.00 43.37 4.17
788 789 3.307833 GGACACCACAATACCACATACCA 60.308 47.826 0.00 0.00 0.00 3.25
795 796 4.391830 CACAATACCACATACCAGTGACAC 59.608 45.833 0.00 0.00 42.05 3.67
800 801 3.327757 ACCACATACCAGTGACACATCTT 59.672 43.478 8.59 0.00 42.05 2.40
807 808 3.079578 CCAGTGACACATCTTTGCATCT 58.920 45.455 8.59 0.00 0.00 2.90
815 816 6.152932 ACACATCTTTGCATCTGTTTTCTT 57.847 33.333 0.00 0.00 0.00 2.52
828 829 6.179906 TCTGTTTTCTTCATGGAGAGACTT 57.820 37.500 16.30 0.00 0.00 3.01
848 849 6.888632 AGACTTAATGCTGGAAAGACAATGAT 59.111 34.615 0.00 0.00 0.00 2.45
891 892 9.221775 CTACAAGTTTTGAAATAGTGAACACAC 57.778 33.333 7.68 0.00 35.07 3.82
905 906 5.414454 AGTGAACACACTGCAAAGTTTCTTA 59.586 36.000 7.68 0.00 42.34 2.10
923 924 7.888021 AGTTTCTTACAACATGATATCACCCAA 59.112 33.333 7.78 0.00 0.00 4.12
994 995 7.435192 GCATTTGGTTTAATGTAGGTTGCTATC 59.565 37.037 0.00 0.00 37.72 2.08
1014 1015 0.609662 ACAAAATGGTCTGCATGGCC 59.390 50.000 0.00 0.00 41.87 5.36
1135 1136 4.545678 TGATTTTATTGGTGGATCCCCAG 58.454 43.478 18.08 0.00 44.55 4.45
1142 1143 2.690881 TGGATCCCCAGTTCCCCG 60.691 66.667 9.90 0.00 37.58 5.73
1163 1164 4.563993 CCGTATCCACCAGAGTAAAACCAA 60.564 45.833 0.00 0.00 0.00 3.67
1206 1207 4.910195 TCAAGTCATGATGCCTTTACAGT 58.090 39.130 0.00 0.00 31.50 3.55
1273 1274 2.705658 AGTCAACATGAGTTCAGTCCCA 59.294 45.455 0.00 0.00 35.28 4.37
1295 1296 9.094578 TCCCAAATATAAGTTTCCATTTTCACA 57.905 29.630 0.00 0.00 0.00 3.58
1305 1306 8.472007 AGTTTCCATTTTCACAAATACCTGTA 57.528 30.769 0.00 0.00 30.90 2.74
1378 1379 9.601217 GTAGTGTAATGACCTTAGACATTTCAT 57.399 33.333 9.02 0.00 37.59 2.57
1388 1389 7.512130 ACCTTAGACATTTCATCATCTGCATA 58.488 34.615 0.00 0.00 0.00 3.14
1399 1400 5.999600 TCATCATCTGCATACAAGGTTATGG 59.000 40.000 0.00 0.00 0.00 2.74
1433 1435 7.921786 TCATATTTGGAGAACTGAATTTCGT 57.078 32.000 0.00 0.00 0.00 3.85
1566 1568 8.889717 TGGGTATTTGAGAACGAAAATAAGATC 58.110 33.333 0.00 0.00 31.79 2.75
1634 1636 4.272018 GCTTCACATATCCTACACAAGCAG 59.728 45.833 0.00 0.00 35.99 4.24
1698 1701 6.831353 TGGTAAGTTCTTCCATTTCTTGAACA 59.169 34.615 0.00 0.00 39.33 3.18
1728 1732 6.447162 TCACAGACTCACACACTAACATTAG 58.553 40.000 0.00 0.00 36.82 1.73
1855 1859 2.210116 TCAGTTTGTTTCTCGGCTCAC 58.790 47.619 0.00 0.00 0.00 3.51
1865 1869 5.358725 TGTTTCTCGGCTCACATACTACATA 59.641 40.000 0.00 0.00 0.00 2.29
1875 1879 8.926710 GGCTCACATACTACATATCATGTTTAC 58.073 37.037 0.00 0.00 41.63 2.01
1902 1906 7.872113 TGTGACACACAATGCCATTATATTA 57.128 32.000 3.56 0.00 41.69 0.98
1944 1948 4.678509 TCAGTTGACGCCACAATTTATC 57.321 40.909 0.00 0.00 32.36 1.75
2055 2060 4.562143 CCCCTTTTCATTTTCTGCTTCCAG 60.562 45.833 0.00 0.00 40.54 3.86
2157 2162 4.212425 TGCAGGTATTGTTCAACACGTTAG 59.788 41.667 0.00 0.00 0.00 2.34
2160 2165 4.992951 AGGTATTGTTCAACACGTTAGACC 59.007 41.667 0.00 0.00 0.00 3.85
2220 2225 5.048921 GCATGACAATGAATATGACTCCAGG 60.049 44.000 0.00 0.00 35.67 4.45
2226 2231 6.126652 ACAATGAATATGACTCCAGGCTAGTT 60.127 38.462 0.00 0.00 0.00 2.24
2237 2242 5.131142 ACTCCAGGCTAGTTAGTGCATAAAT 59.869 40.000 0.00 0.00 0.00 1.40
2238 2243 5.368145 TCCAGGCTAGTTAGTGCATAAATG 58.632 41.667 0.00 0.00 0.00 2.32
2251 2256 6.572519 AGTGCATAAATGACACACTGTTTTT 58.427 32.000 15.17 0.00 39.97 1.94
2333 2338 5.817816 GGCTAGTCACTGCATAAACTACATT 59.182 40.000 0.00 0.00 0.00 2.71
2410 2415 6.714810 TGACTTTGTTAATGACTATTGGCACT 59.285 34.615 0.00 0.00 0.00 4.40
2412 2417 8.807948 ACTTTGTTAATGACTATTGGCACTAT 57.192 30.769 0.00 0.00 0.00 2.12
2477 2482 8.039603 TCAACATGGTATTGTATTGTGAAGTC 57.960 34.615 0.00 0.00 0.00 3.01
2504 2509 7.648039 TCATTTATTTAGGGTGGCGTTATTT 57.352 32.000 0.00 0.00 0.00 1.40
2509 2514 2.579410 AGGGTGGCGTTATTTGTTCT 57.421 45.000 0.00 0.00 0.00 3.01
2604 2609 8.087750 TCATGGTTTTTGATTTATGACTGTTCC 58.912 33.333 0.00 0.00 0.00 3.62
2645 2650 6.479660 CACATTTGCTTGGTGTGACTTTAATT 59.520 34.615 0.00 0.00 44.48 1.40
2646 2651 7.651304 CACATTTGCTTGGTGTGACTTTAATTA 59.349 33.333 0.00 0.00 44.48 1.40
2647 2652 8.200792 ACATTTGCTTGGTGTGACTTTAATTAA 58.799 29.630 0.00 0.00 0.00 1.40
2648 2653 9.039870 CATTTGCTTGGTGTGACTTTAATTAAA 57.960 29.630 10.16 10.16 0.00 1.52
2649 2654 9.606631 ATTTGCTTGGTGTGACTTTAATTAAAA 57.393 25.926 11.62 0.00 0.00 1.52
2650 2655 9.606631 TTTGCTTGGTGTGACTTTAATTAAAAT 57.393 25.926 11.62 1.67 0.00 1.82
2699 2706 5.221904 TGAGTCCATTGAACTGATCTGGAAA 60.222 40.000 4.49 0.00 34.99 3.13
2762 2769 2.649531 AGGTGAACCCAAACGATTCA 57.350 45.000 0.00 0.00 36.42 2.57
2912 2919 1.134788 GGGCGTCTACATTACACTGCT 60.135 52.381 0.00 0.00 0.00 4.24
2913 2920 2.100252 GGGCGTCTACATTACACTGCTA 59.900 50.000 0.00 0.00 0.00 3.49
2914 2921 3.114065 GGCGTCTACATTACACTGCTAC 58.886 50.000 0.00 0.00 0.00 3.58
2915 2922 3.181489 GGCGTCTACATTACACTGCTACT 60.181 47.826 0.00 0.00 0.00 2.57
2916 2923 4.036352 GCGTCTACATTACACTGCTACTC 58.964 47.826 0.00 0.00 0.00 2.59
2917 2924 4.599047 CGTCTACATTACACTGCTACTCC 58.401 47.826 0.00 0.00 0.00 3.85
2918 2925 4.497674 CGTCTACATTACACTGCTACTCCC 60.498 50.000 0.00 0.00 0.00 4.30
2919 2926 4.645588 GTCTACATTACACTGCTACTCCCT 59.354 45.833 0.00 0.00 0.00 4.20
2920 2927 4.888239 TCTACATTACACTGCTACTCCCTC 59.112 45.833 0.00 0.00 0.00 4.30
2921 2928 2.766828 ACATTACACTGCTACTCCCTCC 59.233 50.000 0.00 0.00 0.00 4.30
2922 2929 1.471119 TTACACTGCTACTCCCTCCG 58.529 55.000 0.00 0.00 0.00 4.63
2923 2930 0.330604 TACACTGCTACTCCCTCCGT 59.669 55.000 0.00 0.00 0.00 4.69
2924 2931 0.966370 ACACTGCTACTCCCTCCGTC 60.966 60.000 0.00 0.00 0.00 4.79
2925 2932 1.380112 ACTGCTACTCCCTCCGTCC 60.380 63.158 0.00 0.00 0.00 4.79
2926 2933 2.439701 TGCTACTCCCTCCGTCCG 60.440 66.667 0.00 0.00 0.00 4.79
2927 2934 2.124403 GCTACTCCCTCCGTCCGA 60.124 66.667 0.00 0.00 0.00 4.55
2928 2935 1.751927 GCTACTCCCTCCGTCCGAA 60.752 63.158 0.00 0.00 0.00 4.30
2929 2936 1.318158 GCTACTCCCTCCGTCCGAAA 61.318 60.000 0.00 0.00 0.00 3.46
2930 2937 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
2931 2938 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
2932 2939 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2933 2940 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2934 2941 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2935 2942 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2936 2943 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2937 2944 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2938 2945 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2939 2946 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2940 2947 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2941 2948 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2942 2949 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2943 2950 4.201685 CCGTCCGAAAATACTTGTCATCAC 60.202 45.833 0.00 0.00 0.00 3.06
2944 2951 4.387559 CGTCCGAAAATACTTGTCATCACA 59.612 41.667 0.00 0.00 0.00 3.58
2945 2952 5.107259 CGTCCGAAAATACTTGTCATCACAA 60.107 40.000 0.00 0.00 40.40 3.33
2946 2953 6.402118 CGTCCGAAAATACTTGTCATCACAAT 60.402 38.462 0.00 0.00 41.82 2.71
2947 2954 7.201487 CGTCCGAAAATACTTGTCATCACAATA 60.201 37.037 0.00 0.00 41.82 1.90
2948 2955 8.116753 GTCCGAAAATACTTGTCATCACAATAG 58.883 37.037 0.00 0.00 41.82 1.73
2949 2956 8.038351 TCCGAAAATACTTGTCATCACAATAGA 58.962 33.333 0.00 0.00 41.82 1.98
2950 2957 8.830580 CCGAAAATACTTGTCATCACAATAGAT 58.169 33.333 0.00 0.00 41.82 1.98
2958 2965 8.950210 ACTTGTCATCACAATAGATAAAAGGTG 58.050 33.333 0.00 0.00 41.82 4.00
2959 2966 9.166173 CTTGTCATCACAATAGATAAAAGGTGA 57.834 33.333 0.00 0.00 41.82 4.02
2960 2967 9.685276 TTGTCATCACAATAGATAAAAGGTGAT 57.315 29.630 0.00 0.00 44.29 3.06
2968 2975 9.698309 ACAATAGATAAAAGGTGATGTATCTCG 57.302 33.333 0.00 0.00 35.46 4.04
2969 2976 9.914131 CAATAGATAAAAGGTGATGTATCTCGA 57.086 33.333 0.00 0.00 35.46 4.04
2971 2978 9.915629 ATAGATAAAAGGTGATGTATCTCGAAC 57.084 33.333 0.00 0.00 35.46 3.95
2972 2979 8.012957 AGATAAAAGGTGATGTATCTCGAACT 57.987 34.615 0.00 0.00 29.23 3.01
2973 2980 9.132923 AGATAAAAGGTGATGTATCTCGAACTA 57.867 33.333 0.00 0.00 29.23 2.24
2974 2981 9.745880 GATAAAAGGTGATGTATCTCGAACTAA 57.254 33.333 0.00 0.00 0.00 2.24
2976 2983 8.842358 AAAAGGTGATGTATCTCGAACTAAAA 57.158 30.769 0.00 0.00 0.00 1.52
2977 2984 9.449719 AAAAGGTGATGTATCTCGAACTAAAAT 57.550 29.630 0.00 0.00 0.00 1.82
2980 2987 9.698309 AGGTGATGTATCTCGAACTAAAATATG 57.302 33.333 0.00 0.00 0.00 1.78
2981 2988 9.477484 GGTGATGTATCTCGAACTAAAATATGT 57.523 33.333 0.00 0.00 0.00 2.29
3004 3011 9.607333 ATGTCTAGATACATCCTCTTTTATCCA 57.393 33.333 0.00 0.00 35.08 3.41
3005 3012 9.607333 TGTCTAGATACATCCTCTTTTATCCAT 57.393 33.333 0.00 0.00 0.00 3.41
3013 3020 8.827832 ACATCCTCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 32.39 2.92
3014 3021 8.689972 ACATCCTCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 32.39 3.06
3015 3022 8.689061 CATCCTCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 0.00 3.58
3016 3023 8.648698 TCCTCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
3017 3024 8.742777 TCCTCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
3018 3025 8.526147 CCTCTTTTATCCATTTTGATGACAAGT 58.474 33.333 0.00 0.00 37.32 3.16
3025 3032 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
3026 3033 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3027 3034 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3028 3035 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3029 3036 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3030 3037 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3031 3038 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3032 3039 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3033 3040 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3034 3041 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3035 3042 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3036 3043 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3044 3051 0.526662 GGACGGAGGGAGTATATGCG 59.473 60.000 0.00 0.00 0.00 4.73
3171 3179 9.875691 ATAAAAGTGAAATTAAAATCTCAGCCC 57.124 29.630 0.00 0.00 0.00 5.19
3186 3194 4.876107 TCTCAGCCCGAAAATAAGAACATC 59.124 41.667 0.00 0.00 0.00 3.06
3213 3221 3.221771 TGACTTTGAGTTGACCAATGGG 58.778 45.455 3.55 0.00 41.29 4.00
3227 3235 2.167075 CCAATGGGAATGAGAGCAAACC 59.833 50.000 0.00 0.00 35.59 3.27
3377 3385 4.957759 ATTAGTATTGCCACCACGTTTC 57.042 40.909 0.00 0.00 0.00 2.78
3397 3405 2.557924 TCTGGTTTGCATTAGCTTGTGG 59.442 45.455 0.00 0.00 42.74 4.17
3404 3412 1.340017 GCATTAGCTTGTGGTCCTCCA 60.340 52.381 0.00 0.00 38.50 3.86
3412 3420 3.622206 GCTTGTGGTCCTCCATGATACAA 60.622 47.826 0.00 0.00 46.20 2.41
3417 3425 6.726379 TGTGGTCCTCCATGATACAAATTTA 58.274 36.000 0.00 0.00 46.20 1.40
3446 3454 6.146021 GCCCACTTTTGTTTAGATGTGAAATG 59.854 38.462 0.00 0.00 0.00 2.32
3499 3507 4.449131 TGATAGTACGGACTACAGAGGTG 58.551 47.826 10.38 0.00 41.01 4.00
3583 3591 4.827284 GCTATATAATGGTTGTGGCAAGGT 59.173 41.667 0.00 0.00 0.00 3.50
3602 3610 2.495084 GTCCAACTTTCTGGTCAGGTC 58.505 52.381 0.00 0.00 37.74 3.85
3656 3664 8.472007 TCTTTGTTGTATAGGGTTCAAAACAT 57.528 30.769 0.00 0.00 0.00 2.71
3663 3671 1.963515 AGGGTTCAAAACATCTGCCAC 59.036 47.619 0.00 0.00 0.00 5.01
3781 3789 1.889829 TGCTAACGACCATTTTTGGGG 59.110 47.619 0.00 0.00 0.00 4.96
3788 3796 0.401250 ACCATTTTTGGGGGCCAAGT 60.401 50.000 4.39 0.00 44.84 3.16
3832 3842 4.631377 GGTTGGCCTTTGCAGAAATAATTC 59.369 41.667 3.32 0.00 40.13 2.17
3834 3844 3.837146 TGGCCTTTGCAGAAATAATTCCA 59.163 39.130 3.32 0.00 40.13 3.53
3843 3853 7.514784 TGCAGAAATAATTCCATGATTCGAT 57.485 32.000 0.00 0.00 36.12 3.59
3915 3925 9.304731 GCTTCAGCAAATGATATTATTTGACAA 57.695 29.630 27.96 17.74 46.13 3.18
3969 3979 2.418976 CTCAGTGCCAACATGATGTCTG 59.581 50.000 0.00 1.60 0.00 3.51
4077 4091 5.647589 CAGTTGATTATTGTGAGCAATGCT 58.352 37.500 7.79 7.79 44.32 3.79
4135 4149 5.416013 TCATCAGTAATATGAGCTCCTACGG 59.584 44.000 12.15 8.40 31.44 4.02
4191 4205 7.031537 GGGGTTTCCAGTTTCTAATGGTACAT 61.032 42.308 0.00 0.00 38.35 2.29
4192 4206 8.762834 GGGGTTTCCAGTTTCTAATGGTACATC 61.763 44.444 0.00 0.00 38.35 3.06
4230 4244 8.902806 GTTTGGTATCAATTCTGGTTGATCATA 58.097 33.333 0.00 0.00 43.44 2.15
4231 4245 9.645128 TTTGGTATCAATTCTGGTTGATCATAT 57.355 29.630 0.00 0.00 43.44 1.78
4232 4246 8.853077 TGGTATCAATTCTGGTTGATCATATC 57.147 34.615 0.00 0.00 43.44 1.63
4233 4247 8.663167 TGGTATCAATTCTGGTTGATCATATCT 58.337 33.333 0.00 0.00 43.44 1.98
4234 4248 9.512588 GGTATCAATTCTGGTTGATCATATCTT 57.487 33.333 0.00 0.00 43.44 2.40
4298 4350 4.658901 GGGACTTGAATAATACTCCCTCCA 59.341 45.833 0.00 0.00 35.37 3.86
4362 4414 8.862325 TGCAAAACGATCTTATATTATGGGAT 57.138 30.769 0.00 0.00 0.00 3.85
4549 4601 2.185004 AAACTTGCGCCTGTGTCTAT 57.815 45.000 4.18 0.00 0.00 1.98
4551 4603 0.108138 ACTTGCGCCTGTGTCTATCC 60.108 55.000 4.18 0.00 0.00 2.59
4554 4606 3.077519 GCGCCTGTGTCTATCCGGT 62.078 63.158 0.00 0.00 0.00 5.28
4585 4637 9.520204 CCAATAACCTAGCAAATGATAAGTTTG 57.480 33.333 0.00 0.00 39.08 2.93
4593 4645 5.244626 AGCAAATGATAAGTTTGTGCCTTCT 59.755 36.000 0.00 0.00 38.49 2.85
4661 4713 7.285401 ACAGTTTGTTCTTATGAGATGGTGTTT 59.715 33.333 0.00 0.00 0.00 2.83
4668 4720 9.696917 GTTCTTATGAGATGGTGTTTTGATTTT 57.303 29.630 0.00 0.00 0.00 1.82
4803 4855 1.002366 CGGAGCATTCACACAGCTAC 58.998 55.000 0.00 0.00 39.02 3.58
4886 4938 8.352137 TCAACATTACATGGTTCTGATGATTT 57.648 30.769 0.00 0.00 33.60 2.17
4905 4957 5.479724 TGATTTGGCATTACATGGTTCTGAA 59.520 36.000 0.00 0.00 0.00 3.02
4906 4958 5.999205 TTTGGCATTACATGGTTCTGAAT 57.001 34.783 0.00 0.00 0.00 2.57
4932 4984 3.492383 CAGTATTACATGCTGCTCGGAAG 59.508 47.826 0.00 0.00 36.24 3.46
4944 4996 1.221840 TCGGAAGAGCAGCATTCCC 59.778 57.895 18.95 4.34 41.69 3.97
4945 4997 1.078214 CGGAAGAGCAGCATTCCCA 60.078 57.895 18.95 0.00 41.69 4.37
5004 5056 6.759272 AGGCGCAATATCTTAACATCTTCTA 58.241 36.000 10.83 0.00 0.00 2.10
5021 5073 7.069950 ACATCTTCTATTACTGAGTGGTGCATA 59.930 37.037 0.00 0.00 0.00 3.14
5022 5074 7.603180 TCTTCTATTACTGAGTGGTGCATAT 57.397 36.000 0.00 0.00 0.00 1.78
5028 5080 1.942657 CTGAGTGGTGCATATTTCCCG 59.057 52.381 0.00 0.00 0.00 5.14
5195 5247 1.767759 AGAAGCAGGTGCAACAAAGT 58.232 45.000 3.64 0.00 45.16 2.66
5246 5298 4.579869 TGGAGCTGGATTTCACTACTTTC 58.420 43.478 0.00 0.00 0.00 2.62
5262 5314 7.281549 TCACTACTTTCCTTTGTCCTGTAAAAC 59.718 37.037 0.00 0.00 0.00 2.43
5274 5326 3.056304 CCTGTAAAACACAATTTGGCCG 58.944 45.455 0.00 0.00 36.48 6.13
5284 5336 2.160813 ACAATTTGGCCGTGTCGAATAC 59.839 45.455 0.00 0.00 0.00 1.89
5377 5429 5.941788 ACATAGGAAGCATTTAGTTAGGGG 58.058 41.667 0.00 0.00 0.00 4.79
5381 5433 4.410555 AGGAAGCATTTAGTTAGGGGAGAG 59.589 45.833 0.00 0.00 0.00 3.20
5513 5565 6.312918 ACACTAAAGTAATATGGTGTGCTTCG 59.687 38.462 0.00 0.00 36.70 3.79
5593 5652 8.548877 TCTAATTTTACTGGAAGGCTCTTGTAT 58.451 33.333 0.00 0.00 39.30 2.29
5601 5660 3.181464 GGAAGGCTCTTGTATCAGTACCC 60.181 52.174 0.00 0.00 0.00 3.69
5640 5700 2.036217 CCTGCAGAAAACAAATGAGGCA 59.964 45.455 17.39 0.00 0.00 4.75
5657 5717 8.503458 AATGAGGCATGCTTATATCATCTTAC 57.497 34.615 18.92 0.00 0.00 2.34
5659 5719 7.683578 TGAGGCATGCTTATATCATCTTACTT 58.316 34.615 18.92 0.00 0.00 2.24
5710 5770 0.314578 CGCAGAAGCAATCTAACGCG 60.315 55.000 3.53 3.53 42.27 6.01
5721 5781 0.174845 TCTAACGCGCTACCTGCAAT 59.825 50.000 5.73 0.00 43.06 3.56
5790 5851 4.313277 TGTTGCCACGAATTTCAAATCA 57.687 36.364 0.00 0.00 0.00 2.57
5828 5889 4.422073 ACAATGGCTAATCTTGGATCGA 57.578 40.909 0.00 0.00 0.00 3.59
6081 6142 3.412237 TGGTAGAAGCTAACCACAACC 57.588 47.619 10.60 2.32 40.84 3.77
6083 6144 2.305052 GGTAGAAGCTAACCACAACCCT 59.695 50.000 7.72 0.00 35.73 4.34
6097 6158 3.012722 CCCTTTCCGGCCCTGGTA 61.013 66.667 0.00 0.00 0.00 3.25
6101 6162 0.751643 CTTTCCGGCCCTGGTAATGG 60.752 60.000 0.00 0.00 0.00 3.16
6118 6179 9.530633 CTGGTAATGGAACTAAGTGTAGATAAC 57.469 37.037 0.00 0.00 0.00 1.89
6200 6261 2.821969 CTCCAAACCAGCAGTAGCATTT 59.178 45.455 0.00 0.00 45.49 2.32
6204 6266 3.648339 AACCAGCAGTAGCATTTGTTG 57.352 42.857 0.00 0.00 45.49 3.33
6296 6358 4.074970 CAATCTGTGGCAGGGTTATATCC 58.925 47.826 0.00 0.00 31.51 2.59
6308 6370 6.014499 GCAGGGTTATATCCAGTAGTACATGT 60.014 42.308 2.69 2.69 0.00 3.21
6417 6491 4.499696 GGGGACAATGCCTAAATGAAATCG 60.500 45.833 0.00 0.00 0.00 3.34
6418 6492 4.044426 GGACAATGCCTAAATGAAATCGC 58.956 43.478 0.00 0.00 0.00 4.58
6419 6493 4.202050 GGACAATGCCTAAATGAAATCGCT 60.202 41.667 0.00 0.00 0.00 4.93
6420 6494 4.675510 ACAATGCCTAAATGAAATCGCTG 58.324 39.130 0.00 0.00 0.00 5.18
6421 6495 3.996150 ATGCCTAAATGAAATCGCTGG 57.004 42.857 0.00 0.00 0.00 4.85
6422 6496 2.722094 TGCCTAAATGAAATCGCTGGT 58.278 42.857 0.00 0.00 0.00 4.00
6423 6497 3.879998 TGCCTAAATGAAATCGCTGGTA 58.120 40.909 0.00 0.00 0.00 3.25
6424 6498 4.460263 TGCCTAAATGAAATCGCTGGTAT 58.540 39.130 0.00 0.00 0.00 2.73
6425 6499 5.616270 TGCCTAAATGAAATCGCTGGTATA 58.384 37.500 0.00 0.00 0.00 1.47
6426 6500 5.468746 TGCCTAAATGAAATCGCTGGTATAC 59.531 40.000 0.00 0.00 0.00 1.47
6446 6522 7.607991 GGTATACCATGAGCTAAATGTAAGCAT 59.392 37.037 17.44 0.00 37.98 3.79
6448 6524 6.382869 ACCATGAGCTAAATGTAAGCATTC 57.617 37.500 0.00 0.00 43.89 2.67
6460 6536 3.636300 TGTAAGCATTCTGCCAAAACTGT 59.364 39.130 0.00 0.00 46.52 3.55
6461 6537 3.375782 AAGCATTCTGCCAAAACTGTC 57.624 42.857 0.00 0.00 46.52 3.51
6499 6575 2.198827 TCAATCTTCCCATTGCGTGT 57.801 45.000 0.00 0.00 34.26 4.49
6520 6596 0.975556 TCGACCAGCTCCAGGCAATA 60.976 55.000 0.00 0.00 44.79 1.90
6537 6694 2.246719 ATAGATTCTGCAGTTCGGGC 57.753 50.000 14.67 0.00 0.00 6.13
6544 6701 1.577328 CTGCAGTTCGGGCGTTTGAT 61.577 55.000 5.25 0.00 0.00 2.57
6587 6744 0.734889 CCTGCCATAGCTTTCGTTGG 59.265 55.000 0.00 0.00 40.80 3.77
6594 6751 4.142381 GCCATAGCTTTCGTTGGAAATTCT 60.142 41.667 0.00 0.00 41.12 2.40
6621 6778 1.451927 GCAATGATCACGCCCTCCA 60.452 57.895 0.00 0.00 0.00 3.86
6622 6779 1.442526 GCAATGATCACGCCCTCCAG 61.443 60.000 0.00 0.00 0.00 3.86
6627 6784 2.315781 GATCACGCCCTCCAGCATCA 62.316 60.000 0.00 0.00 0.00 3.07
6677 6834 1.558233 ACGATCTCGGAGGAGGTTTT 58.442 50.000 4.96 0.00 44.95 2.43
6690 6847 2.037641 GGAGGTTTTTGCCATCTTGCTT 59.962 45.455 0.00 0.00 0.00 3.91
6703 6860 1.856265 CTTGCTTCAGGAACGGGTGC 61.856 60.000 0.00 0.00 0.00 5.01
6708 6865 1.407656 TTCAGGAACGGGTGCAGTCT 61.408 55.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 6.533012 CCTACATTCAGATCACACTACACTTG 59.467 42.308 0.00 0.00 0.00 3.16
218 219 5.570205 TCCTAAAATATGTGCCCCGAATA 57.430 39.130 0.00 0.00 0.00 1.75
275 276 3.944650 TGATGTTACATTGACATTCCCCG 59.055 43.478 0.00 0.00 37.83 5.73
373 374 4.021280 TGCATAAGTTCCATTTGCATGTGT 60.021 37.500 0.00 0.00 38.32 3.72
375 376 4.804868 TGCATAAGTTCCATTTGCATGT 57.195 36.364 0.00 0.00 38.32 3.21
393 394 3.005684 CCAACTTATCAGCCAGTTTTGCA 59.994 43.478 0.00 0.00 30.48 4.08
454 455 5.361571 TCTCTAAGTACCGCCATGAACATTA 59.638 40.000 0.00 0.00 0.00 1.90
468 469 9.660180 AATTCAAACTCCAAGATCTCTAAGTAC 57.340 33.333 0.00 0.00 0.00 2.73
479 480 3.250762 CGCTGACAATTCAAACTCCAAGA 59.749 43.478 0.00 0.00 0.00 3.02
510 511 7.951565 GGCTGAAACAATGAACAAAAATAATCG 59.048 33.333 0.00 0.00 0.00 3.34
530 531 4.640771 ATCCTAAACACTCAAGGCTGAA 57.359 40.909 0.00 0.00 0.00 3.02
617 618 5.182487 ACAAACTTGAAAACATTTGGGACC 58.818 37.500 0.00 0.00 33.34 4.46
620 621 7.376435 AGAAACAAACTTGAAAACATTTGGG 57.624 32.000 0.00 0.00 33.34 4.12
632 633 8.629986 CGCATTTCATAACTAGAAACAAACTTG 58.370 33.333 0.00 0.00 37.76 3.16
664 665 4.331168 GCCAATGTGTCAGTCTTGATACTC 59.669 45.833 6.10 0.00 43.52 2.59
666 667 4.256920 AGCCAATGTGTCAGTCTTGATAC 58.743 43.478 0.00 0.00 43.45 2.24
668 669 3.430042 AGCCAATGTGTCAGTCTTGAT 57.570 42.857 0.00 0.00 35.39 2.57
669 670 2.936919 AGCCAATGTGTCAGTCTTGA 57.063 45.000 0.00 0.00 0.00 3.02
670 671 3.438087 CCTTAGCCAATGTGTCAGTCTTG 59.562 47.826 0.00 0.00 0.00 3.02
671 672 3.560025 CCCTTAGCCAATGTGTCAGTCTT 60.560 47.826 0.00 0.00 0.00 3.01
672 673 2.026822 CCCTTAGCCAATGTGTCAGTCT 60.027 50.000 0.00 0.00 0.00 3.24
673 674 2.359900 CCCTTAGCCAATGTGTCAGTC 58.640 52.381 0.00 0.00 0.00 3.51
674 675 1.614317 GCCCTTAGCCAATGTGTCAGT 60.614 52.381 0.00 0.00 34.35 3.41
675 676 1.098050 GCCCTTAGCCAATGTGTCAG 58.902 55.000 0.00 0.00 34.35 3.51
676 677 0.698238 AGCCCTTAGCCAATGTGTCA 59.302 50.000 0.00 0.00 45.47 3.58
677 678 1.340017 TGAGCCCTTAGCCAATGTGTC 60.340 52.381 0.00 0.00 45.47 3.67
678 679 0.698238 TGAGCCCTTAGCCAATGTGT 59.302 50.000 0.00 0.00 45.47 3.72
679 680 1.679680 CATGAGCCCTTAGCCAATGTG 59.320 52.381 0.00 0.00 45.47 3.21
680 681 1.285962 ACATGAGCCCTTAGCCAATGT 59.714 47.619 0.00 0.00 45.47 2.71
681 682 2.062971 ACATGAGCCCTTAGCCAATG 57.937 50.000 0.00 0.00 45.47 2.82
682 683 2.291800 ACAACATGAGCCCTTAGCCAAT 60.292 45.455 0.00 0.00 45.47 3.16
683 684 1.075374 ACAACATGAGCCCTTAGCCAA 59.925 47.619 0.00 0.00 45.47 4.52
684 685 0.698238 ACAACATGAGCCCTTAGCCA 59.302 50.000 0.00 0.00 45.47 4.75
685 686 2.710096 TACAACATGAGCCCTTAGCC 57.290 50.000 0.00 0.00 45.47 3.93
686 687 5.308825 ACATATACAACATGAGCCCTTAGC 58.691 41.667 0.00 0.00 44.25 3.09
687 688 6.591834 GCTACATATACAACATGAGCCCTTAG 59.408 42.308 0.00 0.00 0.00 2.18
688 689 6.270000 AGCTACATATACAACATGAGCCCTTA 59.730 38.462 0.00 0.00 32.05 2.69
689 690 5.072329 AGCTACATATACAACATGAGCCCTT 59.928 40.000 0.00 0.00 32.05 3.95
690 691 4.594920 AGCTACATATACAACATGAGCCCT 59.405 41.667 0.00 0.00 32.05 5.19
691 692 4.692625 CAGCTACATATACAACATGAGCCC 59.307 45.833 0.00 0.00 32.05 5.19
692 693 4.153117 GCAGCTACATATACAACATGAGCC 59.847 45.833 0.00 0.00 32.05 4.70
693 694 4.751600 TGCAGCTACATATACAACATGAGC 59.248 41.667 0.00 0.00 31.94 4.26
694 695 5.987953 AGTGCAGCTACATATACAACATGAG 59.012 40.000 0.00 0.00 0.00 2.90
695 696 5.917462 AGTGCAGCTACATATACAACATGA 58.083 37.500 0.00 0.00 0.00 3.07
696 697 6.037500 ACAAGTGCAGCTACATATACAACATG 59.962 38.462 0.00 0.00 0.00 3.21
697 698 6.037500 CACAAGTGCAGCTACATATACAACAT 59.962 38.462 0.00 0.00 0.00 2.71
698 699 5.351189 CACAAGTGCAGCTACATATACAACA 59.649 40.000 0.00 0.00 0.00 3.33
699 700 5.351465 ACACAAGTGCAGCTACATATACAAC 59.649 40.000 0.00 0.00 0.00 3.32
700 701 5.487433 ACACAAGTGCAGCTACATATACAA 58.513 37.500 0.00 0.00 0.00 2.41
701 702 5.084818 ACACAAGTGCAGCTACATATACA 57.915 39.130 0.00 0.00 0.00 2.29
702 703 5.580691 TCAACACAAGTGCAGCTACATATAC 59.419 40.000 0.00 0.00 0.00 1.47
703 704 5.729510 TCAACACAAGTGCAGCTACATATA 58.270 37.500 0.00 0.00 0.00 0.86
704 705 4.578871 TCAACACAAGTGCAGCTACATAT 58.421 39.130 0.00 0.00 0.00 1.78
705 706 4.001618 TCAACACAAGTGCAGCTACATA 57.998 40.909 0.00 0.00 0.00 2.29
706 707 2.849942 TCAACACAAGTGCAGCTACAT 58.150 42.857 0.00 0.00 0.00 2.29
707 708 2.323968 TCAACACAAGTGCAGCTACA 57.676 45.000 0.00 0.00 0.00 2.74
708 709 3.691049 TTTCAACACAAGTGCAGCTAC 57.309 42.857 0.00 0.00 0.00 3.58
709 710 4.916983 AATTTCAACACAAGTGCAGCTA 57.083 36.364 0.00 0.00 0.00 3.32
710 711 3.806625 AATTTCAACACAAGTGCAGCT 57.193 38.095 0.00 0.00 0.00 4.24
711 712 3.245990 GGAAATTTCAACACAAGTGCAGC 59.754 43.478 19.49 0.00 0.00 5.25
712 713 3.803778 GGGAAATTTCAACACAAGTGCAG 59.196 43.478 19.49 0.00 0.00 4.41
713 714 3.196469 TGGGAAATTTCAACACAAGTGCA 59.804 39.130 19.49 0.00 0.00 4.57
714 715 3.791245 TGGGAAATTTCAACACAAGTGC 58.209 40.909 19.49 0.00 0.00 4.40
715 716 5.236911 CCAATGGGAAATTTCAACACAAGTG 59.763 40.000 19.49 12.97 35.59 3.16
716 717 5.130145 TCCAATGGGAAATTTCAACACAAGT 59.870 36.000 19.49 1.20 41.32 3.16
717 718 5.609423 TCCAATGGGAAATTTCAACACAAG 58.391 37.500 19.49 10.45 41.32 3.16
718 719 5.620738 TCCAATGGGAAATTTCAACACAA 57.379 34.783 19.49 0.00 41.32 3.33
738 739 4.142271 TGCCACCGATTCATTAACAAATCC 60.142 41.667 6.22 0.00 0.00 3.01
747 748 1.105457 CCATGTGCCACCGATTCATT 58.895 50.000 0.00 0.00 0.00 2.57
776 777 4.716784 AGATGTGTCACTGGTATGTGGTAT 59.283 41.667 4.27 0.00 38.40 2.73
777 778 4.093743 AGATGTGTCACTGGTATGTGGTA 58.906 43.478 4.27 0.00 38.40 3.25
778 779 2.906389 AGATGTGTCACTGGTATGTGGT 59.094 45.455 4.27 0.00 38.40 4.16
779 780 3.616956 AGATGTGTCACTGGTATGTGG 57.383 47.619 4.27 0.00 38.40 4.17
780 781 4.378770 GCAAAGATGTGTCACTGGTATGTG 60.379 45.833 4.27 0.00 39.15 3.21
781 782 3.753272 GCAAAGATGTGTCACTGGTATGT 59.247 43.478 4.27 0.00 0.00 2.29
782 783 3.752747 TGCAAAGATGTGTCACTGGTATG 59.247 43.478 4.27 0.06 0.00 2.39
783 784 4.019792 TGCAAAGATGTGTCACTGGTAT 57.980 40.909 4.27 0.00 0.00 2.73
788 789 3.748083 ACAGATGCAAAGATGTGTCACT 58.252 40.909 4.27 0.00 0.00 3.41
795 796 6.310467 CCATGAAGAAAACAGATGCAAAGATG 59.690 38.462 0.00 0.00 0.00 2.90
800 801 5.072055 TCTCCATGAAGAAAACAGATGCAA 58.928 37.500 0.00 0.00 0.00 4.08
807 808 7.094634 GCATTAAGTCTCTCCATGAAGAAAACA 60.095 37.037 0.00 0.00 0.00 2.83
815 816 4.033009 TCCAGCATTAAGTCTCTCCATGA 58.967 43.478 0.00 0.00 0.00 3.07
828 829 5.591472 CCTGATCATTGTCTTTCCAGCATTA 59.409 40.000 0.00 0.00 0.00 1.90
848 849 9.461312 AAACTTGTAGTTTGATTATATGCCTGA 57.539 29.630 4.14 0.00 45.83 3.86
888 889 5.637006 TGTTGTAAGAAACTTTGCAGTGT 57.363 34.783 0.00 0.00 31.60 3.55
891 892 9.282247 GATATCATGTTGTAAGAAACTTTGCAG 57.718 33.333 0.00 0.00 0.00 4.41
905 906 4.018506 TGGACTTGGGTGATATCATGTTGT 60.019 41.667 9.02 5.04 0.00 3.32
978 979 7.613801 ACCATTTTGTGATAGCAACCTACATTA 59.386 33.333 0.00 0.00 0.00 1.90
994 995 1.673626 GGCCATGCAGACCATTTTGTG 60.674 52.381 0.00 0.00 29.71 3.33
1014 1015 5.345741 CACAGAAGCCATTTTAAAATGTCCG 59.654 40.000 29.82 19.88 43.24 4.79
1041 1042 6.126997 TGGCATGATTTTCCATCATTAGCTTT 60.127 34.615 0.00 0.00 36.69 3.51
1125 1126 2.184194 TACGGGGAACTGGGGATCCA 62.184 60.000 15.23 0.00 42.76 3.41
1135 1136 0.464452 CTCTGGTGGATACGGGGAAC 59.536 60.000 0.00 0.00 42.51 3.62
1142 1143 7.336396 ACTATTGGTTTTACTCTGGTGGATAC 58.664 38.462 0.00 0.00 0.00 2.24
1263 1264 7.696992 TGGAAACTTATATTTGGGACTGAAC 57.303 36.000 0.00 0.00 0.00 3.18
1378 1379 5.372343 ACCATAACCTTGTATGCAGATGA 57.628 39.130 0.00 0.00 31.24 2.92
1433 1435 7.548780 GCAAAATGAAATATGGAGGCAAGTAAA 59.451 33.333 0.00 0.00 0.00 2.01
1578 1580 1.688772 ATCACCTCATCTGCCAATGC 58.311 50.000 0.00 0.00 38.26 3.56
1579 1581 5.533528 TCATTAATCACCTCATCTGCCAATG 59.466 40.000 0.00 0.00 0.00 2.82
1634 1636 1.202076 GGTTCATGTGCGCTAAGAAGC 60.202 52.381 9.73 13.14 45.86 3.86
1698 1701 2.037772 GTGTGTGAGTCTGTGATCCCTT 59.962 50.000 0.00 0.00 0.00 3.95
1728 1732 2.742053 TGATAAAGGCACGCAGAAGTTC 59.258 45.455 0.00 0.00 0.00 3.01
1823 1827 8.335356 CGAGAAACAAACTGAGAAAAACTGATA 58.665 33.333 0.00 0.00 0.00 2.15
1824 1828 7.189512 CGAGAAACAAACTGAGAAAAACTGAT 58.810 34.615 0.00 0.00 0.00 2.90
1865 1869 4.572795 TGTGTGTCACAACGTAAACATGAT 59.427 37.500 7.38 0.00 41.69 2.45
2055 2060 8.341173 CCTTCAATATAAGATGTCAGCTCAAAC 58.659 37.037 0.00 0.00 0.00 2.93
2160 2165 8.696410 ACTAAATTACACCAAAACAGTGTTTG 57.304 30.769 21.53 12.37 46.07 2.93
2194 2199 6.124340 TGGAGTCATATTCATTGTCATGCTT 58.876 36.000 0.00 0.00 0.00 3.91
2204 2209 6.784969 ACTAACTAGCCTGGAGTCATATTCAT 59.215 38.462 0.00 0.00 0.00 2.57
2220 2225 6.313905 AGTGTGTCATTTATGCACTAACTAGC 59.686 38.462 14.07 0.00 38.46 3.42
2226 2231 6.875948 AAACAGTGTGTCATTTATGCACTA 57.124 33.333 0.00 0.00 38.21 2.74
2237 2242 4.855715 TTCCAACAAAAACAGTGTGTCA 57.144 36.364 0.00 0.00 0.00 3.58
2238 2243 4.985409 TGTTTCCAACAAAAACAGTGTGTC 59.015 37.500 0.00 0.00 40.64 3.67
2251 2256 2.935201 GTTTGCAGCATTGTTTCCAACA 59.065 40.909 0.00 0.00 40.21 3.33
2309 2314 4.755411 TGTAGTTTATGCAGTGACTAGCC 58.245 43.478 0.00 0.00 0.00 3.93
2392 2397 7.928706 AGAGTGATAGTGCCAATAGTCATTAAC 59.071 37.037 0.00 0.00 0.00 2.01
2412 2417 7.443272 CCAGTTGCATGATGAATAATAGAGTGA 59.557 37.037 0.00 0.00 0.00 3.41
2475 2480 5.067283 ACGCCACCCTAAATAAATGAATGAC 59.933 40.000 0.00 0.00 0.00 3.06
2477 2482 5.514274 ACGCCACCCTAAATAAATGAATG 57.486 39.130 0.00 0.00 0.00 2.67
2571 2576 9.190858 TCATAAATCAAAAACCATGAAAACTCG 57.809 29.630 0.00 0.00 0.00 4.18
2657 2662 6.126997 TGGACTCACCTTGTAGAAAGTGTAAA 60.127 38.462 1.68 0.00 39.86 2.01
2699 2706 8.963725 TCTGCAGAAGTCAAAATATCAATGAAT 58.036 29.630 15.67 0.00 0.00 2.57
2762 2769 4.020573 TGAACATCGTCTTCTACACCCATT 60.021 41.667 0.00 0.00 0.00 3.16
2912 2919 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2913 2920 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2914 2921 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2915 2922 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2916 2923 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2917 2924 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2918 2925 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2919 2926 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2920 2927 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2921 2928 4.387559 TGTGATGACAAGTATTTTCGGACG 59.612 41.667 0.00 0.00 0.00 4.79
2922 2929 5.856126 TGTGATGACAAGTATTTTCGGAC 57.144 39.130 0.00 0.00 0.00 4.79
2923 2930 8.038351 TCTATTGTGATGACAAGTATTTTCGGA 58.962 33.333 3.63 0.00 45.29 4.55
2924 2931 8.196802 TCTATTGTGATGACAAGTATTTTCGG 57.803 34.615 3.63 0.00 45.29 4.30
2932 2939 8.950210 CACCTTTTATCTATTGTGATGACAAGT 58.050 33.333 3.63 0.00 45.29 3.16
2933 2940 9.166173 TCACCTTTTATCTATTGTGATGACAAG 57.834 33.333 3.63 0.00 45.29 3.16
2934 2941 9.685276 ATCACCTTTTATCTATTGTGATGACAA 57.315 29.630 0.00 0.00 46.13 3.18
2942 2949 9.698309 CGAGATACATCACCTTTTATCTATTGT 57.302 33.333 0.00 0.00 32.54 2.71
2943 2950 9.914131 TCGAGATACATCACCTTTTATCTATTG 57.086 33.333 0.00 0.00 32.54 1.90
2945 2952 9.915629 GTTCGAGATACATCACCTTTTATCTAT 57.084 33.333 0.00 0.00 32.54 1.98
2946 2953 9.132923 AGTTCGAGATACATCACCTTTTATCTA 57.867 33.333 0.00 0.00 32.54 1.98
2947 2954 8.012957 AGTTCGAGATACATCACCTTTTATCT 57.987 34.615 0.00 0.00 34.61 1.98
2948 2955 9.745880 TTAGTTCGAGATACATCACCTTTTATC 57.254 33.333 0.00 0.00 0.00 1.75
2950 2957 9.932207 TTTTAGTTCGAGATACATCACCTTTTA 57.068 29.630 0.00 0.00 0.00 1.52
2951 2958 8.842358 TTTTAGTTCGAGATACATCACCTTTT 57.158 30.769 0.00 0.00 0.00 2.27
2954 2961 9.698309 CATATTTTAGTTCGAGATACATCACCT 57.302 33.333 0.00 0.00 0.00 4.00
2955 2962 9.477484 ACATATTTTAGTTCGAGATACATCACC 57.523 33.333 0.00 0.00 0.00 4.02
2978 2985 9.607333 TGGATAAAAGAGGATGTATCTAGACAT 57.393 33.333 0.00 0.00 42.82 3.06
2979 2986 9.607333 ATGGATAAAAGAGGATGTATCTAGACA 57.393 33.333 0.00 0.00 0.00 3.41
2987 2994 9.919416 TCATCAAAATGGATAAAAGAGGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
2988 2995 8.689972 GTCATCAAAATGGATAAAAGAGGATGT 58.310 33.333 0.00 0.00 33.42 3.06
2989 2996 8.689061 TGTCATCAAAATGGATAAAAGAGGATG 58.311 33.333 0.00 0.00 33.42 3.51
2990 2997 8.827832 TGTCATCAAAATGGATAAAAGAGGAT 57.172 30.769 0.00 0.00 33.42 3.24
2991 2998 8.648698 TTGTCATCAAAATGGATAAAAGAGGA 57.351 30.769 0.00 0.00 33.42 3.71
2992 2999 8.526147 ACTTGTCATCAAAATGGATAAAAGAGG 58.474 33.333 0.00 0.00 33.42 3.69
3000 3007 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3001 3008 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3002 3009 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3003 3010 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3004 3011 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3005 3012 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3006 3013 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3007 3014 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3008 3015 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3009 3016 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3010 3017 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3011 3018 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3012 3019 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3013 3020 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3014 3021 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3015 3022 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3016 3023 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3017 3024 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3018 3025 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3019 3026 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
3020 3027 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
3021 3028 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
3022 3029 2.511659 CATATACTCCCTCCGTCCGAA 58.488 52.381 0.00 0.00 0.00 4.30
3023 3030 1.885359 GCATATACTCCCTCCGTCCGA 60.885 57.143 0.00 0.00 0.00 4.55
3024 3031 0.526662 GCATATACTCCCTCCGTCCG 59.473 60.000 0.00 0.00 0.00 4.79
3025 3032 0.526662 CGCATATACTCCCTCCGTCC 59.473 60.000 0.00 0.00 0.00 4.79
3026 3033 1.245732 ACGCATATACTCCCTCCGTC 58.754 55.000 0.00 0.00 0.00 4.79
3027 3034 1.700955 AACGCATATACTCCCTCCGT 58.299 50.000 0.00 0.00 0.00 4.69
3028 3035 2.814280 AAACGCATATACTCCCTCCG 57.186 50.000 0.00 0.00 0.00 4.63
3084 3092 8.446599 AAACTTCGAACGGAAATCCATATAAT 57.553 30.769 0.00 0.00 33.34 1.28
3162 3170 4.843728 TGTTCTTATTTTCGGGCTGAGAT 58.156 39.130 0.00 0.00 0.00 2.75
3171 3179 7.456253 AGTCATTGACGATGTTCTTATTTTCG 58.544 34.615 11.01 0.00 37.67 3.46
3377 3385 2.297033 ACCACAAGCTAATGCAAACCAG 59.703 45.455 0.00 0.00 42.74 4.00
3397 3405 8.515414 GGCTTATAAATTTGTATCATGGAGGAC 58.485 37.037 0.00 0.00 0.00 3.85
3417 3425 6.719370 TCACATCTAAACAAAAGTGGGCTTAT 59.281 34.615 0.00 0.00 33.95 1.73
3446 3454 7.152645 TCTAGATAATGGACTTGGATTAACGC 58.847 38.462 0.00 0.00 0.00 4.84
3499 3507 0.389948 AAGAGTCGAACACATCCGCC 60.390 55.000 0.00 0.00 0.00 6.13
3583 3591 2.408565 AGACCTGACCAGAAAGTTGGA 58.591 47.619 0.00 0.00 40.87 3.53
3602 3610 4.836125 AATAAGCCATGGCACGATTAAG 57.164 40.909 37.18 0.00 44.88 1.85
3656 3664 1.001764 CAGGAGCATTGGTGGCAGA 60.002 57.895 0.00 0.00 0.00 4.26
3663 3671 1.813513 ACGACTTTCAGGAGCATTGG 58.186 50.000 0.00 0.00 0.00 3.16
3751 3759 5.791336 ATGGTCGTTAGCATGATTAGAGA 57.209 39.130 0.00 0.00 42.17 3.10
3752 3760 6.851222 AAATGGTCGTTAGCATGATTAGAG 57.149 37.500 0.00 0.00 42.93 2.43
3781 3789 3.381045 GTGTTTAAGAGCAAACTTGGCC 58.619 45.455 0.00 0.00 38.85 5.36
3788 3796 4.339814 ACCAATTCCGTGTTTAAGAGCAAA 59.660 37.500 0.00 0.00 0.00 3.68
3832 3842 2.238144 AGGGGATGCTATCGAATCATGG 59.762 50.000 0.00 0.00 0.00 3.66
3834 3844 4.647564 AAAGGGGATGCTATCGAATCAT 57.352 40.909 0.00 0.00 0.00 2.45
3843 3853 9.569074 TTTATAGGACATATAAAGGGGATGCTA 57.431 33.333 7.96 0.00 40.06 3.49
3926 3936 8.219546 TGAGACATCACAAAGTCAACAATTTA 57.780 30.769 0.00 0.00 37.23 1.40
3928 3938 6.319658 ACTGAGACATCACAAAGTCAACAATT 59.680 34.615 0.00 0.00 37.23 2.32
3937 3947 2.497138 TGGCACTGAGACATCACAAAG 58.503 47.619 0.00 0.00 0.00 2.77
4021 4034 7.106239 TCTAAGCTTCAACCCAGAAGAATAAG 58.894 38.462 0.00 0.00 46.18 1.73
4135 4149 3.443045 CTGTTGGGCGGGCATCAC 61.443 66.667 3.27 0.00 0.00 3.06
4144 4158 1.336755 TCGAAGAAAAAGCTGTTGGGC 59.663 47.619 0.00 0.00 0.00 5.36
4181 4195 4.659111 AACCGACATCGATGTACCATTA 57.341 40.909 30.04 0.00 41.95 1.90
4191 4205 1.956297 ACCAAACAAACCGACATCGA 58.044 45.000 2.09 0.00 43.02 3.59
4192 4206 3.433957 TGATACCAAACAAACCGACATCG 59.566 43.478 0.00 0.00 39.44 3.84
4231 4245 9.647797 TCTAATGTGCTTTTCTAACGATTAAGA 57.352 29.630 0.00 0.00 0.00 2.10
4238 4252 9.779237 CGTATATTCTAATGTGCTTTTCTAACG 57.221 33.333 0.00 0.00 0.00 3.18
4328 4380 4.045636 AGATCGTTTTGCAAGCTGTTTT 57.954 36.364 0.00 0.00 0.00 2.43
4329 4381 3.715628 AGATCGTTTTGCAAGCTGTTT 57.284 38.095 0.00 0.00 0.00 2.83
4330 4382 3.715628 AAGATCGTTTTGCAAGCTGTT 57.284 38.095 0.00 0.00 0.00 3.16
4331 4383 6.683974 ATATAAGATCGTTTTGCAAGCTGT 57.316 33.333 0.00 0.00 0.00 4.40
4332 4384 9.110617 CATAATATAAGATCGTTTTGCAAGCTG 57.889 33.333 0.00 0.00 0.00 4.24
4549 4601 1.001887 GGTTATTGGTGCCACCGGA 60.002 57.895 9.46 0.22 42.58 5.14
4551 4603 1.663695 CTAGGTTATTGGTGCCACCG 58.336 55.000 9.78 0.00 42.58 4.94
4554 4606 2.889170 TTGCTAGGTTATTGGTGCCA 57.111 45.000 0.00 0.00 0.00 4.92
4593 4645 9.953565 AAACAGTATGATGTTAGCCTTAACTTA 57.046 29.630 0.00 0.00 42.49 2.24
4641 4693 8.408043 AATCAAAACACCATCTCATAAGAACA 57.592 30.769 0.00 0.00 34.49 3.18
4673 4725 9.806203 CTGGCACATCTGATAAATTAAATGAAA 57.194 29.630 0.00 0.00 38.20 2.69
4803 4855 4.056050 AGTTTGGAGTTGTACTACTTGCG 58.944 43.478 11.32 0.00 27.92 4.85
4811 4863 3.450578 TGTGACGAGTTTGGAGTTGTAC 58.549 45.455 0.00 0.00 0.00 2.90
4886 4938 6.832900 TGAATATTCAGAACCATGTAATGCCA 59.167 34.615 14.23 0.00 36.42 4.92
4905 4957 5.871524 CCGAGCAGCATGTAATACTGAATAT 59.128 40.000 0.00 0.00 40.22 1.28
4906 4958 5.010617 TCCGAGCAGCATGTAATACTGAATA 59.989 40.000 0.00 0.00 40.22 1.75
5004 5056 5.133221 GGGAAATATGCACCACTCAGTAAT 58.867 41.667 0.00 0.00 0.00 1.89
5021 5073 2.435805 TGATCTAGAAGCTGCGGGAAAT 59.564 45.455 0.00 0.00 0.00 2.17
5022 5074 1.831106 TGATCTAGAAGCTGCGGGAAA 59.169 47.619 0.00 0.00 0.00 3.13
5156 5208 7.094205 TGCTTCTTCCCAATTCATTTCTAACTC 60.094 37.037 0.00 0.00 0.00 3.01
5195 5247 3.132111 GGTTTTTGAAGAAGGAACTGCCA 59.868 43.478 0.00 0.00 40.86 4.92
5237 5289 7.066525 TGTTTTACAGGACAAAGGAAAGTAGTG 59.933 37.037 0.00 0.00 0.00 2.74
5246 5298 6.257630 CCAAATTGTGTTTTACAGGACAAAGG 59.742 38.462 0.00 0.00 41.10 3.11
5262 5314 0.309302 TTCGACACGGCCAAATTGTG 59.691 50.000 2.24 4.66 39.47 3.33
5274 5326 7.166970 TGAGCAGATTAATTACGTATTCGACAC 59.833 37.037 0.00 0.00 40.62 3.67
5403 5455 2.747396 TTTGCCATGCAGATTTGGAC 57.253 45.000 8.28 0.64 40.61 4.02
5499 5551 2.236146 TCAGAACCGAAGCACACCATAT 59.764 45.455 0.00 0.00 0.00 1.78
5500 5552 1.621317 TCAGAACCGAAGCACACCATA 59.379 47.619 0.00 0.00 0.00 2.74
5615 5675 5.118286 CCTCATTTGTTTTCTGCAGGTTTT 58.882 37.500 15.13 0.00 0.00 2.43
5657 5717 6.638610 TGCCTAGAGAAGAGAAATCAAGAAG 58.361 40.000 0.00 0.00 0.00 2.85
5659 5719 6.611613 TTGCCTAGAGAAGAGAAATCAAGA 57.388 37.500 0.00 0.00 0.00 3.02
5710 5770 2.158900 TGAGGCTTAGATTGCAGGTAGC 60.159 50.000 0.00 0.00 45.96 3.58
5721 5781 3.435313 GGGCTACTCTACTGAGGCTTAGA 60.435 52.174 13.85 3.78 44.29 2.10
5790 5851 4.563993 CCATTGTTCAGCACCAAATTCCAT 60.564 41.667 0.00 0.00 0.00 3.41
5828 5889 4.104383 ACCAATGAACAACCTGTGAGAT 57.896 40.909 0.00 0.00 0.00 2.75
5930 5991 1.735376 ATTCAGATCGTCCGGTCCCG 61.735 60.000 0.00 2.65 39.44 5.14
6052 6113 5.248477 TGGTTAGCTTCTACCAAGAGTCAAT 59.752 40.000 11.36 0.00 41.30 2.57
6081 6142 0.751643 CATTACCAGGGCCGGAAAGG 60.752 60.000 19.10 2.88 44.97 3.11
6083 6144 1.208844 TCCATTACCAGGGCCGGAAA 61.209 55.000 19.10 7.52 0.00 3.13
6097 6158 9.962783 GATACGTTATCTACACTTAGTTCCATT 57.037 33.333 0.00 0.00 32.44 3.16
6255 6317 6.095860 CAGATTGAATAAAAGTGCCATGAGGA 59.904 38.462 0.00 0.00 36.89 3.71
6296 6358 9.424319 AGTTTCTTGTTATGACATGTACTACTG 57.576 33.333 0.00 0.00 35.29 2.74
6308 6370 4.565652 GGAGCTCCCAGTTTCTTGTTATGA 60.566 45.833 23.19 0.00 34.14 2.15
6366 6428 6.206180 AGCATATTATCTTGCTAGGGGTTT 57.794 37.500 1.42 0.00 46.92 3.27
6394 6468 4.499696 CGATTTCATTTAGGCATTGTCCCC 60.500 45.833 0.00 0.00 0.00 4.81
6418 6492 7.118390 GCTTACATTTAGCTCATGGTATACCAG 59.882 40.741 27.83 19.41 41.39 4.00
6419 6493 6.934645 GCTTACATTTAGCTCATGGTATACCA 59.065 38.462 26.54 26.54 41.87 3.25
6420 6494 6.934645 TGCTTACATTTAGCTCATGGTATACC 59.065 38.462 15.50 15.50 39.38 2.73
6421 6495 7.962964 TGCTTACATTTAGCTCATGGTATAC 57.037 36.000 9.94 0.00 39.38 1.47
6422 6496 9.219603 GAATGCTTACATTTAGCTCATGGTATA 57.780 33.333 9.94 0.00 46.59 1.47
6423 6497 7.941238 AGAATGCTTACATTTAGCTCATGGTAT 59.059 33.333 9.94 0.00 46.59 2.73
6424 6498 7.227314 CAGAATGCTTACATTTAGCTCATGGTA 59.773 37.037 9.94 0.00 46.59 3.25
6425 6499 6.039047 CAGAATGCTTACATTTAGCTCATGGT 59.961 38.462 9.94 0.00 46.59 3.55
6426 6500 6.436261 CAGAATGCTTACATTTAGCTCATGG 58.564 40.000 9.94 0.00 46.59 3.66
6446 6522 1.317613 ATGCGACAGTTTTGGCAGAA 58.682 45.000 0.00 0.00 39.00 3.02
6448 6524 2.414559 CCTTATGCGACAGTTTTGGCAG 60.415 50.000 0.00 0.00 39.00 4.85
6460 6536 5.545063 TGAAATATGGAGTCCTTATGCGA 57.455 39.130 16.27 3.19 0.00 5.10
6461 6537 6.652481 AGATTGAAATATGGAGTCCTTATGCG 59.348 38.462 16.27 0.00 0.00 4.73
6499 6575 2.050836 TTGCCTGGAGCTGGTCGAAA 62.051 55.000 0.00 0.00 44.23 3.46
6520 6596 1.448540 CGCCCGAACTGCAGAATCT 60.449 57.895 23.35 0.91 0.00 2.40
6537 6694 8.017946 TCAGAATCTCGATCATACTATCAAACG 58.982 37.037 0.00 0.00 0.00 3.60
6544 6701 5.126222 GGGCATCAGAATCTCGATCATACTA 59.874 44.000 0.00 0.00 0.00 1.82
6594 6751 3.427909 GGCGTGATCATTGCAATTCTTCA 60.428 43.478 20.30 10.09 0.00 3.02
6613 6770 0.677731 TCTTTTGATGCTGGAGGGCG 60.678 55.000 0.00 0.00 34.52 6.13
6621 6778 5.717078 TGATGCTTCTTTCTTTTGATGCT 57.283 34.783 0.88 0.00 35.34 3.79
6622 6779 6.963049 ATTGATGCTTCTTTCTTTTGATGC 57.037 33.333 0.88 0.00 35.02 3.91
6655 6812 3.784511 AACCTCCTCCGAGATCGTATA 57.215 47.619 0.00 0.00 38.52 1.47
6665 6822 0.811281 GATGGCAAAAACCTCCTCCG 59.189 55.000 0.00 0.00 0.00 4.63
6677 6834 1.888512 GTTCCTGAAGCAAGATGGCAA 59.111 47.619 0.00 0.00 35.83 4.52
6690 6847 1.837051 AGACTGCACCCGTTCCTGA 60.837 57.895 0.00 0.00 0.00 3.86
6703 6860 0.179116 CATGCCTCTCGTCCAGACTG 60.179 60.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.