Multiple sequence alignment - TraesCS5B01G099900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G099900 chr5B 100.000 3031 0 0 1 3031 132617056 132614026 0.000000e+00 5598.0
1 TraesCS5B01G099900 chr5B 92.361 144 8 2 1936 2079 135522995 135522855 5.120000e-48 202.0
2 TraesCS5B01G099900 chr5B 100.000 86 0 0 2766 2851 248809970 248810055 3.130000e-35 159.0
3 TraesCS5B01G099900 chr5A 93.919 1891 85 17 895 2767 130123634 130121756 0.000000e+00 2828.0
4 TraesCS5B01G099900 chr5A 87.868 544 62 3 1 541 288272780 288272238 1.190000e-178 636.0
5 TraesCS5B01G099900 chr5A 93.514 185 8 3 2850 3031 130121757 130121574 3.850000e-69 272.0
6 TraesCS5B01G099900 chr5D 92.279 1878 72 24 895 2749 119762157 119760330 0.000000e+00 2597.0
7 TraesCS5B01G099900 chr5D 76.067 539 114 12 1 532 412350959 412351489 1.790000e-67 267.0
8 TraesCS5B01G099900 chr5D 75.696 539 117 13 2 533 240526893 240527424 1.080000e-64 257.0
9 TraesCS5B01G099900 chr5D 75.601 541 114 16 1 532 409543590 409543059 5.020000e-63 252.0
10 TraesCS5B01G099900 chr7B 95.031 322 12 4 538 858 287161115 287160797 1.250000e-138 503.0
11 TraesCS5B01G099900 chr7B 88.785 321 33 3 539 858 592908372 592908054 1.020000e-104 390.0
12 TraesCS5B01G099900 chr7B 98.864 88 1 0 2765 2852 605909613 605909700 1.120000e-34 158.0
13 TraesCS5B01G099900 chr3D 90.625 320 29 1 539 858 540374131 540373813 1.000000e-114 424.0
14 TraesCS5B01G099900 chr3D 75.605 537 121 9 2 533 406414055 406413524 1.080000e-64 257.0
15 TraesCS5B01G099900 chr4B 87.888 322 38 1 537 858 435170214 435170534 7.930000e-101 377.0
16 TraesCS5B01G099900 chr2D 87.888 322 37 2 538 858 642785969 642786289 7.930000e-101 377.0
17 TraesCS5B01G099900 chr2D 86.335 322 40 4 539 858 10069660 10069341 6.220000e-92 348.0
18 TraesCS5B01G099900 chr2D 76.164 537 118 9 2 533 650481950 650482481 1.070000e-69 274.0
19 TraesCS5B01G099900 chr2D 73.866 551 119 23 1 540 528626340 528625804 2.380000e-46 196.0
20 TraesCS5B01G099900 chr6B 89.000 300 33 0 559 858 213540441 213540740 3.690000e-99 372.0
21 TraesCS5B01G099900 chr6B 98.837 86 1 0 2766 2851 62471188 62471273 1.460000e-33 154.0
22 TraesCS5B01G099900 chr1A 86.646 322 38 4 538 858 544570543 544570226 4.810000e-93 351.0
23 TraesCS5B01G099900 chr1A 73.889 540 122 16 1 532 458211946 458212474 6.630000e-47 198.0
24 TraesCS5B01G099900 chr6A 86.335 322 40 3 538 858 114838911 114838593 6.220000e-92 348.0
25 TraesCS5B01G099900 chr1D 76.449 535 117 8 2 531 431511934 431511404 6.400000e-72 281.0
26 TraesCS5B01G099900 chr2A 97.241 145 4 0 2049 2193 181737176 181737320 2.330000e-61 246.0
27 TraesCS5B01G099900 chr3A 95.172 145 7 0 2049 2193 29706255 29706399 2.350000e-56 230.0
28 TraesCS5B01G099900 chr3A 98.039 51 1 0 2143 2193 552410825 552410775 4.160000e-14 89.8
29 TraesCS5B01G099900 chr7D 74.440 536 128 8 1 532 118817627 118818157 3.930000e-54 222.0
30 TraesCS5B01G099900 chr2B 74.057 424 100 9 1 419 51864363 51863945 6.720000e-37 165.0
31 TraesCS5B01G099900 chr1B 94.175 103 4 2 2766 2867 286320488 286320589 4.050000e-34 156.0
32 TraesCS5B01G099900 chr7A 95.789 95 3 1 2765 2859 308450900 308450807 5.230000e-33 152.0
33 TraesCS5B01G099900 chr7A 91.509 106 5 3 2747 2851 114027064 114027166 3.150000e-30 143.0
34 TraesCS5B01G099900 chr3B 93.878 98 6 0 2758 2855 756059739 756059642 6.770000e-32 148.0
35 TraesCS5B01G099900 chr3B 89.286 112 10 2 2765 2874 395693756 395693645 4.070000e-29 139.0
36 TraesCS5B01G099900 chr4A 91.429 105 8 1 2749 2852 75244979 75244875 3.150000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G099900 chr5B 132614026 132617056 3030 True 5598 5598 100.0000 1 3031 1 chr5B.!!$R1 3030
1 TraesCS5B01G099900 chr5A 130121574 130123634 2060 True 1550 2828 93.7165 895 3031 2 chr5A.!!$R2 2136
2 TraesCS5B01G099900 chr5A 288272238 288272780 542 True 636 636 87.8680 1 541 1 chr5A.!!$R1 540
3 TraesCS5B01G099900 chr5D 119760330 119762157 1827 True 2597 2597 92.2790 895 2749 1 chr5D.!!$R1 1854
4 TraesCS5B01G099900 chr5D 412350959 412351489 530 False 267 267 76.0670 1 532 1 chr5D.!!$F2 531
5 TraesCS5B01G099900 chr5D 240526893 240527424 531 False 257 257 75.6960 2 533 1 chr5D.!!$F1 531
6 TraesCS5B01G099900 chr5D 409543059 409543590 531 True 252 252 75.6010 1 532 1 chr5D.!!$R2 531
7 TraesCS5B01G099900 chr3D 406413524 406414055 531 True 257 257 75.6050 2 533 1 chr3D.!!$R1 531
8 TraesCS5B01G099900 chr2D 650481950 650482481 531 False 274 274 76.1640 2 533 1 chr2D.!!$F2 531
9 TraesCS5B01G099900 chr1D 431511404 431511934 530 True 281 281 76.4490 2 531 1 chr1D.!!$R1 529
10 TraesCS5B01G099900 chr7D 118817627 118818157 530 False 222 222 74.4400 1 532 1 chr7D.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 847 0.106918 AAAACTGTCAAGGCCACCGA 60.107 50.0 5.01 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2085 2103 0.036732 AGCTTCTCCATGCGGAAACA 59.963 50.0 0.0 0.0 42.21 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 3.892588 CCTTACCCAAACCTGCAACTTAA 59.107 43.478 0.00 0.00 0.00 1.85
83 85 6.040278 TGCATGTGTGTTTCAAAATCCTCTAA 59.960 34.615 0.00 0.00 0.00 2.10
170 172 0.380378 TCAAACTCCGCAGCAAACAC 59.620 50.000 0.00 0.00 0.00 3.32
180 183 0.890683 CAGCAAACACATTCTCCCCC 59.109 55.000 0.00 0.00 0.00 5.40
183 186 1.901833 GCAAACACATTCTCCCCCAAT 59.098 47.619 0.00 0.00 0.00 3.16
198 201 0.609131 CCAATGGGCGAAAGGACAGT 60.609 55.000 0.00 0.00 0.00 3.55
246 249 2.381911 AGGGCATTGCAGATAGTTTGG 58.618 47.619 11.39 0.00 0.00 3.28
261 264 9.217278 CAGATAGTTTGGATATGGAGAAGATTG 57.783 37.037 0.00 0.00 0.00 2.67
285 288 1.065199 TGCAAGACCTTCCCTGCTATG 60.065 52.381 0.00 0.00 0.00 2.23
309 312 1.153823 CTTCGTCGGTTCGCCATCT 60.154 57.895 0.00 0.00 37.00 2.90
313 316 1.011968 CGTCGGTTCGCCATCTTCAA 61.012 55.000 0.00 0.00 37.00 2.69
388 394 1.606531 GCCTCCTCCATCTGTGCTT 59.393 57.895 0.00 0.00 0.00 3.91
464 470 4.854399 GATGTAGACATCCTCTTCGTGAG 58.146 47.826 10.96 2.13 45.24 3.51
501 507 4.957684 ATGAGATCTGCGGGCGCG 62.958 66.667 20.05 20.05 45.51 6.86
535 543 2.663188 CCTAATCGCCGCCAGAGC 60.663 66.667 0.00 0.00 0.00 4.09
547 555 2.774439 GCCAGAGCGTTTTCTTTTGA 57.226 45.000 0.00 0.00 0.00 2.69
548 556 3.078594 GCCAGAGCGTTTTCTTTTGAA 57.921 42.857 0.00 0.00 36.52 2.69
549 557 2.789339 GCCAGAGCGTTTTCTTTTGAAC 59.211 45.455 0.00 0.00 38.30 3.18
551 559 3.035942 CAGAGCGTTTTCTTTTGAACGG 58.964 45.455 10.13 0.00 46.26 4.44
554 562 2.788030 GCGTTTTCTTTTGAACGGTCA 58.212 42.857 0.00 0.00 46.26 4.02
555 563 2.528688 GCGTTTTCTTTTGAACGGTCAC 59.471 45.455 0.44 0.00 46.26 3.67
556 564 3.103007 CGTTTTCTTTTGAACGGTCACC 58.897 45.455 0.44 0.00 43.44 4.02
578 586 2.993853 GGAGAGCTTCCCCACCTG 59.006 66.667 0.00 0.00 40.37 4.00
579 587 1.613630 GGAGAGCTTCCCCACCTGA 60.614 63.158 0.00 0.00 40.37 3.86
580 588 1.201429 GGAGAGCTTCCCCACCTGAA 61.201 60.000 0.00 0.00 40.37 3.02
581 589 0.915364 GAGAGCTTCCCCACCTGAAT 59.085 55.000 0.00 0.00 0.00 2.57
582 590 2.119495 GAGAGCTTCCCCACCTGAATA 58.881 52.381 0.00 0.00 0.00 1.75
583 591 2.708325 GAGAGCTTCCCCACCTGAATAT 59.292 50.000 0.00 0.00 0.00 1.28
584 592 3.904339 GAGAGCTTCCCCACCTGAATATA 59.096 47.826 0.00 0.00 0.00 0.86
585 593 4.507342 AGAGCTTCCCCACCTGAATATAT 58.493 43.478 0.00 0.00 0.00 0.86
586 594 4.916424 AGAGCTTCCCCACCTGAATATATT 59.084 41.667 0.00 0.00 0.00 1.28
587 595 6.091555 AGAGCTTCCCCACCTGAATATATTA 58.908 40.000 0.00 0.00 0.00 0.98
588 596 6.013293 AGAGCTTCCCCACCTGAATATATTAC 60.013 42.308 0.00 0.00 0.00 1.89
589 597 5.014228 AGCTTCCCCACCTGAATATATTACC 59.986 44.000 0.00 0.00 0.00 2.85
590 598 5.222048 GCTTCCCCACCTGAATATATTACCA 60.222 44.000 0.00 0.00 0.00 3.25
591 599 5.836024 TCCCCACCTGAATATATTACCAC 57.164 43.478 0.00 0.00 0.00 4.16
592 600 4.600111 TCCCCACCTGAATATATTACCACC 59.400 45.833 0.00 0.00 0.00 4.61
593 601 4.263771 CCCCACCTGAATATATTACCACCC 60.264 50.000 0.00 0.00 0.00 4.61
594 602 4.352595 CCCACCTGAATATATTACCACCCA 59.647 45.833 0.00 0.00 0.00 4.51
595 603 5.163034 CCCACCTGAATATATTACCACCCAA 60.163 44.000 0.00 0.00 0.00 4.12
596 604 6.369629 CCACCTGAATATATTACCACCCAAA 58.630 40.000 0.00 0.00 0.00 3.28
597 605 7.010160 CCACCTGAATATATTACCACCCAAAT 58.990 38.462 0.00 0.00 0.00 2.32
598 606 7.039784 CCACCTGAATATATTACCACCCAAATG 60.040 40.741 0.00 0.00 0.00 2.32
599 607 7.723616 CACCTGAATATATTACCACCCAAATGA 59.276 37.037 0.00 0.00 0.00 2.57
600 608 7.944554 ACCTGAATATATTACCACCCAAATGAG 59.055 37.037 0.00 0.00 0.00 2.90
601 609 8.163408 CCTGAATATATTACCACCCAAATGAGA 58.837 37.037 0.00 0.00 0.00 3.27
602 610 9.745018 CTGAATATATTACCACCCAAATGAGAT 57.255 33.333 0.00 0.00 0.00 2.75
603 611 9.519191 TGAATATATTACCACCCAAATGAGATG 57.481 33.333 0.00 0.00 0.00 2.90
604 612 9.520515 GAATATATTACCACCCAAATGAGATGT 57.479 33.333 0.00 0.00 0.00 3.06
605 613 9.520515 AATATATTACCACCCAAATGAGATGTC 57.479 33.333 0.00 0.00 0.00 3.06
606 614 2.113860 ACCACCCAAATGAGATGTCG 57.886 50.000 0.00 0.00 0.00 4.35
607 615 1.628340 ACCACCCAAATGAGATGTCGA 59.372 47.619 0.00 0.00 0.00 4.20
608 616 2.283298 CCACCCAAATGAGATGTCGAG 58.717 52.381 0.00 0.00 0.00 4.04
609 617 2.093500 CCACCCAAATGAGATGTCGAGA 60.093 50.000 0.00 0.00 0.00 4.04
610 618 3.599343 CACCCAAATGAGATGTCGAGAA 58.401 45.455 0.00 0.00 0.00 2.87
611 619 4.194640 CACCCAAATGAGATGTCGAGAAT 58.805 43.478 0.00 0.00 0.00 2.40
612 620 4.637534 CACCCAAATGAGATGTCGAGAATT 59.362 41.667 0.00 0.00 0.00 2.17
613 621 5.817296 CACCCAAATGAGATGTCGAGAATTA 59.183 40.000 0.00 0.00 0.00 1.40
614 622 5.817816 ACCCAAATGAGATGTCGAGAATTAC 59.182 40.000 0.00 0.00 0.00 1.89
615 623 5.817296 CCCAAATGAGATGTCGAGAATTACA 59.183 40.000 0.00 0.00 0.00 2.41
616 624 6.484643 CCCAAATGAGATGTCGAGAATTACAT 59.515 38.462 0.00 0.00 39.00 2.29
623 631 4.456280 TGTCGAGAATTACATCAGCAGT 57.544 40.909 0.00 0.00 0.00 4.40
624 632 5.576447 TGTCGAGAATTACATCAGCAGTA 57.424 39.130 0.00 0.00 0.00 2.74
625 633 5.340803 TGTCGAGAATTACATCAGCAGTAC 58.659 41.667 0.00 0.00 0.00 2.73
626 634 4.438145 GTCGAGAATTACATCAGCAGTACG 59.562 45.833 0.00 0.00 0.00 3.67
627 635 3.731216 CGAGAATTACATCAGCAGTACGG 59.269 47.826 0.00 0.00 0.00 4.02
628 636 4.683832 GAGAATTACATCAGCAGTACGGT 58.316 43.478 0.00 0.00 0.00 4.83
629 637 5.086104 AGAATTACATCAGCAGTACGGTT 57.914 39.130 0.00 0.00 0.00 4.44
630 638 6.216801 AGAATTACATCAGCAGTACGGTTA 57.783 37.500 0.00 0.00 0.00 2.85
631 639 6.040878 AGAATTACATCAGCAGTACGGTTAC 58.959 40.000 0.00 0.00 0.00 2.50
632 640 4.787260 TTACATCAGCAGTACGGTTACA 57.213 40.909 0.00 0.00 0.00 2.41
633 641 3.671008 ACATCAGCAGTACGGTTACAA 57.329 42.857 0.00 0.00 0.00 2.41
634 642 3.997762 ACATCAGCAGTACGGTTACAAA 58.002 40.909 0.00 0.00 0.00 2.83
635 643 4.575885 ACATCAGCAGTACGGTTACAAAT 58.424 39.130 0.00 0.00 0.00 2.32
636 644 5.001232 ACATCAGCAGTACGGTTACAAATT 58.999 37.500 0.00 0.00 0.00 1.82
637 645 5.121768 ACATCAGCAGTACGGTTACAAATTC 59.878 40.000 0.00 0.00 0.00 2.17
638 646 4.633175 TCAGCAGTACGGTTACAAATTCA 58.367 39.130 0.00 0.00 0.00 2.57
639 647 4.688879 TCAGCAGTACGGTTACAAATTCAG 59.311 41.667 0.00 0.00 0.00 3.02
640 648 3.435671 AGCAGTACGGTTACAAATTCAGC 59.564 43.478 0.00 0.00 0.00 4.26
641 649 3.435671 GCAGTACGGTTACAAATTCAGCT 59.564 43.478 0.00 0.00 0.00 4.24
642 650 4.628333 GCAGTACGGTTACAAATTCAGCTA 59.372 41.667 0.00 0.00 0.00 3.32
643 651 5.220416 GCAGTACGGTTACAAATTCAGCTAG 60.220 44.000 0.00 0.00 0.00 3.42
644 652 6.097356 CAGTACGGTTACAAATTCAGCTAGA 58.903 40.000 0.00 0.00 0.00 2.43
645 653 6.588756 CAGTACGGTTACAAATTCAGCTAGAA 59.411 38.462 0.00 0.00 41.28 2.10
646 654 6.812160 AGTACGGTTACAAATTCAGCTAGAAG 59.188 38.462 0.00 0.00 40.15 2.85
647 655 4.935808 ACGGTTACAAATTCAGCTAGAAGG 59.064 41.667 0.00 0.00 40.15 3.46
648 656 4.332819 CGGTTACAAATTCAGCTAGAAGGG 59.667 45.833 0.00 0.00 40.15 3.95
649 657 4.640647 GGTTACAAATTCAGCTAGAAGGGG 59.359 45.833 0.00 0.00 40.15 4.79
650 658 5.254115 GTTACAAATTCAGCTAGAAGGGGT 58.746 41.667 0.00 0.00 40.15 4.95
651 659 4.388577 ACAAATTCAGCTAGAAGGGGTT 57.611 40.909 0.00 0.00 40.15 4.11
652 660 4.082125 ACAAATTCAGCTAGAAGGGGTTG 58.918 43.478 0.00 0.55 40.15 3.77
653 661 2.426842 ATTCAGCTAGAAGGGGTTGC 57.573 50.000 0.00 0.00 40.15 4.17
654 662 1.064003 TTCAGCTAGAAGGGGTTGCA 58.936 50.000 0.00 0.00 0.00 4.08
655 663 0.615331 TCAGCTAGAAGGGGTTGCAG 59.385 55.000 0.00 0.00 0.00 4.41
656 664 0.615331 CAGCTAGAAGGGGTTGCAGA 59.385 55.000 0.00 0.00 0.00 4.26
657 665 0.908198 AGCTAGAAGGGGTTGCAGAG 59.092 55.000 0.00 0.00 0.00 3.35
658 666 0.107459 GCTAGAAGGGGTTGCAGAGG 60.107 60.000 0.00 0.00 0.00 3.69
659 667 1.573108 CTAGAAGGGGTTGCAGAGGA 58.427 55.000 0.00 0.00 0.00 3.71
660 668 1.484240 CTAGAAGGGGTTGCAGAGGAG 59.516 57.143 0.00 0.00 0.00 3.69
661 669 0.178891 AGAAGGGGTTGCAGAGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
662 670 0.693049 GAAGGGGTTGCAGAGGAGAA 59.307 55.000 0.00 0.00 0.00 2.87
663 671 1.073923 GAAGGGGTTGCAGAGGAGAAA 59.926 52.381 0.00 0.00 0.00 2.52
664 672 1.149101 AGGGGTTGCAGAGGAGAAAA 58.851 50.000 0.00 0.00 0.00 2.29
665 673 1.499007 AGGGGTTGCAGAGGAGAAAAA 59.501 47.619 0.00 0.00 0.00 1.94
666 674 1.889170 GGGGTTGCAGAGGAGAAAAAG 59.111 52.381 0.00 0.00 0.00 2.27
667 675 2.587522 GGGTTGCAGAGGAGAAAAAGT 58.412 47.619 0.00 0.00 0.00 2.66
668 676 2.294512 GGGTTGCAGAGGAGAAAAAGTG 59.705 50.000 0.00 0.00 0.00 3.16
669 677 2.952310 GGTTGCAGAGGAGAAAAAGTGT 59.048 45.455 0.00 0.00 0.00 3.55
670 678 4.134563 GGTTGCAGAGGAGAAAAAGTGTA 58.865 43.478 0.00 0.00 0.00 2.90
671 679 4.214332 GGTTGCAGAGGAGAAAAAGTGTAG 59.786 45.833 0.00 0.00 0.00 2.74
672 680 3.403038 TGCAGAGGAGAAAAAGTGTAGC 58.597 45.455 0.00 0.00 0.00 3.58
673 681 2.744741 GCAGAGGAGAAAAAGTGTAGCC 59.255 50.000 0.00 0.00 0.00 3.93
674 682 3.807209 GCAGAGGAGAAAAAGTGTAGCCA 60.807 47.826 0.00 0.00 0.00 4.75
675 683 3.748568 CAGAGGAGAAAAAGTGTAGCCAC 59.251 47.826 0.00 0.00 42.17 5.01
685 693 2.743636 GTGTAGCCACTGTCTAGCAA 57.256 50.000 0.00 0.00 38.61 3.91
686 694 3.040147 GTGTAGCCACTGTCTAGCAAA 57.960 47.619 0.00 0.00 38.61 3.68
687 695 2.996621 GTGTAGCCACTGTCTAGCAAAG 59.003 50.000 0.00 0.00 38.61 2.77
688 696 2.897326 TGTAGCCACTGTCTAGCAAAGA 59.103 45.455 0.00 0.00 0.00 2.52
689 697 3.515502 TGTAGCCACTGTCTAGCAAAGAT 59.484 43.478 0.00 0.00 36.36 2.40
690 698 4.709886 TGTAGCCACTGTCTAGCAAAGATA 59.290 41.667 0.00 0.00 36.36 1.98
691 699 5.363868 TGTAGCCACTGTCTAGCAAAGATAT 59.636 40.000 0.00 0.00 36.36 1.63
692 700 5.365021 AGCCACTGTCTAGCAAAGATATT 57.635 39.130 0.00 0.00 36.36 1.28
693 701 5.121811 AGCCACTGTCTAGCAAAGATATTG 58.878 41.667 0.00 0.00 36.36 1.90
694 702 4.878397 GCCACTGTCTAGCAAAGATATTGT 59.122 41.667 0.00 0.00 36.36 2.71
695 703 5.007136 GCCACTGTCTAGCAAAGATATTGTC 59.993 44.000 0.00 0.00 36.36 3.18
696 704 6.344500 CCACTGTCTAGCAAAGATATTGTCT 58.656 40.000 0.00 0.00 39.43 3.41
698 706 7.010923 CCACTGTCTAGCAAAGATATTGTCTTC 59.989 40.741 0.00 0.00 46.39 2.87
699 707 6.754209 ACTGTCTAGCAAAGATATTGTCTTCG 59.246 38.462 0.00 0.00 46.39 3.79
700 708 6.042777 TGTCTAGCAAAGATATTGTCTTCGG 58.957 40.000 0.00 0.00 46.39 4.30
701 709 5.050490 TCTAGCAAAGATATTGTCTTCGGC 58.950 41.667 10.04 10.04 46.39 5.54
702 710 2.945668 AGCAAAGATATTGTCTTCGGCC 59.054 45.455 12.82 0.00 46.39 6.13
703 711 2.945668 GCAAAGATATTGTCTTCGGCCT 59.054 45.455 0.00 0.00 46.39 5.19
704 712 3.378427 GCAAAGATATTGTCTTCGGCCTT 59.622 43.478 0.00 0.00 46.39 4.35
705 713 4.142381 GCAAAGATATTGTCTTCGGCCTTT 60.142 41.667 0.00 0.00 46.39 3.11
706 714 5.622233 GCAAAGATATTGTCTTCGGCCTTTT 60.622 40.000 0.00 0.00 46.39 2.27
707 715 6.389906 CAAAGATATTGTCTTCGGCCTTTTT 58.610 36.000 0.00 0.00 46.39 1.94
708 716 5.567138 AGATATTGTCTTCGGCCTTTTTG 57.433 39.130 0.00 0.00 31.47 2.44
709 717 5.253330 AGATATTGTCTTCGGCCTTTTTGA 58.747 37.500 0.00 0.00 31.47 2.69
710 718 5.710099 AGATATTGTCTTCGGCCTTTTTGAA 59.290 36.000 0.00 0.00 31.47 2.69
711 719 4.664150 ATTGTCTTCGGCCTTTTTGAAA 57.336 36.364 0.00 0.00 0.00 2.69
712 720 3.430333 TGTCTTCGGCCTTTTTGAAAC 57.570 42.857 0.00 0.00 0.00 2.78
713 721 2.100087 TGTCTTCGGCCTTTTTGAAACC 59.900 45.455 0.00 0.00 0.00 3.27
714 722 1.335496 TCTTCGGCCTTTTTGAAACCG 59.665 47.619 0.00 0.00 45.15 4.44
716 724 3.949031 CGGCCTTTTTGAAACCGAA 57.051 47.368 0.00 0.00 46.71 4.30
717 725 2.211353 CGGCCTTTTTGAAACCGAAA 57.789 45.000 0.00 0.00 46.71 3.46
718 726 2.541556 CGGCCTTTTTGAAACCGAAAA 58.458 42.857 0.00 0.00 46.71 2.29
719 727 2.283086 CGGCCTTTTTGAAACCGAAAAC 59.717 45.455 0.00 0.00 46.71 2.43
720 728 2.610374 GGCCTTTTTGAAACCGAAAACC 59.390 45.455 0.00 0.00 0.00 3.27
721 729 2.610374 GCCTTTTTGAAACCGAAAACCC 59.390 45.455 0.00 0.00 0.00 4.11
722 730 3.863041 CCTTTTTGAAACCGAAAACCCA 58.137 40.909 0.00 0.00 0.00 4.51
723 731 3.868661 CCTTTTTGAAACCGAAAACCCAG 59.131 43.478 0.00 0.00 0.00 4.45
724 732 4.382147 CCTTTTTGAAACCGAAAACCCAGA 60.382 41.667 0.00 0.00 0.00 3.86
725 733 4.379339 TTTTGAAACCGAAAACCCAGAG 57.621 40.909 0.00 0.00 0.00 3.35
726 734 3.284793 TTGAAACCGAAAACCCAGAGA 57.715 42.857 0.00 0.00 0.00 3.10
727 735 2.846193 TGAAACCGAAAACCCAGAGAG 58.154 47.619 0.00 0.00 0.00 3.20
728 736 2.436542 TGAAACCGAAAACCCAGAGAGA 59.563 45.455 0.00 0.00 0.00 3.10
729 737 2.841442 AACCGAAAACCCAGAGAGAG 57.159 50.000 0.00 0.00 0.00 3.20
730 738 2.011122 ACCGAAAACCCAGAGAGAGA 57.989 50.000 0.00 0.00 0.00 3.10
731 739 2.326428 ACCGAAAACCCAGAGAGAGAA 58.674 47.619 0.00 0.00 0.00 2.87
732 740 2.704065 ACCGAAAACCCAGAGAGAGAAA 59.296 45.455 0.00 0.00 0.00 2.52
733 741 3.328050 ACCGAAAACCCAGAGAGAGAAAT 59.672 43.478 0.00 0.00 0.00 2.17
734 742 4.202472 ACCGAAAACCCAGAGAGAGAAATT 60.202 41.667 0.00 0.00 0.00 1.82
735 743 4.762251 CCGAAAACCCAGAGAGAGAAATTT 59.238 41.667 0.00 0.00 0.00 1.82
736 744 5.335191 CCGAAAACCCAGAGAGAGAAATTTG 60.335 44.000 0.00 0.00 0.00 2.32
737 745 5.459536 AAAACCCAGAGAGAGAAATTTGC 57.540 39.130 0.00 0.00 0.00 3.68
738 746 4.379302 AACCCAGAGAGAGAAATTTGCT 57.621 40.909 0.00 0.00 0.00 3.91
739 747 5.505181 AACCCAGAGAGAGAAATTTGCTA 57.495 39.130 0.00 0.00 0.00 3.49
740 748 4.837972 ACCCAGAGAGAGAAATTTGCTAC 58.162 43.478 0.00 0.00 0.00 3.58
741 749 4.287067 ACCCAGAGAGAGAAATTTGCTACA 59.713 41.667 0.00 0.00 0.00 2.74
742 750 5.221925 ACCCAGAGAGAGAAATTTGCTACAA 60.222 40.000 0.00 0.00 0.00 2.41
743 751 5.884792 CCCAGAGAGAGAAATTTGCTACAAT 59.115 40.000 0.00 0.00 0.00 2.71
744 752 7.050377 CCCAGAGAGAGAAATTTGCTACAATA 58.950 38.462 0.00 0.00 0.00 1.90
745 753 7.718753 CCCAGAGAGAGAAATTTGCTACAATAT 59.281 37.037 0.00 0.00 0.00 1.28
746 754 9.118300 CCAGAGAGAGAAATTTGCTACAATATT 57.882 33.333 0.00 0.00 0.00 1.28
754 762 9.722056 AGAAATTTGCTACAATATTTCTTAGCG 57.278 29.630 16.21 0.00 41.90 4.26
755 763 9.503427 GAAATTTGCTACAATATTTCTTAGCGT 57.497 29.630 0.00 0.00 39.92 5.07
758 766 8.712285 TTTGCTACAATATTTCTTAGCGTAGT 57.288 30.769 12.58 0.00 39.92 2.73
759 767 8.712285 TTGCTACAATATTTCTTAGCGTAGTT 57.288 30.769 12.58 0.00 39.92 2.24
760 768 8.712285 TGCTACAATATTTCTTAGCGTAGTTT 57.288 30.769 12.58 0.00 39.92 2.66
761 769 9.158233 TGCTACAATATTTCTTAGCGTAGTTTT 57.842 29.630 12.58 0.00 39.92 2.43
762 770 9.422196 GCTACAATATTTCTTAGCGTAGTTTTG 57.578 33.333 8.04 0.00 0.00 2.44
765 773 9.431887 ACAATATTTCTTAGCGTAGTTTTGAGA 57.568 29.630 0.00 0.00 0.00 3.27
766 774 9.907576 CAATATTTCTTAGCGTAGTTTTGAGAG 57.092 33.333 0.00 0.00 0.00 3.20
767 775 9.871238 AATATTTCTTAGCGTAGTTTTGAGAGA 57.129 29.630 0.00 0.00 0.00 3.10
768 776 7.820044 ATTTCTTAGCGTAGTTTTGAGAGAG 57.180 36.000 0.00 0.00 0.00 3.20
769 777 5.961396 TCTTAGCGTAGTTTTGAGAGAGT 57.039 39.130 0.00 0.00 0.00 3.24
770 778 5.700846 TCTTAGCGTAGTTTTGAGAGAGTG 58.299 41.667 0.00 0.00 0.00 3.51
771 779 3.305398 AGCGTAGTTTTGAGAGAGTGG 57.695 47.619 0.00 0.00 0.00 4.00
772 780 2.628657 AGCGTAGTTTTGAGAGAGTGGT 59.371 45.455 0.00 0.00 0.00 4.16
773 781 2.987821 GCGTAGTTTTGAGAGAGTGGTC 59.012 50.000 0.00 0.00 0.00 4.02
774 782 3.305471 GCGTAGTTTTGAGAGAGTGGTCT 60.305 47.826 0.00 0.00 34.86 3.85
775 783 4.796618 GCGTAGTTTTGAGAGAGTGGTCTT 60.797 45.833 0.00 0.00 30.97 3.01
776 784 4.918583 CGTAGTTTTGAGAGAGTGGTCTTC 59.081 45.833 0.00 0.00 30.97 2.87
777 785 3.983741 AGTTTTGAGAGAGTGGTCTTCG 58.016 45.455 0.00 0.00 30.97 3.79
778 786 3.385111 AGTTTTGAGAGAGTGGTCTTCGT 59.615 43.478 0.00 0.00 30.97 3.85
779 787 4.120589 GTTTTGAGAGAGTGGTCTTCGTT 58.879 43.478 0.00 0.00 30.97 3.85
780 788 4.402056 TTTGAGAGAGTGGTCTTCGTTT 57.598 40.909 0.00 0.00 30.97 3.60
781 789 3.644884 TGAGAGAGTGGTCTTCGTTTC 57.355 47.619 0.00 0.00 30.97 2.78
782 790 3.223435 TGAGAGAGTGGTCTTCGTTTCT 58.777 45.455 0.00 0.00 30.97 2.52
783 791 3.004839 TGAGAGAGTGGTCTTCGTTTCTG 59.995 47.826 0.00 0.00 30.97 3.02
784 792 3.223435 AGAGAGTGGTCTTCGTTTCTGA 58.777 45.455 0.00 0.00 30.97 3.27
785 793 3.637229 AGAGAGTGGTCTTCGTTTCTGAA 59.363 43.478 0.00 0.00 30.97 3.02
786 794 3.718815 AGAGTGGTCTTCGTTTCTGAAC 58.281 45.455 0.00 0.00 0.00 3.18
787 795 3.132289 AGAGTGGTCTTCGTTTCTGAACA 59.868 43.478 0.00 0.00 35.44 3.18
788 796 3.195661 AGTGGTCTTCGTTTCTGAACAC 58.804 45.455 0.00 0.00 45.62 3.32
789 797 2.933906 GTGGTCTTCGTTTCTGAACACA 59.066 45.455 5.64 0.00 44.90 3.72
790 798 3.372822 GTGGTCTTCGTTTCTGAACACAA 59.627 43.478 5.64 0.00 44.90 3.33
791 799 3.621268 TGGTCTTCGTTTCTGAACACAAG 59.379 43.478 0.00 0.00 35.44 3.16
792 800 3.869246 GGTCTTCGTTTCTGAACACAAGA 59.131 43.478 0.00 0.00 34.41 3.02
793 801 4.025647 GGTCTTCGTTTCTGAACACAAGAG 60.026 45.833 0.00 0.00 36.09 2.85
794 802 3.555956 TCTTCGTTTCTGAACACAAGAGC 59.444 43.478 0.00 0.00 33.02 4.09
795 803 2.210116 TCGTTTCTGAACACAAGAGCC 58.790 47.619 0.00 0.00 35.44 4.70
796 804 2.158957 TCGTTTCTGAACACAAGAGCCT 60.159 45.455 0.00 0.00 35.44 4.58
797 805 2.614057 CGTTTCTGAACACAAGAGCCTT 59.386 45.455 0.00 0.00 35.44 4.35
798 806 3.065371 CGTTTCTGAACACAAGAGCCTTT 59.935 43.478 0.00 0.00 35.44 3.11
799 807 4.602006 GTTTCTGAACACAAGAGCCTTTC 58.398 43.478 0.00 0.00 35.79 2.62
800 808 3.845781 TCTGAACACAAGAGCCTTTCT 57.154 42.857 0.00 0.00 37.93 2.52
801 809 3.733337 TCTGAACACAAGAGCCTTTCTC 58.267 45.455 0.00 0.00 42.21 2.87
802 810 2.478134 CTGAACACAAGAGCCTTTCTCG 59.522 50.000 0.00 0.00 46.44 4.04
803 811 2.102420 TGAACACAAGAGCCTTTCTCGA 59.898 45.455 0.00 0.00 46.44 4.04
804 812 2.447244 ACACAAGAGCCTTTCTCGAG 57.553 50.000 5.93 5.93 46.44 4.04
805 813 1.689273 ACACAAGAGCCTTTCTCGAGT 59.311 47.619 13.13 0.00 46.44 4.18
806 814 2.288518 ACACAAGAGCCTTTCTCGAGTC 60.289 50.000 13.13 0.98 46.44 3.36
807 815 1.273886 ACAAGAGCCTTTCTCGAGTCC 59.726 52.381 13.13 0.00 46.44 3.85
808 816 0.899019 AAGAGCCTTTCTCGAGTCCC 59.101 55.000 13.13 0.00 46.44 4.46
809 817 0.251832 AGAGCCTTTCTCGAGTCCCA 60.252 55.000 13.13 0.00 46.44 4.37
810 818 0.827368 GAGCCTTTCTCGAGTCCCAT 59.173 55.000 13.13 0.00 31.20 4.00
811 819 2.032620 GAGCCTTTCTCGAGTCCCATA 58.967 52.381 13.13 0.00 31.20 2.74
812 820 2.035321 GAGCCTTTCTCGAGTCCCATAG 59.965 54.545 13.13 0.00 31.20 2.23
813 821 1.757699 GCCTTTCTCGAGTCCCATAGT 59.242 52.381 13.13 0.00 0.00 2.12
814 822 2.168728 GCCTTTCTCGAGTCCCATAGTT 59.831 50.000 13.13 0.00 0.00 2.24
815 823 3.369576 GCCTTTCTCGAGTCCCATAGTTT 60.370 47.826 13.13 0.00 0.00 2.66
816 824 4.434520 CCTTTCTCGAGTCCCATAGTTTC 58.565 47.826 13.13 0.00 0.00 2.78
817 825 3.777465 TTCTCGAGTCCCATAGTTTCG 57.223 47.619 13.13 0.00 0.00 3.46
818 826 2.995283 TCTCGAGTCCCATAGTTTCGA 58.005 47.619 13.13 0.00 37.89 3.71
820 828 2.995283 TCGAGTCCCATAGTTTCGAGA 58.005 47.619 0.00 0.00 35.60 4.04
821 829 3.349927 TCGAGTCCCATAGTTTCGAGAA 58.650 45.455 0.00 0.00 35.60 2.87
822 830 3.760151 TCGAGTCCCATAGTTTCGAGAAA 59.240 43.478 0.00 0.00 35.60 2.52
823 831 4.219070 TCGAGTCCCATAGTTTCGAGAAAA 59.781 41.667 0.00 0.00 35.60 2.29
824 832 4.326548 CGAGTCCCATAGTTTCGAGAAAAC 59.673 45.833 0.00 0.00 46.36 2.43
833 841 3.618698 GTTTCGAGAAAACTGTCAAGGC 58.381 45.455 0.00 0.00 43.30 4.35
834 842 1.878953 TCGAGAAAACTGTCAAGGCC 58.121 50.000 0.00 0.00 0.00 5.19
835 843 1.140052 TCGAGAAAACTGTCAAGGCCA 59.860 47.619 5.01 0.00 0.00 5.36
836 844 1.264288 CGAGAAAACTGTCAAGGCCAC 59.736 52.381 5.01 0.00 0.00 5.01
837 845 1.609072 GAGAAAACTGTCAAGGCCACC 59.391 52.381 5.01 0.00 0.00 4.61
838 846 0.310854 GAAAACTGTCAAGGCCACCG 59.689 55.000 5.01 0.00 0.00 4.94
839 847 0.106918 AAAACTGTCAAGGCCACCGA 60.107 50.000 5.01 0.00 0.00 4.69
840 848 0.110486 AAACTGTCAAGGCCACCGAT 59.890 50.000 5.01 0.00 0.00 4.18
841 849 0.606401 AACTGTCAAGGCCACCGATG 60.606 55.000 5.01 0.00 0.00 3.84
850 858 2.591753 CCACCGATGGCCAGATGT 59.408 61.111 13.05 4.60 39.82 3.06
851 859 1.077501 CCACCGATGGCCAGATGTT 60.078 57.895 13.05 0.00 39.82 2.71
852 860 1.378882 CCACCGATGGCCAGATGTTG 61.379 60.000 13.05 4.31 39.82 3.33
860 868 4.319133 CCAGATGTTGGGGTTCCG 57.681 61.111 0.00 0.00 43.75 4.30
861 869 1.378514 CCAGATGTTGGGGTTCCGG 60.379 63.158 0.00 0.00 43.75 5.14
862 870 1.378514 CAGATGTTGGGGTTCCGGG 60.379 63.158 0.00 0.00 35.24 5.73
863 871 2.044352 GATGTTGGGGTTCCGGGG 60.044 66.667 0.00 0.00 35.24 5.73
864 872 2.533232 ATGTTGGGGTTCCGGGGA 60.533 61.111 0.00 0.00 35.24 4.81
865 873 2.144859 GATGTTGGGGTTCCGGGGAA 62.145 60.000 0.00 0.00 35.24 3.97
866 874 1.731324 ATGTTGGGGTTCCGGGGAAA 61.731 55.000 0.00 0.00 35.75 3.13
867 875 1.152504 GTTGGGGTTCCGGGGAAAA 60.153 57.895 0.00 0.00 35.75 2.29
868 876 0.759812 GTTGGGGTTCCGGGGAAAAA 60.760 55.000 0.00 0.00 35.75 1.94
869 877 0.759812 TTGGGGTTCCGGGGAAAAAC 60.760 55.000 0.00 0.00 35.75 2.43
870 878 1.152504 GGGGTTCCGGGGAAAAACA 60.153 57.895 0.00 0.00 35.75 2.83
871 879 0.543410 GGGGTTCCGGGGAAAAACAT 60.543 55.000 0.00 0.00 35.75 2.71
872 880 1.272592 GGGGTTCCGGGGAAAAACATA 60.273 52.381 0.00 0.00 35.75 2.29
873 881 2.624822 GGGGTTCCGGGGAAAAACATAT 60.625 50.000 0.00 0.00 35.75 1.78
874 882 3.372892 GGGGTTCCGGGGAAAAACATATA 60.373 47.826 0.00 0.00 35.75 0.86
875 883 3.633525 GGGTTCCGGGGAAAAACATATAC 59.366 47.826 0.00 0.00 35.75 1.47
876 884 3.313249 GGTTCCGGGGAAAAACATATACG 59.687 47.826 0.00 0.00 35.75 3.06
877 885 3.910568 TCCGGGGAAAAACATATACGT 57.089 42.857 0.00 0.00 0.00 3.57
878 886 3.533547 TCCGGGGAAAAACATATACGTG 58.466 45.455 0.00 0.00 0.00 4.49
879 887 2.032426 CCGGGGAAAAACATATACGTGC 59.968 50.000 0.00 0.00 0.00 5.34
880 888 2.285950 CGGGGAAAAACATATACGTGCG 60.286 50.000 0.00 0.00 0.00 5.34
881 889 2.679336 GGGGAAAAACATATACGTGCGT 59.321 45.455 0.00 2.05 0.00 5.24
882 890 3.486209 GGGGAAAAACATATACGTGCGTG 60.486 47.826 7.55 0.00 0.00 5.34
883 891 3.371591 GGGAAAAACATATACGTGCGTGA 59.628 43.478 7.55 0.00 0.00 4.35
884 892 4.142859 GGGAAAAACATATACGTGCGTGAA 60.143 41.667 7.55 0.00 0.00 3.18
885 893 5.383958 GGAAAAACATATACGTGCGTGAAA 58.616 37.500 7.55 0.00 0.00 2.69
886 894 6.025280 GGAAAAACATATACGTGCGTGAAAT 58.975 36.000 7.55 0.00 0.00 2.17
887 895 6.525280 GGAAAAACATATACGTGCGTGAAATT 59.475 34.615 7.55 0.00 0.00 1.82
888 896 7.061326 GGAAAAACATATACGTGCGTGAAATTT 59.939 33.333 7.55 0.00 0.00 1.82
889 897 6.846870 AAACATATACGTGCGTGAAATTTG 57.153 33.333 7.55 1.97 0.00 2.32
890 898 5.788055 ACATATACGTGCGTGAAATTTGA 57.212 34.783 7.55 0.00 0.00 2.69
891 899 6.358118 ACATATACGTGCGTGAAATTTGAT 57.642 33.333 7.55 0.00 0.00 2.57
892 900 6.781138 ACATATACGTGCGTGAAATTTGATT 58.219 32.000 7.55 0.00 0.00 2.57
893 901 6.905076 ACATATACGTGCGTGAAATTTGATTC 59.095 34.615 7.55 0.00 0.00 2.52
1023 1031 6.901300 AGAACTAACCCCATCCTAAATCTTC 58.099 40.000 0.00 0.00 0.00 2.87
1024 1032 5.648330 ACTAACCCCATCCTAAATCTTCC 57.352 43.478 0.00 0.00 0.00 3.46
1025 1033 3.973472 AACCCCATCCTAAATCTTCCC 57.027 47.619 0.00 0.00 0.00 3.97
1026 1034 2.144450 ACCCCATCCTAAATCTTCCCC 58.856 52.381 0.00 0.00 0.00 4.81
1027 1035 2.143602 CCCCATCCTAAATCTTCCCCA 58.856 52.381 0.00 0.00 0.00 4.96
1028 1036 2.517980 CCCCATCCTAAATCTTCCCCAA 59.482 50.000 0.00 0.00 0.00 4.12
1447 1464 3.986006 GGACGTGCCTCACCGTGA 61.986 66.667 0.00 0.29 0.00 4.35
1866 1883 1.833630 CTTGAGGCTGACATACTGGGA 59.166 52.381 0.00 0.00 0.00 4.37
1908 1925 1.815421 CGGGAGATTGGAGGCAACG 60.815 63.158 0.00 0.00 46.39 4.10
2078 2096 3.057315 CCACTGCCTGTTTCCATGTAAAG 60.057 47.826 0.00 0.00 0.00 1.85
2079 2097 3.569701 CACTGCCTGTTTCCATGTAAAGT 59.430 43.478 0.00 0.00 0.00 2.66
2081 2099 5.240623 CACTGCCTGTTTCCATGTAAAGTTA 59.759 40.000 0.00 0.00 0.00 2.24
2082 2100 6.010219 ACTGCCTGTTTCCATGTAAAGTTAT 58.990 36.000 0.00 0.00 0.00 1.89
2083 2101 7.120579 CACTGCCTGTTTCCATGTAAAGTTATA 59.879 37.037 0.00 0.00 0.00 0.98
2085 2103 8.588290 TGCCTGTTTCCATGTAAAGTTATAAT 57.412 30.769 0.00 0.00 0.00 1.28
2201 2220 2.629617 AGCTTTTCTGGGACAACAATGG 59.370 45.455 0.00 0.00 38.70 3.16
2213 2232 5.186198 GGACAACAATGGATACTAGTGCTT 58.814 41.667 5.39 0.00 37.61 3.91
2256 2283 4.437682 TTGCCTGACCTATATTTCTGGG 57.562 45.455 8.08 0.00 32.77 4.45
2257 2284 2.711009 TGCCTGACCTATATTTCTGGGG 59.289 50.000 8.08 0.00 32.77 4.96
2263 2290 3.589288 GACCTATATTTCTGGGGCCTGAT 59.411 47.826 0.84 0.00 0.00 2.90
2281 2308 5.466819 CCTGATTTAATATGGCATGCACTG 58.533 41.667 21.36 0.00 0.00 3.66
2311 2346 7.585286 TGCTATTTTGAATTTGTGATGAAGC 57.415 32.000 0.00 0.00 0.00 3.86
2312 2347 7.153315 TGCTATTTTGAATTTGTGATGAAGCA 58.847 30.769 0.00 0.00 0.00 3.91
2313 2348 7.116662 TGCTATTTTGAATTTGTGATGAAGCAC 59.883 33.333 0.00 0.00 39.22 4.40
2314 2349 5.886715 TTTTGAATTTGTGATGAAGCACG 57.113 34.783 0.00 0.00 41.63 5.34
2315 2350 3.557577 TGAATTTGTGATGAAGCACGG 57.442 42.857 0.00 0.00 41.63 4.94
2316 2351 3.145286 TGAATTTGTGATGAAGCACGGA 58.855 40.909 0.00 0.00 41.63 4.69
2317 2352 3.567585 TGAATTTGTGATGAAGCACGGAA 59.432 39.130 0.00 0.00 41.63 4.30
2318 2353 3.837213 ATTTGTGATGAAGCACGGAAG 57.163 42.857 0.00 0.00 41.63 3.46
2510 2550 4.278419 GGATTATGGTGTTGGCTTACATCC 59.722 45.833 2.02 4.09 0.00 3.51
2513 2553 1.624312 TGGTGTTGGCTTACATCCGTA 59.376 47.619 2.02 0.00 0.00 4.02
2613 2656 8.650143 ACTATTGGATGTTTGGATTAAGTTGT 57.350 30.769 0.00 0.00 0.00 3.32
2622 2665 8.740123 TGTTTGGATTAAGTTGTCTCACTAAA 57.260 30.769 0.00 0.00 0.00 1.85
2623 2666 8.836413 TGTTTGGATTAAGTTGTCTCACTAAAG 58.164 33.333 0.00 0.00 0.00 1.85
2637 2680 9.349713 TGTCTCACTAAAGTTTTACATGGAAAT 57.650 29.630 3.35 0.00 0.00 2.17
2644 2687 1.872773 TTTACATGGAAATGGGGGCC 58.127 50.000 0.00 0.00 0.00 5.80
2674 2721 4.899457 AGTATGGGATGAATGGAACTACGA 59.101 41.667 0.00 0.00 0.00 3.43
2679 2726 5.588648 TGGGATGAATGGAACTACGAAATTC 59.411 40.000 0.00 0.00 0.00 2.17
2767 2817 3.880490 TGAATGTGTGTGTTTGGTCCTAC 59.120 43.478 0.00 0.00 0.00 3.18
2768 2818 3.857157 ATGTGTGTGTTTGGTCCTACT 57.143 42.857 0.00 0.00 0.00 2.57
2769 2819 3.188159 TGTGTGTGTTTGGTCCTACTC 57.812 47.619 0.00 0.00 0.00 2.59
2770 2820 2.158871 TGTGTGTGTTTGGTCCTACTCC 60.159 50.000 0.00 0.00 0.00 3.85
2771 2821 1.418637 TGTGTGTTTGGTCCTACTCCC 59.581 52.381 0.00 0.00 0.00 4.30
2773 2823 1.975680 TGTGTTTGGTCCTACTCCCTC 59.024 52.381 0.00 0.00 0.00 4.30
2774 2824 1.278413 GTGTTTGGTCCTACTCCCTCC 59.722 57.143 0.00 0.00 0.00 4.30
2775 2825 0.535797 GTTTGGTCCTACTCCCTCCG 59.464 60.000 0.00 0.00 0.00 4.63
2776 2826 0.115745 TTTGGTCCTACTCCCTCCGT 59.884 55.000 0.00 0.00 0.00 4.69
2777 2827 0.115745 TTGGTCCTACTCCCTCCGTT 59.884 55.000 0.00 0.00 0.00 4.44
2778 2828 0.324091 TGGTCCTACTCCCTCCGTTC 60.324 60.000 0.00 0.00 0.00 3.95
2779 2829 1.042003 GGTCCTACTCCCTCCGTTCC 61.042 65.000 0.00 0.00 0.00 3.62
2780 2830 0.324091 GTCCTACTCCCTCCGTTCCA 60.324 60.000 0.00 0.00 0.00 3.53
2781 2831 0.410663 TCCTACTCCCTCCGTTCCAA 59.589 55.000 0.00 0.00 0.00 3.53
2782 2832 1.203212 TCCTACTCCCTCCGTTCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
2783 2833 1.626825 CCTACTCCCTCCGTTCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
2784 2834 2.238898 CCTACTCCCTCCGTTCCAAAAT 59.761 50.000 0.00 0.00 0.00 1.82
2785 2835 3.453353 CCTACTCCCTCCGTTCCAAAATA 59.547 47.826 0.00 0.00 0.00 1.40
2786 2836 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2787 2837 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2788 2838 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2789 2839 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2790 2840 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2791 2841 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2792 2842 3.555956 CCTCCGTTCCAAAATAGATGACG 59.444 47.826 0.00 0.00 0.00 4.35
2793 2843 2.933906 TCCGTTCCAAAATAGATGACGC 59.066 45.455 0.00 0.00 0.00 5.19
2794 2844 2.675844 CCGTTCCAAAATAGATGACGCA 59.324 45.455 0.00 0.00 0.00 5.24
2795 2845 3.126171 CCGTTCCAAAATAGATGACGCAA 59.874 43.478 0.00 0.00 0.00 4.85
2796 2846 4.088648 CGTTCCAAAATAGATGACGCAAC 58.911 43.478 0.00 0.00 0.00 4.17
2797 2847 4.142902 CGTTCCAAAATAGATGACGCAACT 60.143 41.667 0.00 0.00 0.00 3.16
2798 2848 5.616866 CGTTCCAAAATAGATGACGCAACTT 60.617 40.000 0.00 0.00 0.00 2.66
2799 2849 5.957842 TCCAAAATAGATGACGCAACTTT 57.042 34.783 0.00 0.00 0.00 2.66
2800 2850 7.302524 GTTCCAAAATAGATGACGCAACTTTA 58.697 34.615 0.00 0.00 0.00 1.85
2801 2851 7.624360 TCCAAAATAGATGACGCAACTTTAT 57.376 32.000 0.00 0.00 0.00 1.40
2802 2852 8.725405 TCCAAAATAGATGACGCAACTTTATA 57.275 30.769 0.00 0.00 0.00 0.98
2803 2853 8.609176 TCCAAAATAGATGACGCAACTTTATAC 58.391 33.333 0.00 0.00 0.00 1.47
2804 2854 8.612619 CCAAAATAGATGACGCAACTTTATACT 58.387 33.333 0.00 0.00 0.00 2.12
2810 2860 8.773404 AGATGACGCAACTTTATACTAACTTT 57.227 30.769 0.00 0.00 0.00 2.66
2811 2861 9.865321 AGATGACGCAACTTTATACTAACTTTA 57.135 29.630 0.00 0.00 0.00 1.85
2813 2863 9.649167 ATGACGCAACTTTATACTAACTTTAGT 57.351 29.630 6.85 6.85 45.39 2.24
2841 2891 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2842 2892 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2843 2893 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2844 2894 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2845 2895 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2846 2896 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2847 2897 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2848 2898 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2849 2899 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2850 2900 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2851 2901 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
2852 2902 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
2853 2903 2.314071 TTGGAACGGAGGGAGTAGAA 57.686 50.000 0.00 0.00 0.00 2.10
2854 2904 1.848652 TGGAACGGAGGGAGTAGAAG 58.151 55.000 0.00 0.00 0.00 2.85
2855 2905 1.112950 GGAACGGAGGGAGTAGAAGG 58.887 60.000 0.00 0.00 0.00 3.46
2856 2906 1.619160 GGAACGGAGGGAGTAGAAGGT 60.619 57.143 0.00 0.00 0.00 3.50
2857 2907 2.357569 GGAACGGAGGGAGTAGAAGGTA 60.358 54.545 0.00 0.00 0.00 3.08
2858 2908 2.732844 ACGGAGGGAGTAGAAGGTAG 57.267 55.000 0.00 0.00 0.00 3.18
2982 3034 1.133976 CCTTCCTCCATGACCATCACC 60.134 57.143 0.00 0.00 0.00 4.02
2993 3045 2.224769 TGACCATCACCTGAGGAAAACC 60.225 50.000 4.99 0.00 0.00 3.27
2998 3050 1.142870 TCACCTGAGGAAAACCAGTGG 59.857 52.381 4.99 7.91 0.00 4.00
3018 3070 5.095490 GTGGTATTAGCTGACAAAATGTGC 58.905 41.667 0.00 0.00 0.00 4.57
3022 3074 4.852134 TTAGCTGACAAAATGTGCACAT 57.148 36.364 26.61 26.61 38.41 3.21
3024 3076 2.063266 GCTGACAAAATGTGCACATGG 58.937 47.619 31.98 24.55 36.56 3.66
3025 3077 2.063266 CTGACAAAATGTGCACATGGC 58.937 47.619 31.98 23.79 45.13 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 1.612950 TCAGCAAACATGCGGTGATTT 59.387 42.857 7.86 0.00 40.27 2.17
115 117 1.972660 GATCGGGTGTGGGAAGGAGG 61.973 65.000 0.00 0.00 0.00 4.30
138 140 0.318784 AGTTTGAGACCAGACGCGAC 60.319 55.000 15.93 6.86 33.12 5.19
145 147 1.294659 GCTGCGGAGTTTGAGACCAG 61.295 60.000 5.62 0.00 0.00 4.00
180 183 0.804989 GACTGTCCTTTCGCCCATTG 59.195 55.000 0.00 0.00 0.00 2.82
183 186 2.747686 GGACTGTCCTTTCGCCCA 59.252 61.111 19.53 0.00 32.53 5.36
218 221 1.152376 TGCAATGCCCTTCACCCAA 60.152 52.632 1.53 0.00 0.00 4.12
223 226 3.370840 AACTATCTGCAATGCCCTTCA 57.629 42.857 1.53 0.00 0.00 3.02
246 249 3.999001 TGCATCGCAATCTTCTCCATATC 59.001 43.478 0.00 0.00 34.76 1.63
261 264 1.078143 AGGGAAGGTCTTGCATCGC 60.078 57.895 4.71 0.00 32.17 4.58
309 312 2.230266 TCTGGTGATCGACGATGTTGAA 59.770 45.455 16.49 0.00 29.05 2.69
313 316 0.741326 CCTCTGGTGATCGACGATGT 59.259 55.000 16.49 0.00 0.00 3.06
388 394 2.492449 CTTTCACCTCGCTCCGCTCA 62.492 60.000 0.00 0.00 0.00 4.26
417 423 1.138247 CAGCAAAGGATGGAAGCGC 59.862 57.895 0.00 0.00 0.00 5.92
501 507 0.984995 AGGGTTAGGTGGAGTTGAGC 59.015 55.000 0.00 0.00 0.00 4.26
535 543 3.103007 GGTGACCGTTCAAAAGAAAACG 58.897 45.455 0.93 0.93 45.83 3.60
541 549 1.512156 CCCCGGTGACCGTTCAAAAG 61.512 60.000 23.73 5.20 46.80 2.27
542 550 1.526455 CCCCGGTGACCGTTCAAAA 60.526 57.895 23.73 0.00 46.80 2.44
543 551 2.111460 CCCCGGTGACCGTTCAAA 59.889 61.111 23.73 0.00 46.80 2.69
544 552 3.943691 CCCCCGGTGACCGTTCAA 61.944 66.667 23.73 0.00 46.80 2.69
561 569 1.201429 TTCAGGTGGGGAAGCTCTCC 61.201 60.000 6.43 6.43 44.54 3.71
562 570 0.915364 ATTCAGGTGGGGAAGCTCTC 59.085 55.000 0.00 0.00 33.14 3.20
563 571 2.270434 TATTCAGGTGGGGAAGCTCT 57.730 50.000 0.00 0.00 33.14 4.09
564 572 4.917906 ATATATTCAGGTGGGGAAGCTC 57.082 45.455 0.00 0.00 33.14 4.09
565 573 5.014228 GGTAATATATTCAGGTGGGGAAGCT 59.986 44.000 0.00 0.00 36.97 3.74
566 574 5.222048 TGGTAATATATTCAGGTGGGGAAGC 60.222 44.000 0.00 0.00 0.00 3.86
567 575 6.238648 GTGGTAATATATTCAGGTGGGGAAG 58.761 44.000 0.00 0.00 0.00 3.46
568 576 5.073965 GGTGGTAATATATTCAGGTGGGGAA 59.926 44.000 0.00 0.00 0.00 3.97
569 577 4.600111 GGTGGTAATATATTCAGGTGGGGA 59.400 45.833 0.00 0.00 0.00 4.81
570 578 4.263771 GGGTGGTAATATATTCAGGTGGGG 60.264 50.000 0.00 0.00 0.00 4.96
571 579 4.352595 TGGGTGGTAATATATTCAGGTGGG 59.647 45.833 0.00 0.00 0.00 4.61
572 580 5.576563 TGGGTGGTAATATATTCAGGTGG 57.423 43.478 0.00 0.00 0.00 4.61
573 581 7.723616 TCATTTGGGTGGTAATATATTCAGGTG 59.276 37.037 0.00 0.00 0.00 4.00
574 582 7.821566 TCATTTGGGTGGTAATATATTCAGGT 58.178 34.615 0.00 0.00 0.00 4.00
575 583 8.163408 TCTCATTTGGGTGGTAATATATTCAGG 58.837 37.037 0.00 0.00 0.00 3.86
576 584 9.745018 ATCTCATTTGGGTGGTAATATATTCAG 57.255 33.333 0.00 0.00 0.00 3.02
577 585 9.519191 CATCTCATTTGGGTGGTAATATATTCA 57.481 33.333 0.00 0.00 0.00 2.57
578 586 9.520515 ACATCTCATTTGGGTGGTAATATATTC 57.479 33.333 0.00 0.00 0.00 1.75
579 587 9.520515 GACATCTCATTTGGGTGGTAATATATT 57.479 33.333 2.97 2.97 0.00 1.28
580 588 7.824289 CGACATCTCATTTGGGTGGTAATATAT 59.176 37.037 0.00 0.00 0.00 0.86
581 589 7.015779 TCGACATCTCATTTGGGTGGTAATATA 59.984 37.037 0.00 0.00 0.00 0.86
582 590 5.997746 CGACATCTCATTTGGGTGGTAATAT 59.002 40.000 0.00 0.00 0.00 1.28
583 591 5.129650 TCGACATCTCATTTGGGTGGTAATA 59.870 40.000 0.00 0.00 0.00 0.98
584 592 4.080582 TCGACATCTCATTTGGGTGGTAAT 60.081 41.667 0.00 0.00 0.00 1.89
585 593 3.262151 TCGACATCTCATTTGGGTGGTAA 59.738 43.478 0.00 0.00 0.00 2.85
586 594 2.835156 TCGACATCTCATTTGGGTGGTA 59.165 45.455 0.00 0.00 0.00 3.25
587 595 1.628340 TCGACATCTCATTTGGGTGGT 59.372 47.619 0.00 0.00 0.00 4.16
588 596 2.093500 TCTCGACATCTCATTTGGGTGG 60.093 50.000 0.00 0.00 0.00 4.61
589 597 3.251479 TCTCGACATCTCATTTGGGTG 57.749 47.619 0.00 0.00 0.00 4.61
590 598 3.981071 TTCTCGACATCTCATTTGGGT 57.019 42.857 0.00 0.00 0.00 4.51
591 599 5.817296 TGTAATTCTCGACATCTCATTTGGG 59.183 40.000 0.00 0.00 0.00 4.12
592 600 6.908870 TGTAATTCTCGACATCTCATTTGG 57.091 37.500 0.00 0.00 0.00 3.28
601 609 5.016051 ACTGCTGATGTAATTCTCGACAT 57.984 39.130 0.00 0.00 38.99 3.06
602 610 4.456280 ACTGCTGATGTAATTCTCGACA 57.544 40.909 0.00 0.00 0.00 4.35
603 611 4.438145 CGTACTGCTGATGTAATTCTCGAC 59.562 45.833 0.00 0.00 0.00 4.20
604 612 4.497507 CCGTACTGCTGATGTAATTCTCGA 60.498 45.833 0.00 0.00 0.00 4.04
605 613 3.731216 CCGTACTGCTGATGTAATTCTCG 59.269 47.826 0.00 0.00 0.00 4.04
606 614 4.683832 ACCGTACTGCTGATGTAATTCTC 58.316 43.478 0.00 0.00 0.00 2.87
607 615 4.737855 ACCGTACTGCTGATGTAATTCT 57.262 40.909 0.00 0.00 0.00 2.40
608 616 5.808540 TGTAACCGTACTGCTGATGTAATTC 59.191 40.000 0.00 0.00 0.00 2.17
609 617 5.726397 TGTAACCGTACTGCTGATGTAATT 58.274 37.500 0.00 0.00 0.00 1.40
610 618 5.333299 TGTAACCGTACTGCTGATGTAAT 57.667 39.130 0.00 0.00 0.00 1.89
611 619 4.787260 TGTAACCGTACTGCTGATGTAA 57.213 40.909 0.00 0.00 0.00 2.41
612 620 4.787260 TTGTAACCGTACTGCTGATGTA 57.213 40.909 0.00 0.00 0.00 2.29
613 621 3.671008 TTGTAACCGTACTGCTGATGT 57.329 42.857 0.00 0.00 0.00 3.06
614 622 5.121611 TGAATTTGTAACCGTACTGCTGATG 59.878 40.000 0.00 0.00 0.00 3.07
615 623 5.242434 TGAATTTGTAACCGTACTGCTGAT 58.758 37.500 0.00 0.00 0.00 2.90
616 624 4.633175 TGAATTTGTAACCGTACTGCTGA 58.367 39.130 0.00 0.00 0.00 4.26
617 625 4.669197 GCTGAATTTGTAACCGTACTGCTG 60.669 45.833 0.00 0.00 0.00 4.41
618 626 3.435671 GCTGAATTTGTAACCGTACTGCT 59.564 43.478 0.00 0.00 0.00 4.24
619 627 3.435671 AGCTGAATTTGTAACCGTACTGC 59.564 43.478 0.00 0.00 0.00 4.40
620 628 6.097356 TCTAGCTGAATTTGTAACCGTACTG 58.903 40.000 0.00 0.00 0.00 2.74
621 629 6.276832 TCTAGCTGAATTTGTAACCGTACT 57.723 37.500 0.00 0.00 0.00 2.73
622 630 6.035758 CCTTCTAGCTGAATTTGTAACCGTAC 59.964 42.308 0.00 0.00 33.71 3.67
623 631 6.103997 CCTTCTAGCTGAATTTGTAACCGTA 58.896 40.000 0.00 0.00 33.71 4.02
624 632 4.935808 CCTTCTAGCTGAATTTGTAACCGT 59.064 41.667 0.00 0.00 33.71 4.83
625 633 4.332819 CCCTTCTAGCTGAATTTGTAACCG 59.667 45.833 0.00 0.00 33.71 4.44
626 634 4.640647 CCCCTTCTAGCTGAATTTGTAACC 59.359 45.833 0.00 0.00 33.71 2.85
627 635 5.254115 ACCCCTTCTAGCTGAATTTGTAAC 58.746 41.667 0.00 0.00 33.71 2.50
628 636 5.514500 ACCCCTTCTAGCTGAATTTGTAA 57.486 39.130 0.00 0.00 33.71 2.41
629 637 5.253330 CAACCCCTTCTAGCTGAATTTGTA 58.747 41.667 0.00 0.00 33.71 2.41
630 638 4.082125 CAACCCCTTCTAGCTGAATTTGT 58.918 43.478 0.00 0.00 33.71 2.83
631 639 3.119352 GCAACCCCTTCTAGCTGAATTTG 60.119 47.826 0.00 2.02 33.71 2.32
632 640 3.092301 GCAACCCCTTCTAGCTGAATTT 58.908 45.455 0.00 0.00 33.71 1.82
633 641 2.041620 TGCAACCCCTTCTAGCTGAATT 59.958 45.455 0.00 0.00 33.71 2.17
634 642 1.635487 TGCAACCCCTTCTAGCTGAAT 59.365 47.619 0.00 0.00 33.71 2.57
635 643 1.003580 CTGCAACCCCTTCTAGCTGAA 59.996 52.381 0.00 0.00 0.00 3.02
636 644 0.615331 CTGCAACCCCTTCTAGCTGA 59.385 55.000 0.00 0.00 0.00 4.26
637 645 0.615331 TCTGCAACCCCTTCTAGCTG 59.385 55.000 0.00 0.00 0.00 4.24
638 646 0.908198 CTCTGCAACCCCTTCTAGCT 59.092 55.000 0.00 0.00 0.00 3.32
639 647 0.107459 CCTCTGCAACCCCTTCTAGC 60.107 60.000 0.00 0.00 0.00 3.42
640 648 1.484240 CTCCTCTGCAACCCCTTCTAG 59.516 57.143 0.00 0.00 0.00 2.43
641 649 1.078823 TCTCCTCTGCAACCCCTTCTA 59.921 52.381 0.00 0.00 0.00 2.10
642 650 0.178891 TCTCCTCTGCAACCCCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
643 651 0.693049 TTCTCCTCTGCAACCCCTTC 59.307 55.000 0.00 0.00 0.00 3.46
644 652 1.149101 TTTCTCCTCTGCAACCCCTT 58.851 50.000 0.00 0.00 0.00 3.95
645 653 1.149101 TTTTCTCCTCTGCAACCCCT 58.851 50.000 0.00 0.00 0.00 4.79
646 654 1.889170 CTTTTTCTCCTCTGCAACCCC 59.111 52.381 0.00 0.00 0.00 4.95
647 655 2.294512 CACTTTTTCTCCTCTGCAACCC 59.705 50.000 0.00 0.00 0.00 4.11
648 656 2.952310 ACACTTTTTCTCCTCTGCAACC 59.048 45.455 0.00 0.00 0.00 3.77
649 657 4.319839 GCTACACTTTTTCTCCTCTGCAAC 60.320 45.833 0.00 0.00 0.00 4.17
650 658 3.815401 GCTACACTTTTTCTCCTCTGCAA 59.185 43.478 0.00 0.00 0.00 4.08
651 659 3.403038 GCTACACTTTTTCTCCTCTGCA 58.597 45.455 0.00 0.00 0.00 4.41
652 660 2.744741 GGCTACACTTTTTCTCCTCTGC 59.255 50.000 0.00 0.00 0.00 4.26
653 661 3.748568 GTGGCTACACTTTTTCTCCTCTG 59.251 47.826 0.00 0.00 44.29 3.35
654 662 4.009370 GTGGCTACACTTTTTCTCCTCT 57.991 45.455 0.00 0.00 44.29 3.69
663 671 9.580694 ATCTTTGCTAGACAGTGGCTACACTTT 62.581 40.741 0.01 0.00 45.10 2.66
664 672 8.204583 ATCTTTGCTAGACAGTGGCTACACTT 62.205 42.308 0.01 0.00 45.10 3.16
665 673 6.798341 ATCTTTGCTAGACAGTGGCTACACT 61.798 44.000 0.01 0.00 46.08 3.55
666 674 4.621747 ATCTTTGCTAGACAGTGGCTACAC 60.622 45.833 0.01 0.00 40.95 2.90
667 675 2.897326 TCTTTGCTAGACAGTGGCTACA 59.103 45.455 0.01 2.93 32.67 2.74
668 676 3.594603 TCTTTGCTAGACAGTGGCTAC 57.405 47.619 0.01 0.11 32.67 3.58
669 677 6.127054 ACAATATCTTTGCTAGACAGTGGCTA 60.127 38.462 5.37 5.37 35.19 3.93
670 678 5.121811 CAATATCTTTGCTAGACAGTGGCT 58.878 41.667 2.72 2.72 35.19 4.75
671 679 4.878397 ACAATATCTTTGCTAGACAGTGGC 59.122 41.667 0.00 0.00 35.19 5.01
672 680 6.344500 AGACAATATCTTTGCTAGACAGTGG 58.656 40.000 0.00 0.00 35.19 4.00
673 681 7.840342 AAGACAATATCTTTGCTAGACAGTG 57.160 36.000 0.00 0.00 46.05 3.66
686 694 5.253330 TCAAAAAGGCCGAAGACAATATCT 58.747 37.500 0.00 0.00 40.46 1.98
687 695 5.560966 TCAAAAAGGCCGAAGACAATATC 57.439 39.130 0.00 0.00 0.00 1.63
688 696 5.975693 TTCAAAAAGGCCGAAGACAATAT 57.024 34.783 0.00 0.00 0.00 1.28
689 697 5.508320 GGTTTCAAAAAGGCCGAAGACAATA 60.508 40.000 0.00 0.00 0.00 1.90
690 698 4.368315 GTTTCAAAAAGGCCGAAGACAAT 58.632 39.130 0.00 0.00 0.00 2.71
691 699 3.429684 GGTTTCAAAAAGGCCGAAGACAA 60.430 43.478 0.00 0.00 0.00 3.18
692 700 2.100087 GGTTTCAAAAAGGCCGAAGACA 59.900 45.455 0.00 0.00 0.00 3.41
693 701 2.739292 GGTTTCAAAAAGGCCGAAGAC 58.261 47.619 0.00 0.00 0.00 3.01
694 702 1.335496 CGGTTTCAAAAAGGCCGAAGA 59.665 47.619 0.00 0.00 44.57 2.87
695 703 1.335496 TCGGTTTCAAAAAGGCCGAAG 59.665 47.619 0.00 0.00 46.81 3.79
696 704 1.390565 TCGGTTTCAAAAAGGCCGAA 58.609 45.000 0.00 0.00 46.81 4.30
698 706 2.211353 TTTCGGTTTCAAAAAGGCCG 57.789 45.000 0.00 0.00 43.32 6.13
699 707 2.610374 GGTTTTCGGTTTCAAAAAGGCC 59.390 45.455 0.00 0.00 0.00 5.19
700 708 2.610374 GGGTTTTCGGTTTCAAAAAGGC 59.390 45.455 0.00 0.00 0.00 4.35
701 709 3.863041 TGGGTTTTCGGTTTCAAAAAGG 58.137 40.909 0.00 0.00 0.00 3.11
702 710 4.749976 TCTGGGTTTTCGGTTTCAAAAAG 58.250 39.130 0.00 0.00 0.00 2.27
703 711 4.463186 TCTCTGGGTTTTCGGTTTCAAAAA 59.537 37.500 0.00 0.00 0.00 1.94
704 712 4.017808 TCTCTGGGTTTTCGGTTTCAAAA 58.982 39.130 0.00 0.00 0.00 2.44
705 713 3.622630 TCTCTGGGTTTTCGGTTTCAAA 58.377 40.909 0.00 0.00 0.00 2.69
706 714 3.118186 TCTCTCTGGGTTTTCGGTTTCAA 60.118 43.478 0.00 0.00 0.00 2.69
707 715 2.436542 TCTCTCTGGGTTTTCGGTTTCA 59.563 45.455 0.00 0.00 0.00 2.69
708 716 3.067833 CTCTCTCTGGGTTTTCGGTTTC 58.932 50.000 0.00 0.00 0.00 2.78
709 717 2.704065 TCTCTCTCTGGGTTTTCGGTTT 59.296 45.455 0.00 0.00 0.00 3.27
710 718 2.326428 TCTCTCTCTGGGTTTTCGGTT 58.674 47.619 0.00 0.00 0.00 4.44
711 719 2.011122 TCTCTCTCTGGGTTTTCGGT 57.989 50.000 0.00 0.00 0.00 4.69
712 720 3.402628 TTTCTCTCTCTGGGTTTTCGG 57.597 47.619 0.00 0.00 0.00 4.30
713 721 5.693814 CAAATTTCTCTCTCTGGGTTTTCG 58.306 41.667 0.00 0.00 0.00 3.46
714 722 5.242615 AGCAAATTTCTCTCTCTGGGTTTTC 59.757 40.000 0.00 0.00 0.00 2.29
715 723 5.143369 AGCAAATTTCTCTCTCTGGGTTTT 58.857 37.500 0.00 0.00 0.00 2.43
716 724 4.734266 AGCAAATTTCTCTCTCTGGGTTT 58.266 39.130 0.00 0.00 0.00 3.27
717 725 4.379302 AGCAAATTTCTCTCTCTGGGTT 57.621 40.909 0.00 0.00 0.00 4.11
718 726 4.287067 TGTAGCAAATTTCTCTCTCTGGGT 59.713 41.667 0.00 0.00 0.00 4.51
719 727 4.836825 TGTAGCAAATTTCTCTCTCTGGG 58.163 43.478 0.00 0.00 0.00 4.45
720 728 6.998968 ATTGTAGCAAATTTCTCTCTCTGG 57.001 37.500 0.00 0.00 0.00 3.86
728 736 9.722056 CGCTAAGAAATATTGTAGCAAATTTCT 57.278 29.630 18.73 16.62 45.79 2.52
729 737 9.503427 ACGCTAAGAAATATTGTAGCAAATTTC 57.497 29.630 18.73 14.33 39.13 2.17
732 740 9.326413 ACTACGCTAAGAAATATTGTAGCAAAT 57.674 29.630 18.73 10.52 39.13 2.32
733 741 8.712285 ACTACGCTAAGAAATATTGTAGCAAA 57.288 30.769 18.73 9.83 39.13 3.68
734 742 8.712285 AACTACGCTAAGAAATATTGTAGCAA 57.288 30.769 18.73 10.06 39.13 3.91
735 743 8.712285 AAACTACGCTAAGAAATATTGTAGCA 57.288 30.769 18.73 6.48 39.13 3.49
736 744 9.422196 CAAAACTACGCTAAGAAATATTGTAGC 57.578 33.333 12.73 12.73 36.45 3.58
739 747 9.431887 TCTCAAAACTACGCTAAGAAATATTGT 57.568 29.630 0.00 0.00 0.00 2.71
740 748 9.907576 CTCTCAAAACTACGCTAAGAAATATTG 57.092 33.333 0.00 0.00 0.00 1.90
741 749 9.871238 TCTCTCAAAACTACGCTAAGAAATATT 57.129 29.630 0.00 0.00 0.00 1.28
742 750 9.522804 CTCTCTCAAAACTACGCTAAGAAATAT 57.477 33.333 0.00 0.00 0.00 1.28
743 751 8.521176 ACTCTCTCAAAACTACGCTAAGAAATA 58.479 33.333 0.00 0.00 0.00 1.40
744 752 7.329717 CACTCTCTCAAAACTACGCTAAGAAAT 59.670 37.037 0.00 0.00 0.00 2.17
745 753 6.641314 CACTCTCTCAAAACTACGCTAAGAAA 59.359 38.462 0.00 0.00 0.00 2.52
746 754 6.150318 CACTCTCTCAAAACTACGCTAAGAA 58.850 40.000 0.00 0.00 0.00 2.52
747 755 5.335740 CCACTCTCTCAAAACTACGCTAAGA 60.336 44.000 0.00 0.00 0.00 2.10
748 756 4.859798 CCACTCTCTCAAAACTACGCTAAG 59.140 45.833 0.00 0.00 0.00 2.18
749 757 4.280174 ACCACTCTCTCAAAACTACGCTAA 59.720 41.667 0.00 0.00 0.00 3.09
750 758 3.825014 ACCACTCTCTCAAAACTACGCTA 59.175 43.478 0.00 0.00 0.00 4.26
751 759 2.628657 ACCACTCTCTCAAAACTACGCT 59.371 45.455 0.00 0.00 0.00 5.07
752 760 2.987821 GACCACTCTCTCAAAACTACGC 59.012 50.000 0.00 0.00 0.00 4.42
753 761 4.506886 AGACCACTCTCTCAAAACTACG 57.493 45.455 0.00 0.00 0.00 3.51
754 762 4.918583 CGAAGACCACTCTCTCAAAACTAC 59.081 45.833 0.00 0.00 0.00 2.73
755 763 4.583489 ACGAAGACCACTCTCTCAAAACTA 59.417 41.667 0.00 0.00 0.00 2.24
756 764 3.385111 ACGAAGACCACTCTCTCAAAACT 59.615 43.478 0.00 0.00 0.00 2.66
757 765 3.718815 ACGAAGACCACTCTCTCAAAAC 58.281 45.455 0.00 0.00 0.00 2.43
758 766 4.402056 AACGAAGACCACTCTCTCAAAA 57.598 40.909 0.00 0.00 0.00 2.44
759 767 4.099573 AGAAACGAAGACCACTCTCTCAAA 59.900 41.667 0.00 0.00 0.00 2.69
760 768 3.637229 AGAAACGAAGACCACTCTCTCAA 59.363 43.478 0.00 0.00 0.00 3.02
761 769 3.004839 CAGAAACGAAGACCACTCTCTCA 59.995 47.826 0.00 0.00 0.00 3.27
762 770 3.253677 TCAGAAACGAAGACCACTCTCTC 59.746 47.826 0.00 0.00 0.00 3.20
763 771 3.223435 TCAGAAACGAAGACCACTCTCT 58.777 45.455 0.00 0.00 0.00 3.10
764 772 3.644884 TCAGAAACGAAGACCACTCTC 57.355 47.619 0.00 0.00 0.00 3.20
765 773 3.132289 TGTTCAGAAACGAAGACCACTCT 59.868 43.478 0.00 0.00 38.28 3.24
766 774 3.245519 GTGTTCAGAAACGAAGACCACTC 59.754 47.826 0.00 0.00 38.28 3.51
767 775 3.195661 GTGTTCAGAAACGAAGACCACT 58.804 45.455 0.00 0.00 38.28 4.00
768 776 2.933906 TGTGTTCAGAAACGAAGACCAC 59.066 45.455 0.00 0.00 38.15 4.16
769 777 3.254470 TGTGTTCAGAAACGAAGACCA 57.746 42.857 0.00 0.00 38.15 4.02
770 778 3.869246 TCTTGTGTTCAGAAACGAAGACC 59.131 43.478 0.00 0.00 38.15 3.85
771 779 4.551024 GCTCTTGTGTTCAGAAACGAAGAC 60.551 45.833 0.00 0.00 39.10 3.01
772 780 3.555956 GCTCTTGTGTTCAGAAACGAAGA 59.444 43.478 0.00 0.00 38.28 2.87
773 781 3.303395 GGCTCTTGTGTTCAGAAACGAAG 60.303 47.826 0.00 0.00 38.28 3.79
774 782 2.612212 GGCTCTTGTGTTCAGAAACGAA 59.388 45.455 0.00 0.00 38.28 3.85
775 783 2.158957 AGGCTCTTGTGTTCAGAAACGA 60.159 45.455 0.00 0.00 38.28 3.85
776 784 2.213499 AGGCTCTTGTGTTCAGAAACG 58.787 47.619 0.00 0.00 38.28 3.60
777 785 4.336713 AGAAAGGCTCTTGTGTTCAGAAAC 59.663 41.667 0.00 0.00 35.85 2.78
778 786 4.526970 AGAAAGGCTCTTGTGTTCAGAAA 58.473 39.130 0.00 0.00 0.00 2.52
779 787 4.130118 GAGAAAGGCTCTTGTGTTCAGAA 58.870 43.478 0.00 0.00 40.61 3.02
780 788 3.733337 GAGAAAGGCTCTTGTGTTCAGA 58.267 45.455 0.00 0.00 40.61 3.27
781 789 2.478134 CGAGAAAGGCTCTTGTGTTCAG 59.522 50.000 0.00 0.00 41.66 3.02
782 790 2.102420 TCGAGAAAGGCTCTTGTGTTCA 59.898 45.455 0.00 0.00 41.66 3.18
783 791 2.734079 CTCGAGAAAGGCTCTTGTGTTC 59.266 50.000 6.58 0.00 41.66 3.18
784 792 2.103263 ACTCGAGAAAGGCTCTTGTGTT 59.897 45.455 21.68 0.00 38.57 3.32
785 793 1.689273 ACTCGAGAAAGGCTCTTGTGT 59.311 47.619 21.68 0.00 41.66 3.72
786 794 2.333014 GACTCGAGAAAGGCTCTTGTG 58.667 52.381 21.68 0.00 41.66 3.33
787 795 1.273886 GGACTCGAGAAAGGCTCTTGT 59.726 52.381 21.68 0.00 41.66 3.16
788 796 1.404851 GGGACTCGAGAAAGGCTCTTG 60.405 57.143 21.68 0.00 41.66 3.02
789 797 0.899019 GGGACTCGAGAAAGGCTCTT 59.101 55.000 21.68 0.00 41.66 2.85
790 798 0.251832 TGGGACTCGAGAAAGGCTCT 60.252 55.000 21.68 0.00 41.66 4.09
791 799 0.827368 ATGGGACTCGAGAAAGGCTC 59.173 55.000 21.68 4.52 40.38 4.70
792 800 2.035632 CTATGGGACTCGAGAAAGGCT 58.964 52.381 21.68 0.00 0.00 4.58
793 801 1.757699 ACTATGGGACTCGAGAAAGGC 59.242 52.381 21.68 2.56 0.00 4.35
794 802 4.434520 GAAACTATGGGACTCGAGAAAGG 58.565 47.826 21.68 4.85 0.00 3.11
795 803 4.106197 CGAAACTATGGGACTCGAGAAAG 58.894 47.826 21.68 8.87 0.00 2.62
796 804 3.760151 TCGAAACTATGGGACTCGAGAAA 59.240 43.478 21.68 1.27 33.87 2.52
797 805 3.349927 TCGAAACTATGGGACTCGAGAA 58.650 45.455 21.68 1.66 33.87 2.87
798 806 2.995283 TCGAAACTATGGGACTCGAGA 58.005 47.619 21.68 0.00 33.87 4.04
799 807 3.341857 CTCGAAACTATGGGACTCGAG 57.658 52.381 11.84 11.84 46.47 4.04
800 808 2.995283 TCTCGAAACTATGGGACTCGA 58.005 47.619 0.00 0.00 37.06 4.04
801 809 3.777465 TTCTCGAAACTATGGGACTCG 57.223 47.619 0.00 0.00 0.00 4.18
802 810 5.781452 GTTTTCTCGAAACTATGGGACTC 57.219 43.478 0.00 0.00 43.44 3.36
812 820 3.548214 GGCCTTGACAGTTTTCTCGAAAC 60.548 47.826 0.00 0.00 46.42 2.78
813 821 2.616842 GGCCTTGACAGTTTTCTCGAAA 59.383 45.455 0.00 0.00 0.00 3.46
814 822 2.218603 GGCCTTGACAGTTTTCTCGAA 58.781 47.619 0.00 0.00 0.00 3.71
815 823 1.140052 TGGCCTTGACAGTTTTCTCGA 59.860 47.619 3.32 0.00 0.00 4.04
816 824 1.264288 GTGGCCTTGACAGTTTTCTCG 59.736 52.381 3.32 0.00 0.00 4.04
817 825 1.609072 GGTGGCCTTGACAGTTTTCTC 59.391 52.381 3.32 0.00 0.00 2.87
818 826 1.692411 GGTGGCCTTGACAGTTTTCT 58.308 50.000 3.32 0.00 0.00 2.52
819 827 0.310854 CGGTGGCCTTGACAGTTTTC 59.689 55.000 3.32 0.00 0.00 2.29
820 828 0.106918 TCGGTGGCCTTGACAGTTTT 60.107 50.000 3.32 0.00 0.00 2.43
821 829 0.110486 ATCGGTGGCCTTGACAGTTT 59.890 50.000 3.32 0.00 0.00 2.66
822 830 0.606401 CATCGGTGGCCTTGACAGTT 60.606 55.000 3.32 0.00 0.00 3.16
823 831 1.003355 CATCGGTGGCCTTGACAGT 60.003 57.895 3.32 0.00 0.00 3.55
824 832 1.746615 CCATCGGTGGCCTTGACAG 60.747 63.158 0.00 0.00 39.01 3.51
825 833 2.350895 CCATCGGTGGCCTTGACA 59.649 61.111 0.00 0.00 39.01 3.58
834 842 1.378882 CCAACATCTGGCCATCGGTG 61.379 60.000 5.51 4.43 38.76 4.94
835 843 1.077501 CCAACATCTGGCCATCGGT 60.078 57.895 5.51 0.84 38.76 4.69
836 844 1.825191 CCCAACATCTGGCCATCGG 60.825 63.158 5.51 0.07 44.90 4.18
837 845 1.825191 CCCCAACATCTGGCCATCG 60.825 63.158 5.51 0.00 44.90 3.84
838 846 0.324645 AACCCCAACATCTGGCCATC 60.325 55.000 5.51 0.00 44.90 3.51
839 847 0.324645 GAACCCCAACATCTGGCCAT 60.325 55.000 5.51 0.00 44.90 4.40
840 848 1.076549 GAACCCCAACATCTGGCCA 59.923 57.895 4.71 4.71 44.90 5.36
841 849 1.682344 GGAACCCCAACATCTGGCC 60.682 63.158 0.00 0.00 44.90 5.36
842 850 2.046285 CGGAACCCCAACATCTGGC 61.046 63.158 0.00 0.00 44.90 4.85
843 851 1.378514 CCGGAACCCCAACATCTGG 60.379 63.158 0.00 0.00 45.97 3.86
844 852 1.378514 CCCGGAACCCCAACATCTG 60.379 63.158 0.73 0.00 0.00 2.90
845 853 2.612493 CCCCGGAACCCCAACATCT 61.612 63.158 0.73 0.00 0.00 2.90
846 854 2.044352 CCCCGGAACCCCAACATC 60.044 66.667 0.73 0.00 0.00 3.06
847 855 1.731324 TTTCCCCGGAACCCCAACAT 61.731 55.000 0.73 0.00 33.41 2.71
848 856 1.946063 TTTTCCCCGGAACCCCAACA 61.946 55.000 0.73 0.00 33.41 3.33
849 857 0.759812 TTTTTCCCCGGAACCCCAAC 60.760 55.000 0.73 0.00 33.41 3.77
850 858 0.759812 GTTTTTCCCCGGAACCCCAA 60.760 55.000 0.73 0.00 33.41 4.12
851 859 1.152504 GTTTTTCCCCGGAACCCCA 60.153 57.895 0.73 0.00 33.41 4.96
852 860 0.543410 ATGTTTTTCCCCGGAACCCC 60.543 55.000 0.73 0.00 33.41 4.95
853 861 2.219080 TATGTTTTTCCCCGGAACCC 57.781 50.000 0.73 0.00 33.41 4.11
854 862 3.313249 CGTATATGTTTTTCCCCGGAACC 59.687 47.826 0.73 0.00 33.41 3.62
855 863 3.940852 ACGTATATGTTTTTCCCCGGAAC 59.059 43.478 0.73 0.00 33.41 3.62
856 864 3.940221 CACGTATATGTTTTTCCCCGGAA 59.060 43.478 0.73 0.00 0.00 4.30
857 865 3.533547 CACGTATATGTTTTTCCCCGGA 58.466 45.455 0.73 0.00 0.00 5.14
858 866 2.032426 GCACGTATATGTTTTTCCCCGG 59.968 50.000 0.00 0.00 0.00 5.73
859 867 2.285950 CGCACGTATATGTTTTTCCCCG 60.286 50.000 0.00 0.00 0.00 5.73
860 868 2.679336 ACGCACGTATATGTTTTTCCCC 59.321 45.455 0.00 0.00 0.00 4.81
861 869 3.371591 TCACGCACGTATATGTTTTTCCC 59.628 43.478 0.00 0.00 0.00 3.97
862 870 4.587211 TCACGCACGTATATGTTTTTCC 57.413 40.909 0.00 0.00 0.00 3.13
863 871 7.487180 AATTTCACGCACGTATATGTTTTTC 57.513 32.000 0.00 0.00 0.00 2.29
864 872 7.591795 TCAAATTTCACGCACGTATATGTTTTT 59.408 29.630 0.00 0.00 0.00 1.94
865 873 7.078851 TCAAATTTCACGCACGTATATGTTTT 58.921 30.769 0.00 0.00 0.00 2.43
866 874 6.604012 TCAAATTTCACGCACGTATATGTTT 58.396 32.000 0.00 0.00 0.00 2.83
867 875 6.171932 TCAAATTTCACGCACGTATATGTT 57.828 33.333 0.00 0.00 0.00 2.71
868 876 5.788055 TCAAATTTCACGCACGTATATGT 57.212 34.783 0.00 0.00 0.00 2.29
869 877 6.083649 CGAATCAAATTTCACGCACGTATATG 59.916 38.462 0.00 0.00 0.00 1.78
870 878 6.019398 TCGAATCAAATTTCACGCACGTATAT 60.019 34.615 0.00 0.00 0.00 0.86
871 879 5.288952 TCGAATCAAATTTCACGCACGTATA 59.711 36.000 0.00 0.00 0.00 1.47
872 880 4.092237 TCGAATCAAATTTCACGCACGTAT 59.908 37.500 0.00 0.00 0.00 3.06
873 881 3.429207 TCGAATCAAATTTCACGCACGTA 59.571 39.130 0.00 0.00 0.00 3.57
874 882 2.222213 TCGAATCAAATTTCACGCACGT 59.778 40.909 0.00 0.00 0.00 4.49
875 883 2.583801 GTCGAATCAAATTTCACGCACG 59.416 45.455 0.00 0.00 0.00 5.34
876 884 2.583801 CGTCGAATCAAATTTCACGCAC 59.416 45.455 0.00 0.00 0.00 5.34
877 885 2.412195 CCGTCGAATCAAATTTCACGCA 60.412 45.455 0.00 0.00 33.16 5.24
878 886 2.166007 CCGTCGAATCAAATTTCACGC 58.834 47.619 0.00 0.00 33.16 5.34
879 887 2.166007 GCCGTCGAATCAAATTTCACG 58.834 47.619 0.00 0.00 33.71 4.35
880 888 2.095466 TGGCCGTCGAATCAAATTTCAC 60.095 45.455 0.00 0.00 0.00 3.18
881 889 2.155279 TGGCCGTCGAATCAAATTTCA 58.845 42.857 0.00 0.00 0.00 2.69
882 890 2.911819 TGGCCGTCGAATCAAATTTC 57.088 45.000 0.00 0.00 0.00 2.17
883 891 3.443681 AGAATGGCCGTCGAATCAAATTT 59.556 39.130 0.00 0.00 0.00 1.82
884 892 3.016736 AGAATGGCCGTCGAATCAAATT 58.983 40.909 0.00 0.00 0.00 1.82
885 893 2.643551 AGAATGGCCGTCGAATCAAAT 58.356 42.857 0.00 0.00 0.00 2.32
886 894 2.107950 AGAATGGCCGTCGAATCAAA 57.892 45.000 0.00 0.00 0.00 2.69
887 895 2.107950 AAGAATGGCCGTCGAATCAA 57.892 45.000 0.00 0.00 0.00 2.57
888 896 2.006888 GAAAGAATGGCCGTCGAATCA 58.993 47.619 0.00 0.00 0.00 2.57
889 897 1.330829 GGAAAGAATGGCCGTCGAATC 59.669 52.381 0.00 0.00 0.00 2.52
890 898 1.379527 GGAAAGAATGGCCGTCGAAT 58.620 50.000 0.00 0.00 0.00 3.34
891 899 1.017177 CGGAAAGAATGGCCGTCGAA 61.017 55.000 0.00 0.00 40.17 3.71
892 900 1.447140 CGGAAAGAATGGCCGTCGA 60.447 57.895 0.00 0.00 40.17 4.20
893 901 3.089784 CGGAAAGAATGGCCGTCG 58.910 61.111 0.00 0.00 40.17 5.12
949 957 3.144506 ACTACACGATGATACGTAGGGG 58.855 50.000 0.08 0.00 44.76 4.79
1023 1031 2.364160 CCTGGATTGGGGTTGGGG 59.636 66.667 0.00 0.00 0.00 4.96
1024 1032 2.364186 GCCTGGATTGGGGTTGGG 60.364 66.667 0.00 0.00 0.00 4.12
1025 1033 2.755469 CGCCTGGATTGGGGTTGG 60.755 66.667 0.00 0.00 35.60 3.77
1026 1034 2.046285 GTCGCCTGGATTGGGGTTG 61.046 63.158 0.00 0.00 40.43 3.77
1027 1035 2.075355 TTGTCGCCTGGATTGGGGTT 62.075 55.000 0.00 0.00 40.43 4.11
1028 1036 2.484287 CTTGTCGCCTGGATTGGGGT 62.484 60.000 0.00 0.00 40.43 4.95
1534 1551 2.254651 GAGGTTGACGTCGTCGCT 59.745 61.111 19.81 5.91 41.18 4.93
1650 1667 0.103208 GCACGGTGACCCAGATAGAG 59.897 60.000 13.29 0.00 0.00 2.43
1908 1925 3.985925 CAGCTCAAGAATTTGCCTTTGAC 59.014 43.478 0.00 0.00 34.21 3.18
2044 2062 3.931907 AGGCAGTGGCATGAACTATAA 57.068 42.857 20.04 0.00 43.71 0.98
2078 2096 6.371809 TTCTCCATGCGGAAACATTATAAC 57.628 37.500 0.00 0.00 42.21 1.89
2079 2097 5.008613 GCTTCTCCATGCGGAAACATTATAA 59.991 40.000 0.00 0.00 42.21 0.98
2081 2099 3.316308 GCTTCTCCATGCGGAAACATTAT 59.684 43.478 0.00 0.00 42.21 1.28
2082 2100 2.682856 GCTTCTCCATGCGGAAACATTA 59.317 45.455 0.00 0.00 42.21 1.90
2083 2101 1.474077 GCTTCTCCATGCGGAAACATT 59.526 47.619 0.00 0.00 42.21 2.71
2085 2103 0.036732 AGCTTCTCCATGCGGAAACA 59.963 50.000 0.00 0.00 42.21 2.83
2213 2232 9.585099 GGCAATGATCAAATATAAACTCAAACA 57.415 29.630 0.00 0.00 0.00 2.83
2256 2283 3.258872 TGCATGCCATATTAAATCAGGCC 59.741 43.478 16.68 0.00 44.60 5.19
2257 2284 4.021719 AGTGCATGCCATATTAAATCAGGC 60.022 41.667 16.68 0.00 45.41 4.85
2263 2290 3.314913 CCGACAGTGCATGCCATATTAAA 59.685 43.478 16.68 0.00 0.00 1.52
2281 2308 5.918011 TCACAAATTCAAAATAGCAACCGAC 59.082 36.000 0.00 0.00 0.00 4.79
2311 2346 0.238289 GGCAACACACATCTTCCGTG 59.762 55.000 0.00 0.00 40.32 4.94
2312 2347 0.108585 AGGCAACACACATCTTCCGT 59.891 50.000 0.00 0.00 41.41 4.69
2313 2348 2.093306 TAGGCAACACACATCTTCCG 57.907 50.000 0.00 0.00 41.41 4.30
2314 2349 3.674997 TCTTAGGCAACACACATCTTCC 58.325 45.455 0.00 0.00 41.41 3.46
2315 2350 4.997395 TCTTCTTAGGCAACACACATCTTC 59.003 41.667 0.00 0.00 41.41 2.87
2316 2351 4.757149 GTCTTCTTAGGCAACACACATCTT 59.243 41.667 0.00 0.00 41.41 2.40
2317 2352 4.040952 AGTCTTCTTAGGCAACACACATCT 59.959 41.667 0.00 0.00 41.41 2.90
2318 2353 4.153117 CAGTCTTCTTAGGCAACACACATC 59.847 45.833 0.00 0.00 41.41 3.06
2482 2522 3.778265 AGCCAACACCATAATCCAGTTT 58.222 40.909 0.00 0.00 0.00 2.66
2510 2550 8.642020 GTTAAGTATACAAAGACCAACACTACG 58.358 37.037 5.50 0.00 0.00 3.51
2513 2553 8.999431 CATGTTAAGTATACAAAGACCAACACT 58.001 33.333 5.50 0.00 29.97 3.55
2593 2636 6.206634 GTGAGACAACTTAATCCAAACATCCA 59.793 38.462 0.00 0.00 0.00 3.41
2613 2656 8.792633 CCATTTCCATGTAAAACTTTAGTGAGA 58.207 33.333 0.00 0.00 0.00 3.27
2622 2665 2.837591 GCCCCCATTTCCATGTAAAACT 59.162 45.455 0.00 0.00 0.00 2.66
2623 2666 2.093181 GGCCCCCATTTCCATGTAAAAC 60.093 50.000 0.00 0.00 0.00 2.43
2637 2680 1.415421 CCATACTAGTAAGGGCCCCCA 60.415 57.143 21.43 2.61 38.92 4.96
2644 2687 6.935240 TCCATTCATCCCATACTAGTAAGG 57.065 41.667 15.86 15.86 0.00 2.69
2767 2817 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2768 2818 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2769 2819 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2770 2820 3.555956 CGTCATCTATTTTGGAACGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
2771 2821 3.001330 GCGTCATCTATTTTGGAACGGAG 59.999 47.826 0.00 0.00 0.00 4.63
2773 2823 2.675844 TGCGTCATCTATTTTGGAACGG 59.324 45.455 0.00 0.00 0.00 4.44
2774 2824 4.088648 GTTGCGTCATCTATTTTGGAACG 58.911 43.478 0.00 0.00 0.00 3.95
2775 2825 5.296813 AGTTGCGTCATCTATTTTGGAAC 57.703 39.130 0.00 0.00 0.00 3.62
2776 2826 5.957842 AAGTTGCGTCATCTATTTTGGAA 57.042 34.783 0.00 0.00 0.00 3.53
2777 2827 5.957842 AAAGTTGCGTCATCTATTTTGGA 57.042 34.783 0.00 0.00 0.00 3.53
2778 2828 8.612619 AGTATAAAGTTGCGTCATCTATTTTGG 58.387 33.333 0.00 0.00 0.00 3.28
2784 2834 9.865321 AAAGTTAGTATAAAGTTGCGTCATCTA 57.135 29.630 0.00 0.00 0.00 1.98
2785 2835 8.773404 AAAGTTAGTATAAAGTTGCGTCATCT 57.227 30.769 0.00 0.00 0.00 2.90
2787 2837 9.649167 ACTAAAGTTAGTATAAAGTTGCGTCAT 57.351 29.630 1.81 0.00 41.92 3.06
2815 2865 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
2816 2866 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2817 2867 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2818 2868 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2819 2869 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2820 2870 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2821 2871 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2822 2872 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2823 2873 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2824 2874 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2825 2875 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2826 2876 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2827 2877 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2828 2878 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2829 2879 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2830 2880 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
2831 2881 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
2832 2882 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
2833 2883 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
2834 2884 2.176889 CTTCTACTCCCTCCGTTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
2835 2885 1.618888 CCTTCTACTCCCTCCGTTCCA 60.619 57.143 0.00 0.00 0.00 3.53
2836 2886 1.112950 CCTTCTACTCCCTCCGTTCC 58.887 60.000 0.00 0.00 0.00 3.62
2837 2887 1.849977 ACCTTCTACTCCCTCCGTTC 58.150 55.000 0.00 0.00 0.00 3.95
2838 2888 2.579860 TCTACCTTCTACTCCCTCCGTT 59.420 50.000 0.00 0.00 0.00 4.44
2839 2889 2.203584 TCTACCTTCTACTCCCTCCGT 58.796 52.381 0.00 0.00 0.00 4.69
2840 2890 3.512219 ATCTACCTTCTACTCCCTCCG 57.488 52.381 0.00 0.00 0.00 4.63
2841 2891 6.316513 ACAATATCTACCTTCTACTCCCTCC 58.683 44.000 0.00 0.00 0.00 4.30
2842 2892 8.937207 TTACAATATCTACCTTCTACTCCCTC 57.063 38.462 0.00 0.00 0.00 4.30
2843 2893 7.951245 CCTTACAATATCTACCTTCTACTCCCT 59.049 40.741 0.00 0.00 0.00 4.20
2844 2894 7.729431 ACCTTACAATATCTACCTTCTACTCCC 59.271 40.741 0.00 0.00 0.00 4.30
2845 2895 8.709272 ACCTTACAATATCTACCTTCTACTCC 57.291 38.462 0.00 0.00 0.00 3.85
2937 2989 1.982958 ACCAACATAGTTTCCTCGGGT 59.017 47.619 0.00 0.00 0.00 5.28
2982 3034 4.636206 GCTAATACCACTGGTTTTCCTCAG 59.364 45.833 5.90 0.79 41.38 3.35
2993 3045 6.317088 CACATTTTGTCAGCTAATACCACTG 58.683 40.000 0.00 0.00 0.00 3.66
2998 3050 5.698832 TGTGCACATTTTGTCAGCTAATAC 58.301 37.500 17.42 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.