Multiple sequence alignment - TraesCS5B01G101300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G101300 chr5B 100.000 6527 0 0 1 6527 134142328 134135802 0.000000e+00 12054.0
1 TraesCS5B01G101300 chr5B 95.775 71 1 2 6458 6527 217632951 217632882 5.350000e-21 113.0
2 TraesCS5B01G101300 chr5B 95.652 69 2 1 6460 6527 37505246 37505178 6.920000e-20 110.0
3 TraesCS5B01G101300 chr5B 94.030 67 3 1 6462 6527 476058569 476058503 4.160000e-17 100.0
4 TraesCS5B01G101300 chr5D 96.764 4666 119 12 15 4669 121093300 121088656 0.000000e+00 7751.0
5 TraesCS5B01G101300 chr5D 94.472 814 38 6 4704 5515 121088364 121087556 0.000000e+00 1247.0
6 TraesCS5B01G101300 chr5D 88.136 708 46 17 5764 6465 121087515 121086840 0.000000e+00 808.0
7 TraesCS5B01G101300 chr5D 89.103 156 14 3 257 410 559597238 559597392 2.400000e-44 191.0
8 TraesCS5B01G101300 chr5D 84.409 186 22 7 241 422 492528373 492528555 6.730000e-40 176.0
9 TraesCS5B01G101300 chr5D 91.803 122 7 3 5572 5691 460657197 460657077 4.050000e-37 167.0
10 TraesCS5B01G101300 chr5D 86.400 125 15 2 5572 5695 434052106 434051983 1.140000e-27 135.0
11 TraesCS5B01G101300 chr5D 89.394 66 6 1 6462 6527 556450204 556450268 1.510000e-11 82.4
12 TraesCS5B01G101300 chr5A 95.241 4728 169 17 828 5519 132105857 132101150 0.000000e+00 7433.0
13 TraesCS5B01G101300 chr5A 88.784 847 84 5 2 837 132108668 132107822 0.000000e+00 1027.0
14 TraesCS5B01G101300 chr5A 89.908 545 35 11 5939 6465 132100893 132100351 0.000000e+00 684.0
15 TraesCS5B01G101300 chr5A 94.030 67 2 2 6462 6527 394266928 394266993 4.160000e-17 100.0
16 TraesCS5B01G101300 chr4A 93.798 258 16 0 1 258 608305705 608305448 7.940000e-104 388.0
17 TraesCS5B01G101300 chr4A 87.273 165 17 4 252 414 106895979 106896141 1.120000e-42 185.0
18 TraesCS5B01G101300 chr4A 86.538 52 4 3 5819 5867 684519998 684520049 3.000000e-03 54.7
19 TraesCS5B01G101300 chr2D 93.023 258 18 0 1 258 6228020 6227763 1.720000e-100 377.0
20 TraesCS5B01G101300 chr2D 92.664 259 18 1 1 258 174080153 174080411 7.990000e-99 372.0
21 TraesCS5B01G101300 chr2D 100.000 30 0 0 740 769 546220500 546220529 1.000000e-03 56.5
22 TraesCS5B01G101300 chr2B 92.636 258 19 0 1 258 386092623 386092880 7.990000e-99 372.0
23 TraesCS5B01G101300 chr2B 90.714 140 12 1 257 395 193308741 193308880 1.120000e-42 185.0
24 TraesCS5B01G101300 chr2B 89.256 121 11 2 5572 5691 146719717 146719836 4.080000e-32 150.0
25 TraesCS5B01G101300 chr2B 94.366 71 1 3 6458 6527 790879165 790879097 8.950000e-19 106.0
26 TraesCS5B01G101300 chr3A 92.308 260 20 0 1 260 121086493 121086752 2.870000e-98 370.0
27 TraesCS5B01G101300 chr3A 95.522 67 2 1 6462 6527 704458523 704458457 8.950000e-19 106.0
28 TraesCS5B01G101300 chr3A 94.203 69 3 1 6460 6527 80491056 80491124 3.220000e-18 104.0
29 TraesCS5B01G101300 chr3A 92.958 71 4 1 6457 6527 38055989 38056058 1.160000e-17 102.0
30 TraesCS5B01G101300 chr7D 92.578 256 19 0 3 258 375390608 375390863 1.030000e-97 368.0
31 TraesCS5B01G101300 chr7D 88.312 77 8 1 5572 5647 638175992 638175916 2.510000e-14 91.6
32 TraesCS5B01G101300 chr6D 92.248 258 20 0 1 258 334368972 334369229 3.720000e-97 366.0
33 TraesCS5B01G101300 chr6D 82.637 311 46 8 2225 2529 83544409 83544101 1.080000e-67 268.0
34 TraesCS5B01G101300 chr6D 83.571 140 16 5 2404 2536 84029589 84029450 2.470000e-24 124.0
35 TraesCS5B01G101300 chr6B 81.518 303 45 8 2231 2529 159598303 159598008 8.460000e-59 239.0
36 TraesCS5B01G101300 chr6B 83.770 191 30 1 2340 2529 159405813 159405623 5.200000e-41 180.0
37 TraesCS5B01G101300 chr6B 83.420 193 30 2 2343 2533 158146596 158146788 1.870000e-40 178.0
38 TraesCS5B01G101300 chr6B 94.203 69 3 1 6460 6527 21082077 21082009 3.220000e-18 104.0
39 TraesCS5B01G101300 chr7B 89.024 164 18 0 2310 2473 66198316 66198479 3.090000e-48 204.0
40 TraesCS5B01G101300 chr7B 92.754 69 4 1 6460 6527 610025720 610025788 1.500000e-16 99.0
41 TraesCS5B01G101300 chr3B 89.634 164 11 5 258 418 333472450 333472610 3.090000e-48 204.0
42 TraesCS5B01G101300 chr3B 89.172 157 14 3 256 410 16312455 16312300 6.680000e-45 193.0
43 TraesCS5B01G101300 chr4B 89.103 156 15 2 257 410 68339001 68339156 6.680000e-45 193.0
44 TraesCS5B01G101300 chr4B 92.958 71 3 2 6458 6527 666752835 666752766 1.160000e-17 102.0
45 TraesCS5B01G101300 chr4B 89.041 73 5 3 6457 6527 624138929 624139000 3.240000e-13 87.9
46 TraesCS5B01G101300 chr4B 91.489 47 3 1 6465 6510 452727121 452727075 5.460000e-06 63.9
47 TraesCS5B01G101300 chr3D 87.395 119 14 1 5574 5691 431318645 431318763 1.140000e-27 135.0
48 TraesCS5B01G101300 chr6A 87.963 108 9 1 2343 2450 100182152 100182255 2.470000e-24 124.0
49 TraesCS5B01G101300 chr6A 95.652 69 2 1 6460 6527 17441461 17441529 6.920000e-20 110.0
50 TraesCS5B01G101300 chr6A 92.857 70 2 3 6460 6527 259751785 259751853 1.500000e-16 99.0
51 TraesCS5B01G101300 chr6A 92.424 66 4 1 6462 6526 22176506 22176441 6.970000e-15 93.5
52 TraesCS5B01G101300 chrUn 97.059 68 2 0 6460 6527 123976594 123976527 1.490000e-21 115.0
53 TraesCS5B01G101300 chr1A 95.652 69 2 1 6460 6527 28896203 28896135 6.920000e-20 110.0
54 TraesCS5B01G101300 chr1A 91.429 70 5 1 6458 6527 443662095 443662163 1.940000e-15 95.3
55 TraesCS5B01G101300 chr2A 95.522 67 2 1 6462 6527 750532869 750532935 8.950000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G101300 chr5B 134135802 134142328 6526 True 12054.000000 12054 100.000 1 6527 1 chr5B.!!$R2 6526
1 TraesCS5B01G101300 chr5D 121086840 121093300 6460 True 3268.666667 7751 93.124 15 6465 3 chr5D.!!$R3 6450
2 TraesCS5B01G101300 chr5A 132100351 132108668 8317 True 3048.000000 7433 91.311 2 6465 3 chr5A.!!$R1 6463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.032815 TCACACGGAGCGACAAATCA 59.967 50.000 0.00 0.00 0.00 2.57 F
1615 3602 1.424302 AGGAGGATGATCCAAGGCATG 59.576 52.381 14.90 0.00 42.26 4.06 F
2632 4621 0.242017 CCTAACAACAAGCTGCTGCC 59.758 55.000 12.44 0.00 40.80 4.85 F
3779 5774 0.529378 GCACCCAAGGCTTGAATCTG 59.471 55.000 28.18 16.47 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 3669 0.521867 CGCACAATCACATTCGCAGG 60.522 55.000 0.00 0.00 0.00 4.85 R
3039 5028 1.143183 CAAGCAATCATGGGCCAGC 59.857 57.895 13.78 9.76 0.00 4.85 R
3833 5828 1.271379 ACGGAAATCCAGTCCAACCAG 60.271 52.381 0.00 0.00 34.56 4.00 R
5618 7899 0.108898 CAGGGTCAAGTCTCTGCTCG 60.109 60.000 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.364023 CGTTACTGGCAAGTCTCTTTACG 59.636 47.826 0.00 0.00 37.88 3.18
68 69 1.591619 GCGTTCCGTAATACAAGAGCC 59.408 52.381 0.00 0.00 0.00 4.70
104 105 7.547370 ACTCATTAGTCACATGAAGCTTCTTAC 59.453 37.037 26.09 14.99 30.12 2.34
118 119 8.033038 TGAAGCTTCTTACGATGTTGTATTACT 58.967 33.333 26.09 0.00 0.00 2.24
135 136 2.363018 TGAGAGGGCCCAGAGACG 60.363 66.667 27.56 0.00 0.00 4.18
163 164 0.032815 TCACACGGAGCGACAAATCA 59.967 50.000 0.00 0.00 0.00 2.57
216 217 4.832266 CCTTCAGAGATACCTGTAGAGCAT 59.168 45.833 0.00 0.00 34.68 3.79
236 237 8.345724 GAGCATCTTTATGATCACCCAATTAT 57.654 34.615 0.00 0.00 45.81 1.28
244 245 9.645128 TTTATGATCACCCAATTATGAAGTGAT 57.355 29.630 0.00 3.75 45.29 3.06
258 259 8.510243 TTATGAAGTGATGTTTGATAGCACAT 57.490 30.769 0.00 0.00 36.28 3.21
276 277 5.294552 AGCACATACCGAGAGCTTTTATTTC 59.705 40.000 0.00 0.00 29.98 2.17
319 320 5.700832 TGATAGTTCTGCTGAAAACATCGTT 59.299 36.000 7.68 0.00 33.52 3.85
321 322 3.876914 AGTTCTGCTGAAAACATCGTTGA 59.123 39.130 7.68 0.00 33.52 3.18
323 324 5.009010 AGTTCTGCTGAAAACATCGTTGATT 59.991 36.000 7.68 0.00 33.52 2.57
377 379 4.747810 AGTCCAAAACAAGAGCAAAAGTG 58.252 39.130 0.00 0.00 0.00 3.16
395 397 9.255304 GCAAAAGTGTTTGGAAAAATAGATACA 57.745 29.630 1.72 0.00 43.73 2.29
420 422 4.421058 TGAGACGTATCATGTAACACTGC 58.579 43.478 9.19 0.00 0.00 4.40
534 536 2.958578 ATATGGGCGAAAGGGTGCGG 62.959 60.000 0.00 0.00 0.00 5.69
582 592 5.279607 CCCCATGTCTCAAATGTTGTTGAAT 60.280 40.000 0.00 0.00 37.08 2.57
584 594 6.707161 CCCATGTCTCAAATGTTGTTGAATTT 59.293 34.615 0.00 0.00 37.08 1.82
586 596 8.614346 CCATGTCTCAAATGTTGTTGAATTTTT 58.386 29.630 0.00 0.00 37.08 1.94
790 802 1.808411 TCAGTCCATCAAGTTTCGCC 58.192 50.000 0.00 0.00 0.00 5.54
816 828 7.012894 CACCTAAACTTGGTACTGAACATTTGA 59.987 37.037 0.00 0.00 35.80 2.69
1255 3241 5.113383 TCGTGATGTATTGGTGGTAATGTC 58.887 41.667 0.00 0.00 0.00 3.06
1607 3594 3.559069 TGCAATTTGAGGAGGATGATCC 58.441 45.455 2.46 2.46 39.89 3.36
1615 3602 1.424302 AGGAGGATGATCCAAGGCATG 59.576 52.381 14.90 0.00 42.26 4.06
1654 3641 7.986320 CCCATTTTGATATTGCAACAGGAAATA 59.014 33.333 0.00 0.00 0.00 1.40
1682 3669 4.557301 GTGTAGTTTTTGCTGTGTGTTCAC 59.443 41.667 0.00 0.00 44.08 3.18
1687 3674 1.713937 TTGCTGTGTGTTCACCTGCG 61.714 55.000 0.37 0.00 43.26 5.18
1701 3688 0.521867 CCTGCGAATGTGATTGTGCG 60.522 55.000 0.00 0.00 0.00 5.34
1895 3883 5.418310 TTTCTTGTGTGGTCGAGAAATTC 57.582 39.130 5.37 0.00 40.65 2.17
1924 3912 7.445121 TGCCTCTTATGAACCATACATTCTAG 58.555 38.462 0.00 0.00 0.00 2.43
2013 4001 9.006839 ACATGACCATAGTTATATGCAATTGAG 57.993 33.333 10.34 0.00 37.97 3.02
2034 4022 4.270008 AGGGGAAAATGATTTAGTCCACG 58.730 43.478 10.00 0.00 0.00 4.94
2085 4073 1.067060 GCTCTGAAAAACCACCACCAC 59.933 52.381 0.00 0.00 0.00 4.16
2090 4078 3.492337 TGAAAAACCACCACCACTATCC 58.508 45.455 0.00 0.00 0.00 2.59
2165 4153 5.471556 TGTTCATTTCCTACTACCAACGA 57.528 39.130 0.00 0.00 0.00 3.85
2243 4231 5.702670 CGACTTATGTATGATTCAGGCCATT 59.297 40.000 5.01 0.00 0.00 3.16
2436 4424 1.470098 CTTGACCTGCTTGAAATCCCG 59.530 52.381 0.00 0.00 0.00 5.14
2478 4466 5.299028 TGTGACATGCATTGTTAGTGTTTCT 59.701 36.000 0.00 0.00 39.18 2.52
2481 4469 6.917477 TGACATGCATTGTTAGTGTTTCTTTC 59.083 34.615 0.00 0.00 39.18 2.62
2632 4621 0.242017 CCTAACAACAAGCTGCTGCC 59.758 55.000 12.44 0.00 40.80 4.85
2934 4923 9.423061 GTCAAGCACCATTTTCATATTTTACTT 57.577 29.630 0.00 0.00 0.00 2.24
3042 5031 9.276590 TCCTTGTATTCAATAGTATCATTGCTG 57.723 33.333 0.00 0.00 36.13 4.41
3048 5037 4.084287 CAATAGTATCATTGCTGGCCCAT 58.916 43.478 0.00 0.00 0.00 4.00
3076 5065 7.888250 TGCTTGATCTGTCTAATCTCTTCTA 57.112 36.000 0.00 0.00 0.00 2.10
3093 5082 7.763356 TCTCTTCTACACACTTGTATCTAAGC 58.237 38.462 0.00 0.00 37.58 3.09
3265 5254 8.946085 GTATTTGTTTCTGGTTATCATGTCTCA 58.054 33.333 0.00 0.00 0.00 3.27
3779 5774 0.529378 GCACCCAAGGCTTGAATCTG 59.471 55.000 28.18 16.47 0.00 2.90
3833 5828 3.134127 GTGCGATGGGTCTTGGCC 61.134 66.667 0.00 0.00 0.00 5.36
4050 6046 3.674997 ACGTGTTTGGACATGCTATTCT 58.325 40.909 0.00 0.00 44.87 2.40
4421 6417 1.071699 ACGTGTTGGCTCTAATGGTGT 59.928 47.619 0.00 0.00 0.00 4.16
4447 6443 7.233389 AGTGAGTATACAAGTTGACATGTCT 57.767 36.000 25.55 7.77 0.00 3.41
4448 6444 8.349568 AGTGAGTATACAAGTTGACATGTCTA 57.650 34.615 25.55 16.43 0.00 2.59
4506 6505 4.081406 TGAATGAGCTAAAACCATGTGCT 58.919 39.130 0.00 0.00 36.63 4.40
4572 6571 5.012561 AGGATTACAAGCAGTTTCTGACTCT 59.987 40.000 0.66 0.00 36.10 3.24
4578 6577 4.782019 AGCAGTTTCTGACTCTCTAGTG 57.218 45.455 0.66 0.00 36.10 2.74
4641 6640 2.958355 CCTTTTCCTCTCACTTTGCCAA 59.042 45.455 0.00 0.00 0.00 4.52
4791 7048 7.391554 TCCAGTTCTGTGATATTTCTCTTTTGG 59.608 37.037 0.00 0.00 0.00 3.28
4818 7075 9.179552 CTCAGAGAAGTCTCATATGTAAATTCG 57.820 37.037 10.83 0.00 45.21 3.34
4946 7203 5.304614 TGTCAGCCAACTACCTATAAGATCC 59.695 44.000 0.00 0.00 0.00 3.36
4952 7209 5.458891 CAACTACCTATAAGATCCGGTTCG 58.541 45.833 0.00 0.00 0.00 3.95
4976 7233 4.282950 GATCAGCAGCATTGATCGAAAA 57.717 40.909 8.48 0.00 40.90 2.29
4988 7245 0.974383 ATCGAAAACCGTCAGGAGGT 59.026 50.000 0.00 0.00 45.29 3.85
5015 7272 0.463474 GAAGGCAGTCTGGAGGCATC 60.463 60.000 1.14 0.00 0.00 3.91
5226 7507 0.321298 AAACGCATAGCCTGAACCGT 60.321 50.000 0.00 0.00 0.00 4.83
5256 7537 6.464222 TGGAATCTGTCGAAGTTCTTGTTAT 58.536 36.000 0.56 0.00 0.00 1.89
5389 7670 7.385752 ACACAATTGGAAATTTAGCTGTTCATG 59.614 33.333 10.83 0.00 0.00 3.07
5411 7692 5.379187 TGTCTAGCCCATACGTAGATGTTA 58.621 41.667 0.08 0.00 0.00 2.41
5421 7702 6.149973 CCATACGTAGATGTTATAGACCGGAA 59.850 42.308 9.46 0.00 0.00 4.30
5482 7763 3.494626 AGTGCTCTATGTTGTTGTTGACG 59.505 43.478 0.00 0.00 0.00 4.35
5505 7786 3.198068 CACATCTGGTAATGAAGGTCGG 58.802 50.000 0.00 0.00 0.00 4.79
5516 7797 1.827399 GAAGGTCGGACTGGAAGCCA 61.827 60.000 8.23 0.00 37.60 4.75
5519 7800 3.319198 TCGGACTGGAAGCCACCC 61.319 66.667 0.00 0.00 37.60 4.61
5520 7801 3.322466 CGGACTGGAAGCCACCCT 61.322 66.667 0.00 0.00 37.60 4.34
5521 7802 2.895424 CGGACTGGAAGCCACCCTT 61.895 63.158 0.00 0.00 37.60 3.95
5522 7803 1.550130 CGGACTGGAAGCCACCCTTA 61.550 60.000 0.00 0.00 37.60 2.69
5523 7804 0.253327 GGACTGGAAGCCACCCTTAG 59.747 60.000 0.00 0.00 37.60 2.18
5524 7805 0.393132 GACTGGAAGCCACCCTTAGC 60.393 60.000 0.00 0.00 37.60 3.09
5525 7806 1.077429 CTGGAAGCCACCCTTAGCC 60.077 63.158 0.00 0.00 32.78 3.93
5526 7807 1.541368 TGGAAGCCACCCTTAGCCT 60.541 57.895 0.00 0.00 32.78 4.58
5527 7808 0.252974 TGGAAGCCACCCTTAGCCTA 60.253 55.000 0.00 0.00 32.78 3.93
5528 7809 1.141185 GGAAGCCACCCTTAGCCTAT 58.859 55.000 0.00 0.00 32.78 2.57
5529 7810 1.072489 GGAAGCCACCCTTAGCCTATC 59.928 57.143 0.00 0.00 32.78 2.08
5607 7888 6.963049 TTTATAGAAGAAAACTCCGTGAGC 57.037 37.500 1.36 0.00 32.04 4.26
5608 7889 2.910688 AGAAGAAAACTCCGTGAGCA 57.089 45.000 1.36 0.00 32.04 4.26
5609 7890 3.409026 AGAAGAAAACTCCGTGAGCAT 57.591 42.857 1.36 0.00 32.04 3.79
5610 7891 3.330267 AGAAGAAAACTCCGTGAGCATC 58.670 45.455 1.36 0.00 32.04 3.91
5622 7903 1.346538 GAGCATCAAACGCTCGAGC 59.653 57.895 27.64 27.64 45.82 5.03
5623 7904 1.354337 GAGCATCAAACGCTCGAGCA 61.354 55.000 34.69 17.25 45.82 4.26
5624 7905 1.059994 GCATCAAACGCTCGAGCAG 59.940 57.895 34.69 27.69 42.21 4.24
5625 7906 1.354337 GCATCAAACGCTCGAGCAGA 61.354 55.000 34.69 25.21 42.21 4.26
5635 7916 2.268022 TCGAGCAGAGACTTGACCC 58.732 57.895 0.00 0.00 0.00 4.46
5636 7917 0.251386 TCGAGCAGAGACTTGACCCT 60.251 55.000 0.00 0.00 0.00 4.34
5637 7918 0.108898 CGAGCAGAGACTTGACCCTG 60.109 60.000 0.00 0.00 0.00 4.45
5638 7919 0.248843 GAGCAGAGACTTGACCCTGG 59.751 60.000 0.00 0.00 0.00 4.45
5639 7920 0.472734 AGCAGAGACTTGACCCTGGT 60.473 55.000 0.00 0.00 33.17 4.00
5640 7921 0.321122 GCAGAGACTTGACCCTGGTG 60.321 60.000 0.00 0.00 0.00 4.17
5641 7922 0.322975 CAGAGACTTGACCCTGGTGG 59.677 60.000 0.00 0.00 41.37 4.61
5651 7932 2.194056 CCTGGTGGGCTGGCTATG 59.806 66.667 0.00 0.00 0.00 2.23
5652 7933 2.377810 CCTGGTGGGCTGGCTATGA 61.378 63.158 0.00 0.00 0.00 2.15
5653 7934 1.609239 CTGGTGGGCTGGCTATGAA 59.391 57.895 0.00 0.00 0.00 2.57
5654 7935 0.749454 CTGGTGGGCTGGCTATGAAC 60.749 60.000 0.00 0.00 0.00 3.18
5655 7936 1.207488 TGGTGGGCTGGCTATGAACT 61.207 55.000 0.00 0.00 0.00 3.01
5656 7937 0.464554 GGTGGGCTGGCTATGAACTC 60.465 60.000 0.00 0.00 0.00 3.01
5657 7938 0.464554 GTGGGCTGGCTATGAACTCC 60.465 60.000 0.00 0.00 0.00 3.85
5658 7939 1.149401 GGGCTGGCTATGAACTCCC 59.851 63.158 0.00 0.00 0.00 4.30
5659 7940 1.227674 GGCTGGCTATGAACTCCCG 60.228 63.158 0.00 0.00 0.00 5.14
5660 7941 1.889573 GCTGGCTATGAACTCCCGC 60.890 63.158 0.00 0.00 0.00 6.13
5661 7942 1.592669 CTGGCTATGAACTCCCGCG 60.593 63.158 0.00 0.00 0.00 6.46
5662 7943 2.967615 GGCTATGAACTCCCGCGC 60.968 66.667 0.00 0.00 0.00 6.86
5663 7944 2.967615 GCTATGAACTCCCGCGCC 60.968 66.667 0.00 0.00 0.00 6.53
5664 7945 2.815308 CTATGAACTCCCGCGCCT 59.185 61.111 0.00 0.00 0.00 5.52
5665 7946 1.144057 CTATGAACTCCCGCGCCTT 59.856 57.895 0.00 0.00 0.00 4.35
5666 7947 1.153449 TATGAACTCCCGCGCCTTG 60.153 57.895 0.00 0.00 0.00 3.61
5675 7956 4.688419 CGCGCCTTGCCAACTGTG 62.688 66.667 0.00 0.00 42.08 3.66
5677 7958 3.289834 CGCCTTGCCAACTGTGCT 61.290 61.111 0.00 0.00 0.00 4.40
5678 7959 1.965930 CGCCTTGCCAACTGTGCTA 60.966 57.895 0.00 0.00 0.00 3.49
5679 7960 1.581447 GCCTTGCCAACTGTGCTAC 59.419 57.895 0.00 0.00 0.00 3.58
5680 7961 1.172180 GCCTTGCCAACTGTGCTACA 61.172 55.000 0.00 0.00 0.00 2.74
5681 7962 0.593128 CCTTGCCAACTGTGCTACAC 59.407 55.000 0.00 0.00 34.56 2.90
5682 7963 1.597742 CTTGCCAACTGTGCTACACT 58.402 50.000 0.00 0.00 35.11 3.55
5683 7964 1.532868 CTTGCCAACTGTGCTACACTC 59.467 52.381 0.00 0.00 35.11 3.51
5684 7965 0.467804 TGCCAACTGTGCTACACTCA 59.532 50.000 0.00 0.00 35.11 3.41
5685 7966 1.151668 GCCAACTGTGCTACACTCAG 58.848 55.000 0.00 0.00 43.94 3.35
5691 7972 3.650070 CTGTGCTACACTCAGTTCTCA 57.350 47.619 0.00 0.00 35.57 3.27
5692 7973 3.982475 CTGTGCTACACTCAGTTCTCAA 58.018 45.455 0.00 0.00 35.57 3.02
5693 7974 3.982475 TGTGCTACACTCAGTTCTCAAG 58.018 45.455 0.00 0.00 35.11 3.02
5694 7975 3.243873 TGTGCTACACTCAGTTCTCAAGG 60.244 47.826 0.00 0.00 35.11 3.61
5695 7976 2.289072 TGCTACACTCAGTTCTCAAGGC 60.289 50.000 0.00 0.00 0.00 4.35
5696 7977 2.289072 GCTACACTCAGTTCTCAAGGCA 60.289 50.000 0.00 0.00 0.00 4.75
5697 7978 3.618507 GCTACACTCAGTTCTCAAGGCAT 60.619 47.826 0.00 0.00 0.00 4.40
5698 7979 3.051081 ACACTCAGTTCTCAAGGCATC 57.949 47.619 0.00 0.00 0.00 3.91
5699 7980 2.289945 ACACTCAGTTCTCAAGGCATCC 60.290 50.000 0.00 0.00 0.00 3.51
5700 7981 1.980765 ACTCAGTTCTCAAGGCATCCA 59.019 47.619 0.00 0.00 0.00 3.41
5701 7982 2.575279 ACTCAGTTCTCAAGGCATCCAT 59.425 45.455 0.00 0.00 0.00 3.41
5702 7983 3.009916 ACTCAGTTCTCAAGGCATCCATT 59.990 43.478 0.00 0.00 0.00 3.16
5703 7984 3.614092 TCAGTTCTCAAGGCATCCATTC 58.386 45.455 0.00 0.00 0.00 2.67
5704 7985 3.009363 TCAGTTCTCAAGGCATCCATTCA 59.991 43.478 0.00 0.00 0.00 2.57
5705 7986 3.760151 CAGTTCTCAAGGCATCCATTCAA 59.240 43.478 0.00 0.00 0.00 2.69
5706 7987 4.219070 CAGTTCTCAAGGCATCCATTCAAA 59.781 41.667 0.00 0.00 0.00 2.69
5707 7988 4.834496 AGTTCTCAAGGCATCCATTCAAAA 59.166 37.500 0.00 0.00 0.00 2.44
5708 7989 5.047519 AGTTCTCAAGGCATCCATTCAAAAG 60.048 40.000 0.00 0.00 0.00 2.27
5709 7990 4.665451 TCTCAAGGCATCCATTCAAAAGA 58.335 39.130 0.00 0.00 0.00 2.52
5710 7991 4.703575 TCTCAAGGCATCCATTCAAAAGAG 59.296 41.667 0.00 0.00 0.00 2.85
5711 7992 4.410099 TCAAGGCATCCATTCAAAAGAGT 58.590 39.130 0.00 0.00 0.00 3.24
5712 7993 4.834496 TCAAGGCATCCATTCAAAAGAGTT 59.166 37.500 0.00 0.00 0.00 3.01
5713 7994 4.796038 AGGCATCCATTCAAAAGAGTTG 57.204 40.909 0.00 0.00 0.00 3.16
5714 7995 3.056322 AGGCATCCATTCAAAAGAGTTGC 60.056 43.478 0.00 0.00 0.00 4.17
5715 7996 3.256558 GCATCCATTCAAAAGAGTTGCC 58.743 45.455 0.00 0.00 0.00 4.52
5716 7997 3.056322 GCATCCATTCAAAAGAGTTGCCT 60.056 43.478 0.00 0.00 0.00 4.75
5717 7998 4.491676 CATCCATTCAAAAGAGTTGCCTG 58.508 43.478 0.00 0.00 0.00 4.85
5718 7999 2.892852 TCCATTCAAAAGAGTTGCCTGG 59.107 45.455 0.00 0.00 0.00 4.45
5719 8000 2.629617 CCATTCAAAAGAGTTGCCTGGT 59.370 45.455 0.00 0.00 0.00 4.00
5720 8001 3.070015 CCATTCAAAAGAGTTGCCTGGTT 59.930 43.478 0.00 0.00 0.00 3.67
5721 8002 4.280677 CCATTCAAAAGAGTTGCCTGGTTA 59.719 41.667 0.00 0.00 0.00 2.85
5722 8003 5.221422 CCATTCAAAAGAGTTGCCTGGTTAA 60.221 40.000 0.00 0.00 0.00 2.01
5723 8004 6.458210 CATTCAAAAGAGTTGCCTGGTTAAT 58.542 36.000 0.00 0.00 0.00 1.40
5724 8005 5.705609 TCAAAAGAGTTGCCTGGTTAATC 57.294 39.130 0.00 0.00 0.00 1.75
5725 8006 5.136828 TCAAAAGAGTTGCCTGGTTAATCA 58.863 37.500 0.00 0.00 0.00 2.57
5726 8007 5.596361 TCAAAAGAGTTGCCTGGTTAATCAA 59.404 36.000 0.00 0.00 0.00 2.57
5727 8008 6.267471 TCAAAAGAGTTGCCTGGTTAATCAAT 59.733 34.615 0.00 0.00 0.00 2.57
5728 8009 5.649782 AAGAGTTGCCTGGTTAATCAATG 57.350 39.130 0.00 0.00 0.00 2.82
5729 8010 4.922206 AGAGTTGCCTGGTTAATCAATGA 58.078 39.130 0.00 0.00 0.00 2.57
5730 8011 5.324409 AGAGTTGCCTGGTTAATCAATGAA 58.676 37.500 0.00 0.00 0.00 2.57
5731 8012 5.774690 AGAGTTGCCTGGTTAATCAATGAAA 59.225 36.000 0.00 0.00 0.00 2.69
5732 8013 6.267471 AGAGTTGCCTGGTTAATCAATGAAAA 59.733 34.615 0.00 0.00 0.00 2.29
5733 8014 6.825610 AGTTGCCTGGTTAATCAATGAAAAA 58.174 32.000 0.00 0.00 0.00 1.94
5734 8015 6.705825 AGTTGCCTGGTTAATCAATGAAAAAC 59.294 34.615 0.00 0.00 0.00 2.43
5735 8016 6.418057 TGCCTGGTTAATCAATGAAAAACT 57.582 33.333 9.79 0.00 0.00 2.66
5736 8017 6.222389 TGCCTGGTTAATCAATGAAAAACTG 58.778 36.000 9.79 4.59 0.00 3.16
5737 8018 5.639082 GCCTGGTTAATCAATGAAAAACTGG 59.361 40.000 14.22 14.22 0.00 4.00
5738 8019 5.639082 CCTGGTTAATCAATGAAAAACTGGC 59.361 40.000 8.81 0.00 0.00 4.85
5739 8020 5.546526 TGGTTAATCAATGAAAAACTGGCC 58.453 37.500 0.00 0.00 0.00 5.36
5740 8021 5.306678 TGGTTAATCAATGAAAAACTGGCCT 59.693 36.000 3.32 0.00 0.00 5.19
5741 8022 6.495181 TGGTTAATCAATGAAAAACTGGCCTA 59.505 34.615 3.32 0.00 0.00 3.93
5742 8023 6.811665 GGTTAATCAATGAAAAACTGGCCTAC 59.188 38.462 3.32 0.00 0.00 3.18
5743 8024 7.309805 GGTTAATCAATGAAAAACTGGCCTACT 60.310 37.037 3.32 0.00 0.00 2.57
5744 8025 6.670695 AATCAATGAAAAACTGGCCTACTT 57.329 33.333 3.32 0.00 0.00 2.24
5745 8026 6.670695 ATCAATGAAAAACTGGCCTACTTT 57.329 33.333 3.32 0.00 0.00 2.66
5746 8027 6.478512 TCAATGAAAAACTGGCCTACTTTT 57.521 33.333 3.32 6.63 0.00 2.27
5747 8028 6.883744 TCAATGAAAAACTGGCCTACTTTTT 58.116 32.000 3.32 10.83 31.34 1.94
5748 8029 6.983890 TCAATGAAAAACTGGCCTACTTTTTC 59.016 34.615 24.40 24.40 41.32 2.29
5749 8030 6.731292 ATGAAAAACTGGCCTACTTTTTCT 57.269 33.333 27.62 18.52 41.43 2.52
5750 8031 6.538945 TGAAAAACTGGCCTACTTTTTCTT 57.461 33.333 27.62 9.64 41.43 2.52
5751 8032 6.941857 TGAAAAACTGGCCTACTTTTTCTTT 58.058 32.000 27.62 10.43 41.43 2.52
5752 8033 7.390823 TGAAAAACTGGCCTACTTTTTCTTTT 58.609 30.769 27.62 13.63 41.43 2.27
5753 8034 7.333174 TGAAAAACTGGCCTACTTTTTCTTTTG 59.667 33.333 27.62 0.54 41.43 2.44
5754 8035 6.538945 AAACTGGCCTACTTTTTCTTTTGA 57.461 33.333 3.32 0.00 0.00 2.69
5755 8036 6.538945 AACTGGCCTACTTTTTCTTTTGAA 57.461 33.333 3.32 0.00 36.52 2.69
5756 8037 5.902681 ACTGGCCTACTTTTTCTTTTGAAC 58.097 37.500 3.32 0.00 38.30 3.18
5757 8038 4.927422 TGGCCTACTTTTTCTTTTGAACG 58.073 39.130 3.32 0.00 38.30 3.95
5758 8039 4.202070 TGGCCTACTTTTTCTTTTGAACGG 60.202 41.667 3.32 0.00 38.30 4.44
5759 8040 4.037089 GGCCTACTTTTTCTTTTGAACGGA 59.963 41.667 0.00 0.00 38.30 4.69
5760 8041 5.212934 GCCTACTTTTTCTTTTGAACGGAG 58.787 41.667 0.00 0.00 38.30 4.63
5761 8042 5.758924 CCTACTTTTTCTTTTGAACGGAGG 58.241 41.667 0.00 0.00 38.30 4.30
5782 8063 4.957954 AGGCATCCATTCATTAAGCAGAAA 59.042 37.500 0.00 0.00 0.00 2.52
5784 8065 6.070653 AGGCATCCATTCATTAAGCAGAAAAA 60.071 34.615 0.00 0.00 0.00 1.94
5805 8086 5.622770 AAAGTTGTCTGGCTAATTAACGG 57.377 39.130 0.00 0.00 0.00 4.44
5806 8087 3.606687 AGTTGTCTGGCTAATTAACGGG 58.393 45.455 0.00 0.00 0.00 5.28
5810 8091 4.004982 TGTCTGGCTAATTAACGGGAAAC 58.995 43.478 0.00 0.00 0.00 2.78
5832 8113 3.875134 CCGGACTAAAACTGTCACAAACT 59.125 43.478 0.00 0.00 36.26 2.66
5841 8122 3.009723 ACTGTCACAAACTGTTGAGTGG 58.990 45.455 19.68 10.77 36.74 4.00
5876 8158 2.757868 CCCACACACCTCAACAAAAAGA 59.242 45.455 0.00 0.00 0.00 2.52
5888 8170 6.293407 CCTCAACAAAAAGAGCTTCGTCAATA 60.293 38.462 0.00 0.00 0.00 1.90
5890 8172 8.317891 TCAACAAAAAGAGCTTCGTCAATATA 57.682 30.769 0.00 0.00 0.00 0.86
5896 8178 5.537300 AGAGCTTCGTCAATATACACCAT 57.463 39.130 0.00 0.00 0.00 3.55
5903 8185 3.361627 CGTCAATATACACCATTGCGTCG 60.362 47.826 0.00 0.00 34.12 5.12
5907 8189 0.108992 ATACACCATTGCGTCGTCGT 60.109 50.000 3.66 0.00 39.49 4.34
5908 8190 0.730155 TACACCATTGCGTCGTCGTC 60.730 55.000 3.66 0.00 39.49 4.20
5909 8191 2.019408 CACCATTGCGTCGTCGTCA 61.019 57.895 3.66 0.00 39.49 4.35
5910 8192 1.080093 ACCATTGCGTCGTCGTCAT 60.080 52.632 3.66 0.00 39.49 3.06
5911 8193 1.076533 ACCATTGCGTCGTCGTCATC 61.077 55.000 3.66 0.00 39.49 2.92
5912 8194 1.075979 CCATTGCGTCGTCGTCATCA 61.076 55.000 3.66 0.00 39.49 3.07
5913 8195 0.023732 CATTGCGTCGTCGTCATCAC 59.976 55.000 3.66 0.00 39.49 3.06
5914 8196 0.109272 ATTGCGTCGTCGTCATCACT 60.109 50.000 3.66 0.00 39.49 3.41
5915 8197 0.318360 TTGCGTCGTCGTCATCACTT 60.318 50.000 3.66 0.00 39.49 3.16
5916 8198 0.518195 TGCGTCGTCGTCATCACTTA 59.482 50.000 3.66 0.00 39.49 2.24
5917 8199 1.069091 TGCGTCGTCGTCATCACTTAA 60.069 47.619 3.66 0.00 39.49 1.85
5918 8200 1.316735 GCGTCGTCGTCATCACTTAAC 59.683 52.381 3.66 0.00 39.49 2.01
5919 8201 2.577450 CGTCGTCGTCATCACTTAACA 58.423 47.619 0.00 0.00 0.00 2.41
5920 8202 2.588539 CGTCGTCGTCATCACTTAACAG 59.411 50.000 0.00 0.00 0.00 3.16
5921 8203 2.915463 GTCGTCGTCATCACTTAACAGG 59.085 50.000 0.00 0.00 0.00 4.00
5922 8204 2.555325 TCGTCGTCATCACTTAACAGGT 59.445 45.455 0.00 0.00 0.00 4.00
5959 8298 0.897863 ACTCTGAGCAAGCGACTCCT 60.898 55.000 4.19 0.00 32.98 3.69
5967 8306 1.063806 CAAGCGACTCCTCTTTCGTG 58.936 55.000 0.00 0.00 37.56 4.35
5981 8320 3.578716 TCTTTCGTGGAAGAGGAACATCT 59.421 43.478 0.00 0.00 32.19 2.90
5988 8327 4.715297 GTGGAAGAGGAACATCTACCCTTA 59.285 45.833 0.00 0.00 0.00 2.69
6004 8343 2.036089 CCCTTAGCCTACTTTCCTAGCG 59.964 54.545 0.00 0.00 0.00 4.26
6083 8429 8.375493 AGGAGTAGTATAATTCAACAACCAGA 57.625 34.615 0.00 0.00 0.00 3.86
6123 8473 6.849588 AACAAACAAAAAGAATGAGATGGC 57.150 33.333 0.00 0.00 0.00 4.40
6132 8482 2.026542 AGAATGAGATGGCAGTGCAAGA 60.027 45.455 18.61 0.00 0.00 3.02
6229 8582 0.983378 AGAATAGGAAGGGGCGTGCT 60.983 55.000 0.00 0.00 0.00 4.40
6245 8598 2.478709 CGTGCTAGAAAGACGCATCTCT 60.479 50.000 0.00 0.00 35.93 3.10
6246 8599 3.112580 GTGCTAGAAAGACGCATCTCTC 58.887 50.000 0.00 0.00 35.93 3.20
6333 8688 5.021033 TGACAAGTTGGCATCAAACAAAT 57.979 34.783 7.51 0.00 34.28 2.32
6412 8768 1.806542 CCACCTGAATTCCACTGTTCG 59.193 52.381 2.27 0.00 0.00 3.95
6418 8774 2.289444 TGAATTCCACTGTTCGACCCTC 60.289 50.000 2.27 0.00 0.00 4.30
6420 8776 0.471211 TTCCACTGTTCGACCCTCCT 60.471 55.000 0.00 0.00 0.00 3.69
6421 8777 1.185618 TCCACTGTTCGACCCTCCTG 61.186 60.000 0.00 0.00 0.00 3.86
6422 8778 1.374758 CACTGTTCGACCCTCCTGC 60.375 63.158 0.00 0.00 0.00 4.85
6465 8822 2.794631 CGGATTTTGCATCGTTAAGGGC 60.795 50.000 0.00 0.00 0.00 5.19
6466 8823 2.165437 GGATTTTGCATCGTTAAGGGCA 59.835 45.455 0.00 0.00 0.00 5.36
6467 8824 3.181476 GGATTTTGCATCGTTAAGGGCAT 60.181 43.478 0.00 0.00 35.98 4.40
6468 8825 3.502191 TTTTGCATCGTTAAGGGCATC 57.498 42.857 0.00 0.00 35.98 3.91
6469 8826 2.418368 TTGCATCGTTAAGGGCATCT 57.582 45.000 0.00 0.00 35.98 2.90
6470 8827 2.418368 TGCATCGTTAAGGGCATCTT 57.582 45.000 0.00 0.00 39.40 2.40
6471 8828 2.288666 TGCATCGTTAAGGGCATCTTC 58.711 47.619 0.00 0.00 36.93 2.87
6472 8829 2.288666 GCATCGTTAAGGGCATCTTCA 58.711 47.619 0.00 0.00 36.93 3.02
6473 8830 2.289002 GCATCGTTAAGGGCATCTTCAG 59.711 50.000 0.00 0.00 36.93 3.02
6474 8831 2.024176 TCGTTAAGGGCATCTTCAGC 57.976 50.000 0.00 0.00 36.93 4.26
6480 8837 3.190878 GGCATCTTCAGCCGTTGG 58.809 61.111 0.00 0.00 43.15 3.77
6491 8848 4.101448 CCGTTGGCCCCTCAGGAG 62.101 72.222 0.00 0.00 38.24 3.69
6514 8871 4.764143 AAAAATCGCCCCTGGGAG 57.236 55.556 16.20 8.14 36.82 4.30
6515 8872 1.682344 AAAAATCGCCCCTGGGAGC 60.682 57.895 16.20 14.96 36.82 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 3.858247 ACTAATGAGTTTAGTCACGGGC 58.142 45.455 0.00 0.00 46.04 6.13
104 105 4.051922 GCCCTCTCAGTAATACAACATCG 58.948 47.826 0.00 0.00 0.00 3.84
118 119 2.363018 CGTCTCTGGGCCCTCTCA 60.363 66.667 25.70 0.01 0.00 3.27
135 136 1.003331 CGCTCCGTGTGATAGAGAGAC 60.003 57.143 0.00 0.00 29.96 3.36
143 144 1.337728 TGATTTGTCGCTCCGTGTGAT 60.338 47.619 0.00 0.00 37.53 3.06
163 164 1.406069 GGTTGCATGGATCGAGACTGT 60.406 52.381 0.00 0.00 0.00 3.55
216 217 9.123902 CACTTCATAATTGGGTGATCATAAAGA 57.876 33.333 0.00 0.00 32.60 2.52
232 233 8.510243 TGTGCTATCAAACATCACTTCATAAT 57.490 30.769 0.00 0.00 0.00 1.28
236 237 6.316140 GGTATGTGCTATCAAACATCACTTCA 59.684 38.462 0.00 0.00 38.05 3.02
244 245 4.682787 CTCTCGGTATGTGCTATCAAACA 58.317 43.478 0.00 0.00 0.00 2.83
258 259 4.630069 GTGCAGAAATAAAAGCTCTCGGTA 59.370 41.667 0.00 0.00 0.00 4.02
276 277 9.577110 AACTATCATGATGTTATTTTTGTGCAG 57.423 29.630 18.72 4.78 0.00 4.41
297 298 5.700832 TCAACGATGTTTTCAGCAGAACTAT 59.299 36.000 0.00 0.00 35.78 2.12
321 322 9.683069 GCATATTTGAATGGAACTAATTCGAAT 57.317 29.630 4.39 4.39 35.48 3.34
323 324 8.219546 TGCATATTTGAATGGAACTAATTCGA 57.780 30.769 0.00 0.00 35.48 3.71
395 397 6.036083 GCAGTGTTACATGATACGTCTCAAAT 59.964 38.462 7.78 2.08 0.00 2.32
420 422 2.431954 ATGCACCCCTCTCATTTCTG 57.568 50.000 0.00 0.00 0.00 3.02
452 454 6.017192 CGCCATTATCCATTCAGTAATTGTCA 60.017 38.462 0.00 0.00 0.00 3.58
534 536 5.182001 GTGGACATTATATTCCTCATGCACC 59.818 44.000 0.00 0.00 32.55 5.01
541 543 4.993705 TGGGGTGGACATTATATTCCTC 57.006 45.455 0.00 0.00 32.55 3.71
595 607 4.456911 ACGTGATTTCATCAGCAATTCACT 59.543 37.500 0.00 0.00 40.53 3.41
601 613 2.777094 TGGACGTGATTTCATCAGCAA 58.223 42.857 0.00 0.00 40.53 3.91
790 802 6.877611 AATGTTCAGTACCAAGTTTAGGTG 57.122 37.500 0.00 0.00 40.26 4.00
885 2871 7.484959 CAGTTGTTCAGTTTAGTCCTTCAAAAC 59.515 37.037 0.00 0.00 34.13 2.43
1607 3594 5.181748 GGGATCTATTAGCTACATGCCTTG 58.818 45.833 0.00 0.00 44.23 3.61
1654 3641 4.036734 CACACAGCAAAAACTACACCTCAT 59.963 41.667 0.00 0.00 0.00 2.90
1682 3669 0.521867 CGCACAATCACATTCGCAGG 60.522 55.000 0.00 0.00 0.00 4.85
1687 3674 2.247311 GTGACCGCACAATCACATTC 57.753 50.000 0.00 0.00 43.89 2.67
1701 3688 1.331756 CACAGCAACTCACAAGTGACC 59.668 52.381 0.00 0.00 35.36 4.02
1895 3883 2.672961 TGGTTCATAAGAGGCAGTCG 57.327 50.000 0.00 0.00 0.00 4.18
1901 3889 9.915629 GTACTAGAATGTATGGTTCATAAGAGG 57.084 37.037 0.00 0.00 0.00 3.69
1924 3912 8.989653 ATAGCAAACAGTTTAGAGAAGAGTAC 57.010 34.615 0.00 0.00 0.00 2.73
2013 4001 3.181490 GCGTGGACTAAATCATTTTCCCC 60.181 47.826 0.00 0.00 0.00 4.81
2034 4022 7.703298 ATGCATAACATCAACAAATATGTGC 57.297 32.000 0.00 0.00 35.06 4.57
2085 4073 4.800993 GTCAGACACTGATTCAACGGATAG 59.199 45.833 4.79 0.00 42.73 2.08
2090 4078 3.777807 GTGTCAGACACTGATTCAACG 57.222 47.619 24.23 0.00 45.27 4.10
2165 4153 5.779771 ACATGTGGTCAATTTTAACTCCCAT 59.220 36.000 0.00 0.00 0.00 4.00
2436 4424 3.930229 TCACATACGTGTCCATAAGTTGC 59.070 43.478 0.00 0.00 44.02 4.17
2481 4469 9.162793 GTCAACTCAAATATGAAGCAAATATCG 57.837 33.333 0.00 0.00 34.49 2.92
2632 4621 3.006859 TCCCATTCCGTATGCATCTGTAG 59.993 47.826 0.19 0.00 32.60 2.74
3023 5012 4.768968 GGGCCAGCAATGATACTATTGAAT 59.231 41.667 4.39 0.00 39.79 2.57
3039 5028 1.143183 CAAGCAATCATGGGCCAGC 59.857 57.895 13.78 9.76 0.00 4.85
3042 5031 1.340248 CAGATCAAGCAATCATGGGCC 59.660 52.381 0.00 0.00 0.00 5.80
3048 5037 7.122138 AGAGATTAGACAGATCAAGCAATCA 57.878 36.000 0.00 0.00 0.00 2.57
3076 5065 3.583086 ACCAGGCTTAGATACAAGTGTGT 59.417 43.478 0.00 0.00 42.09 3.72
3093 5082 2.348411 AGGCGATAAAATGGACCAGG 57.652 50.000 0.00 0.00 0.00 4.45
3265 5254 5.544650 ACAACTACGCATACTTGGTAACTT 58.455 37.500 0.00 0.00 37.61 2.66
3765 5760 6.017400 ACATTACAACAGATTCAAGCCTTG 57.983 37.500 0.00 0.00 0.00 3.61
3833 5828 1.271379 ACGGAAATCCAGTCCAACCAG 60.271 52.381 0.00 0.00 34.56 4.00
4167 6163 6.889722 AGTGGTGTTAATTTATGGTGCTACAT 59.110 34.615 0.00 0.00 34.90 2.29
4209 6205 3.437049 GTGAATCCAAGACAACCTAGCAC 59.563 47.826 0.00 0.00 0.00 4.40
4421 6417 8.803235 AGACATGTCAACTTGTATACTCACTAA 58.197 33.333 27.02 0.00 34.86 2.24
4447 6443 4.191544 CCTGCATCCAAGAGTTCGAAATA 58.808 43.478 0.00 0.00 0.00 1.40
4448 6444 3.012518 CCTGCATCCAAGAGTTCGAAAT 58.987 45.455 0.00 0.00 0.00 2.17
4506 6505 2.751259 GACATGCTTCAAGCTCAATGGA 59.249 45.455 11.57 0.00 42.97 3.41
4572 6571 4.635223 GCATGGCATTGTATCTCACTAGA 58.365 43.478 0.00 0.00 35.80 2.43
4578 6577 1.882912 TCCGCATGGCATTGTATCTC 58.117 50.000 0.00 0.00 34.14 2.75
4641 6640 8.581253 AAGCTTAAGTTACCTCAATAAATGCT 57.419 30.769 0.00 0.00 0.00 3.79
4710 6966 8.109634 AGCATATCCTTTTTCTTTACTTCTCCA 58.890 33.333 0.00 0.00 0.00 3.86
4791 7048 8.885494 AATTTACATATGAGACTTCTCTGAGC 57.115 34.615 10.38 0.00 43.25 4.26
4818 7075 1.611006 TGCGACCTGAGATGAGATAGC 59.389 52.381 0.00 0.00 0.00 2.97
4946 7203 2.202932 CTGCTGATCCCCGAACCG 60.203 66.667 0.00 0.00 0.00 4.44
4952 7209 1.245732 GATCAATGCTGCTGATCCCC 58.754 55.000 16.76 0.00 42.22 4.81
4976 7233 1.749634 CTTTCGATACCTCCTGACGGT 59.250 52.381 0.00 0.00 38.55 4.83
4988 7245 3.096852 TCCAGACTGCCTTCTTTCGATA 58.903 45.455 0.00 0.00 0.00 2.92
5006 7263 1.271325 TGCTTTCTTTCGATGCCTCCA 60.271 47.619 0.00 0.00 0.00 3.86
5015 7272 2.072298 CCTCCTGACTGCTTTCTTTCG 58.928 52.381 0.00 0.00 0.00 3.46
5226 7507 4.271696 ACTTCGACAGATTCCATCAACA 57.728 40.909 0.00 0.00 0.00 3.33
5276 7557 3.684788 ACCAAACTGTCGATGAACATAGC 59.315 43.478 0.00 0.00 0.00 2.97
5389 7670 4.850347 AACATCTACGTATGGGCTAGAC 57.150 45.455 0.00 0.00 0.00 2.59
5411 7692 3.937079 GTCCGAAACAATTTCCGGTCTAT 59.063 43.478 0.00 0.00 36.30 1.98
5421 7702 6.877611 ACTTATTGTCAGTCCGAAACAATT 57.122 33.333 5.40 0.00 42.14 2.32
5482 7763 2.945668 GACCTTCATTACCAGATGTGCC 59.054 50.000 0.00 0.00 0.00 5.01
5505 7786 0.393132 GCTAAGGGTGGCTTCCAGTC 60.393 60.000 2.26 0.00 32.34 3.51
5582 7863 7.442969 TGCTCACGGAGTTTTCTTCTATAAAAA 59.557 33.333 3.38 0.00 41.61 1.94
5583 7864 6.932400 TGCTCACGGAGTTTTCTTCTATAAAA 59.068 34.615 3.38 0.00 41.61 1.52
5584 7865 6.460781 TGCTCACGGAGTTTTCTTCTATAAA 58.539 36.000 3.38 0.00 41.61 1.40
5585 7866 6.032956 TGCTCACGGAGTTTTCTTCTATAA 57.967 37.500 3.38 0.00 41.61 0.98
5586 7867 5.654603 TGCTCACGGAGTTTTCTTCTATA 57.345 39.130 3.38 0.00 41.61 1.31
5587 7868 4.537135 TGCTCACGGAGTTTTCTTCTAT 57.463 40.909 3.38 0.00 41.61 1.98
5588 7869 4.021456 TGATGCTCACGGAGTTTTCTTCTA 60.021 41.667 3.38 0.00 41.61 2.10
5589 7870 2.910688 TGCTCACGGAGTTTTCTTCT 57.089 45.000 3.38 0.00 41.61 2.85
5590 7871 3.067106 TGATGCTCACGGAGTTTTCTTC 58.933 45.455 3.38 0.00 41.61 2.87
5591 7872 3.126001 TGATGCTCACGGAGTTTTCTT 57.874 42.857 3.38 0.00 41.61 2.52
5592 7873 2.839486 TGATGCTCACGGAGTTTTCT 57.161 45.000 3.38 0.00 41.61 2.52
5593 7874 3.555518 GTTTGATGCTCACGGAGTTTTC 58.444 45.455 3.38 0.28 41.61 2.29
5594 7875 2.032030 CGTTTGATGCTCACGGAGTTTT 60.032 45.455 3.38 0.00 41.61 2.43
5595 7876 1.531149 CGTTTGATGCTCACGGAGTTT 59.469 47.619 3.38 0.00 41.61 2.66
5596 7877 1.148310 CGTTTGATGCTCACGGAGTT 58.852 50.000 3.38 0.00 41.61 3.01
5597 7878 3.631249 AGCGTTTGATGCTCACGGAGT 62.631 52.381 3.38 0.00 34.99 3.85
5598 7879 1.016130 AGCGTTTGATGCTCACGGAG 61.016 55.000 0.00 0.00 34.99 4.63
5599 7880 1.005037 AGCGTTTGATGCTCACGGA 60.005 52.632 0.00 0.00 34.99 4.69
5600 7881 3.566261 AGCGTTTGATGCTCACGG 58.434 55.556 0.00 0.00 34.99 4.94
5605 7886 1.357258 CTGCTCGAGCGTTTGATGCT 61.357 55.000 30.75 0.00 44.42 3.79
5606 7887 1.059994 CTGCTCGAGCGTTTGATGC 59.940 57.895 30.75 6.74 45.83 3.91
5607 7888 0.644331 CTCTGCTCGAGCGTTTGATG 59.356 55.000 30.75 14.66 45.83 3.07
5608 7889 0.528017 TCTCTGCTCGAGCGTTTGAT 59.472 50.000 30.75 0.00 45.83 2.57
5609 7890 0.387367 GTCTCTGCTCGAGCGTTTGA 60.387 55.000 30.75 22.80 45.83 2.69
5610 7891 0.387878 AGTCTCTGCTCGAGCGTTTG 60.388 55.000 30.75 20.17 45.83 2.93
5611 7892 0.315568 AAGTCTCTGCTCGAGCGTTT 59.684 50.000 30.75 15.56 45.83 3.60
5612 7893 0.387878 CAAGTCTCTGCTCGAGCGTT 60.388 55.000 30.75 14.53 45.83 4.84
5613 7894 1.211449 CAAGTCTCTGCTCGAGCGT 59.789 57.895 30.75 9.40 45.83 5.07
5614 7895 0.796491 GTCAAGTCTCTGCTCGAGCG 60.796 60.000 30.75 24.28 45.83 5.03
5615 7896 0.457681 GGTCAAGTCTCTGCTCGAGC 60.458 60.000 30.42 30.42 39.70 5.03
5616 7897 0.172352 GGGTCAAGTCTCTGCTCGAG 59.828 60.000 8.45 8.45 41.30 4.04
5617 7898 0.251386 AGGGTCAAGTCTCTGCTCGA 60.251 55.000 0.00 0.00 0.00 4.04
5618 7899 0.108898 CAGGGTCAAGTCTCTGCTCG 60.109 60.000 0.00 0.00 0.00 5.03
5619 7900 0.248843 CCAGGGTCAAGTCTCTGCTC 59.751 60.000 0.00 0.00 0.00 4.26
5620 7901 0.472734 ACCAGGGTCAAGTCTCTGCT 60.473 55.000 0.00 0.00 0.00 4.24
5621 7902 0.321122 CACCAGGGTCAAGTCTCTGC 60.321 60.000 0.00 0.00 0.00 4.26
5622 7903 0.322975 CCACCAGGGTCAAGTCTCTG 59.677 60.000 0.00 0.00 0.00 3.35
5623 7904 2.765352 CCACCAGGGTCAAGTCTCT 58.235 57.895 0.00 0.00 0.00 3.10
5634 7915 1.925285 TTCATAGCCAGCCCACCAGG 61.925 60.000 0.00 0.00 39.47 4.45
5635 7916 0.749454 GTTCATAGCCAGCCCACCAG 60.749 60.000 0.00 0.00 0.00 4.00
5636 7917 1.207488 AGTTCATAGCCAGCCCACCA 61.207 55.000 0.00 0.00 0.00 4.17
5637 7918 0.464554 GAGTTCATAGCCAGCCCACC 60.465 60.000 0.00 0.00 0.00 4.61
5638 7919 0.464554 GGAGTTCATAGCCAGCCCAC 60.465 60.000 0.00 0.00 0.00 4.61
5639 7920 1.635817 GGGAGTTCATAGCCAGCCCA 61.636 60.000 0.00 0.00 34.25 5.36
5640 7921 1.149401 GGGAGTTCATAGCCAGCCC 59.851 63.158 0.00 0.00 0.00 5.19
5641 7922 1.227674 CGGGAGTTCATAGCCAGCC 60.228 63.158 0.00 0.00 0.00 4.85
5642 7923 1.889573 GCGGGAGTTCATAGCCAGC 60.890 63.158 0.00 0.00 35.85 4.85
5643 7924 1.592669 CGCGGGAGTTCATAGCCAG 60.593 63.158 0.00 0.00 0.00 4.85
5644 7925 2.499205 CGCGGGAGTTCATAGCCA 59.501 61.111 0.00 0.00 0.00 4.75
5645 7926 2.967615 GCGCGGGAGTTCATAGCC 60.968 66.667 8.83 0.00 0.00 3.93
5646 7927 2.925162 AAGGCGCGGGAGTTCATAGC 62.925 60.000 8.83 0.00 0.00 2.97
5647 7928 1.144057 AAGGCGCGGGAGTTCATAG 59.856 57.895 8.83 0.00 0.00 2.23
5648 7929 1.153449 CAAGGCGCGGGAGTTCATA 60.153 57.895 8.83 0.00 0.00 2.15
5649 7930 2.436646 CAAGGCGCGGGAGTTCAT 60.437 61.111 8.83 0.00 0.00 2.57
5658 7939 4.688419 CACAGTTGGCAAGGCGCG 62.688 66.667 0.00 0.00 43.84 6.86
5660 7941 1.965930 TAGCACAGTTGGCAAGGCG 60.966 57.895 0.00 0.00 0.00 5.52
5661 7942 1.172180 TGTAGCACAGTTGGCAAGGC 61.172 55.000 0.00 2.39 0.00 4.35
5662 7943 0.593128 GTGTAGCACAGTTGGCAAGG 59.407 55.000 0.00 0.00 34.08 3.61
5663 7944 1.532868 GAGTGTAGCACAGTTGGCAAG 59.467 52.381 0.00 0.00 36.74 4.01
5664 7945 1.134250 TGAGTGTAGCACAGTTGGCAA 60.134 47.619 0.00 0.00 36.74 4.52
5665 7946 0.467804 TGAGTGTAGCACAGTTGGCA 59.532 50.000 2.01 0.00 36.74 4.92
5666 7947 1.151668 CTGAGTGTAGCACAGTTGGC 58.848 55.000 2.01 0.00 36.74 4.52
5667 7948 2.533266 ACTGAGTGTAGCACAGTTGG 57.467 50.000 0.00 0.00 44.63 3.77
5671 7952 3.650070 TGAGAACTGAGTGTAGCACAG 57.350 47.619 2.01 0.00 40.83 3.66
5672 7953 3.243873 CCTTGAGAACTGAGTGTAGCACA 60.244 47.826 2.01 0.00 36.74 4.57
5673 7954 3.321497 CCTTGAGAACTGAGTGTAGCAC 58.679 50.000 0.00 0.00 34.10 4.40
5674 7955 2.289072 GCCTTGAGAACTGAGTGTAGCA 60.289 50.000 0.00 0.00 0.00 3.49
5675 7956 2.289072 TGCCTTGAGAACTGAGTGTAGC 60.289 50.000 0.00 0.00 0.00 3.58
5676 7957 3.667497 TGCCTTGAGAACTGAGTGTAG 57.333 47.619 0.00 0.00 0.00 2.74
5677 7958 3.055819 GGATGCCTTGAGAACTGAGTGTA 60.056 47.826 0.00 0.00 0.00 2.90
5678 7959 2.289945 GGATGCCTTGAGAACTGAGTGT 60.290 50.000 0.00 0.00 0.00 3.55
5679 7960 2.289882 TGGATGCCTTGAGAACTGAGTG 60.290 50.000 0.00 0.00 0.00 3.51
5680 7961 1.980765 TGGATGCCTTGAGAACTGAGT 59.019 47.619 0.00 0.00 0.00 3.41
5681 7962 2.775911 TGGATGCCTTGAGAACTGAG 57.224 50.000 0.00 0.00 0.00 3.35
5682 7963 3.009363 TGAATGGATGCCTTGAGAACTGA 59.991 43.478 0.00 0.00 0.00 3.41
5683 7964 3.349927 TGAATGGATGCCTTGAGAACTG 58.650 45.455 0.00 0.00 0.00 3.16
5684 7965 3.726557 TGAATGGATGCCTTGAGAACT 57.273 42.857 0.00 0.00 0.00 3.01
5685 7966 4.789012 TTTGAATGGATGCCTTGAGAAC 57.211 40.909 0.00 0.00 0.00 3.01
5686 7967 5.078949 TCTTTTGAATGGATGCCTTGAGAA 58.921 37.500 0.00 0.00 0.00 2.87
5687 7968 4.665451 TCTTTTGAATGGATGCCTTGAGA 58.335 39.130 0.00 0.00 0.00 3.27
5688 7969 4.461781 ACTCTTTTGAATGGATGCCTTGAG 59.538 41.667 0.00 0.00 0.00 3.02
5689 7970 4.410099 ACTCTTTTGAATGGATGCCTTGA 58.590 39.130 0.00 0.00 0.00 3.02
5690 7971 4.796038 ACTCTTTTGAATGGATGCCTTG 57.204 40.909 0.00 0.00 0.00 3.61
5691 7972 4.562143 GCAACTCTTTTGAATGGATGCCTT 60.562 41.667 0.00 0.00 0.00 4.35
5692 7973 3.056322 GCAACTCTTTTGAATGGATGCCT 60.056 43.478 0.00 0.00 0.00 4.75
5693 7974 3.256558 GCAACTCTTTTGAATGGATGCC 58.743 45.455 0.00 0.00 0.00 4.40
5694 7975 3.256558 GGCAACTCTTTTGAATGGATGC 58.743 45.455 0.00 0.00 0.00 3.91
5710 7991 6.705825 AGTTTTTCATTGATTAACCAGGCAAC 59.294 34.615 7.43 0.00 0.00 4.17
5711 7992 6.705381 CAGTTTTTCATTGATTAACCAGGCAA 59.295 34.615 7.43 0.00 0.00 4.52
5712 7993 6.222389 CAGTTTTTCATTGATTAACCAGGCA 58.778 36.000 7.43 0.00 0.00 4.75
5713 7994 5.639082 CCAGTTTTTCATTGATTAACCAGGC 59.361 40.000 7.43 0.00 0.00 4.85
5714 7995 5.639082 GCCAGTTTTTCATTGATTAACCAGG 59.361 40.000 11.83 11.83 0.00 4.45
5715 7996 5.639082 GGCCAGTTTTTCATTGATTAACCAG 59.361 40.000 0.00 2.83 0.00 4.00
5716 7997 5.306678 AGGCCAGTTTTTCATTGATTAACCA 59.693 36.000 5.01 0.00 0.00 3.67
5717 7998 5.793817 AGGCCAGTTTTTCATTGATTAACC 58.206 37.500 5.01 0.00 0.00 2.85
5718 7999 7.602753 AGTAGGCCAGTTTTTCATTGATTAAC 58.397 34.615 5.01 0.00 0.00 2.01
5719 8000 7.775053 AGTAGGCCAGTTTTTCATTGATTAA 57.225 32.000 5.01 0.00 0.00 1.40
5720 8001 7.775053 AAGTAGGCCAGTTTTTCATTGATTA 57.225 32.000 5.01 0.00 0.00 1.75
5721 8002 6.670695 AAGTAGGCCAGTTTTTCATTGATT 57.329 33.333 5.01 0.00 0.00 2.57
5722 8003 6.670695 AAAGTAGGCCAGTTTTTCATTGAT 57.329 33.333 5.01 0.00 0.00 2.57
5723 8004 6.478512 AAAAGTAGGCCAGTTTTTCATTGA 57.521 33.333 5.01 0.00 36.55 2.57
5730 8011 6.941857 TCAAAAGAAAAAGTAGGCCAGTTTT 58.058 32.000 5.01 9.98 40.74 2.43
5731 8012 6.538945 TCAAAAGAAAAAGTAGGCCAGTTT 57.461 33.333 5.01 3.77 0.00 2.66
5732 8013 6.338146 GTTCAAAAGAAAAAGTAGGCCAGTT 58.662 36.000 5.01 0.00 0.00 3.16
5733 8014 5.449999 CGTTCAAAAGAAAAAGTAGGCCAGT 60.450 40.000 5.01 0.00 0.00 4.00
5734 8015 4.976116 CGTTCAAAAGAAAAAGTAGGCCAG 59.024 41.667 5.01 0.00 0.00 4.85
5735 8016 4.202070 CCGTTCAAAAGAAAAAGTAGGCCA 60.202 41.667 5.01 0.00 0.00 5.36
5736 8017 4.037089 TCCGTTCAAAAGAAAAAGTAGGCC 59.963 41.667 0.00 0.00 0.00 5.19
5737 8018 5.177725 TCCGTTCAAAAGAAAAAGTAGGC 57.822 39.130 0.00 0.00 0.00 3.93
5738 8019 5.758924 CCTCCGTTCAAAAGAAAAAGTAGG 58.241 41.667 0.00 0.00 0.00 3.18
5739 8020 5.212934 GCCTCCGTTCAAAAGAAAAAGTAG 58.787 41.667 0.00 0.00 0.00 2.57
5740 8021 4.641094 TGCCTCCGTTCAAAAGAAAAAGTA 59.359 37.500 0.00 0.00 0.00 2.24
5741 8022 3.445805 TGCCTCCGTTCAAAAGAAAAAGT 59.554 39.130 0.00 0.00 0.00 2.66
5742 8023 4.040445 TGCCTCCGTTCAAAAGAAAAAG 57.960 40.909 0.00 0.00 0.00 2.27
5743 8024 4.500716 GGATGCCTCCGTTCAAAAGAAAAA 60.501 41.667 0.00 0.00 0.00 1.94
5744 8025 3.005367 GGATGCCTCCGTTCAAAAGAAAA 59.995 43.478 0.00 0.00 0.00 2.29
5745 8026 2.556622 GGATGCCTCCGTTCAAAAGAAA 59.443 45.455 0.00 0.00 0.00 2.52
5746 8027 2.159382 GGATGCCTCCGTTCAAAAGAA 58.841 47.619 0.00 0.00 0.00 2.52
5747 8028 1.073125 TGGATGCCTCCGTTCAAAAGA 59.927 47.619 3.39 0.00 45.37 2.52
5748 8029 1.533625 TGGATGCCTCCGTTCAAAAG 58.466 50.000 3.39 0.00 45.37 2.27
5749 8030 2.214376 ATGGATGCCTCCGTTCAAAA 57.786 45.000 3.39 0.00 45.37 2.44
5750 8031 2.214376 AATGGATGCCTCCGTTCAAA 57.786 45.000 9.49 0.00 45.91 2.69
5751 8032 3.976704 AATGGATGCCTCCGTTCAA 57.023 47.368 9.49 0.00 45.91 2.69
5755 8036 3.480470 CTTAATGAATGGATGCCTCCGT 58.520 45.455 3.39 0.00 45.37 4.69
5756 8037 2.227388 GCTTAATGAATGGATGCCTCCG 59.773 50.000 3.39 0.00 45.37 4.63
5757 8038 3.225104 TGCTTAATGAATGGATGCCTCC 58.775 45.455 0.22 0.22 42.45 4.30
5758 8039 4.139786 TCTGCTTAATGAATGGATGCCTC 58.860 43.478 0.00 0.00 0.00 4.70
5759 8040 4.174704 TCTGCTTAATGAATGGATGCCT 57.825 40.909 0.00 0.00 0.00 4.75
5760 8041 4.924305 TTCTGCTTAATGAATGGATGCC 57.076 40.909 0.00 0.00 0.00 4.40
5782 8063 5.048294 CCCGTTAATTAGCCAGACAACTTTT 60.048 40.000 0.00 0.00 0.00 2.27
5784 8065 4.007659 CCCGTTAATTAGCCAGACAACTT 58.992 43.478 0.00 0.00 0.00 2.66
5805 8086 3.249320 GTGACAGTTTTAGTCCGGTTTCC 59.751 47.826 0.00 0.00 35.15 3.13
5806 8087 3.872771 TGTGACAGTTTTAGTCCGGTTTC 59.127 43.478 0.00 0.00 35.15 2.78
5810 8091 3.875134 AGTTTGTGACAGTTTTAGTCCGG 59.125 43.478 0.00 0.00 35.15 5.14
5832 8113 0.176910 TTCTCGTGTGCCACTCAACA 59.823 50.000 0.00 0.00 31.34 3.33
5859 8141 4.354587 GAAGCTCTTTTTGTTGAGGTGTG 58.645 43.478 0.00 0.00 40.36 3.82
5869 8151 6.961554 GGTGTATATTGACGAAGCTCTTTTTG 59.038 38.462 0.00 0.00 0.00 2.44
5876 8158 4.273480 GCAATGGTGTATATTGACGAAGCT 59.727 41.667 0.00 0.00 37.65 3.74
5888 8170 0.108992 ACGACGACGCAATGGTGTAT 60.109 50.000 7.30 0.00 43.96 2.29
5890 8172 2.019951 GACGACGACGCAATGGTGT 61.020 57.895 7.30 0.00 43.96 4.16
5896 8178 0.318360 AAGTGATGACGACGACGCAA 60.318 50.000 7.30 0.00 43.96 4.85
5903 8185 3.650139 ACACCTGTTAAGTGATGACGAC 58.350 45.455 0.00 0.00 38.63 4.34
5907 8189 5.237815 GTGATGACACCTGTTAAGTGATGA 58.762 41.667 0.73 0.00 40.74 2.92
5908 8190 5.536554 GTGATGACACCTGTTAAGTGATG 57.463 43.478 0.73 0.00 40.74 3.07
5921 8203 1.886542 GTTTTGGGAGGGTGATGACAC 59.113 52.381 0.00 0.00 45.27 3.67
5922 8204 1.780309 AGTTTTGGGAGGGTGATGACA 59.220 47.619 0.00 0.00 0.00 3.58
5937 8219 2.139118 GAGTCGCTTGCTCAGAGTTTT 58.861 47.619 0.00 0.00 33.45 2.43
5959 8298 3.578716 AGATGTTCCTCTTCCACGAAAGA 59.421 43.478 0.00 0.00 34.22 2.52
5967 8306 4.202274 GCTAAGGGTAGATGTTCCTCTTCC 60.202 50.000 0.00 0.00 33.26 3.46
5981 8320 4.221530 GCTAGGAAAGTAGGCTAAGGGTA 58.778 47.826 0.00 0.00 0.00 3.69
5988 8327 1.112950 GGTCGCTAGGAAAGTAGGCT 58.887 55.000 0.00 0.00 0.00 4.58
6004 8343 1.602377 CTCCGTTGTTCCAAACAGGTC 59.398 52.381 0.00 0.00 43.27 3.85
6021 8360 0.537188 TCCTTCAGATGCGGAACTCC 59.463 55.000 0.00 0.00 0.00 3.85
6023 8362 2.237143 TCATTCCTTCAGATGCGGAACT 59.763 45.455 5.83 0.00 39.43 3.01
6024 8363 2.632377 TCATTCCTTCAGATGCGGAAC 58.368 47.619 5.83 0.00 39.43 3.62
6025 8364 3.348647 TTCATTCCTTCAGATGCGGAA 57.651 42.857 6.08 6.08 40.75 4.30
6027 8366 4.644103 AAATTCATTCCTTCAGATGCGG 57.356 40.909 0.00 0.00 0.00 5.69
6083 8429 5.871524 TGTTTGTTTGTTTGTGTGTATGCAT 59.128 32.000 3.79 3.79 0.00 3.96
6123 8473 1.875009 TGCACTCTTCTCTTGCACTG 58.125 50.000 0.00 0.00 41.29 3.66
6132 8482 1.002430 TCCATTCGCTTGCACTCTTCT 59.998 47.619 0.00 0.00 0.00 2.85
6214 8564 0.324923 TTCTAGCACGCCCCTTCCTA 60.325 55.000 0.00 0.00 0.00 2.94
6229 8582 1.065701 GGCGAGAGATGCGTCTTTCTA 59.934 52.381 20.68 0.00 34.34 2.10
6245 8598 1.519246 CAGCAGAGGAAGATGGCGA 59.481 57.895 0.00 0.00 0.00 5.54
6246 8599 1.523258 CCAGCAGAGGAAGATGGCG 60.523 63.158 0.00 0.00 35.56 5.69
6382 8737 2.610438 ATTCAGGTGGTGGAAAGCAT 57.390 45.000 0.00 0.00 0.00 3.79
6412 8768 1.248486 GGACAAAAAGCAGGAGGGTC 58.752 55.000 0.00 0.00 0.00 4.46
6418 8774 4.309933 GAAATTCCTGGACAAAAAGCAGG 58.690 43.478 0.00 0.00 0.00 4.85
6420 8776 3.383185 ACGAAATTCCTGGACAAAAAGCA 59.617 39.130 0.00 0.00 0.00 3.91
6421 8777 3.735746 CACGAAATTCCTGGACAAAAAGC 59.264 43.478 0.00 0.00 0.00 3.51
6422 8778 3.735746 GCACGAAATTCCTGGACAAAAAG 59.264 43.478 0.00 0.00 0.00 2.27
6474 8831 4.101448 CTCCTGAGGGGCCAACGG 62.101 72.222 4.39 3.23 34.39 4.44
6475 8832 4.101448 CCTCCTGAGGGGCCAACG 62.101 72.222 4.39 0.00 44.87 4.10
6497 8854 1.682344 GCTCCCAGGGGCGATTTTT 60.682 57.895 5.33 0.00 34.68 1.94
6498 8855 2.043953 GCTCCCAGGGGCGATTTT 60.044 61.111 5.33 0.00 34.68 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.